RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11998
(245 letters)
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 190
Score = 163 bits (414), Expect = 3e-51
Identities = 59/219 (26%), Positives = 86/219 (39%), Gaps = 52/219 (23%)
Query: 33 PGEWCKLAYWELSHRVGRLYPVVTPYIHV--FWAQPCGDGLCLETLATGNNSAPSGNGPH 90
P WC ++Y+EL+ RVG + P + V F + CL L+ N +
Sbjct: 1 PAFWCSISYYELNQRVGETFHASQPSMTVDGFTDPSNSERFCLGLLSNVNRN-------- 52
Query: 91 HVPDAVRRTRTKIGLVVESRRLNPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEADGVWA 150
AV TR IG +G+ L V+A
Sbjct: 53 ---AAVELTRRHIG--------------------------------RGVRLYYIGGEVFA 77
Query: 151 YNRSEAPVFVNSPGLDDP-GPPTLLVYRIPPGHCLNIFDPA-----LPPRLRESFPAPPT 204
S++ +FV SP + G V +IPPG L IF+ L + + F A
Sbjct: 78 ECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAV-Y 136
Query: 205 GPVDPNSIRISFAKGWGPKYSRQEITACPAWLEVLLVPA 243
+IR+SF KGWG +Y RQ +T+ P W+E+ L
Sbjct: 137 QLTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGP 175
>d1ygsa_ b.26.1.1 (A:) Smad4 tumor suppressor C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 225
Score = 147 bits (371), Expect = 2e-44
Identities = 59/256 (23%), Positives = 85/256 (33%), Gaps = 88/256 (34%)
Query: 33 PGEWCKLAYWELSHRVGRLYPVVTPYIHV----FWAQPCGDGLCLETLATGNNSAPSGNG 88
P WC +AY+E+ +VG + V + V + GD CL L+
Sbjct: 2 PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSN---------- 51
Query: 89 PHHVPDAVRRTRTKIGLVVESRRLNPSFGAVCPYTKASGCGYVPGRDRQGLTLSLEADG- 147
H +A+ R R IG +G+ L + +G
Sbjct: 52 -VHRTEAIERARLHIG--------------------------------KGVQLECKGEGD 78
Query: 148 VWAYNRSEAPVFVNSPGLDDPGP--PTLLVYRIPPGHCLNIFDPA-----LPPRLRESFP 200
VW S+ VFV S LD P V++I P + +FD + + +
Sbjct: 79 VWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQA 138
Query: 201 AP----------PTGPVDPNS-----------------------IRISFAKGWGPKYSRQ 227
A GP +R+SF KGWGP Y RQ
Sbjct: 139 AAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVDDLRRLCILRMSFVKGWGPDYPRQ 198
Query: 228 EITACPAWLEVLLVPA 243
I P W+E+ L A
Sbjct: 199 SIKETPCWIEIHLHRA 214
>d4pgaa_ c.88.1.1 (A:) Glutaminase-asparaginase {Pseudomonas sp., 7A
[TaxId: 306]}
Length = 330
Score = 31.7 bits (71), Expect = 0.062
Identities = 18/118 (15%), Positives = 28/118 (23%), Gaps = 8/118 (6%)
Query: 20 NVHLFFSPAGERRPGEWCKLAYWELSHRVG--RLYPVVTPYIHVFWAQPCGDGLCLETLA 77
+ F PA + +V Y VT + AQ L
Sbjct: 189 KSYWFRLPAKRHTVNSEFDIKQISSLPQVDIAYSYGNVTDTAYKALAQNGAKALIHAGTG 248
Query: 78 TGNNSAPSGNGPHHVPDAVRRTRTKIGLVVESRRLNPSFGAVCPYTKASGCGYVPGRD 135
G+ S VP + + ++ S F +V D
Sbjct: 249 NGSVS------SRVVPALQQLRKNGTQIIRSSHVNQGGFVLRNAEQPDDKNDWVVAHD 300
>d1qwta_ b.26.1.3 (A:) Interferon regulatory factor 3 (IRF3),
transactivation domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 239
Score = 28.7 bits (64), Expect = 0.62
Identities = 13/87 (14%), Positives = 23/87 (26%), Gaps = 5/87 (5%)
Query: 136 RQGLTLSLEADGVWAYNRSEAPVFVNSPGLDDPGPPTLLVYRIPPGHCLNIFDPALPPRL 195
GL L +WA + P +P +FD L P +
Sbjct: 81 GGGLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFD--LGPFI 138
Query: 196 RE--SFPAPPTGPVDPNSIRISFAKGW 220
+ +F ++ + W
Sbjct: 139 VDLITFTEGSGRSPRY-ALWFCVGESW 164
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 163
Score = 27.4 bits (60), Expect = 1.0
Identities = 12/111 (10%), Positives = 33/111 (29%), Gaps = 5/111 (4%)
Query: 132 PGRDRQGLTLSLEADGVWAYNRSEAPVFVNSPGLDDPGPPTLLVYRIPPGHCLNIFDPAL 191
G D GL L D + + + + + P P V I ++ F+
Sbjct: 16 VGFDVFGLCLKEPYDVIEVEAIDDKEIIIEVDDKNIPTDPDKNVAGIVAKKMIDDFNIGK 75
Query: 192 PPRLRESFPAPPTGPVDPNSIRIS-----FAKGWGPKYSRQEITACPAWLE 237
++ + ++ + + + + ++ ++ E
Sbjct: 76 GVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGE 126
>d1zq1a2 c.88.1.1 (A:76-438) Glutamyl-tRNA(Gln) amidotransferase
subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}
Length = 363
Score = 27.8 bits (61), Expect = 1.4
Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 19/123 (15%)
Query: 21 VHLFFSPAGERRPGEWCKLAYWELSHRVG--RLYPVVTPYIHVFWAQPCGDGLCLETLAT 78
F +R E ++ ++ +V ++YP ++ I F G+ +E
Sbjct: 206 EIEFLRKDYRKRSDEEVEV-DDKIEEKVALVKVYPGISSEIIDFLVDKGYKGIVIEGT-- 262
Query: 79 GNNSAPSGNGPHHVPDAVRRTRTK-IGLVVESRRLNPSFGAVCPYTKASG-----CGYVP 132
G+ P+ + ++ R + + + + S+ + G V ++G G +P
Sbjct: 263 -----GLGHTPNDIIPSIERAVEEGVAVCMTSQCIY---GRVNLNVYSTGRKLLKAGVIP 314
Query: 133 GRD 135
D
Sbjct: 315 CED 317
>d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 628
Score = 27.2 bits (60), Expect = 2.1
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 20 NVHLFFSPAGERRPGEWCKLAYWELSHRV 48
S G R+ EW +LA W +++ +
Sbjct: 298 MAEYRISIYG-RKMSEWDQLASWIVNNDL 325
>d1ix2a_ b.1.18.17 (A:) Copper resistance protein C (CopC, PcoC)
{Escherichia coli [TaxId: 562]}
Length = 102
Score = 25.1 bits (54), Expect = 4.2
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 193 PRLRESFPAPPTGPVDPNSIRISFAKGWGPKYSRQEIT 230
P L+ S P + P I+++F++ K+S ++T
Sbjct: 1 PELKSSVPQADSAVAAPEKIQLNFSENLTVKFSGAKLT 38
>d2f4la1 b.23.3.1 (A:1-283) Putative acetamidase TM0119 {Thermotoga
maritima [TaxId: 2336]}
Length = 283
Score = 25.3 bits (55), Expect = 8.3
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 175 VYRIPPGHCLNIFDPALPPRLR 196
+ +P C+ F + P
Sbjct: 1 MKVVPAQRCVYSFSANMAPVEE 22
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.141 0.480
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,034,441
Number of extensions: 50017
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 13
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)