BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12000
(507 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 10/130 (7%)
Query: 8 TDAW--LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEK 65
+AW LG ++ G Y +A+ Y+ L + +N+ + Y+ G Y +A + +K
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 66 ---VPPSRAKTRLSF-HLSHKLGDEKSLMEYHQK-LE---DSLEEQLCLASIHFLRCHYQ 117
+ P A+ + + +K GD +EY+QK LE S E L + ++ + Y
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 118 EAIDIYKRIL 127
EAI+ Y++ L
Sbjct: 121 EAIEYYQKAL 130
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 8 TDAW--LGYCHFHLGQYKQALGIYETLRHL-PNPPEDTEFNIASCYFYLGMYLQANQILE 64
+AW LG ++ G Y +A+ Y+ L PN E +N+ + Y+ G Y +A + +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE-AWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 65 KV---PPSRAKTRLSF-HLSHKLGDEKSLMEYHQK 95
K P+ A+ + + +K GD +EY+QK
Sbjct: 68 KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 8 TDAW--LGYCHFHLGQYKQALGIYE-TLRHLPNPPEDTEFNIASCYFYLGMYLQANQILE 64
+AW LG ++ G Y +A+ Y+ L PN E +N+ + Y+ G Y +A + +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE-AWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 65 K---VPPSRAKTRLSF-HLSHKLGDEKSLMEYHQK 95
K + P+ A+ + + +K GD +EY+QK
Sbjct: 68 KALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 8 TDAW--LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEK 65
+AW LG ++ G Y++A+ Y+ L +N+ + Y+ G Y +A + +K
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 66 V---PPSRAKTRL-SFHLSHKLGD-EKSLMEYHQKLE 97
P+ AK + +K GD +K++ +Y + LE
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALE 105
>pdb|3U4T|A Chain A, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b.
pdb|3U4T|B Chain B, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b
Length = 272
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 107 ASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYG--AMCYYKLDYYDVSQEQVAMYLAQ 163
A F +Y EAI+++ + L+ K + +Y A+CYY+L YD++Q+ + Y ++
Sbjct: 10 ADFLFKNNNYAEAIEVFNK--LEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK 66
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 400 ASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYG--AMCYYKLDYYDVSQEQVAMYLAQ 456
A F +Y EAI+++ + L+ K + +Y A+CYY+L YD++Q+ + Y ++
Sbjct: 10 ADFLFKNNNYAEAIEVFNK--LEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK 66
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 22 YKQALGIYETLRHLPNPPE--DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHL 79
Y++AL IY T R P+ P T+ N+ASCY G Y A + +++ +RA + +
Sbjct: 150 YRRALEIYAT-RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI-LTRAHEKEFGSV 207
Query: 80 SHKLGDEKSLMEYHQKLEDSLEEQ 103
+ GD K + + ++ E+S +++
Sbjct: 208 N---GDNKPIWMHAEEREESKDKR 228
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 22 YKQALGIYETLRHLPNPPE--DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHL 79
Y++AL IY T R P+ P T+ N+ASCY G Y A + +++ +RA + +
Sbjct: 150 YRRALEIYAT-RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI-LTRAHEKEFGSV 207
Query: 80 SHKLGDEKSLMEYHQKLEDSLEEQ 103
+ GD K + + ++ E+S +++
Sbjct: 208 N---GDNKPIWMHAEEREESKDKR 228
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 22 YKQALGIYETLRHLPNPPE--DTEFNIASCYFYLGMYLQANQILEKV 66
Y++AL IY+T + P+ P T+ N+ASCY G + QA + +++
Sbjct: 176 YQRALEIYQT-KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221
>pdb|2PMT|A Chain A, Glutathione Transferase From Proteus Mirabilis
pdb|2PMT|B Chain B, Glutathione Transferase From Proteus Mirabilis
pdb|2PMT|C Chain C, Glutathione Transferase From Proteus Mirabilis
pdb|2PMT|D Chain D, Glutathione Transferase From Proteus Mirabilis
pdb|1PMT|A Chain A, Glutathione Transferase From Proteus Mirabilis
Length = 203
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 118 EAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAM--YLAQ-KPTSRIALNLK 174
E ID+ + KD LA+N G + +LD D+ E VA+ YLA KP + K
Sbjct: 28 ERIDLRTKKTESGKDFLAINPKGQVPVLQLDNGDILTEGVAIVQYLADLKPDRNLIAPPK 87
Query: 175 ACNTY 179
A Y
Sbjct: 88 ALERY 92
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 411 EAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAM--YLAQ-KPTSRIALNLK 467
E ID+ + KD LA+N G + +LD D+ E VA+ YLA KP + K
Sbjct: 28 ERIDLRTKKTESGKDFLAINPKGQVPVLQLDNGDILTEGVAIVQYLADLKPDRNLIAPPK 87
Query: 468 ACNTY 472
A Y
Sbjct: 88 ALERY 92
>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
Lactobacillus Acidophilus Ncfm
Length = 549
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
Query: 76 SFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHF-LRCHYQEAIDIYKRILLDHKDLL 134
++ + L D S+ +QKL E + F L + Q+A+ Y RIL D K L+
Sbjct: 435 DINVENALADPNSIFYTYQKLIKLRHENPIVVDGDFSLVSNTQDAVLAYYRILNDKKWLV 494
Query: 135 ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAE 188
N+ + VS +Q+ L+ P N+ Y+ F S+ E
Sbjct: 495 VANLSNEEQNF------VSNDQIETILSNYPERNNVQNI-TLKPYEAFISKVIE 541
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
Query: 369 SFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHF-LRCHYQEAIDIYKRILLDHKDLL 427
++ + L D S+ +QKL E + F L + Q+A+ Y RIL D K L+
Sbjct: 435 DINVENALADPNSIFYTYQKLIKLRHENPIVVDGDFSLVSNTQDAVLAYYRILNDKKWLV 494
Query: 428 ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAE 481
N+ + VS +Q+ L+ P N+ Y+ F S+ E
Sbjct: 495 VANLSNEEQNF------VSNDQIETILSNYPERNNVQNI-TLKPYEAFISKVIE 541
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,416,800
Number of Sequences: 62578
Number of extensions: 563968
Number of successful extensions: 1340
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1321
Number of HSP's gapped (non-prelim): 32
length of query: 507
length of database: 14,973,337
effective HSP length: 103
effective length of query: 404
effective length of database: 8,527,803
effective search space: 3445232412
effective search space used: 3445232412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)