BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12000
(507 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4III8|TTC26_XENTR Tetratricopeptide repeat protein 26 OS=Xenopus tropicalis GN=ttc26
PE=2 SV=1
Length = 554
Score = 469 bits (1208), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/414 (55%), Positives = 299/414 (72%), Gaps = 30/414 (7%)
Query: 1 MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQAN 60
+G ++ T+ W+GYC FHLG YK++L +++ L D N+A F+LGMY +A+
Sbjct: 52 VGESEEDTELWIGYCSFHLGDYKRSLEVFKALSQQEGCNPDVWVNLACTSFFLGMYKEAD 111
Query: 61 QILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120
+ K P SR + RL FHL+HK DEK LM +HQ L+D +E+QL LASIH++R HYQEAI
Sbjct: 112 EAANKAPKSRLQNRLLFHLAHKFNDEKRLMVFHQNLQDVIEDQLSLASIHYMRSHYQEAI 171
Query: 121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
DIYKRILL+++D LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IALNLKACN ++
Sbjct: 172 DIYKRILLENRDFLALNVYVALCYYKLDYYDVSQEVLAVYLQQVPDSTIALNLKACNHFR 231
Query: 181 LFTSRAAENQLKPILVS---------------------------ILPPLIDVIPESRLNL 213
L+ +AAE +LK ++ S +LPPL+DVIPE+RLNL
Sbjct: 232 LYNGKAAEAELKGLMDSTSSPIEFAKELIKHNLVVFRAGEGALQVLPPLVDVIPEARLNL 291
Query: 214 VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGS 273
VIY+L+Q++ QEAF+LIK+LEPS PQEYILK VV ++GQ+ GSR+ +K AQ FQLVG
Sbjct: 292 VIYYLRQDDVQEAFNLIKDLEPSTPQEYILKGVVNASLGQELGSRDHLKIAQQFFQLVGG 351
Query: 274 SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKE 333
S SECDT+PGRQCMAS FFLLR F DV++YL+SIKSY+ +DD+FNFN+AQAK A+G YKE
Sbjct: 352 SASECDTIPGRQCMASCFFLLRQFDDVLIYLNSIKSYFYNDDTFNFNYAQAKAAVGNYKE 411
Query: 334 AEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
AEE+FLL+QNE +KNDY Y+S L +C K R+++ L K+ G+ SL++
Sbjct: 412 AEEVFLLIQNEKIKNDYTYLSWLARCYIMNKKPRMAWELYLKMETSGESFSLLQ 465
Score = 184 bits (467), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 133/220 (60%), Gaps = 18/220 (8%)
Query: 295 RSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMF-LLVQNEGLKNDYVYI 353
R F I L + S++ LG YK + E+F L Q EG D V++
Sbjct: 37 RDFTGAITLLEFKRQVGESEEDTELWIGYCSFHLGDYKRSLEVFKALSQQEGCNPD-VWV 95
Query: 354 S----------------HLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQL 397
+ K SR + RL FHL+HK DEK LM +HQ L+D +E+QL
Sbjct: 96 NLACTSFFLGMYKEADEAANKAPKSRLQNRLLFHLAHKFNDEKRLMVFHQNLQDVIEDQL 155
Query: 398 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 457
LASIH++R HYQEAIDIYKRILL+++D LALNVY A+CYYKLDYYDVSQE +A+YL Q
Sbjct: 156 SLASIHYMRSHYQEAIDIYKRILLENRDFLALNVYVALCYYKLDYYDVSQEVLAVYLQQV 215
Query: 458 PTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRVRF 497
P S IALNLKACN ++L+ +AAE +LK ++ S + F
Sbjct: 216 PDSTIALNLKACNHFRLYNGKAAEAELKGLMDSTSSPIEF 255
>sp|Q8BS45|TTC26_MOUSE Tetratricopeptide repeat protein 26 OS=Mus musculus GN=Ttc26 PE=2
SV=1
Length = 554
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/414 (54%), Positives = 289/414 (69%), Gaps = 30/414 (7%)
Query: 1 MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQAN 60
+G + T+ W+GYC FHLG YK+AL YE N + N+A YF+LGMY QA
Sbjct: 52 VGEQEDDTNLWIGYCAFHLGDYKRALEEYENATKEENCNPEVWVNLACTYFFLGMYKQAE 111
Query: 61 QILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120
K P SR + RL FHL+HK DEK LM +HQ L+D E+QL LASIH++R HYQEAI
Sbjct: 112 AAGFKAPKSRLQNRLLFHLAHKFNDEKKLMNFHQNLQDIKEDQLSLASIHYMRSHYQEAI 171
Query: 121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
DIYKRILLD+++ LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IALNLKACN ++
Sbjct: 172 DIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFR 231
Query: 181 LFTSRAAENQLKPIL---------------------------VSILPPLIDVIPESRLNL 213
L+ +AAE +LK ++ + +LPPL+DVIPE+RLNL
Sbjct: 232 LYNGKAAEAELKSLMDNASSPFEFAKELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNL 291
Query: 214 VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGS 273
VIY+L+Q++ QEA++LIK+LEP+ PQEYILK VV +GQ+ GSR+ +K AQ FQLVG
Sbjct: 292 VIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGG 351
Query: 274 SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKE 333
S SECDT+PGRQCMAS FFLL+ F DV++YL+S KSY+ +DD FNFN+AQAK A G E
Sbjct: 352 SASECDTIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSE 411
Query: 334 AEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
EE+FLL+Q+E LKNDY+Y+S L +C K RL++ L K+ G+ SL++
Sbjct: 412 GEEVFLLIQSEKLKNDYIYLSWLARCYIMNKKPRLAWELYLKMETSGESFSLLQ 465
Score = 178 bits (452), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 128/219 (58%), Gaps = 16/219 (7%)
Query: 295 RSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYIS 354
R F I L + +D N LG YK A E + E N V+++
Sbjct: 37 RDFTGAITLLEFKRHVGEQEDDTNLWIGYCAFHLGDYKRALEEYENATKEENCNPEVWVN 96
Query: 355 HLT----------------KCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLC 398
K SR + RL FHL+HK DEK LM +HQ L+D E+QL
Sbjct: 97 LACTYFFLGMYKQAEAAGFKAPKSRLQNRLLFHLAHKFNDEKKLMNFHQNLQDIKEDQLS 156
Query: 399 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP 458
LASIH++R HYQEAIDIYKRILLD+++ LALNVY A+CYYKLDYYDVSQE +A+YL Q P
Sbjct: 157 LASIHYMRSHYQEAIDIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIP 216
Query: 459 TSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRVRF 497
S IALNLKACN ++L+ +AAE +LK ++ +A F
Sbjct: 217 DSTIALNLKACNHFRLYNGKAAEAELKSLMDNASSPFEF 255
>sp|Q5U2N8|TTC26_RAT Tetratricopeptide repeat protein 26 OS=Rattus norvegicus GN=Ttc26
PE=2 SV=1
Length = 554
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/414 (54%), Positives = 289/414 (69%), Gaps = 30/414 (7%)
Query: 1 MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQAN 60
+G + T+ W+GYC FHLG YK+AL YE N + N+A YF+LGMY QA
Sbjct: 52 VGEQEEDTNLWIGYCAFHLGDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMYKQAE 111
Query: 61 QILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120
K P SR + RL FHL+HK DEK LM +HQ L+D E+QL LASIH++R HYQEAI
Sbjct: 112 AAGFKAPKSRLQNRLLFHLAHKFNDEKKLMNFHQNLQDIKEDQLSLASIHYMRSHYQEAI 171
Query: 121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
DIYKRILLD+++ LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IALNLKACN ++
Sbjct: 172 DIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFR 231
Query: 181 LFTSRAAENQLKPIL---------------------------VSILPPLIDVIPESRLNL 213
L+ +AAE +LK ++ + +LPPL+DVIPE+RLNL
Sbjct: 232 LYNGKAAEAELKSLMDNASSPFEFAKELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNL 291
Query: 214 VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGS 273
VIY+L+Q++ QEA++LIK+LEP+ PQEYILK VV +GQ+ GSR+ +K AQ FQLVG
Sbjct: 292 VIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGG 351
Query: 274 SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKE 333
S SECDT+PGRQCMAS FFLL+ F DV++YL+S KSY+ +DD FNFN+AQAK A G E
Sbjct: 352 SASECDTIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSE 411
Query: 334 AEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
EE+FLL+Q+E LKNDY+Y+S L +C K RL++ L K+ G+ SL++
Sbjct: 412 GEEVFLLIQSEKLKNDYIYLSWLARCYIMNKKPRLAWELYLKMETSGESFSLLQ 465
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/140 (61%), Positives = 107/140 (76%)
Query: 358 KCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYK 417
K SR + RL FHL+HK DEK LM +HQ L+D E+QL LASIH++R HYQEAIDIYK
Sbjct: 116 KAPKSRLQNRLLFHLAHKFNDEKKLMNFHQNLQDIKEDQLSLASIHYMRSHYQEAIDIYK 175
Query: 418 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTS 477
RILLD+++ LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IALNLKACN ++L+
Sbjct: 176 RILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFRLYNG 235
Query: 478 RAAENQLKPILVSAGPRVRF 497
+AAE +LK ++ +A F
Sbjct: 236 KAAEAELKSLMDNASSPFEF 255
>sp|A0AVF1|TTC26_HUMAN Tetratricopeptide repeat protein 26 OS=Homo sapiens GN=TTC26 PE=2
SV=1
Length = 554
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/414 (54%), Positives = 287/414 (69%), Gaps = 30/414 (7%)
Query: 1 MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQAN 60
+G + T+ W+GYC FHLG YK+AL YE N + N+A YF+LGMY QA
Sbjct: 52 VGEEEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAE 111
Query: 61 QILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120
K SR + RL FHL+HK DEK LM +HQ L+D E+QL LASIH++R HYQEAI
Sbjct: 112 AAGFKASKSRLQNRLLFHLAHKFNDEKKLMSFHQNLQDVTEDQLSLASIHYMRSHYQEAI 171
Query: 121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
DIYKRILLD+++ LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IALNLKACN ++
Sbjct: 172 DIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFR 231
Query: 181 LFTSRAAENQLKPIL---------------------------VSILPPLIDVIPESRLNL 213
L+ RAAE +LK ++ + +LPPL+DVIPE+RLNL
Sbjct: 232 LYNGRAAEAELKSLMDNASSSFEFAKELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNL 291
Query: 214 VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGS 273
VIY+L+Q++ QEA++LIK+LEP+ PQEYILK VV +GQ+ GSR+ +K AQ FQLVG
Sbjct: 292 VIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGG 351
Query: 274 SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKE 333
S SECDT+PGRQCMAS FFLL+ F DV++YL+S KSY+ +DD FNFN+AQAK A G E
Sbjct: 352 SASECDTIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSE 411
Query: 334 AEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
EE FLL+Q+E +KNDY+Y+S L +C K RL++ L K+ G+ SL++
Sbjct: 412 GEEAFLLIQSEKMKNDYIYLSWLARCYIMNKKPRLAWELYLKMETSGESFSLLQ 465
Score = 182 bits (462), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/140 (62%), Positives = 108/140 (77%)
Query: 358 KCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYK 417
K S SR + RL FHL+HK DEK LM +HQ L+D E+QL LASIH++R HYQEAIDIYK
Sbjct: 116 KASKSRLQNRLLFHLAHKFNDEKKLMSFHQNLQDVTEDQLSLASIHYMRSHYQEAIDIYK 175
Query: 418 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTS 477
RILLD+++ LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IALNLKACN ++L+
Sbjct: 176 RILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFRLYNG 235
Query: 478 RAAENQLKPILVSAGPRVRF 497
RAAE +LK ++ +A F
Sbjct: 236 RAAEAELKSLMDNASSSFEF 255
>sp|Q4R7Z9|TTC26_MACFA Tetratricopeptide repeat protein 26 OS=Macaca fascicularis GN=TTC26
PE=2 SV=1
Length = 554
Score = 451 bits (1160), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/414 (54%), Positives = 287/414 (69%), Gaps = 30/414 (7%)
Query: 1 MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQAN 60
+G + T+ W+GYC FHLG YK+AL YE N + N+A YF+LGMY QA
Sbjct: 52 VGEEEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAE 111
Query: 61 QILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120
K SR + RL FHL+HK DEK LM +HQ L+D E+QL LASIH++R HYQEAI
Sbjct: 112 AAGFKASKSRLQNRLLFHLAHKFNDEKKLMSFHQNLQDVTEDQLSLASIHYMRSHYQEAI 171
Query: 121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
DIYKRILLD+++ LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IALNLKACN ++
Sbjct: 172 DIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFR 231
Query: 181 LFTSRAAENQLKPIL---------------------------VSILPPLIDVIPESRLNL 213
L+ RAAE +LK ++ + +LPPL+DVIPE+RLNL
Sbjct: 232 LYNGRAAEAELKSLMDNASSSFEFAKELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNL 291
Query: 214 VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGS 273
VIY+L+Q++ QEA++LIK+LEP+ PQEYILK VV +GQ+ GSR+ +K AQ FQLVG
Sbjct: 292 VIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGG 351
Query: 274 SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKE 333
S SECDT+PGRQCMAS FFLL+ F DV++YL+S KSY+ +DD FNFN+AQAK A G E
Sbjct: 352 SASECDTIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSE 411
Query: 334 AEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
EE FLL+Q+E +KNDY+Y+S L +C K RL++ L K+ G+ SL++
Sbjct: 412 GEEAFLLIQSEKMKNDYIYLSWLARCYIMNKKPRLAWELYLKMETSGESFSLLQ 465
Score = 182 bits (462), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/140 (62%), Positives = 108/140 (77%)
Query: 358 KCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYK 417
K S SR + RL FHL+HK DEK LM +HQ L+D E+QL LASIH++R HYQEAIDIYK
Sbjct: 116 KASKSRLQNRLLFHLAHKFNDEKKLMSFHQNLQDVTEDQLSLASIHYMRSHYQEAIDIYK 175
Query: 418 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTS 477
RILLD+++ LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IALNLKACN ++L+
Sbjct: 176 RILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFRLYNG 235
Query: 478 RAAENQLKPILVSAGPRVRF 497
RAAE +LK ++ +A F
Sbjct: 236 RAAEAELKSLMDNASSSFEF 255
>sp|Q5PR66|TTC26_DANRE Tetratricopeptide repeat protein 26 OS=Danio rerio GN=ttc26 PE=2
SV=1
Length = 557
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 209/392 (53%), Positives = 277/392 (70%), Gaps = 27/392 (6%)
Query: 8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVP 67
D W G+C FH+G +K+A+ Y+ L P+ P D + F+LG+Y +A + K
Sbjct: 62 ADLWTGFCAFHVGDHKRAMEEYKALTLRPDCPVDVWVYLGCALFFLGLYKEAEEAALKGS 121
Query: 68 PSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL 127
++ + RL FHL+HK DEK LM +HQ LED E+QL LASIH++R HYQEAIDIYKRIL
Sbjct: 122 KTQLQNRLLFHLAHKFNDEKKLMGFHQNLEDVTEDQLSLASIHYMRSHYQEAIDIYKRIL 181
Query: 128 LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAA 187
L +++ LALNVY A+CYYKLDYYDVSQE +A+YL P S IALNLKACN ++L+ +AA
Sbjct: 182 LQNREFLALNVYVALCYYKLDYYDVSQEVLAVYLQSIPDSTIALNLKACNHFRLYNGKAA 241
Query: 188 ENQLKPIL---------------------------VSILPPLIDVIPESRLNLVIYHLKQ 220
E +LK ++ + +LPPLIDVI E+RLNLVIY+L+Q
Sbjct: 242 ETELKNLIDISSSSFQFAKELIQHNLVVFRGGGGALQVLPPLIDVISEARLNLVIYYLRQ 301
Query: 221 EEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDT 280
++ QEA+ LIK+LEP+ PQEYILK VV +GQ+ GSR+ +K AQ FQLVG S SECDT
Sbjct: 302 DDIQEAYKLIKDLEPTTPQEYILKGVVNAALGQEIGSRDHLKIAQQFFQLVGGSASECDT 361
Query: 281 VPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLL 340
+PGRQCMAS FFLL+ F+DV++YL+S+KSY+ +DD+F+FN+AQAK ALG Y+EAEE+FLL
Sbjct: 362 IPGRQCMASCFFLLKQFEDVLIYLNSVKSYFYNDDTFSFNYAQAKAALGNYREAEELFLL 421
Query: 341 VQNEGLKNDYVYISHLTKCSPSRAKTRLSFHL 372
+QNE +K+DYV+ S L +C K R ++ L
Sbjct: 422 IQNEKIKSDYVFQSWLARCYIMNQKPRQAWEL 453
Score = 176 bits (445), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/170 (54%), Positives = 115/170 (67%), Gaps = 18/170 (10%)
Query: 328 LGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQ 387
LG YKEAEE L K S ++ + RL FHL+HK DEK LM +HQ
Sbjct: 107 LGLYKEAEEAAL------------------KGSKTQLQNRLLFHLAHKFNDEKKLMGFHQ 148
Query: 388 KLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQ 447
LED E+QL LASIH++R HYQEAIDIYKRILL +++ LALNVY A+CYYKLDYYDVSQ
Sbjct: 149 NLEDVTEDQLSLASIHYMRSHYQEAIDIYKRILLQNREFLALNVYVALCYYKLDYYDVSQ 208
Query: 448 EQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRVRF 497
E +A+YL P S IALNLKACN ++L+ +AAE +LK ++ + +F
Sbjct: 209 EVLAVYLQSIPDSTIALNLKACNHFRLYNGKAAETELKNLIDISSSSFQF 258
>sp|Q6INU8|TT30A_XENLA Tetratricopeptide repeat protein 30A OS=Xenopus laevis GN=ttc30a
PE=2 SV=1
Length = 651
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 12/155 (7%)
Query: 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRA 71
LGYC++ + + A YE L + E+ + A + MY +A + + +
Sbjct: 48 LGYCYYQIQDFVNAADCYEQLIQISPEVEEYKLYYAQSLYKACMYPEAMKATFALDNAAY 107
Query: 72 KTR-LSFHLSHKLGDE-----KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAID--IY 123
+++ L S K G+E KSL+E Q + E ++ + + + HY+EA I
Sbjct: 108 QSKMLKLQASVKYGEEDISGAKSLVE--QMPSEDPESEINMGCLLYKEGHYEEACKKFIT 165
Query: 124 KRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVA 158
++ +K L+ N+ A+CYY + Y + + +A
Sbjct: 166 AMQVMGYKQDLSFNI--ALCYYSMKQYAPALKHIA 198
>sp|A4IHR1|TT30A_XENTR Tetratricopeptide repeat protein 30A OS=Xenopus tropicalis
GN=ttc30a PE=2 SV=1
Length = 651
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 12/155 (7%)
Query: 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRA 71
LGYC++ + + A YE L + E+ + A + MY +A + + S
Sbjct: 48 LGYCYYQIQDFVNAADCYEQLIQITPEVEEYKLYYAQSLYKACMYPEAMKATFALDSSAY 107
Query: 72 KTR-LSFHLSHKLGDE-----KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAID--IY 123
+++ L S + G+E KSL+E Q + E ++ + + + HY+EA I
Sbjct: 108 QSKMLKLQASIRYGEEDISGAKSLVE--QMPSEDPESEINMGCLLYKEGHYEEACKKFIT 165
Query: 124 KRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVA 158
++ +K L+ N+ A+CYY + Y + + +A
Sbjct: 166 AMQVMGYKQDLSYNI--ALCYYSMKQYAPALKHIA 198
>sp|P75361|SMC_MYCPN Chromosome partition protein Smc OS=Mycoplasma pneumoniae (strain
ATCC 29342 / M129) GN=smc PE=3 SV=1
Length = 982
Score = 35.8 bits (81), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 16/125 (12%)
Query: 220 QEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECD 279
Q+E Q + I LE KAV+ V + + ++ QAL +L+ Q++ +
Sbjct: 289 QQELQAVYQTINELEQR-------KAVIDVQLKNELSKKDEKHKIQALKKLIRVDQAQLE 341
Query: 280 TVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFL 339
++ + +L++ ++ L + + + T D+ N Q AL Y++A++ FL
Sbjct: 342 SLQAQ--------VLKTTSEITLLTNELSTVQTELDTTKLNLNQNSAAL-VYQQAQQEFL 392
Query: 340 LVQNE 344
QNE
Sbjct: 393 KAQNE 397
>sp|O04647|PP399_ARATH Pentatricopeptide repeat-containing protein At5g27270
OS=Arabidopsis thaliana GN=EMB976 PE=2 SV=2
Length = 1038
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 16/150 (10%)
Query: 20 GQYKQALGIYETLRHLPNPPED-TEFNIASCYFYLGMYLQANQIL-----EKVPPSRAKT 73
G +++A+G+YE +R P + T + S Y+ Y +A + K+P
Sbjct: 342 GDWEKAIGLYEDMRSQGIVPSNYTCATMLSLYYKTENYPKALSLFADMERNKIPADEVIR 401
Query: 74 RLSFHLSHKLG---DEKSLMEYHQKLEDSLEEQ--LCLASIHFLRCHYQEAIDIYKRILL 128
L + KLG D +S+ E ++L +E+ L ++ +H + +A+D+ + ++
Sbjct: 402 GLIIRIYGKLGLFHDAQSMFEETERLNLLADEKTYLAMSQVHLNSGNVVKALDVIE--MM 459
Query: 129 DHKDL-LALNVYGAM--CYYKLDYYDVSQE 155
+D+ L+ Y M CY K+ D ++E
Sbjct: 460 KTRDIPLSRFAYIVMLQCYAKIQNVDCAEE 489
>sp|P86148|RBP1_PLAF7 Reticulocyte-binding protein PFD0110w OS=Plasmodium falciparum
(isolate 3D7) GN=PFD0110w PE=3 SV=1
Length = 2971
Score = 33.1 bits (74), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 339 LLVQNEGLKNDYVYISHLTK-----CSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSL 393
LL+ E +KND +I T + S+ +L FH + + G+EK +EY + L++S
Sbjct: 1638 LLINIEKIKNDITHIKEKTNIYMIDVNKSKNNAQLYFHNTLR-GNEK--IEYLKNLKNST 1694
Query: 394 EEQLCLASIHFLRCHYQEAIDIYKRIL 420
+Q+ L + ++ + ++ DIY + +
Sbjct: 1695 NQQITLQELKQVQENVEKVKDIYNQTI 1721
>sp|Q9LRV2|PP256_ARATH Pentatricopeptide repeat-containing protein At3g26540
OS=Arabidopsis thaliana GN=PCMP-A5 PE=2 SV=1
Length = 700
Score = 32.7 bits (73), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 326 CALGQYKEAEEMFLLVQNEGLKNDYV-YISHLTKC 359
C G+ KE E+F+L++NEG+K D+V ++ L C
Sbjct: 573 CRNGRSKEVFELFMLLENEGVKPDHVTFLGILQAC 607
>sp|O88447|KLC1_MOUSE Kinesin light chain 1 OS=Mus musculus GN=Klc1 PE=1 SV=3
Length = 541
Score = 32.7 bits (73), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 22 YKQALGIYETL---RHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV 66
Y++ALGIY+T PN + T+ N+ASCY G + QA + +++
Sbjct: 360 YQRALGIYQTKLGPDRTPNVAK-TKNNLASCYLKQGKFKQAETLYKEI 406
>sp|P14922|CYC8_YEAST General transcriptional corepressor CYC8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CYC8 PE=1
SV=2
Length = 966
Score = 32.3 bits (72), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 69 SRAKTRLSF-HLSHKLGD-EKSLMEYHQKLE---DSLEEQLCLASIHFLRCHYQEAIDIY 123
S A+T LS L+ LGD +++ M Y L+ S + LA ++ R +Q A ++Y
Sbjct: 44 STAETWLSIASLAETLGDGDRAAMAYDATLQFNPSSAKALTSLAHLYRSRDMFQRAAELY 103
Query: 124 KRILLDHKDLLALNVYGAMCYYKLD 148
+R LL + +L + CY LD
Sbjct: 104 ERALLVNPELSDVWATLGHCYLMLD 128
>sp|B3R0L6|DNAA_PHYMT Chromosomal replication initiator protein DnaA OS=Phytoplasma mali
(strain AT) GN=dnaA PE=3 SV=1
Length = 455
Score = 32.3 bits (72), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 313 SDDSFNFNFAQAKCALGQYK-EAEEMFLLVQNEGLKNDY--VYISHLTKCSPSRAKTRLS 369
SD+ FN F K YK E E +F+L +NE +KN +Y+S + + S S K L+
Sbjct: 20 SDEVFNETFKNTKKV---YKYENEIIFILAENEFIKNKIYKIYLSKINEISKSFFKENLN 76
Query: 370 FHLSHK 375
F K
Sbjct: 77 FKFITK 82
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,845,544
Number of Sequences: 539616
Number of extensions: 7260872
Number of successful extensions: 17920
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 17850
Number of HSP's gapped (non-prelim): 85
length of query: 507
length of database: 191,569,459
effective HSP length: 122
effective length of query: 385
effective length of database: 125,736,307
effective search space: 48408478195
effective search space used: 48408478195
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)