Query psy11998
Match_columns 245
No_of_seqs 116 out of 221
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 16:00:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gmj_D Protein mothers against 100.0 2E-71 6.7E-76 496.6 10.0 178 23-243 38-223 (245)
2 1khx_A SMAD2; TGF-beta signali 100.0 5.3E-70 1.8E-74 482.9 10.0 179 22-243 20-205 (227)
3 1dd1_A SMAD4; B-sheet sandwich 100.0 1.1E-66 3.8E-71 470.9 12.1 191 9-243 13-248 (268)
4 1ygs_A SMAD4; tumor suppressor 100.0 4.2E-66 1.5E-70 459.5 10.7 169 32-243 1-214 (234)
5 3a77_A IRF-3, interferon regul 96.0 0.033 1.1E-06 49.5 9.3 149 34-222 16-169 (242)
6 3dsh_A IRF-5, interferon regul 94.8 0.075 2.6E-06 47.3 7.6 79 138-221 93-173 (246)
7 3r2v_A PB2 C-terminal subunit; 30.6 37 0.0013 29.2 3.4 42 107-163 82-123 (216)
8 4dag_A Fusion glycoprotein F0; 15.9 41 0.0014 32.0 0.8 12 228-239 260-271 (415)
9 2xt9_B Putative signal transdu 13.8 3.5E+02 0.012 19.9 5.4 34 132-165 48-82 (115)
10 3kb5_A Tripartite motif-contai 13.5 67 0.0023 26.6 1.4 28 134-161 133-164 (193)
No 1
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster}
Probab=100.00 E-value=2e-71 Score=496.64 Aligned_cols=178 Identities=30% Similarity=0.513 Sum_probs=163.0
Q ss_pred eccCCCCCCCCCceeEEEEEeeccccccceeeeCCeEEE--EeCCCCC-CceeeccccCCCCCCCCCCCCCCCChhHHHH
Q psy11998 23 LFFSPAGERRPGEWCKLAYWELSHRVGRLYPVVTPYIHV--FWAQPCG-DGLCLETLATGNNSAPSGNGPHHVPDAVRRT 99 (245)
Q Consensus 23 ~~~~~~~~~~~~~WC~iaY~El~~rVGe~f~~~~~~v~V--f~dp~~~-~rfcLg~lsnv~~~~~~~~~~~~r~~~v~~t 99 (245)
..++|+.++++++||+||||||++||||+|+|++++|+| |+||+++ +|||||+|+|+ +|++++++|
T Consensus 38 ~~~~~v~y~ep~~WcsIaYyEln~RVGe~F~a~~~sv~IDGf~dps~~~~RfcLg~lsNv-----------~R~~~ve~t 106 (245)
T 3gmj_D 38 GDVAQVSYSEPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNSDRCCLGQLSNV-----------NRNSTIENT 106 (245)
T ss_dssp ---------CCSCSEEEEEEETTEEEEEEEEECSSEEEEESSCCCCTTTSEEEGGGCCCT-----------TCCHHHHHH
T ss_pred CccccccccCCCceeEEEEeecCceeccceeecCCeEEEeCCcCCCCCCCceeecCccCC-----------CCcHHHHHH
Confidence 468899999999999999999999999999999999999 9999987 99999999999 999999999
Q ss_pred HHhcccchhhccCCCCCCCccCcccCCCCCCCCCCCCCCeEEEEECCeEEEEecCCCceeecCCCCCCC-CCCCcceEEc
Q psy11998 100 RTKIGLVVESRRLNPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEADGVWAYNRSEAPVFVNSPGLDDP-GPPTLLVYRI 178 (245)
Q Consensus 100 R~~IG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~L~~~~~~Vw~~n~S~~pIFV~Sp~ln~~-~~~~~tV~KI 178 (245)
|+|||+ ||+|++++|+||++|+|++|||||||+||.+ +.++++||||
T Consensus 107 R~~IG~--------------------------------GV~L~~~~G~V~~~nlS~~~IFVqS~~~n~~~g~~~~tV~KI 154 (245)
T 3gmj_D 107 RRHIGK--------------------------------GVHLYYVTGEVYAECLSDSAIFVQSRNCNYQHGFHPSTVCKI 154 (245)
T ss_dssp HHHHTT--------------------------------CEEEEEETTEEEEEECSSSCEEEEEHHHHHHTTCCTTCCEEE
T ss_pred HHHHhc--------------------------------CeEEEEECCEEEEEecCCCcEEECCCcccccCCCCccceEEe
Confidence 999999 9999999999999999999999999999986 4689999999
Q ss_pred CCCCEEEEeCCCC-chhhhhcCCCCCCccccCce---eEEeeeecCCCCCCCCCcccCCeEEEEEeccC
Q psy11998 179 PPGHCLNIFDPAL-PPRLRESFPAPPTGPVDPNS---IRISFAKGWGPKYSRQEITACPAWLEVLLVPA 243 (245)
Q Consensus 179 ppG~slKIFd~~~-~~~L~qs~~~~~~gvydL~~---IRISFVKGWG~eY~RQ~ITstPCWIEIhL~~~ 243 (245)
+||+++||||+++ +++|+|+++++++++|+|++ ||||||||||++|+||+||+||||||||||.|
T Consensus 155 ~pg~slKiFd~~~fa~~L~qs~~~g~~~v~~L~~~CtiRiSFvKGWG~~Y~Rq~ItstPCWiEI~L~~p 223 (245)
T 3gmj_D 155 PPGCSLKIFNNQEFAQLLSQSVNNGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGP 223 (245)
T ss_dssp CTTCEEEEECHHHHHHHHHHTTTTCSHHHHHHGGGGEEEEEESSCCSTTSSCCSGGGSSSEEEEEEHHH
T ss_pred CCCCeEEEeCHHHHHHHHHHHhhcCCchhhhhhhcceeeeEeecCcCcccccCCcccCCEEEEEEcChH
Confidence 9999999999998 88899999999999999765 99999999999999999999999999999865
No 2
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A
Probab=100.00 E-value=5.3e-70 Score=482.90 Aligned_cols=179 Identities=33% Similarity=0.577 Sum_probs=168.2
Q ss_pred eeccCCCCCCCCCceeEEEEEeeccccccceeeeCCeEEE--EeCCCCCCceeeccccCCCCCCCCCCCCCCCChhHHHH
Q psy11998 22 HLFFSPAGERRPGEWCKLAYWELSHRVGRLYPVVTPYIHV--FWAQPCGDGLCLETLATGNNSAPSGNGPHHVPDAVRRT 99 (245)
Q Consensus 22 ~~~~~~~~~~~~~~WC~iaY~El~~rVGe~f~~~~~~v~V--f~dp~~~~rfcLg~lsnv~~~~~~~~~~~~r~~~v~~t 99 (245)
.+..+|+++++|++||+|+|||+++||||+|+|++++|+| |+||++++|||||.|+|+ +|++++++|
T Consensus 20 ~~~~~~v~~~~~~~WcsIaYyE~n~rVGe~f~~~~~~v~IDGf~dps~~~rfcLg~lsN~-----------~R~~~v~~~ 88 (227)
T 1khx_A 20 SLDLQPVTYSEPAFWCSIAYYELNQRVGETFHASQPSLTVDGFTDPSNSERFCLGLLSNV-----------NRNATVEMT 88 (227)
T ss_dssp -----CCCCCCCSCSEEEEEEETTEECSCCEEECSSEEEEESSCCSSCTTEEEGGGCCCT-----------TCCHHHHHH
T ss_pred cCCCcccccCCCCceEEEEEEecCceeCCeEEecCCEEEEeCccCCCCCCeeecccccCC-----------CCcHHHHHH
Confidence 3478899999999999999999999999999999999999 999999999999999999 999999999
Q ss_pred HHhcccchhhccCCCCCCCccCcccCCCCCCCCCCCCCCeEEEEECCeEEEEecCCCceeecCCCCCCC-CCCCcceEEc
Q psy11998 100 RTKIGLVVESRRLNPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEADGVWAYNRSEAPVFVNSPGLDDP-GPPTLLVYRI 178 (245)
Q Consensus 100 R~~IG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~L~~~~~~Vw~~n~S~~pIFV~Sp~ln~~-~~~~~tV~KI 178 (245)
|+|||+ ||+|++++|+||++|+|++|||||||+||.+ +.++++|+||
T Consensus 89 R~~IG~--------------------------------GV~L~~~~G~V~~~nlS~~~IFVqS~~~n~~~~~~~~tV~Ki 136 (227)
T 1khx_A 89 RRHIGR--------------------------------GVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKI 136 (227)
T ss_dssp HTTTTT--------------------------------CEEEEEETTEEEEEECSSSCEEEECHHHHHHTTCCTTCCEEE
T ss_pred HHhhcC--------------------------------ceEEEEECCEEEEEEcCCCCEEEeCCCcccccCCCcCceEEe
Confidence 999999 9999999999999999999999999999986 5689999999
Q ss_pred CCCCEEEEeCCCC-chhhhhcCCCCCCccccCce---eEEeeeecCCCCCCCCCcccCCeEEEEEeccC
Q psy11998 179 PPGHCLNIFDPAL-PPRLRESFPAPPTGPVDPNS---IRISFAKGWGPKYSRQEITACPAWLEVLLVPA 243 (245)
Q Consensus 179 ppG~slKIFd~~~-~~~L~qs~~~~~~gvydL~~---IRISFVKGWG~eY~RQ~ITstPCWIEIhL~~~ 243 (245)
+||+++||||+++ +++|++++++++++++||++ ||||||||||++|+||+||+||||||||||.|
T Consensus 137 ~pg~~lKvFd~~~fa~~L~~~~~~~~~~v~~L~~~C~iRISFvKGWG~~Y~Rq~It~tPCWiEI~l~~p 205 (227)
T 1khx_A 137 PPGCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGP 205 (227)
T ss_dssp CTTCEEEEEEHHHHHHHHHHHGGGCHHHHHGGGGGGEEEEEESCCCSSSSSCCSGGGSSSEEEEEEHHH
T ss_pred CCCCeEEEeCHHHHHHHHHHHhccCCCchhhhhhceEEEEEEEcCCCCCCCCCCCCcCCeEEEEECCHH
Confidence 9999999999999 78899998889999999875 99999999999999999999999999999875
No 3
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A
Probab=100.00 E-value=1.1e-66 Score=470.94 Aligned_cols=191 Identities=31% Similarity=0.588 Sum_probs=157.2
Q ss_pred EEEEeeeccccceeeccCCCCCCCCCceeEEEEEeeccccccceee--eCCeEEE--EeCCCCCCceeeccccCCCCCCC
Q psy11998 9 LKFYYWVAHLSNVHLFFSPAGERRPGEWCKLAYWELSHRVGRLYPV--VTPYIHV--FWAQPCGDGLCLETLATGNNSAP 84 (245)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~WC~iaY~El~~rVGe~f~~--~~~~v~V--f~dp~~~~rfcLg~lsnv~~~~~ 84 (245)
+..-||..| +++.+.-....+.++++||+|+|||+++||||+|++ +.++|+| |+||++++|||||+|+|+
T Consensus 13 ~~~~~~~~~-~~~~~~~~~~~~~~~~~WCsIaYyEln~rVGe~f~~~~~~~~v~VDGf~dps~~~RfCLg~lsN~----- 86 (268)
T 1dd1_A 13 HPGHYWPVH-NELAFQPPISNHPAPEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNV----- 86 (268)
T ss_dssp ---------------CCCSCCSCCCSEEEEEEEEETTEECSCCEEEETTCSEEEEESCCCCCCTTEEECSSCCCT-----
T ss_pred CCCcccccc-cccccCCccccCCCCCceEEEEEEecCceecceEEecCCCCEEEEecCCCCCCCCeeecccccCC-----
Confidence 566799855 555555556788999999999999999999999999 7899999 999999999999999999
Q ss_pred CCCCCCCCChhHHHHHHhcccchhhccCCCCCCCccCcccCCCCCCCCCCCCCCeEEEEEC-CeEEEEecCCCceeecCC
Q psy11998 85 SGNGPHHVPDAVRRTRTKIGLVVESRRLNPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEA-DGVWAYNRSEAPVFVNSP 163 (245)
Q Consensus 85 ~~~~~~~r~~~v~~tR~~IG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~L~~~~-~~Vw~~n~S~~pIFV~Sp 163 (245)
+|++++++||+|||+ ||+|++++ |+||++|+|++|||||||
T Consensus 87 ------~R~~~ve~~R~~IG~--------------------------------GV~L~~~~~G~Vwl~nlS~~~IFVqS~ 128 (268)
T 1dd1_A 87 ------HRTEAIERARLHIGK--------------------------------GVQLECKGEGDVWVRCLSDHAVFVQSY 128 (268)
T ss_dssp ------TCCHHHHHHHTTTTT--------------------------------CEEEEEETTTEEEEEECSSSCEEEECH
T ss_pred ------CccHHHHHHHHhhcC--------------------------------ceEEEEecCCcEEEEecCCCCEEEcCC
Confidence 999999999999999 99999997 889999999999999999
Q ss_pred CCCCCCC-CC-cceEEcCCCCEEEEeCCCC-chhhhh--------cCC----------C-----CC-----------Ccc
Q psy11998 164 GLDDPGP-PT-LLVYRIPPGHCLNIFDPAL-PPRLRE--------SFP----------A-----PP-----------TGP 206 (245)
Q Consensus 164 ~ln~~~~-~~-~tV~KIppG~slKIFd~~~-~~~L~q--------s~~----------~-----~~-----------~gv 206 (245)
+||.+++ ++ ++||||+||+++||||+++ .++|++ +++ . ++ +++
T Consensus 129 ~ln~~~g~~p~~tV~KI~pg~~lKVFD~~~f~~~l~~~~~~~q~a~~~q~a~~~g~~~~~~~~~g~~p~~~~~~~a~~~v 208 (268)
T 1dd1_A 129 YLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGV 208 (268)
T ss_dssp HHHHHHTCCTTCCEEEECTTCEEEEECHHHHHHHHHHHHHHHTTTTCC--------------------------CCSCCH
T ss_pred CccccccCCCCCcEEEeCCCCeEEEeccHHHHHHHHHHHHhhhhhhhhhhhhhccccCCcccccccccccccccccccch
Confidence 9999854 54 6999999999999999988 344432 100 0 21 567
Q ss_pred ccCce---eEEeeeecCCCCCCCCCcccCCeEEEEEeccC
Q psy11998 207 VDPNS---IRISFAKGWGPKYSRQEITACPAWLEVLLVPA 243 (245)
Q Consensus 207 ydL~~---IRISFVKGWG~eY~RQ~ITstPCWIEIhL~~~ 243 (245)
+||++ ||||||||||++|+||+||+||||||||||.|
T Consensus 209 ~~L~~~C~iRISFVKGWG~~Y~Rq~ItstPCWIEI~L~~p 248 (268)
T 1dd1_A 209 DDLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRA 248 (268)
T ss_dssp HHHHGGGEEEEEESCCCSTTSSCCSGGGSSSEEEEEEHHH
T ss_pred hhhhhceeEEEEEEcCCCCCCCCCCCCcCCeEEEEEcCHH
Confidence 88755 99999999999999999999999999999975
No 4
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B*
Probab=100.00 E-value=4.2e-66 Score=459.54 Aligned_cols=169 Identities=34% Similarity=0.635 Sum_probs=150.3
Q ss_pred CCCceeEEEEEeeccccccceee--eCCeEEE--EeCCCCCCceeeccccCCCCCCCCCCCCCCCChhHHHHHHhcccch
Q psy11998 32 RPGEWCKLAYWELSHRVGRLYPV--VTPYIHV--FWAQPCGDGLCLETLATGNNSAPSGNGPHHVPDAVRRTRTKIGLVV 107 (245)
Q Consensus 32 ~~~~WC~iaY~El~~rVGe~f~~--~~~~v~V--f~dp~~~~rfcLg~lsnv~~~~~~~~~~~~r~~~v~~tR~~IG~~~ 107 (245)
+|++||+|+|||+++||||+|++ +.++|+| |+||++++|||||+|+|+ +|++++++||+|||+
T Consensus 1 ~p~~WcsIaYyEl~~rVGe~f~~~~~~~~v~IDG~~dps~~~rfcLg~lsN~-----------~R~~~~e~~R~~IG~-- 67 (234)
T 1ygs_A 1 APEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNV-----------HRTEAIERARLHIGK-- 67 (234)
T ss_dssp CCSEEEEEEEEETTEEEEEEEEEETTCSEEEEESSCCTTCSSEEECTTCCCT-----------TCCHHHHHHHTTTTT--
T ss_pred CCCcceEEEEEecCceecceEEecCCCCEEEEecCcCCCCCCeeecccccCC-----------CCcHHHHHHHHhhcC--
Confidence 47899999999999999999999 8899999 999999999999999999 999999999999999
Q ss_pred hhccCCCCCCCccCcccCCCCCCCCCCCCCCeEEEEEC-CeEEEEecCCCceeecCCCCCCCCC-CC-cceEEcCCCCEE
Q psy11998 108 ESRRLNPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEA-DGVWAYNRSEAPVFVNSPGLDDPGP-PT-LLVYRIPPGHCL 184 (245)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~L~~~~-~~Vw~~n~S~~pIFV~Sp~ln~~~~-~~-~tV~KIppG~sl 184 (245)
||+|++++ |+||++|+|++|||||||+||.+++ ++ ++||||+||+++
T Consensus 68 ------------------------------GV~L~~~~~G~Vw~~n~S~~~IFVqS~~ln~~~~~~p~~~V~Ki~pg~~l 117 (234)
T 1ygs_A 68 ------------------------------GVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYI 117 (234)
T ss_dssp ------------------------------CEEEEEETTTEEEEEECSSSCEEEECHHHHHTTTCCTTCCCEEECTTCEE
T ss_pred ------------------------------ceEEEEecCCcEEEEecCCCCEEEcCCCccccccCCCCCcEEEeCCCCeE
Confidence 99999997 7899999999999999999999865 54 699999999999
Q ss_pred EEeCCCC-chhhhhc--------CC----------C-----CC-----------CccccCce---eEEeeeecCCCCCCC
Q psy11998 185 NIFDPAL-PPRLRES--------FP----------A-----PP-----------TGPVDPNS---IRISFAKGWGPKYSR 226 (245)
Q Consensus 185 KIFd~~~-~~~L~qs--------~~----------~-----~~-----------~gvydL~~---IRISFVKGWG~eY~R 226 (245)
||||+++ +++|++. ++ . ++ +++|||++ ||||||||||++|+|
T Consensus 118 KvFd~~~f~~~l~~~~~~~q~~~~~~~a~~~g~~~~~~~~~g~~p~~~~~~~a~~~v~~L~~~c~iRISFvKGWG~~Y~R 197 (234)
T 1ygs_A 118 KVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVDDLRRLCILRMSFVKGWGPDYPR 197 (234)
T ss_dssp EEECHHHHHHHHHHHHHHHTC-----------------------------------CHHHHHTTEEEEESSCCCSTTSSC
T ss_pred EEeCcHHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccCcccccccccccccchhhhhhceEEEEEEEcCCCCCCCC
Confidence 9999998 5555431 10 0 22 36788665 999999999999999
Q ss_pred CCcccCCeEEEEEeccC
Q psy11998 227 QEITACPAWLEVLLVPA 243 (245)
Q Consensus 227 Q~ITstPCWIEIhL~~~ 243 (245)
|+||+||||||||||.|
T Consensus 198 q~It~tPCWiEI~l~~~ 214 (234)
T 1ygs_A 198 QSIKETPCWIEIHLHRA 214 (234)
T ss_dssp SSGGGSSSEEEEEEHHH
T ss_pred CCCCCCCeEEEEEcCHH
Confidence 99999999999999975
No 5
>3a77_A IRF-3, interferon regulatory factor 3; phosphorylated protein, activator, antiviral defense, DNA-BI HOST-virus interaction, nucleus, phosphoprotein; HET: SEP; 1.80A {Homo sapiens} PDB: 1j2f_A 1qwt_A 1zoq_A
Probab=95.96 E-value=0.033 Score=49.48 Aligned_cols=149 Identities=13% Similarity=0.038 Sum_probs=86.0
Q ss_pred CceeEEEEEeeccccccceeeeCCe-EEE-EeCCCCCCceeeccccCCCCCCCCCCCCCCC-ChhHHHHHHhcccchhhc
Q psy11998 34 GEWCKLAYWELSHRVGRLYPVVTPY-IHV-FWAQPCGDGLCLETLATGNNSAPSGNGPHHV-PDAVRRTRTKIGLVVESR 110 (245)
Q Consensus 34 ~~WC~iaY~El~~rVGe~f~~~~~~-v~V-f~dp~~~~rfcLg~lsnv~~~~~~~~~~~~r-~~~v~~tR~~IG~~~~~~ 110 (245)
...-.|..|=.+..|++. .+++|. +-+ +.++..+ ...+..+.-+ .|.+..+..+ ...++++-.++++
T Consensus 16 ~~~l~Vtv~YrG~~V~~~-~v~~p~GcRl~~~~~~~~-~~~~e~V~lP---~p~~~l~~~~q~~~t~~LL~~l~r----- 85 (242)
T 3a77_A 16 EWEFEVTAFYRGRQVFQQ-TISCPEGLRLVGSEVGDR-TLPGWPVTLP---DPGMSLTDRGVMSYVRHVLSCLGG----- 85 (242)
T ss_dssp CBEEEEEEEETTEEEEEE-EEECTTCEEEC--------CCSSEEECCC---CGGGTCCCHHHHHHHHHHHHHCTT-----
T ss_pred ccEEEEEEEECCEEEEEE-EEcCCCeEEEecCCCCCC-CCCCceeECC---CCccccccHHHHHHHHHHHHhcCC-----
Confidence 344556555567788875 466664 666 3322211 1222222211 1111011111 2456777789999
Q ss_pred cCCCCCCCccCcccCCCCCCCCCCCCCCeEEEEECCeEEEEecCCCceeecCCCCCCCCCCCcceEEcCCCCEEEEeCCC
Q psy11998 111 RLNPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEADGVWAYNRSEAPVFVNSPGLDDPGPPTLLVYRIPPGHCLNIFDPA 190 (245)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~L~~~~~~Vw~~n~S~~pIFV~Sp~ln~~~~~~~tV~KIppG~slKIFd~~ 190 (245)
|+.|...++++|+..+....||.....-..+......-.|++-+...||||++
T Consensus 86 ---------------------------GllL~~~~~giya~Rlcq~rVfW~~~~~~~p~~~~~~P~kLeR~~~~klFd~~ 138 (242)
T 3a77_A 86 ---------------------------GLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLG 138 (242)
T ss_dssp ---------------------------CEEEEEETTEEEEEECSSSCEEEEEECSSCCCCTTCCSEECCSSSCEEEEEHH
T ss_pred ---------------------------eEEEEEcCCcEEEEEcCCccEEEecCCCCCCCCCCCCCcccCCCCceeecCHH
Confidence 99999999999999999999999862211111111224799999999999999
Q ss_pred C-chhhhhcCCCCCCccccC-ceeEEeeeecCCC
Q psy11998 191 L-PPRLRESFPAPPTGPVDP-NSIRISFAKGWGP 222 (245)
Q Consensus 191 ~-~~~L~qs~~~~~~gvydL-~~IRISFVKGWG~ 222 (245)
+ ...|.+-.+.+. . .+ ..|.+.|+.=|-.
T Consensus 139 ~Fl~eL~~f~~g~~--~-~P~~~I~LcFGEe~Pd 169 (242)
T 3a77_A 139 PFIVDLITFTEGSG--R-SPRYALWFCVGESWPQ 169 (242)
T ss_dssp HHHHHHHHHHTTSS--C-CCCCEEEEEECCSSTT
T ss_pred HHHHHHHHHHcCCC--C-CCCcEEEEEeCCcCCC
Confidence 9 566654332211 1 12 2388888876654
No 6
>3dsh_A IRF-5, interferon regulatory factor 5; phosphoactivation induced dimerization, DNA-binding, nucleus transcription, transcription regulation; 2.00A {Homo sapiens}
Probab=94.81 E-value=0.075 Score=47.31 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=55.5
Q ss_pred CeEEEEECCeEEEEecCCCceeecCCCCCCCCCCCcceEEcCCCCEEEEeCCCC-chhhhhcCCCCC-CccccCceeEEe
Q psy11998 138 GLTLSLEADGVWAYNRSEAPVFVNSPGLDDPGPPTLLVYRIPPGHCLNIFDPAL-PPRLRESFPAPP-TGPVDPNSIRIS 215 (245)
Q Consensus 138 Gi~L~~~~~~Vw~~n~S~~pIFV~Sp~ln~~~~~~~tV~KIppG~slKIFd~~~-~~~L~qs~~~~~-~gvydL~~IRIS 215 (245)
||.|...++++|+..+....||...|....... ...|++-+...||||.+. ...|++-..... ..+ -..|.+.
T Consensus 93 GllL~~~~~glyakRlcq~rVfW~gp~~~~~~~---~P~kLeR~~~~kLFd~~~F~~eL~~f~~g~~~~~P--~y~I~Lc 167 (246)
T 3dsh_A 93 GLILQLQGQDLYAIRLCQCKVFWSGPCASAHDS---CPNPIQREVKTKLFSLEHFLNELILFQKGQTNTPP--PFEIFFC 167 (246)
T ss_dssp CEEEEEETTEEEEEECSSSCEEEESTTSCCSCS---SCCBCCBTCCEEEEEHHHHHHHHHHHHTTSCSSCC--CCCEEEE
T ss_pred ceEEEEcCCeEEEEecCCCCeEeeCCCCCCCCC---CccccccCCceeecCHHHHHHHHHHHhcCCCCCCC--CcEEEEE
Confidence 999999999999999999999997654322111 256888888899999988 566654322111 111 1238888
Q ss_pred eeecCC
Q psy11998 216 FAKGWG 221 (245)
Q Consensus 216 FVKGWG 221 (245)
|+.=|-
T Consensus 168 FGEe~p 173 (246)
T 3dsh_A 168 FGEEWP 173 (246)
T ss_dssp ESSCSS
T ss_pred ECCcCC
Confidence 888773
No 7
>3r2v_A PB2 C-terminal subunit; structural genomics, seattle structural genomics center for infectious disease, ssgcid, polymerase BASI H3N2, H1N1; 1.30A {Influenza a virus} PDB: 2vy6_A 3cw4_A 3l56_A 3kc6_A 3khw_A 2gmo_A 2jdq_D
Probab=30.59 E-value=37 Score=29.21 Aligned_cols=42 Identities=19% Similarity=0.356 Sum_probs=32.4
Q ss_pred hhhccCCCCCCCccCcccCCCCCCCCCCCCCCeEEEEECCeEEEEecCCCceeecCC
Q psy11998 107 VESRRLNPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEADGVWAYNRSEAPVFVNSP 163 (245)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~L~~~~~~Vw~~n~S~~pIFV~Sp 163 (245)
-.++++||+ ++.++++ -+++...++|.-+-.+.++|||--.+
T Consensus 82 lPFaaaPP~-qsrmqfs--------------sltv~vrGsG~rilvRgnSPvFnYNk 123 (216)
T 3r2v_A 82 LPFAAAPPK-QSRMQFS--------------SLTVNVRGSGMRILVRGNSPVFNYNK 123 (216)
T ss_dssp GGGGGSCCC-CCSCCCS--------------EEEEEETTEEEEEESSSCCSSEEECT
T ss_pred cccccCCch-hcccccc--------------eEEEEEecCceEEEEeCCCcccccCc
Confidence 346777776 7788887 77888888888777899999996544
No 8
>4dag_A Fusion glycoprotein F0; viral protein, MPV fusion protein, immune system, antibody structure, FAB structure, vaccine; HET: NAG BMA MAN; 3.39A {Human metapneumovirus}
Probab=15.89 E-value=41 Score=31.97 Aligned_cols=12 Identities=17% Similarity=0.567 Sum_probs=9.5
Q ss_pred CcccCCeEEEEE
Q psy11998 228 EITACPAWLEVL 239 (245)
Q Consensus 228 ~ITstPCWIEIh 239 (245)
-|.+||||++-.
T Consensus 260 GVidTpcW~~~~ 271 (415)
T 4dag_A 260 GVIDTPCWIIKA 271 (415)
T ss_dssp EECSCEEEEEEE
T ss_pred eeecCcceEEec
Confidence 478999998753
No 9
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=13.79 E-value=3.5e+02 Score=19.95 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=27.7
Q ss_pred CCCCCCCeEEEEECCeEEEEec-CCCceeecCCCC
Q psy11998 132 PGRDRQGLTLSLEADGVWAYNR-SEAPVFVNSPGL 165 (245)
Q Consensus 132 ~~~~~~Gi~L~~~~~~Vw~~n~-S~~pIFV~Sp~l 165 (245)
+..+++=.+|.++++.+++..+ |....||+..-+
T Consensus 48 ~~vSr~Ha~i~~~~~~~~l~Dl~S~nGt~vng~~i 82 (115)
T 2xt9_B 48 VTVSRRHAEFRLEGGEFQVVDVGSLNGTYVNREPV 82 (115)
T ss_dssp TTSCSSCEEEEEETTEEEEEECSCSSCEEETTEEC
T ss_pred cccChhheEEEEECCEEEEEECCCCCCeEECCEEc
Confidence 4566777899999999999988 899999975443
No 10
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}
Probab=13.52 E-value=67 Score=26.56 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=23.0
Q ss_pred CCCCCeEEEEECCeEEEEecCC----Cceeec
Q psy11998 134 RDRQGLTLSLEADGVWAYNRSE----APVFVN 161 (245)
Q Consensus 134 ~~~~Gi~L~~~~~~Vw~~n~S~----~pIFV~ 161 (245)
..|.||.|.+++|.|--||.++ ..||-=
T Consensus 133 ~~rVGVfLDye~G~lSFY~v~~~~~~s~I~tF 164 (193)
T 3kb5_A 133 PTRIGLYLSFGDGVLSFYDASDADALVPLFAF 164 (193)
T ss_dssp CSEEEEEEETTTTEEEEEECCSTTCCEEEEEE
T ss_pred CCEEEEEEEcCCCEEEEEeCCCCCCceEEEEe
Confidence 4577999999999999999987 566643
Done!