RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11996
(222 letters)
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 82.1 bits (203), Expect = 1e-21
Identities = 52/56 (92%), Positives = 54/56 (96%)
Query: 14 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69
R +YTRYQTLELEKEFHFNRYLTRRRRIEIAHAL LTERQIKIWFQNRRMKWKKE+
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 56
Score = 82.1 bits (203), Expect = 1e-21
Identities = 52/56 (92%), Positives = 54/56 (96%)
Query: 138 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 193
R +YTRYQTLELEKEFHFNRYLTRRRRIEIAHAL LTERQIKIWFQNRRMKWKKE+
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 56
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 82.2 bits (203), Expect = 2e-21
Identities = 42/62 (67%), Positives = 50/62 (80%)
Query: 9 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 68
T+++R YT++QTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNRRMK KK
Sbjct: 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71
Query: 69 HK 70
+K
Sbjct: 72 NK 73
Score = 82.2 bits (203), Expect = 2e-21
Identities = 42/62 (67%), Positives = 50/62 (80%)
Query: 133 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192
T+++R YT++QTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNRRMK KK
Sbjct: 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71
Query: 193 HK 194
+K
Sbjct: 72 NK 73
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 81.0 bits (200), Expect = 5e-21
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70
+R RTS+T+ Q LEKEF Y R +A + L E +I++WF NRR KW++E K
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 61
Query: 71 M 71
+
Sbjct: 62 L 62
Score = 81.0 bits (200), Expect = 5e-21
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 194
+R RTS+T+ Q LEKEF Y R +A + L E +I++WF NRR KW++E K
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 61
Query: 195 M 195
+
Sbjct: 62 L 62
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 75.3 bits (185), Expect = 6e-19
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
K + ++ QT+ELEK+F +YL+ R +A L L+ERQ+K WFQNRR KW++
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
Score = 75.3 bits (185), Expect = 6e-19
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
K + ++ QT+ELEK+F +YL+ R +A L L+ERQ+K WFQNRR KW++
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 73.8 bits (181), Expect = 2e-18
Identities = 27/57 (47%), Positives = 43/57 (75%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
+++R Y++ Q ELE+E+ N+++T+ +R +I+ A L+ERQI IWFQNRR+K KK
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
Score = 73.8 bits (181), Expect = 2e-18
Identities = 27/57 (47%), Positives = 43/57 (75%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
+++R Y++ Q ELE+E+ N+++T+ +R +I+ A L+ERQI IWFQNRR+K KK
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 74.3 bits (182), Expect = 3e-18
Identities = 37/60 (61%), Positives = 44/60 (73%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70
RT++T Q ELEKEFHFN+YL+R RR+EIA L L E Q+KIWFQNRRMK KK +
Sbjct: 28 SGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 87
Score = 74.3 bits (182), Expect = 3e-18
Identities = 37/60 (61%), Positives = 44/60 (73%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 194
RT++T Q ELEKEFHFN+YL+R RR+EIA L L E Q+KIWFQNRRMK KK +
Sbjct: 28 SGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 87
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 70.7 bits (173), Expect = 3e-17
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70
+R RT+++ Q ELE+ F +Y R E+A LTE +I++WFQNRR + +K+H
Sbjct: 3 RRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 62
Query: 71 MAS 73
S
Sbjct: 63 SVS 65
Score = 70.7 bits (173), Expect = 3e-17
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 194
+R RT+++ Q ELE+ F +Y R E+A LTE +I++WFQNRR + +K+H
Sbjct: 3 RRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 62
Query: 195 MAS 197
S
Sbjct: 63 SVS 65
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 70.3 bits (172), Expect = 5e-17
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 10 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69
T R RT Q L + N + ++ L+ R I++WFQN+R K KK
Sbjct: 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62
Query: 70 KM 71
M
Sbjct: 63 IM 64
Score = 70.3 bits (172), Expect = 5e-17
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 134 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 193
T R RT Q L + N + ++ L+ R I++WFQN+R K KK
Sbjct: 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62
Query: 194 KM 195
M
Sbjct: 63 IM 64
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 69.9 bits (171), Expect = 6e-17
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 12 RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 64
R RT+++ Q L++EF+ NRYLT RRR +++ L L E QIKIWFQN R K
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
Score = 69.9 bits (171), Expect = 6e-17
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 136 RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 188
R RT+++ Q L++EF+ NRYLT RRR +++ L L E QIKIWFQN R K
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 70.5 bits (172), Expect = 8e-17
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
Query: 12 RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIA---------------HALCLTERQIKI 56
R ++ + +E F+ N+Y +R EIA +T ++
Sbjct: 2 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 61
Query: 57 WFQNRRMKWKKEHKMASM 74
WF NRR + K+ +A++
Sbjct: 62 WFANRRKEIKRRANIAAI 79
Score = 70.5 bits (172), Expect = 8e-17
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
Query: 136 RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIA---------------HALCLTERQIKI 180
R ++ + +E F+ N+Y +R EIA +T ++
Sbjct: 2 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 61
Query: 181 WFQNRRMKWKKEHKMASM 198
WF NRR + K+ +A++
Sbjct: 62 WFANRRKEIKRRANIAAI 79
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 68.0 bits (166), Expect = 3e-16
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 12 RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 68
R RT++TR Q LEKEF+ Y++R RR E+A L L E IK+WFQNRRMK K++
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 57
Score = 68.0 bits (166), Expect = 3e-16
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 136 RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192
R RT++TR Q LEKEF+ Y++R RR E+A L L E IK+WFQNRRMK K++
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 57
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 68.0 bits (166), Expect = 4e-16
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70
+R RT++T Q ELE+ F RYLT R +++ L L Q+KIWF+NRR + K +
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 61
Score = 68.0 bits (166), Expect = 4e-16
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 194
+R RT++T Q ELE+ F RYLT R +++ L L Q+KIWF+NRR + K +
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 61
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 67.2 bits (164), Expect = 6e-16
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
++ RT +T Q L LE++F +YL+ R E + +L LTE Q+KIWFQNRR K K+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
Score = 67.2 bits (164), Expect = 6e-16
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
++ RT +T Q L LE++F +YL+ R E + +L LTE Q+KIWFQNRR K K+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 67.8 bits (165), Expect = 7e-16
Identities = 26/68 (38%), Positives = 37/68 (54%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 194
+++R +T+ QT ELE+ F RYL+ R +A + LT Q+KIWFQN R K K+
Sbjct: 10 RKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69
Query: 195 MASMNVIP 202
P
Sbjct: 70 EKGYEGHP 77
Score = 66.6 bits (162), Expect = 2e-15
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70
+++R +T+ QT ELE+ F RYL+ R +A + LT Q+KIWFQN R K K+
Sbjct: 10 RKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 66.9 bits (163), Expect = 1e-15
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70
+++R +++ Q ELE+ F +YL+ R +A + LT Q+KIWFQN R K K++ K
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62
Score = 66.9 bits (163), Expect = 1e-15
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 194
+++R +++ Q ELE+ F +YL+ R +A + LT Q+KIWFQN R K K++ K
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 66.5 bits (162), Expect = 1e-15
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 68
+RQRT +T Q +LE F NRY R EIA LTE ++++WF+NRR KW+K
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 59
Score = 66.5 bits (162), Expect = 1e-15
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192
+RQRT +T Q +LE F NRY R EIA LTE ++++WF+NRR KW+K
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 59
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 65.9 bits (161), Expect = 2e-15
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 18 TRYQTLELEKEF-HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
T LEK F ++ +R ++ L R I+ WF+ RR + K
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
Score = 65.9 bits (161), Expect = 2e-15
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 142 TRYQTLELEKEF-HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
T LEK F ++ +R ++ L R I+ WF+ RR + K
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 64.9 bits (158), Expect = 4e-15
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 14 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 62
R +T Q L F N+ ++ +I I+ L L + +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
Score = 64.9 bits (158), Expect = 4e-15
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 138 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 186
R +T Q L F N+ ++ +I I+ L L + +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 65.0 bits (158), Expect = 8e-15
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 11 KRQRTSYTRYQTLELEKEFHF-NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69
+ T Q LE F+ N++ IA LTE Q + WF+ R +W++
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
Query: 70 KMAS 73
+ S
Sbjct: 62 GLPS 65
Score = 65.0 bits (158), Expect = 8e-15
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 135 KRQRTSYTRYQTLELEKEFHF-NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 193
+ T Q LE F+ N++ IA LTE Q + WF+ R +W++
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
Query: 194 KMAS 197
+ S
Sbjct: 62 GLPS 65
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 64.5 bits (157), Expect = 8e-15
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 12 RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
++RT+ + LE+ F + + + + +A L L + +++WF NRR + K+
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 56
Score = 64.5 bits (157), Expect = 8e-15
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 136 RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
++RT+ + LE+ F + + + + +A L L + +++WF NRR + K+
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 56
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 64.4 bits (157), Expect = 9e-15
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 11 KRQRTSYTRYQTLELEKEF---HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
K +R ++ T + + Y T + +IA LT Q+ WF N R + +
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62
Score = 64.4 bits (157), Expect = 9e-15
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 135 KRQRTSYTRYQTLELEKEF---HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
K +R ++ T + + Y T + +IA LT Q+ WF N R + +
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 62.6 bits (152), Expect = 4e-14
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 14 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 66
++S + LE+ F + L + + E+A +T Q+++WF N+RM+ K
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
Score = 62.6 bits (152), Expect = 4e-14
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 138 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 190
++S + LE+ F + L + + E+A +T Q+++WF N+RM+ K
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 61.3 bits (149), Expect = 1e-13
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 12 RQRTSYTRYQTLELEKEF-HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 66
+ LEK F +Y +R ++ L + R+I+ WF++RR + K
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
Score = 61.3 bits (149), Expect = 1e-13
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 136 RQRTSYTRYQTLELEKEF-HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 190
+ LEK F +Y +R ++ L + R+I+ WF++RR + K
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 60.5 bits (146), Expect = 3e-13
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 8 GETKRQRTSYTRYQTLELEKEFH-FNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 66
R RT + L+ H Y + ++ L L + I +FQN+R K
Sbjct: 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64
Query: 67 KEHK 70
Sbjct: 65 HSGP 68
Score = 60.5 bits (146), Expect = 3e-13
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 132 GETKRQRTSYTRYQTLELEKEFH-FNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 190
R RT + L+ H Y + ++ L L + I +FQN+R K
Sbjct: 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64
Query: 191 KEHK 194
Sbjct: 65 HSGP 68
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 60.2 bits (146), Expect = 4e-13
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 17 YTRYQTLELEKEFHFNR---YLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
+T+ LE F N YL + + L+ QIK W NRR K K
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
Score = 60.2 bits (146), Expect = 4e-13
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 141 YTRYQTLELEKEFHFNR---YLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
+T+ LE F N YL + + L+ QIK W NRR K K
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 60.1 bits (145), Expect = 5e-13
Identities = 14/69 (20%), Positives = 26/69 (37%)
Query: 10 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69
T ++ T Q L+ F + LT + LT R+I WF ++ +
Sbjct: 4 TPQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 63
Query: 70 KMASMNNPN 78
+ ++ N
Sbjct: 64 EKMEIDESN 72
Score = 58.6 bits (141), Expect = 2e-12
Identities = 13/66 (19%), Positives = 25/66 (37%)
Query: 134 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 193
T ++ T Q L+ F + LT + LT R+I WF ++ +
Sbjct: 4 TPQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 63
Query: 194 KMASMN 199
+ ++
Sbjct: 64 EKMEID 69
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 59.6 bits (144), Expect = 7e-13
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 11 KRQRTSYTRYQTLELEK---EFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
+R+R ++ + T L + N Y + + E+A +T Q+ WF N+R+++KK
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 61
Query: 68 EHKMASMNNPNLY 80
N+Y
Sbjct: 62 NIG-KFQEEANIY 73
Score = 59.6 bits (144), Expect = 9e-13
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 135 KRQRTSYTRYQTLELEK---EFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
+R+R ++ + T L + N Y + + E+A +T Q+ WF N+R+++KK
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 61
Query: 192 EHK 194
Sbjct: 62 NIG 64
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 58.9 bits (142), Expect = 1e-12
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
KR+RTS LE F + ++ IA+ L L + +++WF NRR K K+
Sbjct: 9 KRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKR 65
Score = 58.9 bits (142), Expect = 1e-12
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
KR+RTS LE F + ++ IA+ L L + +++WF NRR K K+
Sbjct: 9 KRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKR 65
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 57.3 bits (138), Expect = 3e-12
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 13 QRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69
+RTS + LEK F N+ T IA L + + I++WF NRR K K+ +
Sbjct: 1 KRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRIN 57
Score = 57.3 bits (138), Expect = 3e-12
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 137 QRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 193
+RTS + LEK F N+ T IA L + + I++WF NRR K K+ +
Sbjct: 1 KRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRIN 57
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 55.4 bits (133), Expect = 3e-11
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 5 NANGETKRQRTSYTRYQTLELEKEFH----FNRYLTRRRRIEIAHALCLTERQIKIWFQN 60
++ G TKR RT +T Q ++ + + + + +KIW N
Sbjct: 12 SSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHN 71
Query: 61 RRMKWKKE 68
+
Sbjct: 72 NKNSGPSS 79
Score = 55.4 bits (133), Expect = 3e-11
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 129 NANGETKRQRTSYTRYQTLELEKEFH----FNRYLTRRRRIEIAHALCLTERQIKIWFQN 184
++ G TKR RT +T Q ++ + + + + +KIW N
Sbjct: 12 SSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHN 71
Query: 185 RRMKWKKE 192
+
Sbjct: 72 NKNSGPSS 79
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 53.6 bits (128), Expect = 1e-10
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 21/78 (26%)
Query: 14 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL---------------------CLTER 52
R + L + + + ++ R + +TE
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 53 QIKIWFQNRRMKWKKEHK 70
++ WF NRR + HK
Sbjct: 61 RVYNWFANRRKEEAFRHK 78
Score = 53.6 bits (128), Expect = 1e-10
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 21/78 (26%)
Query: 138 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL---------------------CLTER 176
R + L + + + ++ R + +TE
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 177 QIKIWFQNRRMKWKKEHK 194
++ WF NRR + HK
Sbjct: 61 RVYNWFANRRKEEAFRHK 78
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 49.0 bits (116), Expect = 7e-09
Identities = 12/63 (19%), Positives = 21/63 (33%)
Query: 8 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
G + T+ Q L+ F ++ R ++ L +I WF + R K
Sbjct: 1 GSSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH 60
Query: 68 EHK 70
Sbjct: 61 GQL 63
Score = 49.0 bits (116), Expect = 7e-09
Identities = 12/63 (19%), Positives = 21/63 (33%)
Query: 132 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
G + T+ Q L+ F ++ R ++ L +I WF + R K
Sbjct: 1 GSSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH 60
Query: 192 EHK 194
Sbjct: 61 GQL 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.132 0.415
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 885,904
Number of extensions: 41577
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 73
Length of query: 222
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,281,736
Effective search space: 179443040
Effective search space used: 179443040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.6 bits)