RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11996
(222 letters)
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA
binding, homeodomain, homeotic proteins, development,
specificity; HET: DNA; 2.40A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 9ant_A*
Length = 81
Score = 130 bits (329), Expect = 9e-40
Identities = 52/70 (74%), Positives = 57/70 (81%)
Query: 1 MSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 60
M+ NG +R R +YTRYQTLELEKEFH N YLTRRRRIE+AHAL LTERQIKIWFQN
Sbjct: 11 MAIAGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQN 70
Query: 61 RRMKWKKEHK 70
RRMK KKE +
Sbjct: 71 RRMKLKKEIQ 80
Score = 127 bits (321), Expect = 2e-38
Identities = 51/68 (75%), Positives = 55/68 (80%)
Query: 127 TVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 186
NG +R R +YTRYQTLELEKEFH N YLTRRRRIE+AHAL LTERQIKIWFQNRR
Sbjct: 13 IAGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRR 72
Query: 187 MKWKKEHK 194
MK KKE +
Sbjct: 73 MKLKKEIQ 80
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A
{Drosophila melanogaster} PDB: 2r5z_A*
Length = 88
Score = 129 bits (325), Expect = 5e-39
Identities = 68/69 (98%), Positives = 68/69 (98%)
Query: 2 STVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 61
STVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL LTERQIKIWFQNR
Sbjct: 20 STVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNR 79
Query: 62 RMKWKKEHK 70
RMKWKKEHK
Sbjct: 80 RMKWKKEHK 88
Score = 128 bits (324), Expect = 6e-39
Identities = 67/69 (97%), Positives = 67/69 (97%)
Query: 126 GTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 185
TVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL LTERQIKIWFQNR
Sbjct: 20 STVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNR 79
Query: 186 RMKWKKEHK 194
RMKWKKEHK
Sbjct: 80 RMKWKKEHK 88
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex,
DNA-binding protein, protein/DNA complex; HET: DNA;
2.35A {Homo sapiens} SCOP: a.4.1.1
Length = 97
Score = 127 bits (321), Expect = 2e-38
Identities = 38/69 (55%), Positives = 46/69 (66%)
Query: 2 STVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 61
+ G RT++T Q ELEKEFHFN+YL+R RR+EIA L L E Q+KIWFQNR
Sbjct: 26 VSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNR 85
Query: 62 RMKWKKEHK 70
RMK KK +
Sbjct: 86 RMKQKKRER 94
Score = 127 bits (321), Expect = 2e-38
Identities = 38/69 (55%), Positives = 46/69 (66%)
Query: 126 GTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 185
+ G RT++T Q ELEKEFHFN+YL+R RR+EIA L L E Q+KIWFQNR
Sbjct: 26 VSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNR 85
Query: 186 RMKWKKEHK 194
RMK KK +
Sbjct: 86 RMKQKKRER 94
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain;
protein-DNA complex, transcription/DNA complex; 2.42A
{Mesocricetus auratus}
Length = 63
Score = 120 bits (302), Expect = 7e-36
Identities = 44/62 (70%), Positives = 50/62 (80%)
Query: 8 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
G KR RT+YTR Q LELEKEF FN+Y++R RR+E+A L LTER IKIWFQNRRMKWKK
Sbjct: 1 GSNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 60
Query: 68 EH 69
E
Sbjct: 61 EE 62
Score = 120 bits (302), Expect = 7e-36
Identities = 44/62 (70%), Positives = 50/62 (80%)
Query: 132 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
G KR RT+YTR Q LELEKEF FN+Y++R RR+E+A L LTER IKIWFQNRRMKWKK
Sbjct: 1 GSNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 60
Query: 192 EH 193
E
Sbjct: 61 EE 62
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA;
NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A
1hom_A 1ftz_A
Length = 68
Score = 119 bits (301), Expect = 1e-35
Identities = 55/60 (91%), Positives = 57/60 (95%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70
KR R +YTRYQTLELEKEFHFNRYLTRRRRIEIAHAL LTERQIKIWFQNRRMKWKKE+K
Sbjct: 3 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62
Score = 119 bits (301), Expect = 1e-35
Identities = 55/60 (91%), Positives = 57/60 (95%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 194
KR R +YTRYQTLELEKEFHFNRYLTRRRRIEIAHAL LTERQIKIWFQNRRMKWKKE+K
Sbjct: 3 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 118 bits (297), Expect = 4e-35
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 6 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 65
+ K + ++ QT+ELEK+F +YL+ R +A L L+ERQ+K WFQNRR KW
Sbjct: 3 SGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKW 62
Query: 66 KKEHK 70
++
Sbjct: 63 RRSGP 67
Score = 118 bits (297), Expect = 4e-35
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 130 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 189
+ K + ++ QT+ELEK+F +YL+ R +A L L+ERQ+K WFQNRR KW
Sbjct: 3 SGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKW 62
Query: 190 KKEHK 194
++
Sbjct: 63 RRSGP 67
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 117 bits (294), Expect = 1e-34
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 7 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 66
+ +R RT +T Q + LEK F +YL+ RI++A +L L++ Q+K W+QNRRMKWK
Sbjct: 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWK 73
Query: 67 KEHK 70
K
Sbjct: 74 KSGP 77
Score = 117 bits (294), Expect = 1e-34
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 190
+ +R RT +T Q + LEK F +YL+ RI++A +L L++ Q+K W+QNRRMKWK
Sbjct: 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWK 73
Query: 191 KEHK 194
K
Sbjct: 74 KSGP 77
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double
helix, helix-turn-helix; NMR {Drosophila melanogaster}
SCOP: a.4.1.1
Length = 68
Score = 115 bits (290), Expect = 4e-34
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70
+R RT++T Q ELE+ F RYLT R +++ L L Q+KIWF+NRR + K +
Sbjct: 3 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62
Score = 115 bits (290), Expect = 4e-34
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 194
+R RT++T Q ELE+ F RYLT R +++ L L Q+KIWF+NRR + K +
Sbjct: 3 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA
complex, HOX hexapeptide, TALE homeodomain, homeodomain
interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB:
1san_A
Length = 77
Score = 116 bits (291), Expect = 4e-34
Identities = 42/62 (67%), Positives = 50/62 (80%)
Query: 9 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 68
T+++R YT++QTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNRRMK KK
Sbjct: 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71
Query: 69 HK 70
+K
Sbjct: 72 NK 73
Score = 116 bits (291), Expect = 4e-34
Identities = 42/62 (67%), Positives = 50/62 (80%)
Query: 133 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192
T+++R YT++QTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNRRMK KK
Sbjct: 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71
Query: 193 HK 194
+K
Sbjct: 72 NK 73
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA
binding protein/DNA), transcription/DNA complex; HET:
DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB:
1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A
1du0_A* 1ztr_A 1enh_A 2p81_A
Length = 61
Score = 114 bits (288), Expect = 7e-34
Identities = 30/59 (50%), Positives = 41/59 (69%)
Query: 9 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
KR RT+++ Q L++EF+ NRYLT RRR +++ L L E QIKIWF+N+R K KK
Sbjct: 2 AEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60
Score = 114 bits (288), Expect = 7e-34
Identities = 30/59 (50%), Positives = 41/59 (69%)
Query: 133 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
KR RT+++ Q L++EF+ NRYLT RRR +++ L L E QIKIWF+N+R K KK
Sbjct: 2 AEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 114 bits (288), Expect = 1e-33
Identities = 27/66 (40%), Positives = 45/66 (68%)
Query: 5 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 64
++ +++R Y++ Q ELE+E+ N+++T+ +R +I+ A L+ERQI IWFQNRR+K
Sbjct: 2 SSGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVK 61
Query: 65 WKKEHK 70
KK
Sbjct: 62 EKKSGP 67
Score = 114 bits (288), Expect = 1e-33
Identities = 27/66 (40%), Positives = 45/66 (68%)
Query: 129 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 188
++ +++R Y++ Q ELE+E+ N+++T+ +R +I+ A L+ERQI IWFQNRR+K
Sbjct: 2 SSGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVK 61
Query: 189 WKKEHK 194
KK
Sbjct: 62 EKKSGP 67
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA
complex, transcription/DNA complex; 2.00A {Drosophila
melanogaster} SCOP: a.4.1.1
Length = 60
Score = 112 bits (283), Expect = 5e-33
Identities = 31/58 (53%), Positives = 41/58 (70%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 68
+R RT++TR Q LEKEF+ Y++R RR E+A L L E IK+WFQNRRMK K++
Sbjct: 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59
Score = 112 bits (283), Expect = 5e-33
Identities = 31/58 (53%), Positives = 41/58 (70%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192
+R RT++TR Q LEKEF+ Y++R RR E+A L L E IK+WFQNRRMK K++
Sbjct: 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens}
PDB: 2ld5_A*
Length = 73
Score = 110 bits (276), Expect = 7e-32
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 4 VNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 63
++ E +++R YT+ Q ELE+E+ N+++T+ +R I+ L+ERQ+ IWFQNRR+
Sbjct: 1 MSHMLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRV 60
Query: 64 KWKKEHK 70
K KK
Sbjct: 61 KEKKVIN 67
Score = 110 bits (276), Expect = 7e-32
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 128 VNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 187
++ E +++R YT+ Q ELE+E+ N+++T+ +R I+ L+ERQ+ IWFQNRR+
Sbjct: 1 MSHMLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRV 60
Query: 188 KWKKEHK 194
K KK
Sbjct: 61 KEKKVIN 67
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex,
DNA-binding, homeobox, NUC developmental protein; 2.70A
{Drosophila melanogaster}
Length = 93
Score = 109 bits (273), Expect = 3e-31
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 8 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
+ K+ RTS+TR Q ELEK FH +YL R +A L +T+ Q+K WFQNRR KW++
Sbjct: 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRR 74
Query: 68 EHK 70
+
Sbjct: 75 QTA 77
Score = 109 bits (273), Expect = 3e-31
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 132 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
+ K+ RTS+TR Q ELEK FH +YL R +A L +T+ Q+K WFQNRR KW++
Sbjct: 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRR 74
Query: 192 EHK 194
+
Sbjct: 75 QTA 77
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 103 bits (258), Expect = 3e-29
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 5 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 64
++ ++ RT Y+ +Q L++ F +YL R E+A +L LT+ Q+KIWFQN+R K
Sbjct: 2 SSGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSK 61
Query: 65 WKKEHK 70
KK
Sbjct: 62 IKKSGP 67
Score = 103 bits (258), Expect = 3e-29
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 129 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 188
++ ++ RT Y+ +Q L++ F +YL R E+A +L LT+ Q+KIWFQN+R K
Sbjct: 2 SSGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSK 61
Query: 189 WKKEHK 194
KK
Sbjct: 62 IKKSGP 67
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 69
Score = 101 bits (253), Expect = 2e-28
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 8 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
G + + Q +ELE++F +YL+ R +A L LTE Q+KIWFQNRR K K+
Sbjct: 2 GHHHHHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKR 61
Query: 68 EHKMASM 74
+ + +
Sbjct: 62 KQLSSEL 68
Score = 101 bits (253), Expect = 2e-28
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 132 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
G + + Q +ELE++F +YL+ R +A L LTE Q+KIWFQNRR K K+
Sbjct: 2 GHHHHHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKR 61
Query: 192 EHKMASM 198
+ + +
Sbjct: 62 KQLSSEL 68
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1f43_A 1yrn_A*
Length = 61
Score = 96.9 bits (242), Expect = 8e-27
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 9 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 66
++ + ++S + LE+ F + L + + E+A +T Q+++WF N+RM+ K
Sbjct: 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61
Score = 96.9 bits (242), Expect = 8e-27
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 133 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 190
++ + ++S + LE+ F + L + + E+A +T Q+++WF N+RM+ K
Sbjct: 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics,
protein structure initiative, PSI, center for
eukaryotic structural genomics; NMR {Homo sapiens}
Length = 84
Score = 96.4 bits (240), Expect = 2e-26
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 8 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
+ ++ RT ++ Q L F +YL+ ++ E+++ L L+ +Q+K WFQN+RMK K+
Sbjct: 20 VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKR 79
Query: 68 EHK 70
K
Sbjct: 80 WQK 82
Score = 96.4 bits (240), Expect = 2e-26
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 132 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
+ ++ RT ++ Q L F +YL+ ++ E+++ L L+ +Q+K WFQN+RMK K+
Sbjct: 20 VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKR 79
Query: 192 EHK 194
K
Sbjct: 80 WQK 82
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA
complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Length = 58
Score = 95.0 bits (237), Expect = 4e-26
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
++ RT +T Q L LE++F +YL+ R E + +L LTE Q+KIWFQNRR K K+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
Score = 95.0 bits (237), Expect = 4e-26
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
++ RT +T Q L LE++F +YL+ R E + +L LTE Q+KIWFQNRR K K+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription,
transcription facto developmental protein,
transcription regulation, NUC homeobox; 2.6A {Mus
musculus}
Length = 62
Score = 94.3 bits (235), Expect = 7e-26
Identities = 21/61 (34%), Positives = 38/61 (62%)
Query: 8 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
G ++ RT +++ Q L+ F +YL+ ++ E++ L L+ +Q+K WFQN+RMK K+
Sbjct: 1 GTKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60
Query: 68 E 68
Sbjct: 61 W 61
Score = 94.3 bits (235), Expect = 7e-26
Identities = 21/61 (34%), Positives = 38/61 (62%)
Query: 132 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
G ++ RT +++ Q L+ F +YL+ ++ E++ L L+ +Q+K WFQN+RMK K+
Sbjct: 1 GTKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60
Query: 192 E 192
Sbjct: 61 W 61
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic
development, complex (homeodomain/DNA); HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P*
1vnd_A 1qry_A
Length = 77
Score = 94.1 bits (234), Expect = 1e-25
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 2 STVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 61
++ + +++R +T+ QT ELE+ F RYL+ R +A + LT Q+KIWFQN
Sbjct: 1 ASDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNH 60
Query: 62 RMKWKKEHKMASMNNP 77
R K K+
Sbjct: 61 RYKTKRAQNEKGYEGH 76
Score = 93.3 bits (232), Expect = 3e-25
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 126 GTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 185
+ + +++R +T+ QT ELE+ F RYL+ R +A + LT Q+KIWFQN
Sbjct: 1 ASDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNH 60
Query: 186 RMKWKKEHKMASMNVIP 202
R K K+ P
Sbjct: 61 RYKTKRAQNEKGYEGHP 77
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental
protein, DNA-binding, N gene regulation; 1.54A {Homo
sapiens}
Length = 56
Score = 88.9 bits (221), Expect = 8e-24
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 15 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 68
TS++R Q LELE+ F +YL R +A AL +T+ Q+K WFQNRR KW+++
Sbjct: 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55
Score = 88.9 bits (221), Expect = 8e-24
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 139 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192
TS++R Q LELE+ F +YL R +A AL +T+ Q+K WFQNRR KW+++
Sbjct: 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus,
transcription-DNA CO; 1.70A {Homo sapiens}
Length = 58
Score = 87.3 bits (217), Expect = 4e-23
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 66
++ R +++ Q ELE+ F RYL+ R ++A L LT Q+KIWFQNRR K K
Sbjct: 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58
Score = 87.3 bits (217), Expect = 4e-23
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 190
++ R +++ Q ELE+ F RYL+ R ++A L LT Q+KIWFQNRR K K
Sbjct: 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding
protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Length = 68
Score = 85.5 bits (212), Expect = 3e-22
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70
+++R +++ Q ELE+ F +YL+ R +A + LT Q+KIWFQN R K K++ K
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62
Query: 71 MASM 74
+
Sbjct: 63 DKAA 66
Score = 85.5 bits (212), Expect = 3e-22
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 194
+++R +++ Q ELE+ F +YL+ R +A + LT Q+KIWFQN R K K++ K
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62
Query: 195 MASM 198
+
Sbjct: 63 DKAA 66
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 87.7 bits (217), Expect = 4e-22
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 7 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 66
+++RTS + LEK F N+ T IA L + + I++WF NRR K K
Sbjct: 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEK 157
Query: 67 K 67
+
Sbjct: 158 R 158
Score = 87.7 bits (217), Expect = 4e-22
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 190
+++RTS + LEK F N+ T IA L + + I++WF NRR K K
Sbjct: 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEK 157
Query: 191 K 191
+
Sbjct: 158 R 158
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 80.1 bits (197), Expect = 4e-19
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 6 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 65
A G +++RTS LE F + +A +L L + +++WF NRR K
Sbjct: 95 AQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKE 154
Query: 66 KKEHKMASM 74
K+ A
Sbjct: 155 KRMTPAAGA 163
Score = 80.1 bits (197), Expect = 4e-19
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 130 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 189
A G +++RTS LE F + +A +L L + +++WF NRR K
Sbjct: 95 AQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKE 154
Query: 190 KKEHKMASM 198
K+ A
Sbjct: 155 KRMTPAAGA 163
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 75.8 bits (186), Expect = 1e-17
Identities = 17/67 (25%), Positives = 34/67 (50%)
Query: 1 MSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 60
V AN +++RT+ + LE+ F + + + + +A L L + +++WF N
Sbjct: 78 NEKVGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCN 137
Query: 61 RRMKWKK 67
RR + K+
Sbjct: 138 RRQREKR 144
Score = 75.4 bits (185), Expect = 1e-17
Identities = 17/68 (25%), Positives = 34/68 (50%)
Query: 124 KRGTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQ 183
V AN +++RT+ + LE+ F + + + + +A L L + +++WF
Sbjct: 77 YNEKVGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFC 136
Query: 184 NRRMKWKK 191
NRR + K+
Sbjct: 137 NRRQREKR 144
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 70.9 bits (174), Expect = 1e-16
Identities = 11/69 (15%), Positives = 26/69 (37%)
Query: 5 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 64
+ + + + Q L+ F N++ + + L+ R+++ WF +RR
Sbjct: 3 SGSSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYH 62
Query: 65 WKKEHKMAS 73
+ S
Sbjct: 63 CRNLKGSRS 71
Score = 70.9 bits (174), Expect = 1e-16
Identities = 11/69 (15%), Positives = 26/69 (37%)
Query: 129 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 188
+ + + + Q L+ F N++ + + L+ R+++ WF +RR
Sbjct: 3 SGSSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYH 62
Query: 189 WKKEHKMAS 197
+ S
Sbjct: 63 CRNLKGSRS 71
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 80
Score = 70.6 bits (173), Expect = 2e-16
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 10 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69
KR RT+ T Q L +++ + TR+ IAH + L +R +++WFQN R + +K
Sbjct: 17 DKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76
Query: 70 KMA 72
+
Sbjct: 77 PSS 79
Score = 70.6 bits (173), Expect = 2e-16
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 134 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 193
KR RT+ T Q L +++ + TR+ IAH + L +R +++WFQN R + +K
Sbjct: 17 DKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76
Query: 194 KMA 196
+
Sbjct: 77 PSS 79
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 69.7 bits (171), Expect = 2e-16
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70
+ RT +T YQ L+ F N Y ++++ L L R I +WFQN R K +K
Sbjct: 8 RSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67
Score = 69.7 bits (171), Expect = 2e-16
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 194
+ RT +T YQ L+ F N Y ++++ L L R I +WFQN R K +K
Sbjct: 8 RSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 67.0 bits (164), Expect = 3e-15
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 5 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 64
++ KR RT T Q L + F N + + E+A L ++ IK WF+N K
Sbjct: 2 SSGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFK 61
Query: 65 WKKEHK 70
++
Sbjct: 62 ERQSGP 67
Score = 67.0 bits (164), Expect = 3e-15
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 129 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 188
++ KR RT T Q L + F N + + E+A L ++ IK WF+N K
Sbjct: 2 SSGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFK 61
Query: 189 WKKEHK 194
++
Sbjct: 62 ERQSGP 67
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 73
Score = 65.9 bits (161), Expect = 8e-15
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 10 TKRQRTSYTRYQTLELEKEFH-FNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 68
+ + + T Q LE F+ N++ IA LTE Q + WF+ R +W++
Sbjct: 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 61
Query: 69 HKMAS 73
+ S
Sbjct: 62 EGLPS 66
Score = 65.9 bits (161), Expect = 8e-15
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 134 TKRQRTSYTRYQTLELEKEFH-FNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192
+ + + T Q LE F+ N++ IA LTE Q + WF+ R +W++
Sbjct: 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 61
Query: 193 HKMAS 197
+ S
Sbjct: 62 EGLPS 66
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 68.2 bits (166), Expect = 8e-15
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 5 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 64
KR+RTS LE F + + ++ IA+ L L + +++WF NRR K
Sbjct: 91 TLVQARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQK 150
Query: 65 WKK 67
K+
Sbjct: 151 GKR 153
Score = 68.2 bits (166), Expect = 8e-15
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 129 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 188
KR+RTS LE F + + ++ IA+ L L + +++WF NRR K
Sbjct: 91 TLVQARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQK 150
Query: 189 WKK 191
K+
Sbjct: 151 GKR 153
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 67.4 bits (164), Expect = 2e-14
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 10 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
+++RTS+T L F N T + E+A L +++WF NRR K
Sbjct: 93 KRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150
Score = 67.4 bits (164), Expect = 2e-14
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 134 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
+++RTS+T L F N T + E+A L +++WF NRR K
Sbjct: 93 KRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain
variant, DNA binding protein, developmental protein,
disease mutation, DNA-binding; NMR {Homo sapiens}
Length = 67
Score = 62.7 bits (153), Expect = 1e-13
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70
+R RT++T+ Q LE F N Y ++A L L +I+IWFQNRR K K+ H+
Sbjct: 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61
Query: 71 MASM 74
+
Sbjct: 62 ESQF 65
Score = 62.7 bits (153), Expect = 1e-13
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 194
+R RT++T+ Q LE F N Y ++A L L +I+IWFQNRR K K+ H+
Sbjct: 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61
Query: 195 MASM 198
+
Sbjct: 62 ESQF 65
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Mus musculus}
Length = 80
Score = 62.8 bits (153), Expect = 1e-13
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70
+R+RT++TR Q LE F RY R E+A + L E ++++WF+NRR K +++ +
Sbjct: 8 RRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67
Query: 71 MASMNNPN 78
+
Sbjct: 68 QQQNGGQS 75
Score = 61.7 bits (150), Expect = 3e-13
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 194
+R+RT++TR Q LE F RY R E+A + L E ++++WF+NRR K +++ +
Sbjct: 8 RRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67
Query: 195 MAS 197
Sbjct: 68 QQQ 70
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 62.5 bits (152), Expect = 2e-13
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 10 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69
KR RTS+ +Q ++ F N + ++A LT+R +++WFQN R K+++
Sbjct: 7 GKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66
Query: 70 KMASMNNPN 78
+
Sbjct: 67 LRQENGGVS 75
Score = 62.1 bits (151), Expect = 3e-13
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 134 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 193
KR RTS+ +Q ++ F N + ++A LT+R +++WFQN R K+++
Sbjct: 7 GKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66
Query: 194 KM 195
Sbjct: 67 LR 68
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription
regulation; HET: DNA; 2.00A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 3a01_B
Length = 81
Score = 62.4 bits (152), Expect = 2e-13
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70
+R RT+++ Q ELE+ F +Y R E+A LTE +I++WFQNRR + +K+H
Sbjct: 19 RRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78
Query: 71 MAS 73
S
Sbjct: 79 SVS 81
Score = 62.4 bits (152), Expect = 2e-13
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 194
+R RT+++ Q ELE+ F +Y R E+A LTE +I++WFQNRR + +K+H
Sbjct: 19 RRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78
Query: 195 MAS 197
S
Sbjct: 79 SVS 81
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA
complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P
2lkx_A* 2l7m_P
Length = 68
Score = 61.2 bits (149), Expect = 4e-13
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 8 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
G +RQRT +T Q +LE F NRY R EIA LTE ++++WF+NRR KW+K
Sbjct: 1 GSQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 60
Query: 68 EHKMASMN 75
+ +
Sbjct: 61 REEFIVTD 68
Score = 61.2 bits (149), Expect = 4e-13
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 132 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
G +RQRT +T Q +LE F NRY R EIA LTE ++++WF+NRR KW+K
Sbjct: 1 GSQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 60
Query: 192 EHKMASMN 199
+ +
Sbjct: 61 REEFIVTD 68
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein,
DNA-binding, N gene regulation; 1.00A {Drosophila
melanogaster} PDB: 3lnq_A 3cmy_A
Length = 60
Score = 60.3 bits (147), Expect = 7e-13
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 13 QRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 71
++T +Q ELEK F Y R E+A + LTE +I++WFQNRR KW+K+ K+
Sbjct: 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEKV 60
Score = 60.3 bits (147), Expect = 7e-13
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 137 QRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 195
++T +Q ELEK F Y R E+A + LTE +I++WFQNRR KW+K+ K+
Sbjct: 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEKV 60
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 80
Score = 60.5 bits (147), Expect = 1e-12
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70
+R RTS+T+ Q LEKEF Y R +A + L E +I++WF NRR KW++E K
Sbjct: 8 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67
Query: 71 MASMNNPN 78
+ + +
Sbjct: 68 LRNQRRQS 75
Score = 59.7 bits (145), Expect = 2e-12
Identities = 26/68 (38%), Positives = 38/68 (55%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 194
+R RTS+T+ Q LEKEF Y R +A + L E +I++WF NRR KW++E K
Sbjct: 8 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67
Query: 195 MASMNVIP 202
+ +
Sbjct: 68 LRNQRRQS 75
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding
protein, homeodomain, LIM domain; NMR {Rattus
norvegicus} SCOP: a.4.1.1
Length = 66
Score = 59.7 bits (145), Expect = 1e-12
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 10 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69
T R RT Q L + N + ++ L+ R I++WFQN+R K KK
Sbjct: 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62
Query: 70 KM 71
M
Sbjct: 63 IM 64
Score = 59.7 bits (145), Expect = 1e-12
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 134 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 193
T R RT Q L + N + ++ L+ R I++WFQN+R K KK
Sbjct: 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62
Query: 194 KM 195
M
Sbjct: 63 IM 64
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 71
Score = 59.8 bits (145), Expect = 2e-12
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 5 NANGETKRQRTSYTRYQTLELEKEFH-FNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 63
++ R RT + L+ H Y + ++ L L + I +FQN+R
Sbjct: 2 SSGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRY 61
Query: 64 KWKK 67
K
Sbjct: 62 HVKH 65
Score = 59.8 bits (145), Expect = 2e-12
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 129 NANGETKRQRTSYTRYQTLELEKEFH-FNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 187
++ R RT + L+ H Y + ++ L L + I +FQN+R
Sbjct: 2 SSGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRY 61
Query: 188 KWKK 191
K
Sbjct: 62 HVKH 65
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 59.3 bits (144), Expect = 3e-12
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70
+R RT +T Q LE F +Y R ++A + L E ++++WF+NRR KW++
Sbjct: 8 RRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67
Query: 71 MA 72
+
Sbjct: 68 SS 69
Score = 59.3 bits (144), Expect = 3e-12
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 194
+R RT +T Q LE F +Y R ++A + L E ++++WF+NRR KW++
Sbjct: 8 RRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67
Query: 195 MA 196
+
Sbjct: 68 SS 69
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription
factor, structural genomics, loop insertion, NPPSFA;
NMR {Homo sapiens} SCOP: a.4.1.1
Length = 95
Score = 58.1 bits (140), Expect = 1e-11
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 12 RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC---------------LTERQIKI 56
R ++ + +E F+ N+Y +R EIA+A +T ++
Sbjct: 9 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 68
Query: 57 WFQNRRMKWKKEHKMASMNNPNL 79
WF NRR + K+ +A++ +
Sbjct: 69 WFANRRKEIKRRANIAAILESSG 91
Score = 58.1 bits (140), Expect = 1e-11
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 15/78 (19%)
Query: 136 RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC---------------LTERQIKI 180
R ++ + +E F+ N+Y +R EIA+A +T ++
Sbjct: 9 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 68
Query: 181 WFQNRRMKWKKEHKMASM 198
WF NRR + K+ +A++
Sbjct: 69 WFANRRKEIKRRANIAAI 86
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain,
transcription factor, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 89
Score = 56.5 bits (136), Expect = 4e-11
Identities = 14/69 (20%), Positives = 26/69 (37%)
Query: 10 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69
T ++ T Q L+ F + LT + LT R+I WF ++ +
Sbjct: 11 TPQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70
Query: 70 KMASMNNPN 78
+ ++ N
Sbjct: 71 EKMEIDESN 79
Score = 56.2 bits (135), Expect = 7e-11
Identities = 13/66 (19%), Positives = 25/66 (37%)
Query: 134 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 193
T ++ T Q L+ F + LT + LT R+I WF ++ +
Sbjct: 11 TPQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70
Query: 194 KMASMN 199
+ ++
Sbjct: 71 EKMEID 76
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 56.5 bits (136), Expect = 4e-11
Identities = 13/67 (19%), Positives = 24/67 (35%)
Query: 10 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69
++ T+ Q LE F + + T+ + L+ R+I WF RR
Sbjct: 13 APQKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72
Query: 70 KMASMNN 76
+ +
Sbjct: 73 QAVLDSM 79
Score = 56.5 bits (136), Expect = 4e-11
Identities = 13/64 (20%), Positives = 23/64 (35%)
Query: 134 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 193
++ T+ Q LE F + + T+ + L+ R+I WF RR
Sbjct: 13 APQKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72
Query: 194 KMAS 197
+
Sbjct: 73 QAVL 76
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac
development, riken structural genomics/proteomics
initiative, RSGI, transcription; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 72
Score = 55.1 bits (133), Expect = 8e-11
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 12 RQRTSYTRYQTLELEKEFH-FNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70
+ T Q LE F+ N++ IA LTE Q + WF+ R +W++
Sbjct: 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62
Query: 71 MAS 73
+ S
Sbjct: 63 LPS 65
Score = 55.1 bits (133), Expect = 8e-11
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 136 RQRTSYTRYQTLELEKEFH-FNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 194
+ T Q LE F+ N++ IA LTE Q + WF+ R +W++
Sbjct: 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62
Query: 195 MAS 197
+ S
Sbjct: 63 LPS 65
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 54.5 bits (131), Expect = 2e-10
Identities = 15/69 (21%), Positives = 21/69 (30%)
Query: 5 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 64
++ + Q LE F N + +T R+I WF RR K
Sbjct: 2 SSGSSGPTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKK 61
Query: 65 WKKEHKMAS 73
E S
Sbjct: 62 VNAEETKKS 70
Score = 54.5 bits (131), Expect = 2e-10
Identities = 15/69 (21%), Positives = 21/69 (30%)
Query: 129 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 188
++ + Q LE F N + +T R+I WF RR K
Sbjct: 2 SSGSSGPTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKK 61
Query: 189 WKKEHKMAS 197
E S
Sbjct: 62 VNAEETKKS 70
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor,
homeodomain, domain swapping, structural oxford protein
production facility, OPPF; 2.70A {Homo sapiens}
Length = 66
Score = 54.0 bits (130), Expect = 2e-10
Identities = 10/63 (15%), Positives = 21/63 (33%)
Query: 8 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
T+ Q L+ F +++ + L +IK WF + R + ++
Sbjct: 2 AHHHHHHRKKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61
Query: 68 EHK 70
Sbjct: 62 GIV 64
Score = 54.0 bits (130), Expect = 2e-10
Identities = 10/63 (15%), Positives = 21/63 (33%)
Query: 132 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
T+ Q L+ F +++ + L +IK WF + R + ++
Sbjct: 2 AHHHHHHRKKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61
Query: 192 EHK 194
Sbjct: 62 GIV 64
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 55.3 bits (132), Expect = 7e-10
Identities = 15/82 (18%), Positives = 29/82 (35%)
Query: 113 HWTNRAPLKYVKRGTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC 172
A + + + K+ R +T Q L F N+ ++ +I I+ L
Sbjct: 76 ALRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLG 135
Query: 173 LTERQIKIWFQNRRMKWKKEHK 194
L + +F N R + +
Sbjct: 136 LELSTVSNFFMNARRRSLDKWL 157
Score = 54.5 bits (130), Expect = 1e-09
Identities = 14/70 (20%), Positives = 26/70 (37%)
Query: 1 MSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 60
+ K+ R +T Q L F N+ ++ +I I+ L L + +F N
Sbjct: 88 EHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMN 147
Query: 61 RRMKWKKEHK 70
R + +
Sbjct: 148 ARRRSLDKWL 157
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding
domain, transcription, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 72
Score = 47.1 bits (112), Expect = 7e-08
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 12 RQRTSYTRYQTLELEKEF-HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 68
+ LEK F +Y +R ++ L + R+I+ WF++RR + K
Sbjct: 10 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67
Score = 47.1 bits (112), Expect = 7e-08
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 136 RQRTSYTRYQTLELEKEF-HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192
+ LEK F +Y +R ++ L + R+I+ WF++RR + K
Sbjct: 10 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A
{Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Length = 99
Score = 44.0 bits (103), Expect = 2e-06
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 21/93 (22%)
Query: 126 GTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC------------- 172
++ + +R R + L + + + ++ R +
Sbjct: 1 ARIDPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQ 60
Query: 173 --------LTERQIKIWFQNRRMKWKKEHKMAS 197
+TE ++ WF NRR + HK+A
Sbjct: 61 AQGLGSNLVTEVRVYNWFANRRKEEAFRHKLAM 93
Score = 43.7 bits (102), Expect = 3e-06
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 21/93 (22%)
Query: 2 STVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC------------- 48
+ ++ + +R R + L + + + ++ R +
Sbjct: 1 ARIDPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQ 60
Query: 49 --------LTERQIKIWFQNRRMKWKKEHKMAS 73
+TE ++ WF NRR + HK+A
Sbjct: 61 AQGLGSNLVTEVRVYNWFANRRKEEAFRHKLAM 93
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 64
Score = 41.7 bits (98), Expect = 6e-06
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 25 LEKEF-HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
LEK F ++ +R ++ L R I+ WF+ RR + K
Sbjct: 15 LEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58
Score = 41.7 bits (98), Expect = 6e-06
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 149 LEKEF-HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
LEK F ++ +R ++ L R I+ WF+ RR + K
Sbjct: 15 LEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo,
protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 43.5 bits (101), Expect = 1e-05
Identities = 18/149 (12%), Positives = 39/149 (26%), Gaps = 29/149 (19%)
Query: 71 MASMNNPNLYTQYQTQGKSCTGRYQVRPITSPHGAYHGDLRYHWTNRAPLKYVKRGTVNA 130
M + LYT Y + + ++ +S + G +
Sbjct: 71 MKTQKRAALYTWYVRKQREILRQFNQTVQSSGNMTDKSSQDQLLFLFPEFSQQSHGPGQS 130
Query: 131 NGET--------KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC---------- 172
+ +R R + L + + + ++ R +
Sbjct: 131 DDACSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVS 190
Query: 173 -----------LTERQIKIWFQNRRMKWK 190
+TE ++ WF NRR +
Sbjct: 191 PSKAHGLGSNLVTEVRVYNWFANRRKEEA 219
Score = 41.9 bits (97), Expect = 5e-05
Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 21/81 (25%)
Query: 7 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC------------------ 48
N + +R R + L + + + ++ R +
Sbjct: 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLG 198
Query: 49 ---LTERQIKIWFQNRRMKWK 66
+TE ++ WF NRR +
Sbjct: 199 SNLVTEVRVYNWFANRRKEEA 219
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 39.8 bits (92), Expect = 7e-05
Identities = 12/58 (20%), Positives = 21/58 (36%)
Query: 10 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
+ + T Q L+ F ++ + ++A L I WF + R WK
Sbjct: 25 STGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKN 82
Score = 39.8 bits (92), Expect = 7e-05
Identities = 12/58 (20%), Positives = 21/58 (36%)
Query: 134 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
+ + T Q L+ F ++ + ++A L I WF + R WK
Sbjct: 25 STGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKN 82
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation,
DNA-binding, POU domain, diabetes, disease mutation,
MODY3, transcription/DNA comple; 2.60A {Homo sapiens}
SCOP: a.4.1.1 a.35.1.1
Length = 194
Score = 41.0 bits (95), Expect = 1e-04
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 21/78 (26%)
Query: 10 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC--------------------- 48
+R R + L + + + ++ R +
Sbjct: 115 GRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNL 174
Query: 49 LTERQIKIWFQNRRMKWK 66
+TE ++ WF NRR +
Sbjct: 175 VTEVRVYNWFANRRKEEA 192
Score = 41.0 bits (95), Expect = 1e-04
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 21/78 (26%)
Query: 134 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC--------------------- 172
+R R + L + + + ++ R +
Sbjct: 115 GRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNL 174
Query: 173 LTERQIKIWFQNRRMKWK 190
+TE ++ WF NRR +
Sbjct: 175 VTEVRVYNWFANRRKEEA 192
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 34.8 bits (79), Expect = 0.002
Identities = 10/62 (16%), Positives = 26/62 (41%)
Query: 6 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 65
++G + LE+ + ++ L +++ A L+ +Q+ WF +R +
Sbjct: 2 SSGSSGPLPIPPPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSRLPQP 61
Query: 66 KK 67
+
Sbjct: 62 AE 63
Score = 34.8 bits (79), Expect = 0.002
Identities = 10/62 (16%), Positives = 26/62 (41%)
Query: 130 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 189
++G + LE+ + ++ L +++ A L+ +Q+ WF +R +
Sbjct: 2 SSGSSGPLPIPPPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSRLPQP 61
Query: 190 KK 191
+
Sbjct: 62 AE 63
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.003
Identities = 28/211 (13%), Positives = 57/211 (27%), Gaps = 89/211 (42%)
Query: 24 ELEKE-FHFNRYLTRRRRIEIA-----------------HALCLTER---------QIKI 56
+++ N +L +++EI+ + L LT R Q +I
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 57 WFQNRRMKWKKEHKMASMNNPNLYTQYQTQGKSCTGRYQVRPITSPHGAYHGDLRYHWTN 116
F R+ ++ P+ SP +H L +
Sbjct: 408 PFSERK--------------LKFSNRFL-------------PVASP---FHSHL-LVPAS 436
Query: 117 RAPLKYVKRGTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLT------RRRRIEIAHA 170
K + + V+ N K+ Y T R I+
Sbjct: 437 DLINKDLVKNNVSFNA------------------KDIQIPVYDTFDGSDLRVLSGSISER 478
Query: 171 LCLTERQIKIWFQNRRMKWKKEHKMASMNVI 201
+ I +KW+ + + +++
Sbjct: 479 IV---DCI----IRLPVKWETTTQFKATHIL 502
Score = 33.5 bits (76), Expect = 0.064
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 34/91 (37%)
Query: 148 ELEKE-FHFNRYLTRRRRIEIA-----------------HALCLTER---------QIKI 180
+++ N +L +++EI+ + L LT R Q +I
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 181 WFQNRRMKWKKEHKMASMNVIPYHYHMSQPY 211
F R K K ++ + P+H S
Sbjct: 408 PFSER--KLKFSNRFLPVAS-PFH---S-HL 431
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain,
transcription factor, leucine zipper- containing
factor, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.4.1.1
Length = 76
Score = 34.6 bits (79), Expect = 0.003
Identities = 12/62 (19%), Positives = 21/62 (33%)
Query: 8 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
G + T+ Q L+ F ++ R ++ L +I WF + R K
Sbjct: 1 GSSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH 60
Query: 68 EH 69
Sbjct: 61 GQ 62
Score = 34.6 bits (79), Expect = 0.003
Identities = 12/62 (19%), Positives = 21/62 (33%)
Query: 132 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
G + T+ Q L+ F ++ R ++ L +I WF + R K
Sbjct: 1 GSSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH 60
Query: 192 EH 193
Sbjct: 61 GQ 62
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 33.0 bits (74), Expect = 0.012
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 5 NANGETKRQRTSYTRYQTLELEKEFH----FNRYLTRRRRIEIAHALCLTERQIKIWFQN 60
+ + + RT ++ L+K + + R + +A L + ++ W N
Sbjct: 3 SGSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGN 62
Query: 61 RRMKWKKE 68
RR K++
Sbjct: 63 RRRKYRLM 70
Score = 33.0 bits (74), Expect = 0.012
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 129 NANGETKRQRTSYTRYQTLELEKEFH----FNRYLTRRRRIEIAHALCLTERQIKIWFQN 184
+ + + RT ++ L+K + + R + +A L + ++ W N
Sbjct: 3 SGSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGN 62
Query: 185 RRMKWKKE 192
RR K++
Sbjct: 63 RRRKYRLM 70
>2e19_A Transcription factor 8; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 64
Score = 32.3 bits (73), Expect = 0.015
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 25 LEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
L+ + N + +IA ++ L +K WF+ +
Sbjct: 18 LKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60
Score = 32.3 bits (73), Expect = 0.015
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 149 LEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
L+ + N + +IA ++ L +K WF+ +
Sbjct: 18 LKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational
analysis, G protein, GAS subunit, A2A adenosine
receptor, cell-penetrating peptides; NMR {Synthetic}
PDB: 2o00_A
Length = 37
Score = 30.8 bits (69), Expect = 0.027
Identities = 16/16 (100%), Positives = 16/16 (100%)
Query: 52 RQIKIWFQNRRMKWKK 67
RQIKIWFQNRRMKWKK
Sbjct: 1 RQIKIWFQNRRMKWKK 16
Score = 30.8 bits (69), Expect = 0.027
Identities = 16/16 (100%), Positives = 16/16 (100%)
Query: 176 RQIKIWFQNRRMKWKK 191
RQIKIWFQNRRMKWKK
Sbjct: 1 RQIKIWFQNRRMKWKK 16
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices
with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 30.9 bits (69), Expect = 0.060
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 6 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 64
++G + Y + L+ + N ++I+ A+ L + +K WF+ R++
Sbjct: 2 SSGSSGSPINPY-KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59
Score = 30.9 bits (69), Expect = 0.060
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 130 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 188
++G + Y + L+ + N ++I+ A+ L + +K WF+ R++
Sbjct: 2 SSGSSGSPINPY-KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding
cooperativity, maltose binding protein, MBP, sugar
binding, DNA binding protein; 2.10A {Escherichia coli}
SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Length = 421
Score = 32.5 bits (74), Expect = 0.10
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 26 EKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 66
E+ F + L + + E+A +T Q+++WF N+RM+ K
Sbjct: 381 EQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421
Score = 32.5 bits (74), Expect = 0.10
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 150 EKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 190
E+ F + L + + E+A +T Q+++WF N+RM+ K
Sbjct: 381 EQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration
calorimetry, protein-DNA complex, transcription/DNA
complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1akh_B* 1apl_C* 1yrn_B*
Length = 83
Score = 29.0 bits (65), Expect = 0.28
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNR---YLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
+ +T+ LE F N YL + + L+ QIK W RR K K
Sbjct: 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKT 62
Query: 68 EHKMASMNNP 77
+ +
Sbjct: 63 ITIAPELADL 72
Score = 28.2 bits (63), Expect = 0.52
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNR---YLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
+ +T+ LE F N YL + + L+ QIK W RR K K
Sbjct: 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKT 62
Query: 192 EHKMASM 198
+
Sbjct: 63 ITIAPEL 69
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription
regulation, transcriptional repression, DNA- binding
protein; HET: DNA; 2.25A {Saccharomyces cerevisiae}
SCOP: a.4.1.1
Length = 87
Score = 28.3 bits (63), Expect = 0.69
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 30 HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 66
N YL + + L+ QIK W NRR K K
Sbjct: 50 IENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86
Score = 28.3 bits (63), Expect = 0.69
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 154 HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 190
N YL + + L+ QIK W NRR K K
Sbjct: 50 IENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain,
hoogsteen base PAIR, transcription/DNA complex; HET:
5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Length = 60
Score = 27.3 bits (61), Expect = 0.73
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 30 HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
N YL + + L+ QIK W NRR K K
Sbjct: 21 IENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
Score = 27.3 bits (61), Expect = 0.73
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 154 HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
N YL + + L+ QIK W NRR K K
Sbjct: 21 IENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 102
Score = 27.1 bits (59), Expect = 2.3
Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 21/94 (22%)
Query: 130 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC----------------- 172
++G + R R + L + + + ++ R +
Sbjct: 2 SSGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGL 61
Query: 173 ----LTERQIKIWFQNRRMKWKKEHKMASMNVIP 202
+TE ++ WF NRR + K+A
Sbjct: 62 GSNLVTEVRVYNWFANRRKEEAFRQKLAMDAYSS 95
Score = 26.8 bits (58), Expect = 2.4
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 21/88 (23%)
Query: 6 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC----------------- 48
++G + R R + L + + + ++ R +
Sbjct: 2 SSGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGL 61
Query: 49 ----LTERQIKIWFQNRRMKWKKEHKMA 72
+TE ++ WF NRR + K+A
Sbjct: 62 GSNLVTEVRVYNWFANRRKEEAFRQKLA 89
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
a.4.1.1
Length = 80
Score = 26.1 bits (57), Expect = 3.2
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC----LTERQIKIWFQNRRMKWK 66
KR RT +T Q ++ + ++ C + + +KIW N +
Sbjct: 18 KRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGP 77
Query: 67 K 67
Sbjct: 78 S 78
Score = 26.1 bits (57), Expect = 3.2
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC----LTERQIKIWFQNRRMKWK 190
KR RT +T Q ++ + ++ C + + +KIW N +
Sbjct: 18 KRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGP 77
Query: 191 K 191
Sbjct: 78 S 78
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast
structural genomics CON PSI-biology, transcription; NMR
{Homo sapiens}
Length = 89
Score = 25.5 bits (56), Expect = 6.4
Identities = 12/59 (20%), Positives = 25/59 (42%)
Query: 30 HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNNPNLYTQYQTQGK 88
+N Y + + + ++ L+ Q+ WF N R + + +PN +T + K
Sbjct: 28 RYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAK 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.132 0.415
Gapped
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,493,701
Number of extensions: 193698
Number of successful extensions: 526
Number of sequences better than 10.0: 1
Number of HSP's gapped: 496
Number of HSP's successfully gapped: 157
Length of query: 222
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 132
Effective length of database: 4,188,903
Effective search space: 552935196
Effective search space used: 552935196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.6 bits)