BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11998
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KHX|A Chain A, Crystal Structure Of A Phosphorylated Smad2
Length = 227
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 86/229 (37%), Gaps = 52/229 (22%)
Query: 20 NVHLFFSPAGERRPGEWCKLAYWELSHRVGRLYPVVTPYIHV--FWAQPCGDGLCLETLA 77
N L P P WC +AY+EL+ RVG + P + V F + CL L+
Sbjct: 18 NHSLDLQPVTYSEPAFWCSIAYYELNQRVGETFHASQPSLTVDGFTDPSNSERFCLGLLS 77
Query: 78 TGNNSAPSGNGPHHVPDAVRRTRTKIGLVVESRRLNPSFGAVCPYTKASGCGYVPGRDRQ 137
N +A V TR IG +
Sbjct: 78 NVNRNA-----------TVEMTRRHIG--------------------------------R 94
Query: 138 GLTLSLEADGVWAYNRSEAPVFVNSXXXXXXXX-XXXXVYRIPPGHCLNIFDPA-----L 191
G+ L V+A S++ +FV S V +IPPG L IF+ L
Sbjct: 95 GVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALL 154
Query: 192 PPRLRESFPAPPTGPVDPNSIRISFAKGWGPKYSRQEITACPAWLEVLL 240
+ + F A +IR+SF KGWG +Y RQ +T+ P W+E+ L
Sbjct: 155 AQSVNQGFEAV-YQLTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHL 202
>pdb|1DEV|A Chain A, Crystal Structure Of Smad2 Mh2 Domain Bound To The Smad-
Binding Domain Of Sara
pdb|1DEV|C Chain C, Crystal Structure Of Smad2 Mh2 Domain Bound To The Smad-
Binding Domain Of Sara
Length = 196
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 85/226 (37%), Gaps = 52/226 (23%)
Query: 23 LFFSPAGERRPGEWCKLAYWELSHRVGRLYPVVTPYIHV--FWAQPCGDGLCLETLATGN 80
L P P WC +AY+EL+ RVG + P + V F + CL L+ N
Sbjct: 1 LDLQPVTYSEPAFWCSIAYYELNQRVGETFHASQPSLTVDGFTDPSNSERFCLGLLSNVN 60
Query: 81 NSAPSGNGPHHVPDAVRRTRTKIGLVVESRRLNPSFGAVCPYTKASGCGYVPGRDRQGLT 140
+A V TR IG +G+
Sbjct: 61 RNA-----------TVEMTRRHIG--------------------------------RGVR 77
Query: 141 LSLEADGVWAYNRSEAPVFVNSXXXXXXXXXX-XXVYRIPPGHCLNIFDPA-----LPPR 194
L V+A S++ +FV S V +IPPG L IF+ L
Sbjct: 78 LYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQS 137
Query: 195 LRESFPAPPTGPVDPNSIRISFAKGWGPKYSRQEITACPAWLEVLL 240
+ + F A +IR+SF KGWG +Y RQ +T+ P W+E+ L
Sbjct: 138 VNQGFEAVYQ-LTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHL 182
>pdb|1U7V|A Chain A, Crystal Structure Of The Phosphorylated Smad2SMAD4
Heterotrimeric Complex
pdb|1U7V|C Chain C, Crystal Structure Of The Phosphorylated Smad2SMAD4
Heterotrimeric Complex
Length = 198
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 83/217 (38%), Gaps = 52/217 (23%)
Query: 32 RPGEWCKLAYWELSHRVGRLYPVVTPYIHV--FWAQPCGDGLCLETLATGNNSAPSGNGP 89
P WC +AY+EL+ RVG + P + V F + CL L+ N +A
Sbjct: 1 EPAFWCSIAYYELNQRVGETFHASQPSLTVDGFTDPSNSERFCLGLLSNVNRNA------ 54
Query: 90 HHVPDAVRRTRTKIGLVVESRRLNPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEADGVW 149
V TR IG +G+ L V+
Sbjct: 55 -----TVEMTRRHIG--------------------------------RGVRLYYIGGEVF 77
Query: 150 AYNRSEAPVFVNSXXXXXXXXXX-XXVYRIPPGHCLNIFDPA-----LPPRLRESFPAPP 203
A S++ +FV S V +IPPG L IF+ L + + F A
Sbjct: 78 AECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVY 137
Query: 204 TGPVDPNSIRISFAKGWGPKYSRQEITACPAWLEVLL 240
+IR+SF KGWG +Y RQ +T+ P W+E+ L
Sbjct: 138 Q-LTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHL 173
>pdb|1MK2|A Chain A, Smad3 Sbd Complex
Length = 206
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 85/224 (37%), Gaps = 52/224 (23%)
Query: 25 FSPAGERRPGEWCKLAYWELSHRVGRLYPVVTPYIHV--FWAQPCGDGLCLETLATGNNS 82
P P WC ++Y+EL+ RVG + P + V F + CL L+ N +
Sbjct: 2 LQPVTYCEPAFWCSISYYELNQRVGETFHASQPSMTVDGFTDPSNSERFCLGLLSNVNRN 61
Query: 83 APSGNGPHHVPDAVRRTRTKIGLVVESRRLNPSFGAVCPYTKASGCGYVPGRDRQGLTLS 142
A AV TR IG +G+ L
Sbjct: 62 A-----------AVELTRRHIG--------------------------------RGVRLY 78
Query: 143 LEADGVWAYNRSEAPVFVNSXXXXXXXXXX-XXVYRIPPGHCLNIFDPA-----LPPRLR 196
V+A S++ +FV S V +IPPG L IF+ L +
Sbjct: 79 YIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQSVN 138
Query: 197 ESFPAPPTGPVDPNSIRISFAKGWGPKYSRQEITACPAWLEVLL 240
+ F A +IR+SF KGWG +Y RQ +T+ P W+E+ L
Sbjct: 139 QGFEAVYQ-LTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHL 181
>pdb|1U7F|A Chain A, Crystal Structure Of The Phosphorylated Smad3SMAD4
Heterotrimeric Complex
pdb|1U7F|C Chain C, Crystal Structure Of The Phosphorylated Smad3SMAD4
Heterotrimeric Complex
Length = 198
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 84/217 (38%), Gaps = 52/217 (23%)
Query: 32 RPGEWCKLAYWELSHRVGRLYPVVTPYIHV--FWAQPCGDGLCLETLATGNNSAPSGNGP 89
P WC ++Y+EL+ RVG + P + V F + CL L+ N +A
Sbjct: 1 EPAFWCSISYYELNQRVGETFHASQPSMTVDGFTDPSNSERFCLGLLSNVNRNA------ 54
Query: 90 HHVPDAVRRTRTKIGLVVESRRLNPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEADGVW 149
AV TR IG +G+ L V+
Sbjct: 55 -----AVELTRRHIG--------------------------------RGVRLYYIGGEVF 77
Query: 150 AYNRSEAPVFVNSXXXXXXXXXX-XXVYRIPPGHCLNIFDPA-----LPPRLRESFPAPP 203
A S++ +FV S V +IPPG L IF+ L + + F A
Sbjct: 78 AECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVY 137
Query: 204 TGPVDPNSIRISFAKGWGPKYSRQEITACPAWLEVLL 240
+IR+SF KGWG +Y RQ +T+ P W+E+ L
Sbjct: 138 Q-LTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHL 173
>pdb|1MJS|A Chain A, Mh2 Domain Of Transcriptional Factor Smad3
Length = 197
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 84/216 (38%), Gaps = 52/216 (24%)
Query: 33 PGEWCKLAYWELSHRVGRLYPVVTPYIHV--FWAQPCGDGLCLETLATGNNSAPSGNGPH 90
P WC ++Y+EL+ RVG + P + V F + CL L+ N +A
Sbjct: 1 PAFWCSISYYELNQRVGETFHASQPSMTVDGFTDPSNSERFCLGLLSNVNRNA------- 53
Query: 91 HVPDAVRRTRTKIGLVVESRRLNPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEADGVWA 150
AV TR IG +G+ L V+A
Sbjct: 54 ----AVELTRRHIG--------------------------------RGVRLYYIGGEVFA 77
Query: 151 YNRSEAPVFVNSXXXXXXXXXX-XXVYRIPPGHCLNIFDPA-----LPPRLRESFPAPPT 204
S++ +FV S V +IPPG L IF+ L + + F A
Sbjct: 78 ECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQ 137
Query: 205 GPVDPNSIRISFAKGWGPKYSRQEITACPAWLEVLL 240
+IR+SF KGWG +Y RQ +T+ P W+E+ L
Sbjct: 138 -LTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHL 172
>pdb|1KHU|A Chain A, Smad1 Crystal Structure Reveals The Details Of Bmp
Signaling Pathway
pdb|1KHU|B Chain B, Smad1 Crystal Structure Reveals The Details Of Bmp
Signaling Pathway
pdb|1KHU|C Chain C, Smad1 Crystal Structure Reveals The Details Of Bmp
Signaling Pathway
pdb|1KHU|D Chain D, Smad1 Crystal Structure Reveals The Details Of Bmp
Signaling Pathway
Length = 218
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 82/219 (37%), Gaps = 53/219 (24%)
Query: 31 RRPGEWCKLAYWELSHRVGRLYPVVTPYIHVF-WAQPCGDG--LCLETLATGNNSAPSGN 87
P WC + Y+EL++RVG + + + V + P + CL L+ N ++
Sbjct: 19 EEPKHWCSIVYYELNNRVGEAFHASSTSVLVDGFTDPSNNKNRFCLGLLSNVNRNS---- 74
Query: 88 GPHHVPDAVRRTRTKIGLVVESRRLNPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEADG 147
+ TR IG +G+ L
Sbjct: 75 -------TIENTRRHIG--------------------------------KGVHLYYVGGE 95
Query: 148 VWAYNRSEAPVFVNSXXXXXXXXXX-XXVYRIPPGHCLNIFDPA-----LPPRLRESFPA 201
V+A S++ +FV S V +IP G L IF+ L + F
Sbjct: 96 VYAECLSDSSIFVQSRNCNYHHGFHPTTVCKIPSGCSLKIFNNQEFAQLLAQSVNHGFET 155
Query: 202 PPTGPVDPNSIRISFAKGWGPKYSRQEITACPAWLEVLL 240
+IR+SF KGWG +Y RQ++T+ P W+E+ L
Sbjct: 156 VYE-LTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHL 193
>pdb|3GMJ|D Chain D, Crystal Structure Of Mad Mh2 Domain
pdb|3GMJ|B Chain B, Crystal Structure Of Mad Mh2 Domain
pdb|3GMJ|A Chain A, Crystal Structure Of Mad Mh2 Domain
pdb|3GMJ|C Chain C, Crystal Structure Of Mad Mh2 Domain
Length = 245
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 83/218 (38%), Gaps = 53/218 (24%)
Query: 32 RPGEWCKLAYWELSHRVGRLYPVVTPYIHVF-WAQPCG--DGLCLETLATGNNSAPSGNG 88
P W +AY+EL+ RVG ++ + V + P D CL L+ N ++
Sbjct: 47 EPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNS----- 101
Query: 89 PHHVPDAVRRTRTKIGLVVESRRLNPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEADGV 148
+ TR IG +G+ L V
Sbjct: 102 ------TIENTRRHIG--------------------------------KGVHLYYVTGEV 123
Query: 149 WAYNRSEAPVFVNSXXXXXXXXXX-XXVYRIPPGHCLNIFDPA-----LPPRLRESFPAP 202
+A S++ +FV S V +IPPG L IF+ L + F A
Sbjct: 124 YAECLSDSAIFVQSRNCNYQHGFHPSTVCKIPPGCSLKIFNNQEFAQLLSQSVNNGFEAV 183
Query: 203 PTGPVDPNSIRISFAKGWGPKYSRQEITACPAWLEVLL 240
+IR+SF KGWG +Y RQ++T+ P W+E+ L
Sbjct: 184 YE-LTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHL 220
>pdb|3DIT|A Chain A, Crystal Structure Of Mad Mh2 Domain
pdb|3DIT|B Chain B, Crystal Structure Of Mad Mh2 Domain
pdb|3DIT|C Chain C, Crystal Structure Of Mad Mh2 Domain
Length = 188
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 82/214 (38%), Gaps = 53/214 (24%)
Query: 36 WCKLAYWELSHRVGRLYPVVTPYIHVF-WAQPCG--DGLCLETLATGNNSAPSGNGPHHV 92
W +AY+EL+ RVG ++ + V + P D CL L+ N ++
Sbjct: 3 WASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNS--------- 53
Query: 93 PDAVRRTRTKIGLVVESRRLNPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEADGVWAYN 152
+ TR IG +G+ L V+A
Sbjct: 54 --TIENTRRHIG--------------------------------KGVHLYYVTGEVYAEC 79
Query: 153 RSEAPVFVNSXXXXXXXXXX-XXVYRIPPGHCLNIFDPA-----LPPRLRESFPAPPTGP 206
S++ +FV S V +IPPG L IF+ L + F A
Sbjct: 80 LSDSAIFVQSRNCNYHHGFHPSTVCKIPPGCSLKIFNNQEFAQLLSQSVNNGFEAVYE-L 138
Query: 207 VDPNSIRISFAKGWGPKYSRQEITACPAWLEVLL 240
+IR+SF KGWG +Y RQ++T+ P W+E+ L
Sbjct: 139 TKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHL 172
>pdb|1DD1|A Chain A, Crystal Structure Analysis Of The Smad4 Active Fragment
pdb|1DD1|B Chain B, Crystal Structure Analysis Of The Smad4 Active Fragment
pdb|1DD1|C Chain C, Crystal Structure Analysis Of The Smad4 Active Fragment
Length = 268
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 92/277 (33%), Gaps = 97/277 (35%)
Query: 13 YWVAHLSNVHLFFSP--AGERRPGEWCKLAYWELSHRVGRLY------PVVTPYIHVFWA 64
YW H L F P + P WC +AY+E+ +VG + P+VT + +
Sbjct: 17 YWPVHNE---LAFQPPISNHPAPEYWCSIAYFEMDVQVGETFKVPSSCPIVT--VDGYVD 71
Query: 65 QPCGDGLCLETLATGNNSAPSGNGPHHVPDAVRRTRTKIGLVVESRRLNPSFGAVCPYTK 124
GD CL L+ H +A+ R R IG
Sbjct: 72 PSGGDRFCLGQLSNV-----------HRTEAIERARLHIG-------------------- 100
Query: 125 ASGCGYVPGRDRQGLTLSLEADG-VWAYNRSEAPVFVNSXXXXXXXXXX--XXVYRIPPG 181
+G+ L + +G VW S+ VFV S V++I P
Sbjct: 101 ------------KGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPS 148
Query: 182 HCLNIFDPALPPRLRE-------------------SFPAP-PTGPVDPNS---------- 211
+ +FD R + + P P G + P
Sbjct: 149 AYIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGV 208
Query: 212 --------IRISFAKGWGPKYSRQEITACPAWLEVLL 240
+R+SF KGWGP Y RQ I P W+E+ L
Sbjct: 209 DDLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHL 245
>pdb|1U7V|B Chain B, Crystal Structure Of The Phosphorylated Smad2SMAD4
Heterotrimeric Complex
Length = 236
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 85/255 (33%), Gaps = 92/255 (36%)
Query: 33 PGEWCKLAYWELSHRVGRLY------PVVTPYIHVFWAQPCGDGLCLETLATGNNSAPSG 86
P WC +AY+E+ +VG + P+VT + + GD CL L+
Sbjct: 7 PEYWCSIAYFEMDVQVGETFKVPSSCPIVT--VDGYVDPSGGDRFCLGQLSNV------- 57
Query: 87 NGPHHVPDAVRRTRTKIGLVVESRRLNPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEAD 146
H +A+ R R IG +G+ L + +
Sbjct: 58 ----HRTEAIERARLHIG--------------------------------KGVQLECKGE 81
Query: 147 G-VWAYNRSEAPVFVNSXXXXXXXXXX--XXVYRIPPGHCLNIFDPALPPRLRE------ 197
G VW S+ VFV S V++I P + +FD R +
Sbjct: 82 GDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATA 141
Query: 198 -------------SFPAP-PTGPVDPNS------------------IRISFAKGWGPKYS 225
+ P P G + P +R+SF KGWGP Y
Sbjct: 142 QAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVDDLRRLCILRMSFVKGWGPDYP 201
Query: 226 RQEITACPAWLEVLL 240
RQ I P W+E+ L
Sbjct: 202 RQSIKETPCWIEIHL 216
>pdb|1MR1|A Chain A, Crystal Structure Of A Smad4-Ski Complex
pdb|1MR1|B Chain B, Crystal Structure Of A Smad4-Ski Complex
Length = 235
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 85/255 (33%), Gaps = 92/255 (36%)
Query: 33 PGEWCKLAYWELSHRVGRLY------PVVTPYIHVFWAQPCGDGLCLETLATGNNSAPSG 86
P WC +AY+E+ +VG + P+VT + + GD CL L+
Sbjct: 3 PEYWCSIAYFEMDVQVGETFKVPSSCPIVT--VDGYVDPSGGDRFCLGQLSNV------- 53
Query: 87 NGPHHVPDAVRRTRTKIGLVVESRRLNPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEAD 146
H +A+ R R IG +G+ L + +
Sbjct: 54 ----HRTEAIERARLHIG--------------------------------KGVQLECKGE 77
Query: 147 G-VWAYNRSEAPVFVNSXXXXXXXXXX--XXVYRIPPGHCLNIFDPALPPRLRE------ 197
G VW S+ VFV S V++I P + +FD R +
Sbjct: 78 GDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATA 137
Query: 198 -------------SFPAP-PTGPVDPNS------------------IRISFAKGWGPKYS 225
+ P P G + P +R+SF KGWGP Y
Sbjct: 138 QAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVDDLRRLCILRMSFVKGWGPDYP 197
Query: 226 RQEITACPAWLEVLL 240
RQ I P W+E+ L
Sbjct: 198 RQSIKETPCWIEIHL 212
>pdb|1U7F|B Chain B, Crystal Structure Of The Phosphorylated Smad3SMAD4
Heterotrimeric Complex
Length = 239
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 85/255 (33%), Gaps = 92/255 (36%)
Query: 33 PGEWCKLAYWELSHRVGRLY------PVVTPYIHVFWAQPCGDGLCLETLATGNNSAPSG 86
P WC +AY+E+ +VG + P+VT + + GD CL L+
Sbjct: 7 PEYWCSIAYFEMDVQVGETFKVPSSCPIVT--VDGYVDPSGGDRFCLGQLSNV------- 57
Query: 87 NGPHHVPDAVRRTRTKIGLVVESRRLNPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEAD 146
H +A+ R R IG +G+ L + +
Sbjct: 58 ----HRTEAIERARLHIG--------------------------------KGVQLECKGE 81
Query: 147 G-VWAYNRSEAPVFVNSXXXXXXXXXX--XXVYRIPPGHCLNIFDPALPPRLRE------ 197
G VW S+ VFV S V++I P + +FD R +
Sbjct: 82 GDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATA 141
Query: 198 -------------SFPAP-PTGPVDPNS------------------IRISFAKGWGPKYS 225
+ P P G + P +R+SF KGWGP Y
Sbjct: 142 QAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVDDLRRLCILRMSFVKGWGPDYP 201
Query: 226 RQEITACPAWLEVLL 240
RQ I P W+E+ L
Sbjct: 202 RQSIKETPCWIEIHL 216
>pdb|1YGS|A Chain A, Crystal Structure Of The Smad4 Tumor Suppressor C-Terminal
Domain
Length = 234
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 85/255 (33%), Gaps = 92/255 (36%)
Query: 33 PGEWCKLAYWELSHRVGRLY------PVVTPYIHVFWAQPCGDGLCLETLATGNNSAPSG 86
P WC +AY+E+ +VG + P+VT + + GD CL L+
Sbjct: 2 PEYWCSIAYFEMDVQVGETFKVPSSCPIVT--VDGYVDPSGGDRFCLGQLSNV------- 52
Query: 87 NGPHHVPDAVRRTRTKIGLVVESRRLNPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEAD 146
H +A+ R R IG +G+ L + +
Sbjct: 53 ----HRTEAIERARLHIG--------------------------------KGVQLECKGE 76
Query: 147 G-VWAYNRSEAPVFVNSXXXXXXXXXX--XXVYRIPPGHCLNIFDPALPPRLRE------ 197
G VW S+ VFV S V++I P + +FD R +
Sbjct: 77 GDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATA 136
Query: 198 -------------SFPAP-PTGPVDPNS------------------IRISFAKGWGPKYS 225
+ P P G + P +R+SF KGWGP Y
Sbjct: 137 QAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVDDLRRLCILRMSFVKGWGPDYP 196
Query: 226 RQEITACPAWLEVLL 240
RQ I P W+E+ L
Sbjct: 197 RQSIKETPCWIEIHL 211
>pdb|1G88|A Chain A, S4afl3arg515 Mutant
pdb|1G88|B Chain B, S4afl3arg515 Mutant
pdb|1G88|C Chain C, S4afl3arg515 Mutant
Length = 268
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 91/277 (32%), Gaps = 97/277 (35%)
Query: 13 YWVAHLSNVHLFFSP--AGERRPGEWCKLAYWELSHRVGRLY------PVVTPYIHVFWA 64
YW H L F P + P WC +AY+E+ +VG + P+VT + +
Sbjct: 17 YWPVHNE---LAFQPPISNHPAPEYWCSIAYFEMDVQVGETFKVPSSCPIVT--VDGYVD 71
Query: 65 QPCGDGLCLETLATGNNSAPSGNGPHHVPDAVRRTRTKIGLVVESRRLNPSFGAVCPYTK 124
GD CL L+ H +A+ R R IG
Sbjct: 72 PSGGDRFCLGQLSNV-----------HRTEAIERARLHIG-------------------- 100
Query: 125 ASGCGYVPGRDRQGLTLSLEADG-VWAYNRSEAPVFVNSXXXXXXXXXX--XXVYRIPPG 181
+G+ L + +G VW S+ VFV S V++I P
Sbjct: 101 ------------KGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPS 148
Query: 182 HCLNIFDPALPPRLRE-------------------SFPAP-PTGPVDPNS---------- 211
+ +FD R + + P P G + P
Sbjct: 149 AYIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGV 208
Query: 212 --------IRISFAKGWGPKYSRQEITACPAWLEVLL 240
+R+SF KGWGP Y Q I P W+E+ L
Sbjct: 209 DDLRRLCILRMSFVKGWGPDYPSQSIKETPCWIEIHL 245
>pdb|3VA6|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt4673 From B.
Thetaiotaomicron
pdb|3VA6|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt4673 From B.
Thetaiotaomicron
Length = 758
Score = 28.5 bits (62), Expect = 3.7, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 10 KFYYWVAHLSNVHLFFSPAGERRPGEWCKLA--YWELSH-RVGRLY 52
K +YW + + F PAGER W ++ + LSH R+ +Y
Sbjct: 334 KGFYWFGGANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIY 379
>pdb|3OTT|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative One Component System Bt4673 From B.
Thetaiotaomicron
pdb|3OTT|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative One Component System Bt4673 From B.
Thetaiotaomicron
Length = 758
Score = 28.5 bits (62), Expect = 3.7, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 10 KFYYWVAHLSNVHLFFSPAGERRPGEWCKLA--YWELSH-RVGRLY 52
K +YW + + F PAGER W ++ + LSH R+ +Y
Sbjct: 334 KGFYWFGGANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIY 379
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.478
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,111,305
Number of Sequences: 62578
Number of extensions: 323431
Number of successful extensions: 516
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 32
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)