Query psy11998
Match_columns 245
No_of_seqs 116 out of 221
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 16:00:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11998.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11998hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00050 MH2 MH2 domain; C term 100.0 1.2E-71 2.7E-76 478.8 16.6 168 31-241 2-176 (176)
2 smart00524 DWB Domain B in dwa 100.0 1.7E-70 3.7E-75 470.0 16.6 164 35-241 1-171 (171)
3 PF03166 MH2: MH2 domain; Int 100.0 1.8E-65 3.8E-70 437.8 7.9 170 31-243 1-181 (181)
4 KOG3701|consensus 100.0 1.7E-63 3.7E-68 471.7 17.9 172 29-243 219-396 (411)
5 PF10401 IRF-3: Interferon-reg 97.0 0.0031 6.8E-08 53.8 8.2 94 138-240 75-169 (180)
6 PF00498 FHA: FHA domain; Int 45.7 91 0.002 21.5 5.8 50 131-185 15-66 (68)
7 smart00240 FHA Forkhead associ 19.4 1.6E+02 0.0034 19.0 3.1 25 138-162 23-49 (52)
8 PRK15308 putative fimbrial pro 17.3 1.4E+02 0.003 27.4 3.2 24 139-162 23-51 (234)
9 PF06577 DUF1134: Protein of u 14.7 2.5E+02 0.0054 24.8 3.9 91 138-236 51-158 (160)
10 COG5400 Uncharacterized protei 14.0 3.6E+02 0.0077 24.4 4.8 48 141-195 99-147 (205)
No 1
>cd00050 MH2 MH2 domain; C terminal domain of SMAD family proteins, responsible for receptor interaction, transactivation, and homo- and heterooligomerisation; also known as Domain B in dwarfin family proteins
Probab=100.00 E-value=1.2e-71 Score=478.80 Aligned_cols=168 Identities=44% Similarity=0.795 Sum_probs=160.7
Q ss_pred CCCCceeEEEEEeeccccccceeeeCCeEEE--EeCCCCCCceeeccccCCCCCCCCCCCCCCCChhHHHHHHhcccchh
Q psy11998 31 RRPGEWCKLAYWELSHRVGRLYPVVTPYIHV--FWAQPCGDGLCLETLATGNNSAPSGNGPHHVPDAVRRTRTKIGLVVE 108 (245)
Q Consensus 31 ~~~~~WC~iaY~El~~rVGe~f~~~~~~v~V--f~dp~~~~rfcLg~lsnv~~~~~~~~~~~~r~~~v~~tR~~IG~~~~ 108 (245)
.+|++||+||||||++||||+|++++|+++| |+||++++|||||+|+|+ +|++++++||+|||+
T Consensus 2 ~~~~~WCsIaY~El~~RVGe~f~~~~~~~~VDGf~d~~~~~rfcLg~lsn~-----------~R~~~ve~~R~~IG~--- 67 (176)
T cd00050 2 SEPEHWCSIAYYELNTRVGETFKVSGPNITVDGFTDPSNGSRFCLGQLSNV-----------NRNETVEKTRRHIGK--- 67 (176)
T ss_pred CCCCceEEEEEEEccceecccEeccCCcEEEEecccCCCCCEEEecccCCC-----------CCcHHHHHHHHhccC---
Confidence 5789999999999999999999999988888 999999999999999999 999999999999999
Q ss_pred hccCCCCCCCccCcccCCCCCCCCCCCCCCeEEEEECCeEEEEecCCCceeecCCCCCCCCC-CCcceEEcCCCCEEEEe
Q psy11998 109 SRRLNPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEADGVWAYNRSEAPVFVNSPGLDDPGP-PTLLVYRIPPGHCLNIF 187 (245)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~L~~~~~~Vw~~n~S~~pIFV~Sp~ln~~~~-~~~tV~KIppG~slKIF 187 (245)
||+|++++|+||++|+|++|||||||+||.+.+ ++++||||+||++||||
T Consensus 68 -----------------------------Gv~L~~~~g~Vw~~~~S~~~VFVqS~~l~~~~~~~~~~V~Kv~pg~~lKvF 118 (176)
T cd00050 68 -----------------------------GVQLSYENGEVWAYNLSDHPIFVQSPTLDYPLGRPLLTVHKVPPGYSLKVF 118 (176)
T ss_pred -----------------------------CEEEEEeCCeEEEEEcCCCCEEEcCCCCCcccCCCCcceEEeCCCCEEEEe
Confidence 999999999999999999999999999999965 69999999999999999
Q ss_pred CCCC-chhhhhcCCCCCCccccCc---eeEEeeeecCCCCCCCCCcccCCeEEEEEec
Q psy11998 188 DPAL-PPRLRESFPAPPTGPVDPN---SIRISFAKGWGPKYSRQEITACPAWLEVLLV 241 (245)
Q Consensus 188 d~~~-~~~L~qs~~~~~~gvydL~---~IRISFVKGWG~eY~RQ~ITstPCWIEIhL~ 241 (245)
|+++ +++|+++.+++++++|||+ .||||||||||++|+||+||+||||||||||
T Consensus 119 d~~~f~~~l~~~~~~~~~~~~~l~~~c~iriSFvKGWG~~Y~Rq~it~tPCWiEi~l~ 176 (176)
T cd00050 119 DFEQFEQLLRQAAGSTFDGVYDLRRMCTIRISFVKGWGEDYPRQDITSTPCWIEVHLN 176 (176)
T ss_pred CHHHHHHHHHhhhcccCccHHHHHhhceEEEEEeccccccccccccCCCceEEEEEcC
Confidence 9999 6677888889999999995 5999999999999999999999999999997
No 2
>smart00524 DWB Domain B in dwarfin family proteins.
Probab=100.00 E-value=1.7e-70 Score=469.98 Aligned_cols=164 Identities=43% Similarity=0.797 Sum_probs=157.2
Q ss_pred ceeEEEEEeeccccccceeeeCCeEEE--EeCCCCCCceeeccccCCCCCCCCCCCCCCCChhHHHHHHhcccchhhccC
Q psy11998 35 EWCKLAYWELSHRVGRLYPVVTPYIHV--FWAQPCGDGLCLETLATGNNSAPSGNGPHHVPDAVRRTRTKIGLVVESRRL 112 (245)
Q Consensus 35 ~WC~iaY~El~~rVGe~f~~~~~~v~V--f~dp~~~~rfcLg~lsnv~~~~~~~~~~~~r~~~v~~tR~~IG~~~~~~~~ 112 (245)
+||+||||||++||||+|++++|+|+| |+||++++|||||+|+|+ ||++++++||+|||+
T Consensus 1 ~WcsIaYyEl~~rVGe~f~~~~p~v~Vdgf~d~~~~~rfcLg~lsn~-----------nR~~~~~~~R~~IG~------- 62 (171)
T smart00524 1 SWCSIAYYELNTRVGETFKVSSPSVTVDGFTDPSDGNRFCLGQLSNV-----------NRNEATELIRKHIGK------- 62 (171)
T ss_pred CCcEEEEEEecccccceEEccCCeEEEEecccCCCCCeeEeccCCCC-----------CccHHHHHHHHhccC-------
Confidence 599999999999999999999998777 999999999999999999 999999999999999
Q ss_pred CCCCCCccCcccCCCCCCCCCCCCCCeEEEEECCeEEEEecCCCceeecCCCCCCCCC-CCcceEEcCCCCEEEEeCCCC
Q psy11998 113 NPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEADGVWAYNRSEAPVFVNSPGLDDPGP-PTLLVYRIPPGHCLNIFDPAL 191 (245)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~Gi~L~~~~~~Vw~~n~S~~pIFV~Sp~ln~~~~-~~~tV~KIppG~slKIFd~~~ 191 (245)
||+|++++|+||++|+|++|||||||+||.+++ ++++|+|||||++|||||+++
T Consensus 63 -------------------------Gv~L~~~~g~Vw~~~~s~~~VFVqS~~~~~~~~~~~~~V~Kv~pg~~lKvFd~~~ 117 (171)
T smart00524 63 -------------------------GVQLSYENGDVWLYNRSDSPIFVQSPYLDEPGGRTLDTVHKLPPGYSIKVFDMEK 117 (171)
T ss_pred -------------------------ceEEEEeCCeEEEEEcCCCCeEEcCCCcccccCCCCcceEEECCCCeEEEeChHH
Confidence 999999999999999999999999999999854 788999999999999999999
Q ss_pred -chhhhhcCCCCCCccccCc---eeEEeeeecCCCCCCCCCcccCCeEEEEEec
Q psy11998 192 -PPRLRESFPAPPTGPVDPN---SIRISFAKGWGPKYSRQEITACPAWLEVLLV 241 (245)
Q Consensus 192 -~~~L~qs~~~~~~gvydL~---~IRISFVKGWG~eY~RQ~ITstPCWIEIhL~ 241 (245)
+++|++..+++++++|||+ .||||||||||++|+||+||+||||||||||
T Consensus 118 f~~~l~~~~~~~~~~~~~l~~~c~iriSFvKGWG~~Y~Rq~it~tPCWiEi~l~ 171 (171)
T smart00524 118 FAQLLARELAKGFEGVYDLARMCTIRISFVKGWGPDYSRQTITSTPCWIEVHLN 171 (171)
T ss_pred HHHHHHhhhcccCccccchhhheeEEEEEecccCCcccccccccCceEEEEEcC
Confidence 6677888889999999999 5999999999999999999999999999997
No 3
>PF03166 MH2: MH2 domain; InterPro: IPR001132 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth []. The dwarfin family also includes the Drosophila protein MAD that is required for the function of decapentaplegic (DPP) and may play a role in DPP signalling. Drosophila Mad binds to DNA and directly mediates activation of vestigial by Dpp []. This domain is also found in nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF). This entry represents the SMAD (Mothers against decapentaplegic (MAD) homologue) (also called MH2 for MAD homology 2) domain found at the carboxy terminus of MAD related proteins such as Smads. This domain is separated from the MH1 domain by a non-conserved linker region. The MH2 domain mediates interaction with a wide variety of proteins and provides specificity and selectivity to Smad function and also is critical for mediating interactions in Smad oligomers. Unlike MH1, MH2 does not bind DNA. The well-studied MH2 domain of Smad4 is composed of five alpha helices and three loops enclosing a beta sandwich. Smads are involved in the propagation of TGF-beta signals by direct association with the TGF-beta receptor kinase which phosphorylates the last two Ser of a conserved 'SSXS' motif located at the C terminus of MH2 [, , ].; GO: 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1MK2_A 1U7F_A 1MJS_A 1KHU_A 1DD1_C 1G88_A 1U7V_B 1MR1_B 1YGS_A 3DIT_B ....
Probab=100.00 E-value=1.8e-65 Score=437.76 Aligned_cols=170 Identities=39% Similarity=0.758 Sum_probs=143.9
Q ss_pred CCCCceeEEEEEeeccccccceeeeCCeEEE--EeCCCCCCceeeccccCCCCCCCCCCCCCCCChhHHHHHHhcccchh
Q psy11998 31 RRPGEWCKLAYWELSHRVGRLYPVVTPYIHV--FWAQPCGDGLCLETLATGNNSAPSGNGPHHVPDAVRRTRTKIGLVVE 108 (245)
Q Consensus 31 ~~~~~WC~iaY~El~~rVGe~f~~~~~~v~V--f~dp~~~~rfcLg~lsnv~~~~~~~~~~~~r~~~v~~tR~~IG~~~~ 108 (245)
++++.||+|+|||+++||||+|++++++|+| |+||++++|||||.|+|+ +|+++++++|+|||+
T Consensus 1 ~~~~~Wc~I~Y~E~~~rVG~~f~~~~~~v~idG~~d~~~~~r~~Lg~~~n~-----------~R~~~~~~~R~~IG~--- 66 (181)
T PF03166_consen 1 EEPEIWCSIAYYELNTRVGEAFKARSPSVIIDGFTDPSDGDRFCLGQLSNV-----------NRDSKTEKIRRHIGK--- 66 (181)
T ss_dssp -S-SSSEEEEEEETTEEESEEEEEESSEEEEESSSSSSSSSEEECTT---T-----------T--HHHHHHHTTCTT---
T ss_pred CCCCeeEEEEEEecCCeEcceeEccCCeEEEeeccCCCCCCcEecCccCCC-----------CCChHHhhHHheecC---
Confidence 4789999999999999999999999999999 999999999999999999 999999999999999
Q ss_pred hccCCCCCCCccCcccCCCCCCCCCCCCCCeEEEEECC-eEEEEecCCCceeecCCCCCCCCC-CCcceEEcCCCCEEEE
Q psy11998 109 SRRLNPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEAD-GVWAYNRSEAPVFVNSPGLDDPGP-PTLLVYRIPPGHCLNI 186 (245)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~L~~~~~-~Vw~~n~S~~pIFV~Sp~ln~~~~-~~~tV~KIppG~slKI 186 (245)
||+|+++++ .||++|+|++|||||||++|.+.+ ++++|+||+||+++||
T Consensus 67 -----------------------------Gi~l~~~~~G~V~l~n~s~~pVFVqS~~~n~~~~~~~~~V~Kv~pg~~~kv 117 (181)
T PF03166_consen 67 -----------------------------GIKLSYEEDGNVWLYNRSDSPVFVQSPTLNYQHGFHPGTVCKVPPGYSLKV 117 (181)
T ss_dssp ------------------------------EEEEEETTTEEEEEE-SSS-EEEE-HHHHHHTTSTTTSEEEE-TT-EEEE
T ss_pred -----------------------------cEEEEEecCCeEEEEECCCCCEEEccCCCCcccCcCCCCcEEeCCCceeec
Confidence 999999955 599999999999999999999866 8999999999999999
Q ss_pred eCCCC-chhhhhcCCCCCC---ccccCce---eEEeeeecCCCCCCCCCcccCCeEEEEEeccC
Q psy11998 187 FDPAL-PPRLRESFPAPPT---GPVDPNS---IRISFAKGWGPKYSRQEITACPAWLEVLLVPA 243 (245)
Q Consensus 187 Fd~~~-~~~L~qs~~~~~~---gvydL~~---IRISFVKGWG~eY~RQ~ITstPCWIEIhL~~~ 243 (245)
||+++ +++|++...++++ ++++|.+ ||||||||||++|+||+||+||||||||||.+
T Consensus 118 Fd~~~f~~~l~~~~~~~~~~~~~~~~l~~~c~iriSFvKGWG~~Y~R~~it~~PCWiEi~l~~p 181 (181)
T PF03166_consen 118 FDMEKFAQLLRQAVRRGYEAEEDVDELRKMCTIRISFVKGWGPEYRRQDITSCPCWIEIHLNGP 181 (181)
T ss_dssp EEHHHHHHHHHHHHTTHHHHTTTHHGGGGGGEEEEEESSB-STTSSSSSGGGSSSEEEEEEHH-
T ss_pred cCHHHHHHHHHhhhccccccccchhhhhhcceEEEEEEcccCCcccccCcccCCeEEEEEccCC
Confidence 99999 6778887776654 4676664 99999999999999999999999999999863
No 4
>KOG3701|consensus
Probab=100.00 E-value=1.7e-63 Score=471.75 Aligned_cols=172 Identities=40% Similarity=0.702 Sum_probs=164.8
Q ss_pred CCCCCCceeEEEEEeeccccccceeeeCCeEEE--EeCCCCCCceeeccccCCCCCCCCCCCCCCCChhHHHHHHhcccc
Q psy11998 29 GERRPGEWCKLAYWELSHRVGRLYPVVTPYIHV--FWAQPCGDGLCLETLATGNNSAPSGNGPHHVPDAVRRTRTKIGLV 106 (245)
Q Consensus 29 ~~~~~~~WC~iaY~El~~rVGe~f~~~~~~v~V--f~dp~~~~rfcLg~lsnv~~~~~~~~~~~~r~~~v~~tR~~IG~~ 106 (245)
.+++++.||+|+||||++||||+|+|..++++| |+||++++|||||+|+|+ +|+++++++|+|||+
T Consensus 219 ~~~~~~~WcsIaYyEl~~rVGE~f~v~~~~~~vDG~~dps~~~rfcLgqlsn~-----------~Rn~~~e~~R~~IG~- 286 (411)
T KOG3701|consen 219 HYEEPKSWCSIAYYELNTRVGETFHVPGPSITVDGFTDPSNGSRFCLGQLSNV-----------NRNEKVEKTRAHIGK- 286 (411)
T ss_pred cccCCcceeEEEEeeccccccceEEecCCceEEeeeecCCCCCceeeccccCC-----------CccchhHHHHhhccC-
Confidence 888999999999999999999999999998988 999999999999999999 999999999999999
Q ss_pred hhhccCCCCCCCccCcccCCCCCCCCCCCCCCeEEEEECCeEEEEecCCCceeecCCCCCCCCC-CCcceEEcCCCCEEE
Q psy11998 107 VESRRLNPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEADGVWAYNRSEAPVFVNSPGLDDPGP-PTLLVYRIPPGHCLN 185 (245)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~L~~~~~~Vw~~n~S~~pIFV~Sp~ln~~~~-~~~tV~KIppG~slK 185 (245)
||+|++++|+||+||+|+.||||||++||++.+ ++++||||+||++||
T Consensus 287 -------------------------------GV~L~~~~gdVw~~n~sd~pIFVqS~~ln~~~g~~~~~v~ki~Pg~~iK 335 (411)
T KOG3701|consen 287 -------------------------------GVQLSYENGDVWLYNLSDYPIFVQSPNLNYPNGRTLDTVHKVPPGYSIK 335 (411)
T ss_pred -------------------------------ceeeeEecCcEEEEecCCCceeeeCCCCcCCCCCcccceEeeCCCceeE
Confidence 999999999999999999999999999999965 678999999999999
Q ss_pred EeCCCCchhhhhcCCCCCCccccCce---eEEeeeecCCCCCCCCCcccCCeEEEEEeccC
Q psy11998 186 IFDPALPPRLRESFPAPPTGPVDPNS---IRISFAKGWGPKYSRQEITACPAWLEVLLVPA 243 (245)
Q Consensus 186 IFd~~~~~~L~qs~~~~~~gvydL~~---IRISFVKGWG~eY~RQ~ITstPCWIEIhL~~~ 243 (245)
|||++.+++|+++..++++++++|++ ||||||||||++|+||+||+||||||||||.+
T Consensus 336 vFd~~~~~~l~~s~~~g~~~~~~l~~~ctIriSFvKGWG~~Y~Rq~It~~PCWiEvhl~~p 396 (411)
T KOG3701|consen 336 VFDFEFAQQLPTSADPGFESVDQLRKMCTIRISFVKGWGECYSRQDITSTPCWIEVHLNGP 396 (411)
T ss_pred eechHHHhhhhhcccCCCccccccccceeEEEEEeccccccccccccccCcceEEEecCCc
Confidence 99995588899999999999998876 99999999999999999999999999999975
No 5
>PF10401 IRF-3: Interferon-regulatory factor 3; InterPro: IPR019471 This is the interferon-regulatory factor 3 chain of the hetero-dimeric structure which also contains the shorter chain CREB-binding protein. These two subunits make up the DRAF1 (double-stranded RNA-activated factor 1). Viral dsRNA produced during viral transcription or replication leads to the activation of DRAF1. The DNA-binding specificity of DRAF1 correlates with transcriptional induction of ISG (interferon-alpha, beta-stimulated gene). IRF-3 pre-exists in the cytoplasm of uninfected cells and translocates to the nucleus following viral infection. Translocation of IRF-3 is accompanied by an increase in serine and threonine phosphorylation, and association with the CREB coactivator occurs only after infection. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1J2F_A 1QWT_A 3A77_B 1ZOQ_A 3DSH_A.
Probab=97.05 E-value=0.0031 Score=53.81 Aligned_cols=94 Identities=17% Similarity=0.214 Sum_probs=62.7
Q ss_pred CeEEEEECCeEEEEecCCCceeecCCCCCCCCCCCcceEEcCCCCEEEEeCCCC-chhhhhcCCCCCCccccCceeEEee
Q psy11998 138 GLTLSLEADGVWAYNRSEAPVFVNSPGLDDPGPPTLLVYRIPPGHCLNIFDPAL-PPRLRESFPAPPTGPVDPNSIRISF 216 (245)
Q Consensus 138 Gi~L~~~~~~Vw~~n~S~~pIFV~Sp~ln~~~~~~~tV~KIppG~slKIFd~~~-~~~L~qs~~~~~~gvydL~~IRISF 216 (245)
||.|...++++|+.++....||...+...... .-.|+..+...||||.++ ...|++....+...+. ..|.++|
T Consensus 75 Gl~L~~~~~gI~akRlc~~~Vfw~g~~~~~~~----~P~kL~r~~~~~lFd~~~F~~~L~~~~~~~~~~P~--~~i~Lcf 148 (180)
T PF10401_consen 75 GLLLWSNPQGIYAKRLCQCRVFWSGPEAPPSD----EPNKLEREEPVKLFDTQQFLRELQRFPQGGGPSPD--YQIYLCF 148 (180)
T ss_dssp -EEEEEETTEEEEEE-SSS-EEEECCTSS-S-----S-SE--CTS-EEEEEHHHHHHHHHHHHTTSSS------EEEEEE
T ss_pred cEEEEEeCCEEEEEecCCceEEEEcCCccCCC----CCcccCcCCceeeccHHHHHHHHHHHhcCCCCCCC--cEEEEEE
Confidence 99999999999999999999999887755433 344899999999999999 6677665433222222 1588888
Q ss_pred eecCCCCCCCCCcccCCeEEEEEe
Q psy11998 217 AKGWGPKYSRQEITACPAWLEVLL 240 (245)
Q Consensus 217 VKGWG~eY~RQ~ITstPCWIEIhL 240 (245)
+.=|-.+ +..+..+-+++|..
T Consensus 149 Ge~~~~~---~~~~~klI~v~v~p 169 (180)
T PF10401_consen 149 GEEWPDG---RPWEKKLITVQVEP 169 (180)
T ss_dssp SSSSTTS---SCCCCSSEEEEEEE
T ss_pred cccCCCC---CCccCceEEEEEEe
Confidence 7766542 66777788887764
No 6
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=45.66 E-value=91 Score=21.54 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=32.6
Q ss_pred CCCCCCCCeEEEEECC-eEEEEec-CCCceeecCCCCCCCCCCCcceEEcCCCCEEE
Q psy11998 131 VPGRDRQGLTLSLEAD-GVWAYNR-SEAPVFVNSPGLDDPGPPTLLVYRIPPGHCLN 185 (245)
Q Consensus 131 ~~~~~~~Gi~L~~~~~-~Vw~~n~-S~~pIFV~Sp~ln~~~~~~~tV~KIppG~slK 185 (245)
.|..++.=..|.++++ .+|+.++ |...+||+.-.+. +..-++|.+|..++
T Consensus 15 ~~~iSr~Ha~i~~~~~~~~~i~d~~s~ngt~vng~~l~-----~~~~~~L~~gd~i~ 66 (68)
T PF00498_consen 15 DPSISRRHARISFDDDGQFYIEDLGSTNGTFVNGQRLG-----PGEPVPLKDGDIIR 66 (68)
T ss_dssp STTSSTTSEEEEEETTEEEEEEESSSSS-EEETTEEES-----STSEEEE-TTEEEE
T ss_pred CHheeeeeeEEEEeceeeEEEEeCCCCCcEEECCEEcC-----CCCEEECCCCCEEE
Confidence 4556677789999999 7999996 7999999642221 23345555555443
No 7
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=19.40 E-value=1.6e+02 Score=19.03 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=20.5
Q ss_pred CeEEEEECCe-EEEEecC-CCceeecC
Q psy11998 138 GLTLSLEADG-VWAYNRS-EAPVFVNS 162 (245)
Q Consensus 138 Gi~L~~~~~~-Vw~~n~S-~~pIFV~S 162 (245)
=.+|.++.++ +++.+.+ ...+||+.
T Consensus 23 H~~i~~~~~~~~~i~d~~s~~gt~vng 49 (52)
T smart00240 23 HAEIVYDGGGRFYLIDLGSTNGTFVNG 49 (52)
T ss_pred HcEEEECCCCeEEEEECCCCCCeeECC
Confidence 3578888887 9999987 89999975
No 8
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=17.28 E-value=1.4e+02 Score=27.36 Aligned_cols=24 Identities=17% Similarity=0.517 Sum_probs=18.1
Q ss_pred eEEEEECC-----eEEEEecCCCceeecC
Q psy11998 139 LTLSLEAD-----GVWAYNRSEAPVFVNS 162 (245)
Q Consensus 139 i~L~~~~~-----~Vw~~n~S~~pIFV~S 162 (245)
|++..+++ .+|++|.++.+.||+=
T Consensus 23 i~~~i~a~~~~~~~v~V~N~g~~~~~vqV 51 (234)
T PRK15308 23 MAAEIGAGREEATSLFVYSKSDHTQYVRT 51 (234)
T ss_pred eEEEecCCCcceEEEEEEeCCCCcEEEEE
Confidence 34555543 6999999999999863
No 9
>PF06577 DUF1134: Protein of unknown function (DUF1134); InterPro: IPR008325 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=14.70 E-value=2.5e+02 Score=24.77 Aligned_cols=91 Identities=19% Similarity=0.261 Sum_probs=53.6
Q ss_pred CeEEEEECCeEEEEecCCCceeecCCCCCCC-CCCCcceEEcCCCCEEEEeCCCCchhhhhcCCCCCCc---------c-
Q psy11998 138 GLTLSLEADGVWAYNRSEAPVFVNSPGLDDP-GPPTLLVYRIPPGHCLNIFDPALPPRLRESFPAPPTG---------P- 206 (245)
Q Consensus 138 Gi~L~~~~~~Vw~~n~S~~pIFV~Sp~ln~~-~~~~~tV~KIppG~slKIFd~~~~~~L~qs~~~~~~g---------v- 206 (245)
++-|.|-.+.++..|..+++||.|.|.+-.. +.....| -+-|+|+...+.|=++-. +.++ .
T Consensus 51 ~~GlrYGeG~L~~k~~g~~~vyWqGPSiG~D~G~~~~r~-------~~LVYnL~~~~~iy~Rf~-gv~GsAYlvgG~G~~ 122 (160)
T PF06577_consen 51 VVGLRYGEGTLYTKNAGQHKVYWQGPSIGFDFGGNGSRV-------FMLVYNLPDPDDIYQRFP-GVEGSAYLVGGVGMT 122 (160)
T ss_pred EEEEEecccEEEEcCCCeeEEEEeCCceeEeecCCceEE-------EEEEEcCCCHHHHhhhCC-CccceEEEEccceEE
Confidence 4667776666899999999999999988754 2233222 345788887666644311 1111 0
Q ss_pred ----ccCceeEEeeeecC--CCCCCCCCcccCCeEE
Q psy11998 207 ----VDPNSIRISFAKGW--GPKYSRQEITACPAWL 236 (245)
Q Consensus 207 ----ydL~~IRISFVKGW--G~eY~RQ~ITstPCWI 236 (245)
.|..-+.|....|| |..---...|..|-|.
T Consensus 123 ~l~~~~ivl~PIR~GvG~RLG~nvGYl~fT~~~twn 158 (160)
T PF06577_consen 123 YLRNGDIVLAPIRTGVGARLGANVGYLKFTRKPTWN 158 (160)
T ss_pred EEEeCCEEEEEeecCcceeeeeeeeeEeecCCCCcC
Confidence 12223566666665 4433335666666663
No 10
>COG5400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=14.00 E-value=3.6e+02 Score=24.45 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=34.5
Q ss_pred EEEECCeEEEEecCCCceeecCCCCCCC-CCCCcceEEcCCCCEEEEeCCCCchhh
Q psy11998 141 LSLEADGVWAYNRSEAPVFVNSPGLDDP-GPPTLLVYRIPPGHCLNIFDPALPPRL 195 (245)
Q Consensus 141 L~~~~~~Vw~~n~S~~pIFV~Sp~ln~~-~~~~~tV~KIppG~slKIFd~~~~~~L 195 (245)
|.|-++..|..|..+++||-|-|.+--. ++....| -|-|+|++....|
T Consensus 99 ltYGeG~LytKn~g~h~vFWQGPslGwD~GGqgsRv-------mmLvYnL~~v~al 147 (205)
T COG5400 99 LTYGEGTLYTKNAGDHKVFWQGPSLGWDWGGQGSRV-------MMLVYNLDDVDAL 147 (205)
T ss_pred eeeccceEEecCCCCcceEeeCCccccccCCCceEE-------EEEEecCCCHHHH
Confidence 4566667899999999999999987654 3344333 3568898885544
Done!