Query psy12000
Match_columns 507
No_of_seqs 226 out of 2286
Neff 10.2
Searched_HMMs 46136
Date Fri Aug 16 16:09:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12000.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12000hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3785|consensus 100.0 5.8E-51 1.3E-55 364.3 41.4 411 5-425 56-493 (557)
2 TIGR02917 PEP_TPR_lipo putativ 100.0 9.4E-34 2E-38 312.5 48.7 471 8-494 365-870 (899)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 7.6E-34 1.6E-38 313.2 47.8 482 5-494 21-566 (899)
4 KOG4626|consensus 100.0 2.5E-35 5.5E-40 281.1 29.0 377 7-472 117-502 (966)
5 KOG4626|consensus 100.0 1.7E-34 3.7E-39 275.4 29.9 436 8-493 50-488 (966)
6 PRK11447 cellulose synthase su 100.0 5.3E-32 1.2E-36 301.7 46.9 463 18-494 159-704 (1157)
7 TIGR00990 3a0801s09 mitochondr 100.0 5.6E-30 1.2E-34 268.8 40.9 375 9-463 130-578 (615)
8 PRK11447 cellulose synthase su 100.0 1.9E-29 4.2E-34 281.2 45.8 408 11-491 274-741 (1157)
9 TIGR00990 3a0801s09 mitochondr 100.0 1.3E-27 2.8E-32 250.9 38.7 407 42-494 129-575 (615)
10 PRK09782 bacteriophage N4 rece 100.0 8.7E-27 1.9E-31 249.3 44.5 476 9-494 47-710 (987)
11 PRK10049 pgaA outer membrane p 100.0 7.3E-28 1.6E-32 257.3 35.0 417 13-495 22-461 (765)
12 KOG2002|consensus 100.0 5.8E-27 1.3E-31 235.3 38.2 488 3-496 159-751 (1018)
13 PRK15174 Vi polysaccharide exp 100.0 2.4E-27 5.3E-32 248.2 36.0 335 12-461 48-386 (656)
14 PRK10049 pgaA outer membrane p 100.0 1.5E-25 3.2E-30 239.6 36.9 379 8-466 51-466 (765)
15 PRK15174 Vi polysaccharide exp 100.0 1.1E-25 2.3E-30 235.9 34.6 335 103-495 45-386 (656)
16 KOG2002|consensus 100.0 8.6E-26 1.9E-30 227.0 30.5 466 5-474 198-763 (1018)
17 PRK09782 bacteriophage N4 rece 99.9 3.3E-24 7.2E-29 229.6 40.1 268 206-495 476-745 (987)
18 PRK14574 hmsH outer membrane p 99.9 4.8E-23 1E-27 216.5 45.6 457 5-495 33-518 (822)
19 KOG0547|consensus 99.9 8.7E-24 1.9E-28 197.7 29.8 370 103-491 118-567 (606)
20 PRK11788 tetratricopeptide rep 99.9 1.9E-22 4.2E-27 201.0 32.7 141 5-167 34-174 (389)
21 KOG0548|consensus 99.9 1.4E-22 3E-27 192.7 23.4 419 11-497 7-462 (539)
22 KOG2003|consensus 99.9 4.1E-22 8.9E-27 184.8 24.3 399 42-475 203-708 (840)
23 KOG1173|consensus 99.9 2.5E-21 5.4E-26 184.8 29.0 413 4-468 47-530 (611)
24 KOG0547|consensus 99.9 2.4E-20 5.1E-25 174.9 33.8 401 11-462 120-572 (606)
25 KOG3785|consensus 99.9 2.1E-22 4.5E-27 181.4 18.7 187 285-489 61-247 (557)
26 PRK11788 tetratricopeptide rep 99.9 2.1E-20 4.5E-25 186.4 28.9 309 103-495 38-356 (389)
27 KOG1126|consensus 99.9 1.2E-20 2.7E-25 183.8 24.6 302 106-462 325-626 (638)
28 KOG2076|consensus 99.9 2.5E-18 5.5E-23 172.6 40.6 454 9-494 142-738 (895)
29 PRK14574 hmsH outer membrane p 99.9 5E-19 1.1E-23 186.3 37.2 406 11-467 73-524 (822)
30 PLN03077 Protein ECB2; Provisi 99.9 3.8E-18 8.2E-23 186.4 42.7 357 103-489 326-719 (857)
31 KOG1126|consensus 99.9 4.1E-20 9E-25 180.1 23.3 285 13-349 326-625 (638)
32 KOG1155|consensus 99.9 8.8E-18 1.9E-22 156.9 34.7 314 104-492 231-555 (559)
33 PLN03081 pentatricopeptide (PP 99.9 8.7E-18 1.9E-22 179.3 39.6 450 12-490 93-557 (697)
34 KOG0624|consensus 99.8 1.3E-18 2.7E-23 156.6 25.6 333 101-497 39-377 (504)
35 KOG1174|consensus 99.8 2.5E-17 5.3E-22 151.8 32.9 395 11-464 48-508 (564)
36 PLN03081 pentatricopeptide (PP 99.8 5.3E-17 1.1E-21 173.4 39.4 417 7-456 124-557 (697)
37 PLN03218 maturation of RBCL 1; 99.8 1.5E-16 3.3E-21 172.2 43.1 427 7-459 371-819 (1060)
38 KOG2076|consensus 99.8 1.5E-17 3.3E-22 167.2 32.3 343 103-502 142-522 (895)
39 PLN03077 Protein ECB2; Provisi 99.8 6.8E-17 1.5E-21 176.6 37.5 412 12-454 228-718 (857)
40 PF13429 TPR_15: Tetratricopep 99.8 7.3E-20 1.6E-24 173.4 10.8 264 103-455 11-276 (280)
41 KOG1155|consensus 99.8 3.5E-16 7.7E-21 146.3 33.7 356 103-488 167-534 (559)
42 PF13429 TPR_15: Tetratricopep 99.8 1.8E-19 4E-24 170.7 11.5 256 7-342 9-275 (280)
43 PRK12370 invasion protein regu 99.8 1.4E-17 3.1E-22 172.0 25.7 191 19-239 274-473 (553)
44 PLN03218 maturation of RBCL 1; 99.8 1.6E-15 3.4E-20 164.4 40.4 417 13-470 413-857 (1060)
45 TIGR00540 hemY_coli hemY prote 99.8 5.5E-17 1.2E-21 161.6 26.9 299 9-342 87-397 (409)
46 TIGR00540 hemY_coli hemY prote 99.8 1.3E-16 2.8E-21 159.0 28.7 301 103-490 87-399 (409)
47 KOG0495|consensus 99.8 9.7E-15 2.1E-19 141.9 39.6 347 103-464 519-888 (913)
48 KOG4340|consensus 99.8 3.2E-17 7E-22 145.0 18.5 222 10-232 48-335 (459)
49 PRK12370 invasion protein regu 99.8 5.8E-17 1.3E-21 167.5 23.6 161 286-492 343-504 (553)
50 KOG2003|consensus 99.8 7.8E-16 1.7E-20 143.4 26.4 413 7-441 238-708 (840)
51 KOG1173|consensus 99.8 3.2E-15 6.9E-20 143.4 30.4 428 15-494 25-522 (611)
52 KOG1840|consensus 99.7 1.3E-15 2.7E-20 150.6 27.3 315 43-456 131-479 (508)
53 KOG4162|consensus 99.7 1E-14 2.2E-19 144.7 33.2 186 11-196 328-541 (799)
54 KOG0624|consensus 99.7 3.5E-15 7.6E-20 134.6 27.3 312 7-349 39-375 (504)
55 PRK10747 putative protoheme IX 99.7 1.5E-15 3.3E-20 150.6 27.9 297 10-343 88-389 (398)
56 KOG0548|consensus 99.7 1.5E-14 3.3E-19 138.3 31.7 348 12-452 42-485 (539)
57 TIGR02521 type_IV_pilW type IV 99.7 7.3E-16 1.6E-20 141.6 21.3 197 6-233 31-229 (234)
58 PRK11189 lipoprotein NlpI; Pro 99.7 8.1E-16 1.8E-20 146.1 20.7 124 19-168 39-166 (296)
59 PRK10747 putative protoheme IX 99.7 4.3E-14 9.2E-19 140.2 33.5 298 103-490 87-390 (398)
60 KOG0550|consensus 99.7 1.1E-15 2.3E-20 141.3 17.8 296 103-492 52-352 (486)
61 KOG2376|consensus 99.7 1.7E-13 3.6E-18 132.3 33.4 218 12-233 18-250 (652)
62 KOG4162|consensus 99.7 1.7E-12 3.7E-17 129.1 41.1 388 103-498 326-791 (799)
63 TIGR02521 type_IV_pilW type IV 99.7 4.8E-15 1E-19 136.1 22.1 198 102-342 33-230 (234)
64 PRK11189 lipoprotein NlpI; Pro 99.7 3.6E-15 7.8E-20 141.7 20.0 202 7-240 65-269 (296)
65 KOG1174|consensus 99.7 4.8E-14 1E-18 130.3 26.3 306 6-351 195-507 (564)
66 KOG1125|consensus 99.7 1.7E-15 3.7E-20 145.9 17.6 241 103-459 288-530 (579)
67 KOG1129|consensus 99.7 9.8E-16 2.1E-20 137.3 14.7 154 12-192 229-382 (478)
68 COG3063 PilF Tfp pilus assembl 99.7 4.2E-15 9.2E-20 127.6 17.9 163 7-195 36-200 (250)
69 KOG0495|consensus 99.7 1.6E-12 3.5E-17 126.8 37.7 462 18-495 263-787 (913)
70 KOG1127|consensus 99.7 4.2E-14 9E-19 143.4 26.3 160 10-169 496-665 (1238)
71 KOG1156|consensus 99.7 8.1E-13 1.8E-17 129.0 33.0 398 7-473 8-450 (700)
72 KOG0550|consensus 99.6 4.9E-14 1.1E-18 130.4 20.5 273 9-344 52-350 (486)
73 KOG1129|consensus 99.6 2.7E-14 5.9E-19 128.1 18.1 266 12-346 185-460 (478)
74 COG2956 Predicted N-acetylgluc 99.6 3.3E-13 7.2E-18 121.2 24.2 265 141-493 42-314 (389)
75 KOG1840|consensus 99.6 1.1E-13 2.3E-18 137.1 23.0 255 36-342 195-477 (508)
76 COG2956 Predicted N-acetylgluc 99.6 1.8E-12 3.9E-17 116.6 28.4 201 104-346 39-245 (389)
77 cd05804 StaR_like StaR_like; a 99.6 1.3E-12 2.8E-17 128.5 27.7 302 4-343 4-335 (355)
78 COG3063 PilF Tfp pilus assembl 99.6 3.7E-13 8E-18 115.8 19.8 127 103-232 38-164 (250)
79 TIGR03302 OM_YfiO outer membra 99.6 8.5E-14 1.8E-18 128.4 17.1 170 6-234 33-230 (235)
80 KOG1156|consensus 99.6 2.5E-11 5.4E-16 118.8 34.1 408 7-423 42-512 (700)
81 PLN02789 farnesyltranstransfer 99.6 9.2E-13 2E-17 125.0 23.0 241 106-494 43-306 (320)
82 KOG1125|consensus 99.6 1.3E-13 2.8E-18 133.2 16.4 218 10-232 289-523 (579)
83 KOG2376|consensus 99.5 2.7E-11 5.9E-16 117.3 31.6 388 10-449 83-513 (652)
84 cd05804 StaR_like StaR_like; a 99.5 8.6E-12 1.9E-16 122.7 29.0 304 101-456 7-336 (355)
85 TIGR03302 OM_YfiO outer membra 99.5 1.9E-12 4.1E-17 119.4 18.7 177 281-492 33-234 (235)
86 PRK15359 type III secretion sy 99.5 7.9E-13 1.7E-17 111.1 12.9 123 26-177 13-135 (144)
87 KOG1127|consensus 99.5 1.1E-10 2.3E-15 119.2 28.9 224 8-232 461-696 (1238)
88 PLN02789 farnesyltranstransfer 99.5 1.3E-11 2.8E-16 117.2 21.3 187 15-232 46-246 (320)
89 PRK15359 type III secretion sy 99.4 1.1E-12 2.4E-17 110.3 12.0 124 302-472 14-137 (144)
90 PRK14720 transcript cleavage f 99.4 1.8E-11 4E-16 128.1 23.5 231 9-326 34-268 (906)
91 PF12569 NARP1: NMDA receptor- 99.4 2.5E-10 5.5E-15 114.6 30.8 307 102-422 6-334 (517)
92 PF12569 NARP1: NMDA receptor- 99.4 2.8E-10 6E-15 114.4 30.3 262 6-272 4-339 (517)
93 PRK10370 formate-dependent nit 99.4 4.3E-12 9.4E-17 112.5 13.9 125 19-169 52-179 (198)
94 KOG1915|consensus 99.4 3.8E-08 8.2E-13 93.4 38.9 428 15-492 82-538 (677)
95 PRK14720 transcript cleavage f 99.4 1.2E-10 2.7E-15 122.0 22.5 189 283-503 118-318 (906)
96 TIGR02552 LcrH_SycD type III s 99.3 1.8E-11 3.9E-16 102.3 13.3 118 27-170 4-121 (135)
97 KOG4340|consensus 99.3 8.7E-09 1.9E-13 92.1 29.5 182 16-233 20-204 (459)
98 COG3071 HemY Uncharacterized e 99.3 2.6E-09 5.6E-14 99.4 26.5 293 13-342 91-388 (400)
99 PRK10370 formate-dependent nit 99.3 1.7E-10 3.6E-15 102.4 15.7 125 294-462 52-179 (198)
100 PF04733 Coatomer_E: Coatomer 99.3 9.9E-11 2.1E-15 109.8 13.8 248 12-346 7-267 (290)
101 KOG1130|consensus 99.2 2E-10 4.4E-15 106.6 15.3 278 105-456 22-344 (639)
102 TIGR02552 LcrH_SycD type III s 99.2 1.1E-10 2.5E-15 97.4 12.3 120 303-466 5-124 (135)
103 PF04733 Coatomer_E: Coatomer 99.2 2.8E-10 6E-15 106.8 15.0 160 286-494 107-269 (290)
104 PRK15179 Vi polysaccharide bio 99.2 3E-10 6.5E-15 118.3 16.5 140 5-170 85-224 (694)
105 COG5010 TadD Flp pilus assembl 99.2 1.4E-09 3E-14 96.1 18.0 177 24-232 51-227 (257)
106 COG3071 HemY Uncharacterized e 99.2 6E-08 1.3E-12 90.5 29.4 298 103-490 87-390 (400)
107 PRK04841 transcriptional regul 99.2 7.9E-08 1.7E-12 106.7 35.5 384 41-462 342-766 (903)
108 KOG0553|consensus 99.2 2.3E-10 4.9E-15 102.9 11.6 114 12-151 87-200 (304)
109 KOG1128|consensus 99.2 1.2E-09 2.6E-14 108.7 17.4 211 10-233 402-613 (777)
110 PRK10866 outer membrane biogen 99.2 4.1E-09 8.8E-14 96.6 19.6 196 101-341 33-238 (243)
111 PF13525 YfiO: Outer membrane 99.2 1.1E-09 2.3E-14 98.1 15.3 158 5-185 4-195 (203)
112 PRK15363 pathogenicity island 99.2 5.7E-10 1.2E-14 92.1 12.0 95 101-195 36-130 (157)
113 PRK15179 Vi polysaccharide bio 99.1 1E-09 2.2E-14 114.5 16.4 143 28-196 74-216 (694)
114 PF13525 YfiO: Outer membrane 99.1 2.7E-09 5.9E-14 95.4 17.1 182 101-336 6-199 (203)
115 PF13432 TPR_16: Tetratricopep 99.1 2.5E-10 5.3E-15 81.8 7.8 65 104-168 1-65 (65)
116 KOG1130|consensus 99.1 2.3E-09 5.1E-14 99.7 15.5 291 13-342 24-342 (639)
117 KOG1915|consensus 99.1 2.7E-06 5.8E-11 81.2 35.7 415 27-492 60-501 (677)
118 COG5010 TadD Flp pilus assembl 99.1 3.9E-09 8.4E-14 93.3 15.9 156 10-191 70-225 (257)
119 PRK10866 outer membrane biogen 99.1 6.8E-09 1.5E-13 95.1 17.5 155 5-168 31-209 (243)
120 PF13414 TPR_11: TPR repeat; P 99.1 6.6E-10 1.4E-14 80.6 8.8 65 101-165 4-69 (69)
121 PRK15363 pathogenicity island 99.1 1.3E-09 2.9E-14 89.9 10.2 101 394-494 36-136 (157)
122 PF13432 TPR_16: Tetratricopep 99.0 5.8E-10 1.3E-14 79.8 6.5 63 399-461 3-65 (65)
123 PRK04841 transcriptional regul 99.0 1.7E-07 3.6E-12 104.2 28.9 234 103-344 494-760 (903)
124 PLN03088 SGT1, suppressor of 99.0 2.8E-09 6E-14 103.8 12.9 113 9-147 5-117 (356)
125 TIGR02795 tol_pal_ybgF tol-pal 99.0 8.7E-09 1.9E-13 83.7 13.3 68 103-170 42-112 (119)
126 KOG2047|consensus 99.0 4.5E-05 9.8E-10 75.7 40.3 321 19-344 151-540 (835)
127 KOG3060|consensus 99.0 8.2E-08 1.8E-12 84.2 19.3 168 283-464 54-228 (289)
128 COG4783 Putative Zn-dependent 99.0 2E-08 4.4E-13 96.1 15.4 149 37-233 303-451 (484)
129 PF14559 TPR_19: Tetratricopep 99.0 2.1E-09 4.6E-14 77.7 6.8 66 111-176 2-67 (68)
130 COG4783 Putative Zn-dependent 99.0 5.4E-08 1.2E-12 93.3 17.8 120 104-228 310-429 (484)
131 KOG3060|consensus 98.9 1.6E-07 3.5E-12 82.4 19.2 145 12-182 58-202 (289)
132 PF12895 Apc3: Anaphase-promot 98.9 2.2E-09 4.7E-14 81.3 6.7 80 112-192 1-82 (84)
133 KOG0553|consensus 98.9 1E-08 2.3E-13 92.3 11.6 92 103-194 84-175 (304)
134 PLN03088 SGT1, suppressor of 98.9 1.7E-08 3.7E-13 98.3 14.0 109 103-216 5-113 (356)
135 PF09976 TPR_21: Tetratricopep 98.9 3.1E-08 6.8E-13 83.6 13.3 126 11-160 16-144 (145)
136 KOG1128|consensus 98.9 7.4E-08 1.6E-12 96.2 17.3 153 172-350 402-554 (777)
137 PF13414 TPR_11: TPR repeat; P 98.9 5.2E-09 1.1E-13 75.9 7.0 62 397-458 7-69 (69)
138 TIGR02795 tol_pal_ybgF tol-pal 98.9 1.5E-08 3.3E-13 82.3 10.6 99 397-495 6-110 (119)
139 PF14559 TPR_19: Tetratricopep 98.9 2.9E-09 6.3E-14 77.0 4.9 66 405-470 3-68 (68)
140 KOG3081|consensus 98.8 1.5E-06 3.2E-11 77.1 21.5 250 8-342 10-268 (299)
141 PF09976 TPR_21: Tetratricopep 98.8 1.3E-07 2.8E-12 79.8 14.8 119 107-231 18-142 (145)
142 PRK02603 photosystem I assembl 98.8 7.4E-08 1.6E-12 83.9 13.6 87 103-189 38-127 (172)
143 KOG3081|consensus 98.8 5.7E-07 1.2E-11 79.7 18.8 250 218-494 19-275 (299)
144 PF13371 TPR_9: Tetratricopept 98.8 1.9E-08 4.2E-13 73.8 8.0 70 106-175 1-70 (73)
145 cd00189 TPR Tetratricopeptide 98.8 6.4E-08 1.4E-12 74.4 10.4 91 103-193 3-93 (100)
146 CHL00033 ycf3 photosystem I as 98.8 9E-08 1.9E-12 83.1 12.1 130 16-168 9-154 (168)
147 COG4235 Cytochrome c biogenesi 98.8 1.5E-07 3.2E-12 85.6 13.6 123 21-169 137-262 (287)
148 PRK10803 tol-pal system protei 98.8 7.2E-08 1.6E-12 89.0 11.8 68 103-170 183-253 (263)
149 KOG2047|consensus 98.8 0.00029 6.4E-09 70.1 38.1 88 286-374 352-449 (835)
150 PF13371 TPR_9: Tetratricopept 98.8 1.5E-08 3.3E-13 74.3 5.9 69 401-469 3-71 (73)
151 cd00189 TPR Tetratricopeptide 98.8 5.6E-08 1.2E-12 74.8 9.2 95 399-493 6-100 (100)
152 PF13512 TPR_18: Tetratricopep 98.7 1.1E-07 2.3E-12 77.3 10.3 96 400-495 17-133 (142)
153 CHL00033 ycf3 photosystem I as 98.7 2.4E-07 5.3E-12 80.3 13.2 77 103-179 38-117 (168)
154 PF14938 SNAP: Soluble NSF att 98.7 4.5E-07 9.7E-12 85.7 16.0 175 103-345 38-226 (282)
155 PRK02603 photosystem I assembl 98.7 1E-07 2.3E-12 83.0 10.5 108 38-168 33-154 (172)
156 PRK10803 tol-pal system protei 98.7 6.6E-08 1.4E-12 89.2 9.6 90 406-495 156-251 (263)
157 COG4105 ComL DNA uptake lipopr 98.7 1.3E-06 2.8E-11 77.8 17.1 186 102-341 36-230 (254)
158 PF14938 SNAP: Soluble NSF att 98.7 1.4E-06 3E-11 82.4 17.6 204 12-238 41-268 (282)
159 PRK10153 DNA-binding transcrip 98.7 6.3E-07 1.4E-11 91.0 16.0 136 10-170 343-489 (517)
160 COG1729 Uncharacterized protei 98.7 2.8E-07 6.2E-12 82.8 11.8 105 9-136 144-251 (262)
161 COG4105 ComL DNA uptake lipopr 98.7 1.6E-06 3.4E-11 77.3 16.0 184 285-506 38-248 (254)
162 KOG2053|consensus 98.7 0.00066 1.4E-08 70.3 36.6 184 16-231 19-214 (932)
163 COG4235 Cytochrome c biogenesi 98.6 9.5E-07 2.1E-11 80.4 14.5 104 92-195 145-254 (287)
164 COG4785 NlpI Lipoprotein NlpI, 98.6 1.9E-06 4.1E-11 74.0 15.2 92 103-194 68-159 (297)
165 PRK15331 chaperone protein Sic 98.6 1.9E-07 4.2E-12 77.6 9.1 108 310-462 32-139 (165)
166 PF12895 Apc3: Anaphase-promot 98.6 4.6E-08 1E-12 73.9 4.8 80 406-486 2-83 (84)
167 KOG0543|consensus 98.6 8.3E-07 1.8E-11 83.7 13.5 119 43-172 211-329 (397)
168 PF13512 TPR_18: Tetratricopep 98.6 9.6E-07 2.1E-11 71.8 11.2 81 101-181 11-97 (142)
169 KOG0543|consensus 98.6 1E-06 2.2E-11 83.1 12.8 116 103-223 211-341 (397)
170 PRK15331 chaperone protein Sic 98.5 6.9E-07 1.5E-11 74.3 9.9 93 102-194 39-131 (165)
171 PRK11906 transcriptional regul 98.5 6.1E-06 1.3E-10 79.9 17.5 142 10-177 259-415 (458)
172 KOG4234|consensus 98.5 4.1E-07 8.9E-12 76.9 7.6 95 400-494 102-201 (271)
173 COG1729 Uncharacterized protei 98.5 1E-06 2.3E-11 79.2 10.6 111 318-469 144-257 (262)
174 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 2.5E-06 5.5E-11 82.9 13.2 118 15-161 178-295 (395)
175 KOG1070|consensus 98.5 4.5E-05 9.9E-10 81.8 23.0 204 25-233 1443-1660(1710)
176 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 4.2E-06 9.1E-11 81.4 14.5 120 106-233 175-294 (395)
177 PF12688 TPR_5: Tetratrico pep 98.5 2.4E-06 5.2E-11 68.4 10.7 66 103-168 4-72 (120)
178 PF12688 TPR_5: Tetratrico pep 98.4 3.5E-06 7.7E-11 67.4 11.5 99 41-162 2-103 (120)
179 KOG3616|consensus 98.4 0.00043 9.4E-09 69.8 27.8 306 105-461 711-1029(1636)
180 KOG1941|consensus 98.4 0.00011 2.4E-09 68.1 21.8 310 103-454 9-358 (518)
181 COG4785 NlpI Lipoprotein NlpI, 98.4 6.4E-06 1.4E-10 70.8 12.5 65 105-169 104-168 (297)
182 KOG3617|consensus 98.3 0.00058 1.2E-08 69.9 25.5 352 26-446 789-1190(1416)
183 PF13424 TPR_12: Tetratricopep 98.3 2.5E-06 5.3E-11 63.4 6.8 61 103-163 8-75 (78)
184 KOG4234|consensus 98.3 1.6E-05 3.6E-10 67.4 12.2 105 45-170 100-204 (271)
185 KOG4648|consensus 98.3 8.2E-07 1.8E-11 81.2 4.7 99 399-497 103-201 (536)
186 PRK10153 DNA-binding transcrip 98.3 1.4E-05 3E-10 81.4 13.7 72 399-472 426-497 (517)
187 KOG3617|consensus 98.2 0.00091 2E-08 68.5 25.5 254 18-342 740-994 (1416)
188 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 3.9E-06 8.4E-11 81.1 8.6 64 100-163 75-141 (453)
189 KOG1941|consensus 98.2 0.00057 1.2E-08 63.6 21.2 63 1-63 1-66 (518)
190 PRK11906 transcriptional regul 98.2 3.7E-05 8E-10 74.6 13.8 154 297-494 274-440 (458)
191 COG4700 Uncharacterized protei 98.2 0.00021 4.6E-09 60.2 16.2 145 82-232 69-218 (251)
192 KOG3616|consensus 98.2 0.0042 9.1E-08 63.0 28.0 153 290-453 741-908 (1636)
193 COG4700 Uncharacterized protei 98.1 0.00019 4.2E-09 60.4 15.2 165 257-473 72-241 (251)
194 PF06552 TOM20_plant: Plant sp 98.1 4.3E-05 9.4E-10 64.3 11.0 98 22-169 7-115 (186)
195 KOG2796|consensus 98.0 5.3E-05 1.1E-09 67.2 10.9 138 12-169 183-321 (366)
196 COG0457 NrfG FOG: TPR repeat [ 98.0 0.00096 2.1E-08 60.3 20.4 49 19-67 36-86 (291)
197 PF13428 TPR_14: Tetratricopep 98.0 1.1E-05 2.4E-10 52.1 4.9 40 103-142 4-43 (44)
198 KOG4648|consensus 98.0 3.5E-05 7.6E-10 70.8 9.2 104 12-141 103-206 (536)
199 PF13428 TPR_14: Tetratricopep 98.0 9.5E-06 2.1E-10 52.5 4.1 42 7-48 2-43 (44)
200 KOG2796|consensus 98.0 0.0006 1.3E-08 60.7 15.9 141 285-463 181-322 (366)
201 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 2.6E-05 5.6E-10 75.6 8.1 68 277-344 71-141 (453)
202 PF13424 TPR_12: Tetratricopep 98.0 1.2E-05 2.6E-10 59.6 4.5 59 398-456 10-75 (78)
203 KOG4642|consensus 97.9 3.7E-05 8.1E-10 67.2 8.1 91 105-195 15-105 (284)
204 COG0457 NrfG FOG: TPR repeat [ 97.9 0.0024 5.3E-08 57.6 21.0 200 103-346 62-267 (291)
205 PF13431 TPR_17: Tetratricopep 97.9 8.6E-06 1.9E-10 49.1 2.8 34 122-155 1-34 (34)
206 COG3118 Thioredoxin domain-con 97.9 0.00039 8.5E-09 63.3 14.1 134 6-165 134-267 (304)
207 KOG2053|consensus 97.9 0.04 8.7E-07 57.6 29.3 59 289-347 198-258 (932)
208 KOG0545|consensus 97.9 6.4E-05 1.4E-09 66.0 8.2 95 400-494 185-297 (329)
209 PF13431 TPR_17: Tetratricopep 97.9 1E-05 2.2E-10 48.8 2.3 33 28-60 1-33 (34)
210 KOG4555|consensus 97.8 0.00034 7.4E-09 55.3 10.7 92 104-195 47-142 (175)
211 PF07079 DUF1347: Protein of u 97.8 0.039 8.5E-07 53.4 26.1 199 141-342 305-522 (549)
212 KOG4555|consensus 97.8 0.00063 1.4E-08 53.8 11.4 99 12-133 49-148 (175)
213 KOG1070|consensus 97.7 0.004 8.7E-08 67.6 20.1 228 203-482 1454-1690(1710)
214 PF07719 TPR_2: Tetratricopept 97.7 3.6E-05 7.8E-10 46.5 3.0 33 428-460 2-34 (34)
215 PF00515 TPR_1: Tetratricopept 97.7 3.6E-05 7.8E-10 46.6 2.8 33 428-460 2-34 (34)
216 PF00515 TPR_1: Tetratricopept 97.7 7.4E-05 1.6E-09 45.2 4.2 32 135-166 2-33 (34)
217 COG3118 Thioredoxin domain-con 97.7 0.0037 8.1E-08 57.1 16.4 142 87-235 120-264 (304)
218 PF06552 TOM20_plant: Plant sp 97.7 0.00032 7E-09 59.1 8.9 55 409-463 51-116 (186)
219 COG2909 MalT ATP-dependent tra 97.6 0.067 1.5E-06 56.2 27.0 302 39-343 346-687 (894)
220 COG3898 Uncharacterized membra 97.6 0.011 2.4E-07 55.9 19.2 224 7-238 121-360 (531)
221 PF07719 TPR_2: Tetratricopept 97.6 0.00013 2.8E-09 44.0 4.6 33 135-167 2-34 (34)
222 PF14853 Fis1_TPR_C: Fis1 C-te 97.6 0.00012 2.5E-09 48.9 3.9 42 429-470 3-44 (53)
223 PF10300 DUF3808: Protein of u 97.6 0.0017 3.8E-08 65.7 14.3 121 18-160 245-373 (468)
224 KOG2471|consensus 97.5 0.016 3.5E-07 56.3 19.5 52 15-66 215-266 (696)
225 PF04184 ST7: ST7 protein; In 97.5 0.025 5.4E-07 55.5 20.9 156 283-471 261-429 (539)
226 PF10300 DUF3808: Protein of u 97.5 0.13 2.7E-06 52.3 27.2 122 294-455 246-375 (468)
227 KOG1914|consensus 97.5 0.14 3.1E-06 50.8 28.9 82 409-490 382-464 (656)
228 KOG3364|consensus 97.5 0.00051 1.1E-08 54.7 6.9 78 396-473 35-117 (149)
229 PF13174 TPR_6: Tetratricopept 97.4 0.00011 2.4E-09 44.0 2.5 32 429-460 2-33 (33)
230 KOG0545|consensus 97.4 0.0029 6.2E-08 55.9 11.8 119 42-169 180-299 (329)
231 KOG4642|consensus 97.4 0.00023 5E-09 62.4 5.0 86 402-487 19-104 (284)
232 COG3898 Uncharacterized membra 97.4 0.14 3E-06 48.8 23.3 218 113-344 167-392 (531)
233 KOG0551|consensus 97.4 0.004 8.7E-08 57.5 12.8 91 103-193 84-178 (390)
234 PF13174 TPR_6: Tetratricopept 97.4 0.00032 7E-09 41.9 4.0 31 136-166 2-32 (33)
235 KOG1586|consensus 97.3 0.095 2E-06 46.3 19.9 66 103-168 116-188 (288)
236 KOG0376|consensus 97.3 0.00023 5E-09 68.9 4.5 94 403-496 14-107 (476)
237 PF14853 Fis1_TPR_C: Fis1 C-te 97.2 0.0011 2.5E-08 44.2 5.6 43 135-177 2-44 (53)
238 PF04184 ST7: ST7 protein; In 97.2 0.007 1.5E-07 59.2 13.0 150 13-169 175-331 (539)
239 KOG0376|consensus 97.2 0.00047 1E-08 66.8 5.1 90 105-194 9-98 (476)
240 KOG1585|consensus 97.2 0.0078 1.7E-07 53.3 12.0 102 41-162 32-138 (308)
241 KOG1586|consensus 97.2 0.016 3.4E-07 51.1 13.7 162 7-169 35-230 (288)
242 COG2976 Uncharacterized protei 97.2 0.0056 1.2E-07 52.4 10.4 121 24-168 70-193 (207)
243 KOG2300|consensus 97.1 0.29 6.4E-06 48.0 32.4 117 7-123 8-150 (629)
244 PF13181 TPR_8: Tetratricopept 97.1 0.00037 7.9E-09 42.0 2.3 33 428-460 2-34 (34)
245 PF13181 TPR_8: Tetratricopept 97.1 0.00092 2E-08 40.2 3.8 32 135-166 2-33 (34)
246 PF08631 SPO22: Meiosis protei 97.1 0.28 6.1E-06 46.2 23.0 128 51-196 4-149 (278)
247 KOG2610|consensus 97.1 0.08 1.7E-06 49.3 17.6 97 141-238 110-206 (491)
248 KOG2610|consensus 97.0 0.01 2.2E-07 54.9 11.5 146 86-232 120-272 (491)
249 KOG1585|consensus 96.8 0.21 4.6E-06 44.5 17.7 165 8-193 33-215 (308)
250 PF03704 BTAD: Bacterial trans 96.8 0.037 8E-07 46.4 12.7 59 103-161 65-123 (146)
251 KOG2471|consensus 96.8 0.0028 6E-08 61.4 6.1 136 5-148 239-383 (696)
252 PF14561 TPR_20: Tetratricopep 96.7 0.014 3E-07 44.2 8.5 49 119-167 7-55 (90)
253 PRK10941 hypothetical protein; 96.7 0.0062 1.3E-07 56.4 7.7 72 399-470 187-258 (269)
254 KOG0985|consensus 96.7 1.2 2.7E-05 47.8 27.6 345 39-453 983-1338(1666)
255 KOG0551|consensus 96.6 0.017 3.7E-07 53.5 10.0 107 42-171 83-190 (390)
256 PF02259 FAT: FAT domain; Int 96.6 0.57 1.2E-05 45.7 21.9 142 283-440 148-305 (352)
257 COG2976 Uncharacterized protei 96.6 0.036 7.8E-07 47.6 10.8 91 103-194 92-185 (207)
258 KOG1308|consensus 96.6 0.0017 3.6E-08 60.3 3.1 87 403-489 124-210 (377)
259 PF03704 BTAD: Bacterial trans 96.5 0.042 9.1E-07 46.1 11.4 89 106-194 12-122 (146)
260 KOG3364|consensus 96.5 0.016 3.6E-07 46.3 7.8 75 103-177 35-114 (149)
261 KOG4507|consensus 96.5 0.28 6E-06 49.2 17.6 59 407-465 656-714 (886)
262 PF09613 HrpB1_HrpK: Bacterial 96.4 0.037 8E-07 46.3 9.7 82 103-184 13-94 (160)
263 PF13176 TPR_7: Tetratricopept 96.4 0.0057 1.2E-07 37.3 3.7 24 104-127 3-26 (36)
264 PF13176 TPR_7: Tetratricopept 96.4 0.0059 1.3E-07 37.2 3.7 32 136-167 1-34 (36)
265 PRK10941 hypothetical protein; 96.2 0.033 7.3E-07 51.6 9.6 74 103-176 184-257 (269)
266 KOG1308|consensus 96.2 0.0018 4E-08 60.0 1.0 90 105-194 119-208 (377)
267 PF05843 Suf: Suppressor of fo 96.1 0.16 3.4E-06 47.9 13.9 122 105-230 6-130 (280)
268 PF10345 Cohesin_load: Cohesin 96.1 2.4 5.1E-05 45.0 35.5 54 286-339 366-428 (608)
269 KOG1550|consensus 96.1 2.1 4.6E-05 44.7 22.9 288 115-462 227-544 (552)
270 PF05843 Suf: Suppressor of fo 96.0 0.3 6.5E-06 46.0 14.9 129 14-168 9-141 (280)
271 COG4649 Uncharacterized protei 95.9 0.87 1.9E-05 38.5 16.1 142 102-247 60-209 (221)
272 PF08631 SPO22: Meiosis protei 95.9 1.5 3.3E-05 41.3 22.4 118 111-233 4-147 (278)
273 COG2909 MalT ATP-dependent tra 95.9 3.1 6.8E-05 44.3 24.5 188 132-329 345-551 (894)
274 smart00028 TPR Tetratricopepti 95.8 0.0081 1.8E-07 34.9 2.5 32 429-460 3-34 (34)
275 smart00028 TPR Tetratricopepti 95.8 0.017 3.6E-07 33.4 3.8 31 136-166 3-33 (34)
276 KOG1550|consensus 95.8 2 4.4E-05 44.8 21.4 126 9-164 247-394 (552)
277 PF13281 DUF4071: Domain of un 95.6 1.1 2.3E-05 43.6 17.1 141 103-244 182-342 (374)
278 PF07079 DUF1347: Protein of u 95.6 2.6 5.6E-05 41.4 34.2 51 401-452 470-520 (549)
279 KOG1538|consensus 95.5 1.9 4.2E-05 44.0 18.6 56 12-68 591-660 (1081)
280 TIGR02561 HrpB1_HrpK type III 95.5 0.35 7.6E-06 39.8 11.2 76 108-183 18-93 (153)
281 KOG4814|consensus 95.4 0.12 2.5E-06 52.3 10.0 93 103-195 357-455 (872)
282 KOG1538|consensus 95.2 4.3 9.3E-05 41.7 20.6 93 14-125 564-657 (1081)
283 KOG2041|consensus 95.1 4.8 0.00011 41.7 21.4 180 33-232 686-877 (1189)
284 KOG3824|consensus 95.0 0.073 1.6E-06 48.9 6.5 72 104-175 120-191 (472)
285 PF09613 HrpB1_HrpK: Bacterial 94.9 0.13 2.9E-06 43.0 7.5 47 397-443 48-94 (160)
286 PF14561 TPR_20: Tetratricopep 94.9 0.076 1.7E-06 40.2 5.6 49 412-460 7-55 (90)
287 KOG0985|consensus 94.8 7.3 0.00016 42.3 31.2 184 20-233 1089-1305(1666)
288 PF13281 DUF4071: Domain of un 94.8 4.3 9.2E-05 39.5 22.3 25 287-311 311-335 (374)
289 COG4649 Uncharacterized protei 94.7 2.4 5.2E-05 36.0 15.5 42 283-325 169-210 (221)
290 PF04910 Tcf25: Transcriptiona 94.6 0.57 1.2E-05 45.7 12.4 37 31-67 31-67 (360)
291 PRK13184 pknD serine/threonine 94.6 9.2 0.0002 42.2 26.0 98 11-135 480-587 (932)
292 PF10345 Cohesin_load: Cohesin 94.5 7.7 0.00017 41.2 30.5 65 399-463 367-448 (608)
293 PF04910 Tcf25: Transcriptiona 94.4 2.1 4.6E-05 41.8 15.6 37 125-161 31-67 (360)
294 KOG0890|consensus 94.2 14 0.0003 44.1 23.0 66 104-169 1453-1518(2382)
295 PF10602 RPN7: 26S proteasome 94.2 3.1 6.7E-05 36.1 14.7 100 103-237 39-143 (177)
296 KOG2041|consensus 94.1 8.6 0.00019 40.0 25.7 183 127-341 686-878 (1189)
297 PF09986 DUF2225: Uncharacteri 94.1 0.23 5E-06 44.5 7.6 62 103-164 121-195 (214)
298 PF02259 FAT: FAT domain; Int 93.9 6.8 0.00015 38.1 25.2 52 12-67 4-56 (352)
299 KOG1464|consensus 93.8 5.3 0.00011 36.5 16.2 111 19-130 40-175 (440)
300 KOG3783|consensus 93.7 8.7 0.00019 38.7 24.5 61 284-344 452-520 (546)
301 KOG1464|consensus 93.5 2.8 6.2E-05 38.2 13.3 115 113-233 40-171 (440)
302 PF08424 NRDE-2: NRDE-2, neces 93.4 3.8 8.2E-05 39.5 15.3 117 114-232 45-179 (321)
303 COG4976 Predicted methyltransf 93.3 0.13 2.9E-06 45.3 4.6 62 108-169 3-64 (287)
304 KOG2300|consensus 93.0 10 0.00023 37.7 33.1 133 211-344 327-474 (629)
305 COG4976 Predicted methyltransf 93.0 0.12 2.5E-06 45.6 3.8 58 406-463 8-65 (287)
306 PF04053 Coatomer_WDAD: Coatom 92.9 5.4 0.00012 40.2 15.9 125 14-156 269-395 (443)
307 KOG4507|consensus 92.8 0.77 1.7E-05 46.2 9.5 68 103-170 645-712 (886)
308 PF13374 TPR_10: Tetratricopep 92.8 0.23 4.9E-06 31.0 4.1 28 135-162 3-30 (42)
309 KOG2396|consensus 92.7 0.39 8.4E-06 47.4 7.2 69 397-465 107-178 (568)
310 PF04781 DUF627: Protein of un 92.6 1.5 3.2E-05 34.3 8.9 102 12-162 2-106 (111)
311 TIGR02561 HrpB1_HrpK type III 92.6 0.6 1.3E-05 38.5 7.1 69 407-475 24-92 (153)
312 PF07721 TPR_4: Tetratricopept 92.5 0.21 4.6E-06 27.7 3.2 24 316-339 2-25 (26)
313 COG0790 FOG: TPR repeat, SEL1 92.4 9.9 0.00022 35.9 19.2 44 283-329 189-236 (292)
314 COG5159 RPN6 26S proteasome re 92.4 8.7 0.00019 35.5 14.7 201 104-309 7-234 (421)
315 PF07720 TPR_3: Tetratricopept 92.2 0.55 1.2E-05 28.5 4.9 29 103-131 4-34 (36)
316 PF13374 TPR_10: Tetratricopep 92.1 0.27 5.9E-06 30.6 3.9 28 103-130 5-32 (42)
317 PRK15180 Vi polysaccharide bio 92.1 1 2.2E-05 44.3 9.0 123 16-167 299-424 (831)
318 KOG3824|consensus 92.0 0.27 5.8E-06 45.4 4.9 68 403-470 126-193 (472)
319 PF10602 RPN7: 26S proteasome 91.9 1.5 3.3E-05 38.0 9.4 100 11-130 41-143 (177)
320 COG2912 Uncharacterized conser 91.8 1.2 2.5E-05 40.9 8.7 70 401-470 189-258 (269)
321 COG0790 FOG: TPR repeat, SEL1 91.7 6.8 0.00015 37.1 14.7 54 118-175 173-230 (292)
322 PRK13184 pknD serine/threonine 91.5 0.8 1.7E-05 50.1 8.6 68 408-476 534-601 (932)
323 KOG4814|consensus 91.4 2.1 4.6E-05 43.7 10.7 94 400-493 361-460 (872)
324 PF11207 DUF2989: Protein of u 91.1 10 0.00022 33.3 14.9 53 100-153 141-197 (203)
325 PF07721 TPR_4: Tetratricopept 91.0 0.31 6.7E-06 27.0 2.8 23 136-158 3-25 (26)
326 PF09986 DUF2225: Uncharacteri 91.0 1.2 2.5E-05 40.0 7.9 63 8-70 120-195 (214)
327 PF12862 Apc5: Anaphase-promot 90.8 0.85 1.8E-05 34.8 6.0 54 110-163 8-70 (94)
328 COG2912 Uncharacterized conser 90.7 1.1 2.4E-05 41.0 7.5 71 105-175 186-256 (269)
329 PF10579 Rapsyn_N: Rapsyn N-te 90.7 1.1 2.3E-05 32.5 5.9 56 9-64 9-67 (80)
330 PF10579 Rapsyn_N: Rapsyn N-te 90.4 2 4.4E-05 31.1 7.0 57 103-159 9-68 (80)
331 PF07720 TPR_3: Tetratricopept 90.2 0.92 2E-05 27.5 4.5 32 135-166 2-35 (36)
332 PF04781 DUF627: Protein of un 90.1 6.1 0.00013 30.9 10.0 30 106-135 2-31 (111)
333 PF10255 Paf67: RNA polymerase 89.8 3.8 8.3E-05 40.3 10.9 58 103-161 125-191 (404)
334 PRK15180 Vi polysaccharide bio 89.4 2.6 5.7E-05 41.5 9.2 49 293-341 301-349 (831)
335 PF04190 DUF410: Protein of un 89.3 16 0.00035 33.9 14.4 29 313-341 88-116 (260)
336 PF04053 Coatomer_WDAD: Coatom 88.9 9.1 0.0002 38.6 13.1 30 38-67 345-374 (443)
337 COG3629 DnrI DNA-binding trans 88.7 1.9 4E-05 40.1 7.5 58 103-160 156-213 (280)
338 TIGR03504 FimV_Cterm FimV C-te 88.3 0.95 2.1E-05 28.8 3.8 26 137-162 2-27 (44)
339 PF12968 DUF3856: Domain of Un 88.2 11 0.00025 29.8 10.5 56 106-161 15-82 (144)
340 PF08424 NRDE-2: NRDE-2, neces 87.9 19 0.00041 34.6 14.3 153 297-494 47-213 (321)
341 PF12968 DUF3856: Domain of Un 87.5 13 0.00028 29.6 12.1 100 12-127 15-127 (144)
342 KOG1914|consensus 87.4 36 0.00078 34.6 32.8 64 5-68 17-81 (656)
343 PF10516 SHNi-TPR: SHNi-TPR; 87.2 0.91 2E-05 27.9 3.1 29 7-35 2-30 (38)
344 PF12862 Apc5: Anaphase-promot 86.8 1 2.2E-05 34.4 4.0 53 405-457 10-71 (94)
345 PF11207 DUF2989: Protein of u 86.6 22 0.00047 31.3 12.4 20 217-236 58-77 (203)
346 PF15015 NYD-SP12_N: Spermatog 86.4 2.5 5.5E-05 40.9 7.0 85 105-189 181-283 (569)
347 TIGR03504 FimV_Cterm FimV C-te 86.0 1.4 3E-05 28.1 3.5 26 9-34 2-27 (44)
348 COG3629 DnrI DNA-binding trans 85.6 2.8 6.1E-05 39.0 6.8 57 10-66 157-213 (280)
349 PF09205 DUF1955: Domain of un 85.1 17 0.00038 29.5 10.0 51 406-456 99-149 (161)
350 smart00386 HAT HAT (Half-A-TPR 84.8 1.8 3.8E-05 24.9 3.6 30 20-49 1-30 (33)
351 KOG1258|consensus 84.5 52 0.0011 33.9 29.0 61 103-163 82-143 (577)
352 KOG2396|consensus 83.6 10 0.00022 38.0 9.8 59 111-169 116-175 (568)
353 PF10255 Paf67: RNA polymerase 83.5 1.3 2.7E-05 43.6 3.8 56 399-454 128-191 (404)
354 PRK11619 lytic murein transgly 83.2 69 0.0015 34.2 28.6 56 288-343 319-374 (644)
355 PF10516 SHNi-TPR: SHNi-TPR; 83.2 2.3 5E-05 26.1 3.5 28 135-162 2-29 (38)
356 COG5191 Uncharacterized conser 81.8 1.6 3.5E-05 40.5 3.5 60 406-465 120-180 (435)
357 KOG3783|consensus 81.8 49 0.0011 33.7 13.8 64 170-233 451-517 (546)
358 KOG2581|consensus 80.8 36 0.00078 33.3 12.1 53 407-459 223-279 (493)
359 smart00386 HAT HAT (Half-A-TPR 79.0 5.4 0.00012 22.7 4.2 27 114-140 1-27 (33)
360 COG5159 RPN6 26S proteasome re 78.9 40 0.00087 31.3 11.2 161 286-452 8-190 (421)
361 smart00299 CLH Clathrin heavy 78.8 35 0.00075 27.9 11.6 89 288-383 14-102 (140)
362 KOG1839|consensus 77.4 23 0.00049 39.9 11.0 131 103-233 935-1083(1236)
363 KOG1310|consensus 77.4 9.3 0.0002 38.4 7.3 55 114-168 425-479 (758)
364 COG3947 Response regulator con 76.0 9.6 0.00021 35.4 6.6 55 106-160 285-339 (361)
365 COG4455 ImpE Protein of avirul 75.9 14 0.00031 32.8 7.3 61 109-169 10-70 (273)
366 KOG1839|consensus 75.1 34 0.00074 38.6 11.5 134 11-162 937-1085(1236)
367 COG3947 Response regulator con 74.3 8.6 0.00019 35.6 5.8 54 12-65 285-338 (361)
368 cd02682 MIT_AAA_Arch MIT: doma 74.3 8.2 0.00018 27.9 4.6 23 444-466 30-52 (75)
369 PF12854 PPR_1: PPR repeat 72.9 7.6 0.00016 23.0 3.6 25 135-159 8-32 (34)
370 KOG2114|consensus 71.8 33 0.00071 36.8 9.9 54 288-342 341-395 (933)
371 PF01535 PPR: PPR repeat; Int 71.5 7.1 0.00015 21.9 3.3 25 138-162 4-28 (31)
372 PF13041 PPR_2: PPR repeat fam 71.3 19 0.0004 23.3 5.7 24 106-129 9-32 (50)
373 PF11817 Foie-gras_1: Foie gra 71.0 15 0.00033 33.8 7.0 54 104-157 182-241 (247)
374 KOG1310|consensus 70.4 22 0.00047 35.9 8.0 80 106-185 380-462 (758)
375 PF12854 PPR_1: PPR repeat 68.8 10 0.00023 22.4 3.6 22 319-340 11-32 (34)
376 PF14863 Alkyl_sulf_dimr: Alky 68.7 17 0.00037 30.0 6.0 47 103-149 73-119 (141)
377 PF13041 PPR_2: PPR repeat fam 68.6 9.9 0.00021 24.7 3.9 23 321-343 9-31 (50)
378 PF11817 Foie-gras_1: Foie gra 68.3 12 0.00027 34.4 5.8 26 41-66 179-204 (247)
379 COG1747 Uncharacterized N-term 68.2 1.4E+02 0.0031 30.3 13.4 135 6-142 99-247 (711)
380 PF09670 Cas_Cas02710: CRISPR- 67.7 63 0.0014 32.0 10.8 57 12-68 137-197 (379)
381 COG3014 Uncharacterized protei 67.5 1.2E+02 0.0026 29.1 11.9 110 219-342 40-152 (449)
382 PF09205 DUF1955: Domain of un 67.4 35 0.00077 27.8 7.2 61 103-163 88-149 (161)
383 PF14863 Alkyl_sulf_dimr: Alky 67.1 8.8 0.00019 31.7 4.0 52 8-59 72-123 (141)
384 COG5191 Uncharacterized conser 66.2 11 0.00025 35.2 4.9 26 405-430 154-179 (435)
385 cd02682 MIT_AAA_Arch MIT: doma 66.1 38 0.00083 24.5 6.5 26 103-128 9-34 (75)
386 COG3914 Spy Predicted O-linked 66.1 1E+02 0.0022 31.8 11.7 107 16-143 77-185 (620)
387 cd02680 MIT_calpain7_2 MIT: do 65.6 8.8 0.00019 27.7 3.3 17 439-455 18-34 (75)
388 KOG2063|consensus 64.4 2.3E+02 0.005 31.3 15.0 30 315-344 684-713 (877)
389 PF00244 14-3-3: 14-3-3 protei 64.0 54 0.0012 29.9 9.0 57 286-342 6-64 (236)
390 PF09670 Cas_Cas02710: CRISPR- 60.6 1.4E+02 0.0031 29.5 11.8 61 103-163 134-198 (379)
391 PF00244 14-3-3: 14-3-3 protei 60.3 1.4E+02 0.003 27.3 20.4 62 102-163 3-66 (236)
392 TIGR00756 PPR pentatricopeptid 59.9 19 0.00042 20.5 3.8 25 138-162 4-28 (35)
393 PF06957 COPI_C: Coatomer (COP 59.9 1.1E+02 0.0024 30.5 10.7 41 130-170 295-336 (422)
394 cd02684 MIT_2 MIT: domain cont 59.4 31 0.00068 24.9 5.3 11 410-420 4-14 (75)
395 PF10373 EST1_DNA_bind: Est1 D 59.1 33 0.00071 32.0 7.0 44 119-162 1-44 (278)
396 PF11846 DUF3366: Domain of un 58.0 23 0.00049 31.1 5.3 51 408-459 126-176 (193)
397 KOG2581|consensus 58.0 2E+02 0.0043 28.4 12.5 32 103-134 250-281 (493)
398 PF15015 NYD-SP12_N: Spermatog 57.2 51 0.0011 32.5 7.6 55 105-159 233-287 (569)
399 COG4259 Uncharacterized protei 57.0 45 0.00097 25.5 5.7 51 415-465 59-110 (121)
400 PF13812 PPR_3: Pentatricopept 54.8 31 0.00067 19.7 4.0 26 137-162 4-29 (34)
401 PF04212 MIT: MIT (microtubule 54.8 19 0.00042 25.3 3.6 13 407-419 19-31 (69)
402 PF04840 Vps16_C: Vps16, C-ter 54.7 2E+02 0.0044 27.6 21.0 86 286-386 213-298 (319)
403 PF09797 NatB_MDM20: N-acetylt 54.4 42 0.00091 33.0 7.1 49 19-67 196-244 (365)
404 KOG1497|consensus 52.9 2.1E+02 0.0046 27.3 12.4 90 283-372 105-206 (399)
405 cd02681 MIT_calpain7_1 MIT: do 51.3 21 0.00046 25.9 3.2 14 407-420 20-33 (76)
406 PF11846 DUF3366: Domain of un 50.7 66 0.0014 28.1 7.1 54 114-168 125-178 (193)
407 KOG1920|consensus 50.7 4.3E+02 0.0093 30.1 16.6 266 121-453 778-1052(1265)
408 cd02679 MIT_spastin MIT: domai 50.6 26 0.00057 25.6 3.6 34 407-455 3-36 (79)
409 COG4455 ImpE Protein of avirul 50.5 56 0.0012 29.2 6.2 56 13-68 8-63 (273)
410 KOG0276|consensus 49.1 2.2E+02 0.0048 29.7 10.8 45 111-160 648-692 (794)
411 KOG1463|consensus 48.7 2.6E+02 0.0056 27.0 20.6 56 10-65 8-73 (411)
412 PF04212 MIT: MIT (microtubule 48.6 36 0.00077 24.0 4.1 25 104-128 9-33 (69)
413 KOG2422|consensus 48.3 3.4E+02 0.0074 28.3 14.5 140 203-343 280-447 (665)
414 KOG0276|consensus 47.4 2.4E+02 0.0052 29.5 10.7 77 9-127 617-693 (794)
415 PF12583 TPPII_N: Tripeptidyl 47.2 90 0.002 25.3 6.3 33 109-141 85-117 (139)
416 COG3914 Spy Predicted O-linked 46.7 55 0.0012 33.7 6.4 52 412-463 121-178 (620)
417 KOG0546|consensus 45.3 13 0.00028 35.5 1.7 71 405-475 287-357 (372)
418 cd02683 MIT_1 MIT: domain cont 44.7 28 0.00061 25.3 3.1 15 448-462 34-48 (77)
419 KOG1463|consensus 44.3 3E+02 0.0066 26.5 23.7 88 286-373 133-232 (411)
420 PF07219 HemY_N: HemY protein 44.2 66 0.0014 25.1 5.4 44 11-54 64-107 (108)
421 PF08311 Mad3_BUB1_I: Mad3/BUB 43.9 67 0.0015 26.0 5.5 43 299-341 81-125 (126)
422 cd00280 TRFH Telomeric Repeat 43.8 86 0.0019 27.2 6.1 23 405-428 123-145 (200)
423 cd02681 MIT_calpain7_1 MIT: do 43.1 44 0.00096 24.2 3.8 26 103-128 9-34 (76)
424 KOG0530|consensus 43.1 2.8E+02 0.006 25.8 15.4 78 108-185 51-129 (318)
425 PF10373 EST1_DNA_bind: Est1 D 42.8 30 0.00065 32.2 3.9 43 25-67 1-43 (278)
426 cd02683 MIT_1 MIT: domain cont 42.6 47 0.001 24.1 4.0 24 104-127 10-33 (77)
427 PF08311 Mad3_BUB1_I: Mad3/BUB 42.4 1.7E+02 0.0037 23.6 7.7 43 118-160 81-125 (126)
428 KOG2280|consensus 41.8 4.8E+02 0.01 28.1 24.1 64 7-70 472-537 (829)
429 KOG0890|consensus 41.6 7.9E+02 0.017 30.6 29.0 154 45-231 1388-1542(2382)
430 TIGR02710 CRISPR-associated pr 40.2 3.8E+02 0.0082 26.5 12.0 54 12-65 136-196 (380)
431 KOG0687|consensus 39.8 3.5E+02 0.0076 26.0 11.4 60 103-162 107-172 (393)
432 KOG2062|consensus 39.7 5.2E+02 0.011 27.9 12.4 210 260-471 38-253 (929)
433 PF14689 SPOB_a: Sensor_kinase 38.8 1.3E+02 0.0028 20.7 6.2 27 103-129 26-52 (62)
434 COG5187 RPN7 26S proteasome re 38.1 3.5E+02 0.0076 25.5 10.6 61 104-164 159-222 (412)
435 COG5187 RPN7 26S proteasome re 37.8 2.6E+02 0.0056 26.3 8.6 27 207-233 115-141 (412)
436 KOG4151|consensus 37.7 42 0.00092 35.7 4.2 59 407-465 107-165 (748)
437 PF02184 HAT: HAT (Half-A-TPR) 37.6 44 0.00095 19.6 2.5 17 116-132 3-19 (32)
438 KOG2997|consensus 36.9 36 0.00078 32.1 3.1 25 405-429 31-55 (366)
439 PF09797 NatB_MDM20: N-acetylt 36.5 70 0.0015 31.4 5.5 47 114-160 197-243 (365)
440 PF01239 PPTA: Protein prenylt 36.2 65 0.0014 18.3 3.2 25 447-471 3-27 (31)
441 PRK11619 lytic murein transgly 36.2 5.8E+02 0.012 27.4 29.6 118 41-162 34-157 (644)
442 KOG0546|consensus 35.9 17 0.00037 34.8 0.9 67 103-169 278-344 (372)
443 PHA02537 M terminase endonucle 35.9 3E+02 0.0064 25.0 8.7 19 114-132 192-210 (230)
444 KOG0686|consensus 35.7 4.4E+02 0.0096 26.2 10.2 24 105-128 234-257 (466)
445 PF02064 MAS20: MAS20 protein 34.8 1.3E+02 0.0027 24.2 5.6 34 103-136 66-99 (121)
446 KOG0686|consensus 34.6 4.7E+02 0.01 26.0 10.7 98 208-342 151-256 (466)
447 COG5116 RPN2 26S proteasome re 34.4 1.4E+02 0.003 30.8 6.9 45 121-165 194-239 (926)
448 PF10037 MRP-S27: Mitochondria 33.4 5.2E+02 0.011 26.1 11.1 65 103-168 106-173 (429)
449 PF04190 DUF410: Protein of un 33.3 4E+02 0.0086 24.7 17.0 28 205-232 88-115 (260)
450 KOG3807|consensus 33.2 4.5E+02 0.0097 25.3 11.9 146 10-160 188-337 (556)
451 COG4259 Uncharacterized protei 33.2 2.3E+02 0.0049 21.9 6.8 48 122-169 59-107 (121)
452 smart00299 CLH Clathrin heavy 33.1 2.6E+02 0.0057 22.6 14.4 47 17-64 18-64 (140)
453 PF12753 Nro1: Nuclear pore co 32.8 78 0.0017 31.0 4.8 30 22-51 130-159 (404)
454 PF12739 TRAPPC-Trs85: ER-Golg 31.4 5.5E+02 0.012 25.7 12.6 46 103-148 211-262 (414)
455 PF09477 Type_III_YscG: Bacter 31.4 2.6E+02 0.0056 22.0 9.6 40 114-153 20-59 (116)
456 cd00280 TRFH Telomeric Repeat 31.4 1E+02 0.0022 26.7 4.7 36 105-141 116-151 (200)
457 KOG1076|consensus 31.3 6.9E+02 0.015 26.8 15.3 60 408-467 633-696 (843)
458 PF07219 HemY_N: HemY protein 31.2 1.8E+02 0.0039 22.7 5.9 27 103-129 62-88 (108)
459 cd02680 MIT_calpain7_2 MIT: do 31.1 87 0.0019 22.7 3.7 22 107-128 13-34 (75)
460 PF04840 Vps16_C: Vps16, C-ter 30.8 4.9E+02 0.011 25.0 11.2 51 99-158 236-286 (319)
461 PF10952 DUF2753: Protein of u 30.7 2.9E+02 0.0062 22.3 6.7 58 103-160 4-76 (140)
462 smart00671 SEL1 Sel1-like repe 29.2 1.2E+02 0.0026 17.4 4.1 26 136-161 3-32 (36)
463 smart00745 MIT Microtubule Int 28.2 1E+02 0.0022 22.1 3.9 22 106-127 14-35 (77)
464 PF04762 IKI3: IKI3 family; I 27.9 9.3E+02 0.02 27.3 15.7 51 294-344 791-843 (928)
465 COG5107 RNA14 Pre-mRNA 3'-end 27.3 6.7E+02 0.014 25.4 33.2 79 87-165 26-107 (660)
466 PLN00061 photosystem II protei 26.9 3.7E+02 0.008 22.3 7.6 76 410-499 61-136 (150)
467 PF10037 MRP-S27: Mitochondria 26.5 4.2E+02 0.0092 26.7 8.9 56 286-342 108-165 (429)
468 cd02678 MIT_VPS4 MIT: domain c 26.5 1.2E+02 0.0025 21.8 3.9 23 105-127 11-33 (75)
469 COG3014 Uncharacterized protei 26.3 6.1E+02 0.013 24.6 9.7 36 133-168 212-247 (449)
470 PF04348 LppC: LppC putative l 26.1 22 0.00049 36.9 0.0 55 104-158 28-85 (536)
471 KOG2168|consensus 25.8 9.2E+02 0.02 26.5 11.7 23 217-239 717-741 (835)
472 PF12753 Nro1: Nuclear pore co 25.7 1.2E+02 0.0026 29.8 4.7 33 22-56 334-366 (404)
473 PF14852 Fis1_TPR_N: Fis1 N-te 25.5 1.6E+02 0.0035 17.7 3.6 29 208-236 2-33 (35)
474 PF02064 MAS20: MAS20 protein 25.2 1E+02 0.0022 24.7 3.6 29 12-40 69-97 (121)
475 KOG4563|consensus 25.0 2E+02 0.0043 28.0 5.9 53 102-154 43-103 (400)
476 cd02656 MIT MIT: domain contai 24.6 1.3E+02 0.0028 21.5 3.9 22 106-127 12-33 (75)
477 PRK14063 exodeoxyribonuclease 24.6 2.8E+02 0.0061 20.1 7.5 68 408-502 6-74 (76)
478 cd02684 MIT_2 MIT: domain cont 24.5 1.4E+02 0.0031 21.5 4.0 22 106-127 12-33 (75)
479 PF09477 Type_III_YscG: Bacter 24.4 3.5E+02 0.0077 21.2 8.7 53 103-160 43-95 (116)
480 KOG2114|consensus 24.0 9.9E+02 0.022 26.3 28.8 53 15-68 343-396 (933)
481 COG1747 Uncharacterized N-term 23.8 8.2E+02 0.018 25.3 16.9 84 108-194 74-157 (711)
482 KOG0292|consensus 23.6 7E+02 0.015 27.6 10.0 145 3-168 643-787 (1202)
483 smart00777 Mad3_BUB1_I Mad3/BU 23.4 2.2E+02 0.0048 23.0 5.2 74 261-340 49-124 (125)
484 PF08238 Sel1: Sel1 repeat; I 23.4 1.7E+02 0.0036 17.1 4.1 12 150-161 24-35 (39)
485 KOG4563|consensus 23.1 1.3E+02 0.0028 29.1 4.3 55 9-63 44-106 (400)
486 KOG2066|consensus 23.1 1E+03 0.022 26.0 12.6 148 178-345 366-535 (846)
487 TIGR02498 type_III_ssaH type I 22.1 3.2E+02 0.007 19.9 5.3 60 7-66 7-66 (79)
488 KOG0529|consensus 21.8 3.9E+02 0.0085 26.5 7.3 52 414-465 96-149 (421)
489 cd02677 MIT_SNX15 MIT: domain 21.6 1.8E+02 0.0039 21.0 4.0 21 107-127 13-33 (75)
490 KOG0530|consensus 20.6 7E+02 0.015 23.3 21.0 62 291-352 122-184 (318)
491 TIGR03362 VI_chp_7 type VI sec 20.4 7.5E+02 0.016 23.5 11.9 144 18-162 111-278 (301)
492 PF04762 IKI3: IKI3 family; I 20.0 5.7E+02 0.012 28.9 9.3 112 209-341 814-927 (928)
No 1
>KOG3785|consensus
Probab=100.00 E-value=5.8e-51 Score=364.27 Aligned_cols=411 Identities=47% Similarity=0.803 Sum_probs=381.0
Q ss_pred ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000 5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG 84 (507)
Q Consensus 5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (507)
++++.+|+|+|++.+|||++|...|+-+...+..+.+++.++|.|++.+|.|.+|.....++++++...+++++++++++
T Consensus 56 E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 56 EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 44899999999999999999999999998877777799999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000 85 DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 164 (507)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 164 (507)
+++++.++.+.|++..++.+.||.+++..-.|++||++|++++..+|+...+..++|.||+++.-|+-+.+++.-.+...
T Consensus 136 dEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~ 215 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF 215 (557)
T ss_pred cHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHhhhhhhccChHHHHHhhHHHHH---------------------------hhCCCCCCChhHhHHHHHHHH
Q psy12000 165 PTSRIALNLKACNTYKLFTSRAAENQLKPILV---------------------------SILPPLIDVIPESRLNLVIYH 217 (507)
Q Consensus 165 p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~---------------------------~~~~~~~~~~~~~~~~l~~~~ 217 (507)
|+++.|.++++|.+++.-+...|+...+.+.+ ++++.+..+.|++++||+..|
T Consensus 216 pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYy 295 (557)
T KOG3785|consen 216 PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYY 295 (557)
T ss_pred CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeee
Confidence 99999999999999999888888877776532 567777788999999999999
Q ss_pred HhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCH
Q psy12000 218 LKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSF 297 (507)
Q Consensus 218 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 297 (507)
+++++.++|+.+++.++|..|.+++++|.+...+|+.....++++.|+++|+.++++..++|++++|+.+|.+++...+|
T Consensus 296 L~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qF 375 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQF 375 (557)
T ss_pred cccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcC
Q psy12000 298 KDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLG 377 (507)
Q Consensus 298 ~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 377 (507)
++.+.|++++.+...+++.+++|++.++...|.|.+|.+.|-++..++..+...|..||++||..+++++.||.++.+..
T Consensus 376 ddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 376 DDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCc
Q psy12000 378 DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD 425 (507)
Q Consensus 378 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~ 425 (507)
...+.+.+++.++. .-|..+.|==|-+.|..+...+|.
T Consensus 456 t~~e~fsLLqlIAn----------~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 456 TPSERFSLLQLIAN----------DCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred CchhHHHHHHHHHH----------HHHHHHHHHHHHHhhhHHHccCCC
Confidence 98888887776663 334445555555666666555543
No 2
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.4e-34 Score=312.45 Aligned_cols=471 Identities=15% Similarity=0.104 Sum_probs=331.1
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-chHHH---HHHhc
Q psy12000 8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT-RLSFH---LSHKL 83 (507)
Q Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~---~~~~~ 83 (507)
+...+|.++...|++++|++.|+++++.+|+++.++..+|.++...|++++|+..++++....+.. ..... .....
T Consensus 365 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 444 (899)
T TIGR02917 365 ALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRS 444 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhc
Confidence 344466666667777777777777766666666666667777777777777776666654322211 11111 12223
Q ss_pred CChhHHHHHHHHH-hh---cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12000 84 GDEKSLMEYHQKL-ED---SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAM 159 (507)
Q Consensus 84 ~~~~~~~~~~~~l-~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 159 (507)
++.+.+......+ .. .+..+..+|.++...|++++|+.+|++++..+|++..+++.+|.++...|++++|++.+++
T Consensus 445 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3333333322222 22 2334778899999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCC
Q psy12000 160 YLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPS 236 (507)
Q Consensus 160 ~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~ 236 (507)
++..+|++..++..++.++...|+.++|...++++.. ..|.....+..++.+|...|++++|+..++++ .|.
T Consensus 525 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 599 (899)
T TIGR02917 525 VLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE-----LNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD 599 (899)
T ss_pred HHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 9999999988888888888888999999888887642 23444566777888888888888888887765 355
Q ss_pred ChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCch
Q psy12000 237 VPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDS 316 (507)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~ 316 (507)
++..+...+.++...|+. ++|+..|+.+... .++...++..+|.++...|++++|+.+++++....|++..
T Consensus 600 ~~~~~~~l~~~~~~~~~~-------~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 670 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDL-------NKAVSSFKKLLAL--QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTE 670 (899)
T ss_pred CHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence 555566666666665544 3444444332211 1223344556788888888888888888888777777777
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHc--------------------
Q psy12000 317 FNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL-------------------- 376 (507)
Q Consensus 317 ~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------------------- 376 (507)
+++.++.++...|++++|+..++.+....+.+...+ ..++.++...|+++.|...+.+.
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 749 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGF-ELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLAS 749 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHH-HHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHC
Confidence 777778888888888888888877765444333222 23566666777777776655432
Q ss_pred CCcHHHHHHHHHhhh-c---HHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHH
Q psy12000 377 GDEKSLMEYHQKLED-S---LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAM 452 (507)
Q Consensus 377 ~~~~~~~~~~~~l~~-~---~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~ 452 (507)
++..++...+..+.. . +.....++.++...|++++|+..|+++++..|+++.++..+|+++.+.|+ .+|++.+++
T Consensus 750 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 222222222222211 1 22234566777778899999999999999999998888889999999998 889999999
Q ss_pred HHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000 453 YLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR 494 (507)
Q Consensus 453 ~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
+++..|+++..+..++.+++.+++.+.|...|++.++..|.+
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 870 (899)
T TIGR02917 829 ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870 (899)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 999999999999899999999889999999999999998875
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.6e-34 Score=313.19 Aligned_cols=482 Identities=17% Similarity=0.085 Sum_probs=309.8
Q ss_pred ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-chHHHHHH--
Q psy12000 5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT-RLSFHLSH-- 81 (507)
Q Consensus 5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~~~~-- 81 (507)
..+..+..|..++..|++++|+..|+++++.+|+++++++.+|.++...|++++|+..++++....+.. .....++.
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 100 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAY 100 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHH
Confidence 445677789999999999999999999999999999999999999999999999999999886543322 23333333
Q ss_pred -hcCChhHHHHHHHHHh--hc---HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHH
Q psy12000 82 -KLGDEKSLMEYHQKLE--DS---LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQE 155 (507)
Q Consensus 82 -~~~~~~~~~~~~~~l~--~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 155 (507)
..+..+.+........ .. ...+..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|++
T Consensus 101 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 180 (899)
T TIGR02917 101 LLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARA 180 (899)
T ss_pred HHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHH
Confidence 3333333333222211 11 12377889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc--
Q psy12000 156 QVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL-- 233 (507)
Q Consensus 156 ~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~-- 233 (507)
.+++++..+|.+..++..++.+++..|+++.|...++.++. ..|..+.++..++.++...|++++|...+..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-----~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 255 (899)
T TIGR02917 181 LIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIA-----LRPNNPAVLLALATILIEAGEFEEAEKHADALLK 255 (899)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999998888889999999999999988887642 34556677888888888888888888777654
Q ss_pred -CCCChHHHHHHHHHHHHhhhccCcHHHHHHH---------------------------HHHHHHhCCCcccccchhhhh
Q psy12000 234 -EPSVPQEYILKAVVQVTIGQDTGSREMVKAA---------------------------QALFQLVGSSQSECDTVPGRQ 285 (507)
Q Consensus 234 -~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A---------------------------~~~~~~~~~~~~~~~~~~~~~ 285 (507)
.|.++......+.++...|+...+...++++ +..++.+... .|+...++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~ 333 (899)
T TIGR02917 256 KAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKY--APNSHQARR 333 (899)
T ss_pred hCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHH
Confidence 4555555555666665555433332222222 2222211110 111122233
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchh
Q psy12000 286 CMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAK 365 (507)
Q Consensus 286 ~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 365 (507)
.++.++...|++++|+..++.+....|.++.++..+|.++...|++++|+..|++++...+.+...+. .++.++...++
T Consensus 334 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~ 412 (899)
T TIGR02917 334 LLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAART-QLGISKLSQGD 412 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHhCCC
Confidence 34555555555555555555554444444444555555555556666666665555544333222221 23444444555
Q ss_pred hhHHHHHHHHc---------------------CCcHHHHHHHHHhhhc----HHHHHHHHHHHHhHhhHHHHHHHHHHHh
Q psy12000 366 TRLSFHLSHKL---------------------GDEKSLMEYHQKLEDS----LEEQLCLASIHFLRCHYQEAIDIYKRIL 420 (507)
Q Consensus 366 ~~~A~~~~~~~---------------------~~~~~~~~~~~~l~~~----~~~~~~l~~~~~~~~~~~~Ai~~~~~~l 420 (507)
++.|...+.+. ++.+++......+... +.....++.++...|++++|+..|++++
T Consensus 413 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 492 (899)
T TIGR02917 413 PSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492 (899)
T ss_pred hHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 55444433221 1111222222221111 1122334555555666777777777776
Q ss_pred hcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000 421 LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR 494 (507)
Q Consensus 421 ~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
+.+|+++.....+|.++...|++++|+..++++++.+|++..+++.++.++...++.+.+...|++.++..|.+
T Consensus 493 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 566 (899)
T TIGR02917 493 SIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQE 566 (899)
T ss_pred hhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 66666666666666667777777777777777777777766666666666666666666666666666666654
No 4
>KOG4626|consensus
Probab=100.00 E-value=2.5e-35 Score=281.12 Aligned_cols=377 Identities=15% Similarity=0.048 Sum_probs=295.4
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccc----hHHHHHHh
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTR----LSFHLSHK 82 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~----~~~~~~~~ 82 (507)
+++-.+|+++-..|+++.|+..|+.++++.|+..++|.++|.++...|+.+.|..+|..+....+..- -+.++...
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKA 196 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHh
Confidence 45566888888999999999999999999999999999999999999999999999888765444221 12222233
Q ss_pred cCCh-hHHHHHHHHHhhcHHH---HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12000 83 LGDE-KSLMEYHQKLEDSLEE---QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVA 158 (507)
Q Consensus 83 ~~~~-~~~~~~~~~l~~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 158 (507)
.|.. ++...|.+.+...|.- +.+||.++..+|+.-.||..|++++.++|.+.++|++||.+|-.++.|+.|+..|.
T Consensus 197 ~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~ 276 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYL 276 (966)
T ss_pred hcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHH
Confidence 3332 3334455556544432 67888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCCh
Q psy12000 159 MYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVP 238 (507)
Q Consensus 159 ~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~ 238 (507)
+++...|++..++-.+|++++.+|..+-|+..+++.+ ...|..++++-|||..+-..|+.++|.+.+.+.....|
T Consensus 277 rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral-----~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 277 RALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL-----ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHH-----hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 8888888888888778888888888888888887664 45677778888888888888888888777754321111
Q ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHH
Q psy12000 239 QEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFN 318 (507)
Q Consensus 239 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~ 318 (507)
. ...+...||.+|..+|.+++|..+|+++.+..|....++
T Consensus 352 ~----------------------------------------hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~ 391 (966)
T KOG4626|consen 352 N----------------------------------------HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAH 391 (966)
T ss_pred c----------------------------------------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhh
Confidence 1 111234689999999999999999999999999988899
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHH
Q psy12000 319 FNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLC 398 (507)
Q Consensus 319 ~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 398 (507)
.|||.+|-++|++++|+.+|+.++...|.-...+ ..
T Consensus 392 nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~--------------------------------------------~N 427 (966)
T KOG4626|consen 392 NNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL--------------------------------------------SN 427 (966)
T ss_pred hhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH--------------------------------------------Hh
Confidence 9999999999999999999999987765321111 12
Q ss_pred HHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhh-hHHHhhhh
Q psy12000 399 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL-NLKACNTY 472 (507)
Q Consensus 399 l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~-~~~~~~~~ 472 (507)
+|.++-..|+...|+..|.+++..+|...+++.+||.+|.-.|+..+|+..|++++++.||.|.|. |++-+..+
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 344566678999999999999999999999999999999999999999999999999999999885 33334333
No 5
>KOG4626|consensus
Probab=100.00 E-value=1.7e-34 Score=275.44 Aligned_cols=436 Identities=14% Similarity=-0.014 Sum_probs=339.6
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChh
Q psy12000 8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEK 87 (507)
Q Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (507)
..+.+++..|+-|||++|.+....+-..+|.+.+....++.++++..+++.....-..+....+
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~---------------- 113 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP---------------- 113 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccc----------------
Confidence 3556777777777777777777777777777777777777777777666665543222211100
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12000 88 SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 167 (507)
Q Consensus 88 ~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 167 (507)
...+.+.++|.++...|++++|+..|+.+++..|++.+++.++|.++...|+.+.|...|..+++.+|+.
T Consensus 114 ----------q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l 183 (966)
T KOG4626|consen 114 ----------QGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDL 183 (966)
T ss_pred ----------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcch
Confidence 1123366799999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh---cCCCChHHHHHH
Q psy12000 168 RIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN---LEPSVPQEYILK 244 (507)
Q Consensus 168 ~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~---~~~~~~~~~~~~ 244 (507)
..+....+.++-.+|+..+|...+.+++. ..|...-+|.+||.++..+|+...|+..+.+ ++|..+++++..
T Consensus 184 ~ca~s~lgnLlka~Grl~ea~~cYlkAi~-----~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNL 258 (966)
T KOG4626|consen 184 YCARSDLGNLLKAEGRLEEAKACYLKAIE-----TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINL 258 (966)
T ss_pred hhhhcchhHHHHhhcccchhHHHHHHHHh-----hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhH
Confidence 88777777777778888888887777642 4456667899999999999999999998875 477778888888
Q ss_pred HHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHH
Q psy12000 245 AVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQA 324 (507)
Q Consensus 245 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~ 324 (507)
|.++...+....+...|.+|.. . .|....+.-.+|.+|+.+|..+-||..|+++++..|+.+.++.|+|.+
T Consensus 259 GnV~ke~~~~d~Avs~Y~rAl~------l---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanA 329 (966)
T KOG4626|consen 259 GNVYKEARIFDRAVSCYLRALN------L---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANA 329 (966)
T ss_pred HHHHHHHhcchHHHHHHHHHHh------c---CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHH
Confidence 8887776665555555555432 1 223333444688899999999999999999999999999999999999
Q ss_pred HHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHH
Q psy12000 325 KCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHF 404 (507)
Q Consensus 325 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 404 (507)
+-..|+..+|..+|.+++...+..... +..||..+--.++.+.|..+|.+..... .+.....-.++.++.
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~p~hada-m~NLgni~~E~~~~e~A~~ly~~al~v~---------p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLCPNHADA-MNNLGNIYREQGKIEEATRLYLKALEVF---------PEFAAAHNNLASIYK 399 (966)
T ss_pred HHhccchHHHHHHHHHHHHhCCccHHH-HHHHHHHHHHhccchHHHHHHHHHHhhC---------hhhhhhhhhHHHHHH
Confidence 999999999999999997554322111 1225555555666677766665532211 011112245677888
Q ss_pred hHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHH
Q psy12000 405 LRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQL 484 (507)
Q Consensus 405 ~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~ 484 (507)
++|++++|+..|+.++.+.|...+.++++|..|-.+|+.+.|+.+|.++|+++|..++|.+.+++++---++-..|+.-|
T Consensus 400 qqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred hcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998878888888889
Q ss_pred HHHHHhCCC
Q psy12000 485 KPILVSAGP 493 (507)
Q Consensus 485 ~~~~~~~~~ 493 (507)
+.-+-..|.
T Consensus 480 ~~aLklkPD 488 (966)
T KOG4626|consen 480 RTALKLKPD 488 (966)
T ss_pred HHHHccCCC
Confidence 988888774
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.3e-32 Score=301.66 Aligned_cols=463 Identities=14% Similarity=0.022 Sum_probs=342.9
Q ss_pred hhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc----chHHHHHHh-----------
Q psy12000 18 HLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT----RLSFHLSHK----------- 82 (507)
Q Consensus 18 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~----~~~~~~~~~----------- 82 (507)
..|++++|++.|+++++.+|.++.++..+|.+++..|++++|+..++++...+... ..++.....
T Consensus 159 ~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l 238 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAAL 238 (1157)
T ss_pred CCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHH
Confidence 45888899999999999999999999999999999999999999998875432211 011111000
Q ss_pred ------cCChhHHHHHHHHHhh------cHHH-HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC
Q psy12000 83 ------LGDEKSLMEYHQKLED------SLEE-QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY 149 (507)
Q Consensus 83 ------~~~~~~~~~~~~~l~~------~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 149 (507)
+........+...+.. .|.. ...+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|+
T Consensus 239 ~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~ 318 (1157)
T PRK11447 239 QKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGD 318 (1157)
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 1011111111122211 1111 23568899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHH--------------HHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHH
Q psy12000 150 YDVSQEQVAMYLAQKPTSRIA--------------LNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVI 215 (507)
Q Consensus 150 ~~~A~~~~~~~l~~~p~~~~a--------------~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 215 (507)
+++|+..|+++++.+|++... ....+.++...|++++|+..+++++. ..|..+.++..+|.
T Consensus 319 ~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~-----~~P~~~~a~~~Lg~ 393 (1157)
T PRK11447 319 RARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ-----VDNTDSYAVLGLGD 393 (1157)
T ss_pred HHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHH
Confidence 999999999999999987531 12235667788999999999998753 35666788999999
Q ss_pred HHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCccc-cc------chhhhh
Q psy12000 216 YHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSE-CD------TVPGRQ 285 (507)
Q Consensus 216 ~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~------~~~~~~ 285 (507)
++..+|++++|+..++++ .|.++..+...+.++.. ...++|+.+++.+...... .. ......
T Consensus 394 ~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~--------~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 465 (1157)
T PRK11447 394 VAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQ--------QSPEKALAFIASLSASQRRSIDDIERSLQNDRLA 465 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHH
Confidence 999999999999999875 45555444333333321 1346666666544321100 00 011233
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchh
Q psy12000 286 CMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAK 365 (507)
Q Consensus 286 ~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 365 (507)
.+|.++...|++++|+..++++....|+++.+++.+|.+|..+|++++|+..|++++...|.+...+.. ++..+...++
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a-~al~l~~~~~ 544 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYA-YGLYLSGSDR 544 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHhCCC
Confidence 578899999999999999999999999999899999999999999999999999998655544332211 2223344555
Q ss_pred hhHHHHHHHHcC-------------------------------CcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHH
Q psy12000 366 TRLSFHLSHKLG-------------------------------DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAID 414 (507)
Q Consensus 366 ~~~A~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~ 414 (507)
+++|...+.++. +.+++...++.....++....++.++...|++++|+.
T Consensus 545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~ 624 (1157)
T PRK11447 545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARA 624 (1157)
T ss_pred HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 666655544432 2223333333222223344667888888999999999
Q ss_pred HHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000 415 IYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR 494 (507)
Q Consensus 415 ~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
.|++++..+|+++.+...+|.+|...|++++|+..++.+++..|+++.+...++.++..+++.+.|.+.|++++...|..
T Consensus 625 ~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 625 AYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987655
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=5.6e-30 Score=268.79 Aligned_cols=375 Identities=12% Similarity=0.034 Sum_probs=228.1
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-chHHHHHHhcCChh
Q psy12000 9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT-RLSFHLSHKLGDEK 87 (507)
Q Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 87 (507)
....|..++..|+|++|+..|+++++..|+ +..+.++|.||..+|++++|+..+.++....+.. .++
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~----------- 197 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKAL----------- 197 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHH-----------
Confidence 345799999999999999999999999996 6789999999999999999999999987644433 233
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC------------------------------Cchh---
Q psy12000 88 SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH------------------------------KDLL--- 134 (507)
Q Consensus 88 ~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------------------------------p~~~--- 134 (507)
+.+|.+|...|++++|+..|..+...+ |.+.
T Consensus 198 ----------------~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~ 261 (615)
T TIGR00990 198 ----------------NRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSV 261 (615)
T ss_pred ----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCH
Confidence 333444444444444444333332222 1111
Q ss_pred ------------------------------HHHHHHHHHHH---hcCCHHHHHHHHHHHHhc---CCCcHHHHHHHhhhh
Q psy12000 135 ------------------------------ALNVYGAMCYY---KLDYYDVSQEQVAMYLAQ---KPTSRIALNLKACNT 178 (507)
Q Consensus 135 ------------------------------~~~~~la~~~~---~~g~~~~A~~~~~~~l~~---~p~~~~a~~~~a~~~ 178 (507)
..+..++..+. ..++|++|++.|++++.. +|+...+++.++.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~ 341 (615)
T TIGR00990 262 TFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFK 341 (615)
T ss_pred HHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Confidence 11111111111 123455555555555543 244444555555555
Q ss_pred hhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhcc
Q psy12000 179 YKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDT 255 (507)
Q Consensus 179 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~ 255 (507)
+..|++++|+..+++++ ...|..+.++..+|.++...|++++|+..+.+. .|.++..+..+|.++...|+..
T Consensus 342 ~~~g~~~eA~~~~~kal-----~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 416 (615)
T TIGR00990 342 CLKGKHLEALADLSKSI-----ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA 416 (615)
T ss_pred HHcCCHHHHHHHHHHHH-----HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 55555555555555443 123344445555555555555555555555432 4444444444555554444433
Q ss_pred CcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHH
Q psy12000 256 GSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAE 335 (507)
Q Consensus 256 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 335 (507)
.+...+++++.. .|+...++..+|.++..+|++++|+..++++....|+++.++..+|.++..+|++++|+
T Consensus 417 ~A~~~~~kal~l---------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 417 QAGKDYQKSIDL---------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHHHHHHHHHHc---------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 333333332221 22333444556777777777777777777776666766666666777777777777777
Q ss_pred HHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHh-HhhHHHHHH
Q psy12000 336 EMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFL-RCHYQEAID 414 (507)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~-~~~~~~Ai~ 414 (507)
..|++++...+.....+... ..+ ...+...+. .|++++|+.
T Consensus 488 ~~~~~Al~l~p~~~~~~~~~---------------------------~~l-----------~~~a~~~~~~~~~~~eA~~ 529 (615)
T TIGR00990 488 EKFDTAIELEKETKPMYMNV---------------------------LPL-----------INKALALFQWKQDFIEAEN 529 (615)
T ss_pred HHHHHHHhcCCccccccccH---------------------------HHH-----------HHHHHHHHHHhhhHHHHHH
Confidence 77777664443221111000 000 011122232 489999999
Q ss_pred HHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhh
Q psy12000 415 IYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA 463 (507)
Q Consensus 415 ~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a 463 (507)
.+++++..+|++..++..+|.++..+|++++|+..|++++++.+.....
T Consensus 530 ~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 530 LCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999989999999999999999999999999998876653
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.9e-29 Score=281.19 Aligned_cols=408 Identities=13% Similarity=0.017 Sum_probs=266.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHH
Q psy12000 11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLM 90 (507)
Q Consensus 11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (507)
..|.++...|++++|+..|+++++.+|++++++..+|.++..+|++++|+..|+++....+..... ...
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~----------~~~- 342 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR----------DKW- 342 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch----------hHH-
Confidence 458999999999999999999999999999999999999999999999999999886533321100 000
Q ss_pred HHHHHHhhc-HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 91 EYHQKLEDS-LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 91 ~~~~~l~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
...+... ......+|.++...|++++|+..|++++..+|++..+++.+|.++...|++++|++.|+++++.+|++..
T Consensus 343 --~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~ 420 (1157)
T PRK11447 343 --ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN 420 (1157)
T ss_pred --HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 0000000 0002234555566666666666666666666666666666666666666666666666666666666554
Q ss_pred HHHH------------------------------------------HhhhhhhccChHHHHHhhHHHHHhhCCCCCCChh
Q psy12000 170 ALNL------------------------------------------KACNTYKLFTSRAAENQLKPILVSILPPLIDVIP 207 (507)
Q Consensus 170 a~~~------------------------------------------~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~ 207 (507)
++.. .+.++...|++++|+..+++++ ...|..+
T Consensus 421 a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al-----~~~P~~~ 495 (1157)
T PRK11447 421 AVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL-----ALDPGSV 495 (1157)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH-----HhCCCCH
Confidence 4332 3334445667777777776654 2445667
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccc--h-
Q psy12000 208 ESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDT--V- 281 (507)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~- 281 (507)
.+++.+|.+|...|++++|+..++++ .|.++..+...+..+...+ ..++|+..++.+......... +
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~-------~~~~Al~~l~~l~~~~~~~~~~~l~ 568 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSD-------RDRAALAHLNTLPRAQWNSNIQELA 568 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCC-------CHHHHHHHHHhCCchhcChhHHHHH
Confidence 78888888888888888888888764 5666665555554443333 334555555544321110000 0
Q ss_pred -----hhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhh
Q psy12000 282 -----PGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHL 356 (507)
Q Consensus 282 -----~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 356 (507)
.....++.++...|++++|+.+++ ..|+++...+.+|.++.+.|++++|+..|++++..+|.+....
T Consensus 569 ~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~---- 640 (1157)
T PRK11447 569 QRLQSDQVLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADAR---- 640 (1157)
T ss_pred HHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH----
Confidence 011246788999999999999877 3577777888999999999999999999999987665443222
Q ss_pred cccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhh
Q psy12000 357 TKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMC 436 (507)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~ 436 (507)
..++.++...|++++|+..|++++...|+++.+...+|.+
T Consensus 641 ----------------------------------------~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 641 ----------------------------------------LGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALA 680 (1157)
T ss_pred ----------------------------------------HHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 2223344455667777777777666666666666666777
Q ss_pred ccccccchhHHHHHHHHHhcCCCch------hhhhHHHhhhhhcCChHHHHHHHHHHHHhC
Q psy12000 437 YYKLDYYDVSQEQVAMYLAQKPTSR------IALNLKACNTYKLFTSRAAENQLKPILVSA 491 (507)
Q Consensus 437 y~~~g~~~~A~~~~~~~l~~~P~~~------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (507)
+..+|++++|+..++.++...|+++ .++...+.++...++...|.+.|+..+...
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 7777777777777777766665443 233345666666666666666666666544
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=1.3e-27 Score=250.90 Aligned_cols=407 Identities=12% Similarity=0.011 Sum_probs=286.5
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHH
Q psy12000 42 TEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAID 121 (507)
Q Consensus 42 ~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~ 121 (507)
.+..+|..++..|+|++|+..|++++...+. +..+.++|.+|...|++++|+.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~---------------------------~~~~~n~a~~~~~l~~~~~Ai~ 181 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPD---------------------------PVYYSNRAACHNALGDWEKVVE 181 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---------------------------hHHHHHHHHHHHHhCCHHHHHH
Confidence 4667899999999999999999987643321 1125688999999999999999
Q ss_pred HHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhH---------
Q psy12000 122 IYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLK--------- 192 (507)
Q Consensus 122 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~--------- 192 (507)
.+++++..+|++..+++.+|.+|..+|++++|+..|..++..++.............+.......+...++
T Consensus 182 ~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~ 261 (615)
T TIGR00990 182 DTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSV 261 (615)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCH
Confidence 99999999999999999999999999999999999988776665443211100000000000000110000
Q ss_pred ----HHHHh--------hCC---CCCCChhHhHHHHHHHHH---hhccHHHHHHHHHhcC------CCChHHHHHHHHHH
Q psy12000 193 ----PILVS--------ILP---PLIDVIPESRLNLVIYHL---KQEEHQEAFDLIKNLE------PSVPQEYILKAVVQ 248 (507)
Q Consensus 193 ----~~~~~--------~~~---~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~l~~~~------~~~~~~~~~~~~~~ 248 (507)
.+... .+. ...+........++..+. ..++|++|+..+++.. |.....+..+|.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~ 341 (615)
T TIGR00990 262 TFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFK 341 (615)
T ss_pred HHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Confidence 00000 000 011111123344444332 2479999999887653 33333455667777
Q ss_pred HHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhh
Q psy12000 249 VTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCAL 328 (507)
Q Consensus 249 ~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~ 328 (507)
...|+...+...++++++ . .|+...++..+|.++...|++++|+.+++++...+|+++.+++++|.++...
T Consensus 342 ~~~g~~~eA~~~~~kal~-------l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 412 (615)
T TIGR00990 342 CLKGKHLEALADLSKSIE-------L--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIK 412 (615)
T ss_pred HHcCCHHHHHHHHHHHHH-------c--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 766665544444444433 2 2334455677899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhh
Q psy12000 329 GQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCH 408 (507)
Q Consensus 329 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 408 (507)
|++++|+.+|++++..+|.+...+. .++.++...|+++.|...+.+.... .+..+.....+|.++...|+
T Consensus 413 g~~~~A~~~~~kal~l~P~~~~~~~-~la~~~~~~g~~~eA~~~~~~al~~---------~P~~~~~~~~lg~~~~~~g~ 482 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDLDPDFIFSHI-QLGVTQYKEGSIASSMATFRRCKKN---------FPEAPDVYNYYGELLLDQNK 482 (615)
T ss_pred CCHHHHHHHHHHHHHcCccCHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHh---------CCCChHHHHHHHHHHHHccC
Confidence 9999999999999887766555443 3566777778888877666543210 11112223456778888899
Q ss_pred HHHHHHHHHHHhhcCCchhhhH------HHHH-hhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHH
Q psy12000 409 YQEAIDIYKRILLDHKDLLALN------VYGA-MCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAE 481 (507)
Q Consensus 409 ~~~Ai~~~~~~l~~~p~~~~~~------~~la-~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~ 481 (507)
+++|+..|++++...|+....+ ...+ .++...|++++|+..++++++++|++..++..+|.+++.+++.+.|.
T Consensus 483 ~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 9999999999999988753322 1222 33445799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCC
Q psy12000 482 NQLKPILVSAGPR 494 (507)
Q Consensus 482 ~~~~~~~~~~~~~ 494 (507)
..|+..++..+..
T Consensus 563 ~~~e~A~~l~~~~ 575 (615)
T TIGR00990 563 KLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHhccH
Confidence 9999999888754
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=8.7e-27 Score=249.30 Aligned_cols=476 Identities=9% Similarity=-0.061 Sum_probs=299.3
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHH-HHHhcCChh
Q psy12000 9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFH-LSHKLGDEK 87 (507)
Q Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 87 (507)
.+..|..+...|++++|+..|+++++.+|+++.+++.++.+|+.+|++++|+..++++.+.++.+..+.. ++......+
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~k 126 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVK 126 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccChh
Confidence 3446777888899999999999999999999999999999999999999999999999876655431111 222222233
Q ss_pred HHHHHHHHHhhcH---HHHHHH----------------------------------------HHHHHHhhcHHHHHHHHH
Q psy12000 88 SLMEYHQKLEDSL---EEQLCL----------------------------------------ASIHFLRCHYQEAIDIYK 124 (507)
Q Consensus 88 ~~~~~~~~l~~~~---~~~~~l----------------------------------------a~~~~~~g~~~~A~~~~~ 124 (507)
++..+.+.+...| +.++.+ +.+|..+|++++|+..++
T Consensus 127 A~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 127 SVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 3333333333222 123333 445555555555555555
Q ss_pred HHHHhCCchhHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHH-------
Q psy12000 125 RILLDHKDLLALNVYGAMCYYK-LDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILV------- 196 (507)
Q Consensus 125 ~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~------- 196 (507)
++++..|.+......++.+|.. +++ ++|..+++..++ +++.+...++..+.+.|+.+.|...+.++..
T Consensus 207 ~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~ 282 (987)
T PRK09782 207 EARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ 282 (987)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence 5555555555555555555554 344 444444333222 2333333444455556666666655544310
Q ss_pred ---------------------------------------------------hh---------------------------
Q psy12000 197 ---------------------------------------------------SI--------------------------- 198 (507)
Q Consensus 197 ---------------------------------------------------~~--------------------------- 198 (507)
++
T Consensus 283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 362 (987)
T PRK09782 283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEAL 362 (987)
T ss_pred cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHH
Confidence 00
Q ss_pred -----CCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHH------HHHHHHHHhhhccCc----------
Q psy12000 199 -----LPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYI------LKAVVQVTIGQDTGS---------- 257 (507)
Q Consensus 199 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~------~~~~~~~~~g~~~~~---------- 257 (507)
.....|..+++...++...+.+|++++|...+....+...+... ..+.++...+.....
T Consensus 363 ~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~ 442 (987)
T PRK09782 363 RLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL 442 (987)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc
Confidence 00011233455566677778888888888888776443222111 112222222110000
Q ss_pred --------HHHHHH---HHHHHHHhCCCccccc--chhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHH
Q psy12000 258 --------REMVKA---AQALFQLVGSSQSECD--TVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQA 324 (507)
Q Consensus 258 --------~~~~~~---A~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~ 324 (507)
.+.+.. +...+.... +..|+ ...++..+|.++.. ++..+|+..+.++....|++. ....+|.+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~al--~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~a 518 (987)
T PRK09782 443 PLAEQRQWQSQLPGIADNCPAIVRLL--GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQ 518 (987)
T ss_pred ccchhHHHHhhhhhhhhhHHHHHHhc--ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHH
Confidence 001111 111111111 11122 33455678888876 788888887777777777653 34556777
Q ss_pred HHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHH------------------c---CCcHHHH
Q psy12000 325 KCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHK------------------L---GDEKSLM 383 (507)
Q Consensus 325 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~------------------~---~~~~~~~ 383 (507)
+...|++++|+..|+++....+.+...+ .++.++...|+.+.|...+.+ . ++.+++.
T Consensus 519 l~~~Gr~eeAi~~~rka~~~~p~~~a~~--~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLHDMSNEDLL--AAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHHCCCHHHHHHHHHHHhccCCCcHHHH--HHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHH
Confidence 7788888888888888765433222211 234444555666665543322 2 4444444
Q ss_pred HHHHHhhhc---HHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCc
Q psy12000 384 EYHQKLEDS---LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 460 (507)
Q Consensus 384 ~~~~~l~~~---~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~ 460 (507)
..+...... .+....++.++...|++++|+..|++++..+|+++.++.++|.++..+|++++|+..++++++.+|++
T Consensus 597 ~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 597 NDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 444333221 22335577788888999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000 461 RIALNLKACNTYKLFTSRAAENQLKPILVSAGPR 494 (507)
Q Consensus 461 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
+.+++.+|.+++.+++.+.|++.|++.++..|..
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999987
No 11
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=7.3e-28 Score=257.32 Aligned_cols=417 Identities=12% Similarity=0.029 Sum_probs=302.7
Q ss_pred HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHH
Q psy12000 13 GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEY 92 (507)
Q Consensus 13 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (507)
-.+....|++++|++.|.++...+|....++..+|.++...|++++|+..++++....+.+
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~------------------- 82 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN------------------- 82 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------------
Confidence 3467788999999999999998889998899999999999999999999999875443322
Q ss_pred HHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q psy12000 93 HQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN 172 (507)
Q Consensus 93 ~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~ 172 (507)
+.....+|.++...|++++|+..+++++..+|+++. +..+|.++...|++++|+..+++++..+|+++.+..
T Consensus 83 -------~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~ 154 (765)
T PRK10049 83 -------DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPT 154 (765)
T ss_pred -------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 122557888999999999999999999999999999 999999999999999999999999999999999888
Q ss_pred HHhhhhhhccChHHHHHhhHHHHHhhCCCCCCCh-----hHhHHHHHHHH-----HhhccH---HHHHHHHHhcC---CC
Q psy12000 173 LKACNTYKLFTSRAAENQLKPILVSILPPLIDVI-----PESRLNLVIYH-----LKQEEH---QEAFDLIKNLE---PS 236 (507)
Q Consensus 173 ~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~-----~~~~~~---~~A~~~l~~~~---~~ 236 (507)
.++.++...+..+.|...++.+. . .|.. ......++.++ ...+++ ++|+..++.+. +.
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~-----~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~ 228 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDAN-----L-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHD 228 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCC-----C-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhccc
Confidence 88888888888888888776531 1 1110 01111222222 223445 67777666543 44
Q ss_pred ChHHHH--HHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcc-cccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCC
Q psy12000 237 VPQEYI--LKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQS-ECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTS 313 (507)
Q Consensus 237 ~~~~~~--~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~ 313 (507)
+|.... ..+.+. .++... ..+.+++|+..|+.+..... .|+ .+..++|.++..+|++++|+..|+++...+|.
T Consensus 229 ~p~~~~~~~~a~~d-~l~~Ll-~~g~~~eA~~~~~~ll~~~~~~P~--~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 229 NPDATADYQRARID-RLGALL-ARDRYKDVISEYQRLKAEGQIIPP--WAQRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred CCccchHHHHHHHH-HHHHHH-HhhhHHHHHHHHHHhhccCCCCCH--HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 443221 111110 011111 12456677777776544321 122 23345788888899999999888888766665
Q ss_pred C----chHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHh
Q psy12000 314 D----DSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKL 389 (507)
Q Consensus 314 ~----~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 389 (507)
+ ......++.++..+|++++|++.++++....|.....+ +... . .+.+...
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~----~~~~--------------~-~p~~~~~------ 359 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLY----GSPT--------------S-IPNDDWL------ 359 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeec----CCCC--------------C-CCCchHH------
Confidence 4 23445577788888999999999888875544321111 0000 0 0000000
Q ss_pred hhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHh
Q psy12000 390 EDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC 469 (507)
Q Consensus 390 ~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~ 469 (507)
.....++.++...|++++|+..+++++...|+++.+...+|.++...|++++|+..++++++++|+++.+...++.
T Consensus 360 ----~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~ 435 (765)
T PRK10049 360 ----QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAW 435 (765)
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 0112334566667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCChHHHHHHHHHHHHhCCCCc
Q psy12000 470 NTYKLFTSRAAENQLKPILVSAGPRV 495 (507)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (507)
+...+++.+.|++.++.+++..|++.
T Consensus 436 ~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999883
No 12
>KOG2002|consensus
Probab=99.97 E-value=5.8e-27 Score=235.32 Aligned_cols=488 Identities=16% Similarity=0.123 Sum_probs=344.4
Q ss_pred CCccchhhHHH--HHHHhhcCHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-chHHH
Q psy12000 3 NADSLTDAWLG--YCHFHLGQYKQALGIYETLRHLPNPP-EDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT-RLSFH 78 (507)
Q Consensus 3 ~~~~~~~~~lg--~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~ 78 (507)
.+|+++...+| .+.|..|||..|+.+|++++.++|.. +++...+|.|..++|+.+.|+..+.++...+|.. .++..
T Consensus 159 ~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~ 238 (1018)
T KOG2002|consen 159 QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVA 238 (1018)
T ss_pred hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHH
Confidence 56777777765 56778899999999999999999975 4788999999999999999999999886644432 12211
Q ss_pred HH---HhcCChhHH----------------------------------HH----HHHHHhhc------HHHHHHHHHHHH
Q psy12000 79 LS---HKLGDEKSL----------------------------------ME----YHQKLEDS------LEEQLCLASIHF 111 (507)
Q Consensus 79 ~~---~~~~~~~~~----------------------------------~~----~~~~l~~~------~~~~~~la~~~~ 111 (507)
++ ....+.+.. .. +.-.+... .+.++.+|..|.
T Consensus 239 L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 239 LGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 11 111111000 00 01111110 133889999999
Q ss_pred HhhcHHHHHHHHHHHHHhCCch-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc----ChHH
Q psy12000 112 LRCHYQEAIDIYKRILLDHKDL-LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF----TSRA 186 (507)
Q Consensus 112 ~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~----~~~~ 186 (507)
.+|+|++|-.+|.+++..+|++ .-.++.||++|+..|+++.|...|+++++..|++...+.++|+++...+ ..+.
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 9999999999999999999998 7778899999999999999999999999999999999999999988775 2356
Q ss_pred HHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhc------cHHHHHHHHHhcCCCChHH-HHHHHHHHHHhhhccCcHH
Q psy12000 187 AENQLKPILVSILPPLIDVIPESRLNLVIYHLKQE------EHQEAFDLIKNLEPSVPQE-YILKAVVQVTIGQDTGSRE 259 (507)
Q Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~A~~~l~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~ 259 (507)
|...+.+... ..+...++|+.++.++..+. -|..|+..+.......|.. ....|..++.+|....+.+
T Consensus 399 a~~~l~K~~~-----~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~ 473 (1018)
T KOG2002|consen 399 ASNVLGKVLE-----QTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALE 473 (1018)
T ss_pred HHHHHHHHHh-----cccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence 6666665532 33667789999998877643 3455665554433334443 4457888899998888888
Q ss_pred HHHHHHHHHHHhCCCccc-ccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHH
Q psy12000 260 MVKAAQALFQLVGSSQSE-CDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMF 338 (507)
Q Consensus 260 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 338 (507)
+++.|........+.+.. .-.+...+++|.++...++++.|-+.|+.+.+..|.-...+..+|......+...+|...+
T Consensus 474 ~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 474 HFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred HHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 888887754322222211 1123346789999999999999999999999999988777888886667789999999999
Q ss_pred HhhcccCCCchhhhhhhhcccCccchhhhHHHH----HHHHcCCc-------------------------------HHHH
Q psy12000 339 LLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFH----LSHKLGDE-------------------------------KSLM 383 (507)
Q Consensus 339 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~~~~~-------------------------------~~~~ 383 (507)
+.+++.+..+..+ ...+|.++.++.++..|-+ +..+.... .+++
T Consensus 554 k~~l~~d~~np~a-rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAl 632 (1018)
T KOG2002|consen 554 KDALNIDSSNPNA-RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKAL 632 (1018)
T ss_pred HHHHhcccCCcHH-HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHH
Confidence 9998655433222 1234555555555544422 11111110 0122
Q ss_pred HHHHHhhhc-HHHHH---HHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCC-
Q psy12000 384 EYHQKLEDS-LEEQL---CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP- 458 (507)
Q Consensus 384 ~~~~~l~~~-~~~~~---~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P- 458 (507)
..+.++-.. |.+.. ..|.+.-..|++.+|+++|.++.+.-.++++++.++|.||..+|+|-.|+++|+.+++++-
T Consensus 633 q~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~ 712 (1018)
T KOG2002|consen 633 QLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK 712 (1018)
T ss_pred HHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 222221111 11111 1344555567888888888888877777778888899999999999999999999988753
Q ss_pred -CchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCcc
Q psy12000 459 -TSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRVR 496 (507)
Q Consensus 459 -~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (507)
+++..++.+|.++|+-+..+.+...+...+...|.+..
T Consensus 713 ~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 713 KNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 57788888999999877777777777888888887743
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=2.4e-27 Score=248.24 Aligned_cols=335 Identities=11% Similarity=0.005 Sum_probs=254.0
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHH
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLME 91 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (507)
.+......|++++|...++.++...|.++++++.+|.+....|++++|+..++++....|..
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~------------------ 109 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ------------------ 109 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC------------------
Confidence 45667788999999999999999999999999999999999999999999888875433322
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12000 92 YHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL 171 (507)
Q Consensus 92 ~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~ 171 (507)
+..+..+|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..+++++..+|+++.++
T Consensus 110 --------~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~ 181 (656)
T PRK15174 110 --------PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMI 181 (656)
T ss_pred --------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHH
Confidence 122567888889999999999999999999999999999999999999999999999998888888888765
Q ss_pred HHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q psy12000 172 NLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTI 251 (507)
Q Consensus 172 ~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 251 (507)
...+ .++..|++++|+..++.+.+ ..+.........++.++...|++++|+..+.+....+
T Consensus 182 ~~~~-~l~~~g~~~eA~~~~~~~l~----~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-------------- 242 (656)
T PRK15174 182 ATCL-SFLNKSRLPEDHDLARALLP----FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-------------- 242 (656)
T ss_pred HHHH-HHHHcCCHHHHHHHHHHHHh----cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 4433 35666777777776665432 1111112233444566666777777766665432111
Q ss_pred hhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHH----HHHHHHHhhhhcCCCchHHHHHHHHHHh
Q psy12000 252 GQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKD----VILYLSSIKSYYTSDDSFNFNFAQAKCA 327 (507)
Q Consensus 252 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~----Ai~~~~~~~~~~~~~~~~~~~lg~~~~~ 327 (507)
|+...++..+|.++...|++++ |+..++++....|++..++.++|.++..
T Consensus 243 --------------------------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 243 --------------------------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR 296 (656)
T ss_pred --------------------------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 1222334467888888888885 7888999888888888888889999999
Q ss_pred hCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHh
Q psy12000 328 LGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRC 407 (507)
Q Consensus 328 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 407 (507)
+|++++|+..+++++...|.+...+ ..++.++...|
T Consensus 297 ~g~~~eA~~~l~~al~l~P~~~~a~--------------------------------------------~~La~~l~~~G 332 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATHPDLPYVR--------------------------------------------AMYARALRQVG 332 (656)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH--------------------------------------------HHHHHHHHHCC
Confidence 9999999999998876554332111 12344566678
Q ss_pred hHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCch
Q psy12000 408 HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 461 (507)
Q Consensus 408 ~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~ 461 (507)
++++|+..|++++..+|+.+.+...+|.++..+|++++|+..|+++++.+|++.
T Consensus 333 ~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 333 QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999999998887777778889999999999999999999999986
No 14
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=1.5e-25 Score=239.64 Aligned_cols=379 Identities=11% Similarity=-0.002 Sum_probs=284.9
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChh
Q psy12000 8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEK 87 (507)
Q Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (507)
....+|.++...|++++|+..|+++++.+|.+++++..++.++...|++++|+..++++....+..
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~-------------- 116 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDK-------------- 116 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------------
Confidence 467799999999999999999999999999999999999999999999999999998876543332
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12000 88 SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 167 (507)
Q Consensus 88 ~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 167 (507)
+. +..+|.++...|++++|+..|++++...|+++.++..+|.++...|+.++|++.++++.. +|+.
T Consensus 117 ------------~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~ 182 (765)
T PRK10049 117 ------------AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAE 182 (765)
T ss_pred ------------HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHH
Confidence 23 567899999999999999999999999999999999999999999999999999998776 6654
Q ss_pred HHH-----HHHHhhhhhh-----ccCh---HHHHHhhHHHHHhhCCCCCCC---hhHhHHHHHHHHHhhccHHHHHHHHH
Q psy12000 168 RIA-----LNLKACNTYK-----LFTS---RAAENQLKPILVSILPPLIDV---IPESRLNLVIYHLKQEEHQEAFDLIK 231 (507)
Q Consensus 168 ~~a-----~~~~a~~~~~-----~~~~---~~A~~~l~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~l~ 231 (507)
... ......+.+. .+++ ++|+..++.+.+ .....++. ...+++.....++..|++++|+..++
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~-~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~ 261 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA-LWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQ 261 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh-hcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 211 1111111111 1223 567777776653 12222222 22344442334467899999999998
Q ss_pred hcCCCC---hHH-HHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccc--cchhhhhHHHHHHHhhcCHHHHHHHHH
Q psy12000 232 NLEPSV---PQE-YILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSEC--DTVPGRQCMASSFFLLRSFKDVILYLS 305 (507)
Q Consensus 232 ~~~~~~---~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~Ai~~~~ 305 (507)
++.... |.. ....+.++...|+ +++|+..|+.+...+... ........++.++...|++++|+..++
T Consensus 262 ~ll~~~~~~P~~a~~~la~~yl~~g~-------~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 262 RLKAEGQIIPPWAQRWVASAYLKLHQ-------PEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HhhccCCCCCHHHHHHHHHHHHhcCC-------cHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 875432 432 2224566666665 456666665543322111 112233457778899999999999999
Q ss_pred HhhhhcCC-------------C--chHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHH
Q psy12000 306 SIKSYYTS-------------D--DSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSF 370 (507)
Q Consensus 306 ~~~~~~~~-------------~--~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 370 (507)
.+....|. + ..+.+.+|.++...|++++|++.+++++...|.+...+
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~------------------ 396 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLR------------------ 396 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------------------
Confidence 88876552 2 23456789999999999999999999876655432211
Q ss_pred HHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHH
Q psy12000 371 HLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQV 450 (507)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~ 450 (507)
..++.++...|++++|+..+++++..+|+++.+.+.+|.++.++|++++|+..+
T Consensus 397 --------------------------~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 397 --------------------------IDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred --------------------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 223456667799999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCchhhhhH
Q psy12000 451 AMYLAQKPTSRIALNL 466 (507)
Q Consensus 451 ~~~l~~~P~~~~a~~~ 466 (507)
+++++.+|+++.+..+
T Consensus 451 ~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 451 DDVVAREPQDPGVQRL 466 (765)
T ss_pred HHHHHhCCCCHHHHHH
Confidence 9999999999987654
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=1.1e-25 Score=235.90 Aligned_cols=335 Identities=11% Similarity=0.008 Sum_probs=267.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
....+..+...|++++|...++.++...|+++++++.+|.+....|++++|+..+++++..+|+++.++..++.++...|
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 34455667788899999999999999999988888888888888999999999999999999998888888888888888
Q ss_pred ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHH
Q psy12000 183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSRE 259 (507)
Q Consensus 183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~ 259 (507)
++++|...++++. ...|..+.++..++.++...|++++|+..+.++ .|.++..+... ..+...|
T Consensus 125 ~~~~Ai~~l~~Al-----~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g------- 191 (656)
T PRK15174 125 QYATVADLAEQAW-----LAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKS------- 191 (656)
T ss_pred CHHHHHHHHHHHH-----HhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcC-------
Confidence 8888888888764 245666778888888899999999988877654 45555433222 1233333
Q ss_pred HHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHH----HH
Q psy12000 260 MVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKE----AE 335 (507)
Q Consensus 260 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~----A~ 335 (507)
.+++|+..++.+....... .......++.++...|++++|+..++++....|+++.+++++|.++...|++++ |+
T Consensus 192 ~~~eA~~~~~~~l~~~~~~-~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 192 RLPEDHDLARALLPFFALE-RQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred CHHHHHHHHHHHHhcCCCc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 4455666665443221111 111223457888999999999999999999999998899999999999999986 89
Q ss_pred HHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHH
Q psy12000 336 EMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDI 415 (507)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~ 415 (507)
..|++++...|.+... ...++.++...|++++|+..
T Consensus 271 ~~~~~Al~l~P~~~~a--------------------------------------------~~~lg~~l~~~g~~~eA~~~ 306 (656)
T PRK15174 271 EHWRHALQFNSDNVRI--------------------------------------------VTLYADALIRTGQNEKAIPL 306 (656)
T ss_pred HHHHHHHhhCCCCHHH--------------------------------------------HHHHHHHHHHCCCHHHHHHH
Confidence 9999988666543211 13345677778999999999
Q ss_pred HHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCc
Q psy12000 416 YKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRV 495 (507)
Q Consensus 416 ~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (507)
+++++..+|+++.+...+|.+|.++|++++|+..++++++.+|+++.+....+..+..+++.+.|.+.|+..++..|.+.
T Consensus 307 l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 307 LQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999999999999999999999999999999999999998877788899999999999999999999999873
No 16
>KOG2002|consensus
Probab=99.95 E-value=8.6e-26 Score=226.97 Aligned_cols=466 Identities=14% Similarity=0.119 Sum_probs=340.6
Q ss_pred ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCC-------------------------------------CChhhHHHHH
Q psy12000 5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPN-------------------------------------PPEDTEFNIA 47 (507)
Q Consensus 5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-------------------------------------~~~~~~~~la 47 (507)
.++..+.+|+|...+|+.+.|+..|+++++++| .+|.+...++
T Consensus 198 ~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LA 277 (1018)
T KOG2002|consen 198 KADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLA 277 (1018)
T ss_pred CCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Confidence 456677788888888888888888888888777 4455566777
Q ss_pred HHHHhhccHHHHHHHHHhCCCCc----cccchHHHHHHh---cCChh-HHHHHHHHHhhcHH----HHHHHHHHHHHhhc
Q psy12000 48 SCYFYLGMYLQANQILEKVPPSR----AKTRLSFHLSHK---LGDEK-SLMEYHQKLEDSLE----EQLCLASIHFLRCH 115 (507)
Q Consensus 48 ~~~~~~g~~~eA~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~-~~~~~~~~l~~~~~----~~~~la~~~~~~g~ 115 (507)
.-++..|+|+.+..++..+.... .....++.++.. .|+.+ +...|.+.++..+. .++.+|++|...|+
T Consensus 278 n~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d 357 (1018)
T KOG2002|consen 278 NHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD 357 (1018)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch
Confidence 77777788887777776654322 222356666654 34433 33445555553332 27889999999999
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhh
Q psy12000 116 YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD----YYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQL 191 (507)
Q Consensus 116 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l 191 (507)
++.|+.+|++++..+|++.+.+..+|.+|...+ ..++|..++.+++...|.+..++..++.++.+ ++...+...+
T Consensus 358 le~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~ 436 (1018)
T KOG2002|consen 358 LEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAY 436 (1018)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-cChHHHHHHH
Confidence 999999999999999999999999999998876 78999999999999999999999988887654 4555557777
Q ss_pred HHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCC-----CChHHH-HHHHHHHHHhhhccCcHHHHHHHH
Q psy12000 192 KPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP-----SVPQEY-ILKAVVQVTIGQDTGSREMVKAAQ 265 (507)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~-----~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~ 265 (507)
..+.......-.+.+++...|+|..++..|++.+|...+.+... .+++.. ...-.....++...+....++.|.
T Consensus 437 ~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~ 516 (1018)
T KOG2002|consen 437 GNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAE 516 (1018)
T ss_pred HHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHH
Confidence 77653222233346789999999999999999999998875422 122221 000112334555555566677888
Q ss_pred HHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccC
Q psy12000 266 ALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEG 345 (507)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~ 345 (507)
+.|+.|... .|..+.++..+|.+...+++..+|...++.+...+..++.++-.+|..+....++..|..-|+.++...
T Consensus 517 e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~ 594 (1018)
T KOG2002|consen 517 EMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT 594 (1018)
T ss_pred HHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh
Confidence 888766432 344566677788777788999999999999999998888888889999999999999999888776332
Q ss_pred CC--chhhhhhhhccc-----Cc-------cchhhhHHHHHHHHcCC---------------------cHHHHHHHHHhh
Q psy12000 346 LK--NDYVYISHLTKC-----SP-------SRAKTRLSFHLSHKLGD---------------------EKSLMEYHQKLE 390 (507)
Q Consensus 346 ~~--~~~~~~~~l~~~-----~~-------~~~~~~~A~~~~~~~~~---------------------~~~~~~~~~~l~ 390 (507)
.. +.+..++ ||.. +. ..+.+++|+.+|.+..+ ..++..+...+.
T Consensus 595 ~~~~D~Yslia-LGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVr 673 (1018)
T KOG2002|consen 595 STKTDAYSLIA-LGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVR 673 (1018)
T ss_pred ccCCchhHHHH-hhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHH
Confidence 22 2222222 2221 11 23455678887775432 223445555554
Q ss_pred hc----HHHHHHHHHHHHhHhhHHHHHHHHHHHhhcC--CchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhh
Q psy12000 391 DS----LEEQLCLASIHFLRCHYQEAIDIYKRILLDH--KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL 464 (507)
Q Consensus 391 ~~----~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~--p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~ 464 (507)
+. .+.++.++.++..+|+|-.||+.|+.+++.. .+++.+..+||.+++.-|.+.+|.+.+-.++...|.++...
T Consensus 674 Ea~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~ 753 (1018)
T KOG2002|consen 674 EATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVK 753 (1018)
T ss_pred HHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHH
Confidence 33 3456789999999999999999999999743 35678899999999999999999999999999999999988
Q ss_pred hHHHhhhhhc
Q psy12000 465 NLKACNTYKL 474 (507)
Q Consensus 465 ~~~~~~~~~~ 474 (507)
..++-+++++
T Consensus 754 FN~a~v~kkl 763 (1018)
T KOG2002|consen 754 FNLALVLKKL 763 (1018)
T ss_pred hHHHHHHHHH
Confidence 8888887753
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=3.3e-24 Score=229.59 Aligned_cols=268 Identities=11% Similarity=-0.021 Sum_probs=169.7
Q ss_pred hhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHH--HHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhh
Q psy12000 206 IPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILK--AVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPG 283 (507)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 283 (507)
.+.++.++|.++.. ++.++|+..+.+.....|..+... +.++...| .+++|+..|+++...+.. ...
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~G-------r~eeAi~~~rka~~~~p~---~~a 544 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVE-------DYATALAAWQKISLHDMS---NED 544 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCC-------CHHHHHHHHHHHhccCCC---cHH
Confidence 44455666666655 566666665544322222222221 22222222 334455555443322111 122
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccc
Q psy12000 284 RQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSR 363 (507)
Q Consensus 284 ~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 363 (507)
+..+|.++...|++++|+.+++++....|+.......++.....+|++++|+..|++++..+|. ...+. .++.++...
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~-~LA~~l~~l 622 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYV-ARATIYRQR 622 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHHC
Confidence 3445666666777777777776666666655444444455555557777777777776655443 22221 234444455
Q ss_pred hhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccc
Q psy12000 364 AKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYY 443 (507)
Q Consensus 364 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~ 443 (507)
|++++|...+.+.... -++.+.....++.++...|++++|+..|+++++.+|+++.+++++|+++..+|++
T Consensus 623 G~~deA~~~l~~AL~l---------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 623 HNVPAAVSDLRAALEL---------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred CCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 5555554444332110 0111223355677888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCc
Q psy12000 444 DVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRV 495 (507)
Q Consensus 444 ~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (507)
++|+..++++++..|+++......+++.-.-...+.+...++..+-..|.-.
T Consensus 694 ~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 694 AATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 9999999999999999999999999988887778888888888888877654
No 18
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=4.8e-23 Score=216.49 Aligned_cols=457 Identities=12% Similarity=-0.005 Sum_probs=330.6
Q ss_pred ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000 5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG 84 (507)
Q Consensus 5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (507)
.....+..+.+.++.|+++.|+..|+++++.+|.++....-++.++...|+.++|+..++++....+..
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~----------- 101 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNIS----------- 101 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCC-----------
Confidence 455667789999999999999999999999999996443488888889999999999999987322211
Q ss_pred ChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000 85 DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 164 (507)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 164 (507)
......+|.++..+|++++|++.|+++++.+|+++.++..++.++...++.++|++.++++...+
T Consensus 102 ---------------~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d 166 (822)
T PRK14574 102 ---------------SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD 166 (822)
T ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence 01134567899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCC-ChHHH-H
Q psy12000 165 PTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPS-VPQEY-I 242 (507)
Q Consensus 165 p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~-~~~~~-~ 242 (507)
|++... ..++.++...++..+|+..++++++ ..|..+++...+..+..+.|-...|.+.+.+...- ++... -
T Consensus 167 p~~~~~-l~layL~~~~~~~~~AL~~~ekll~-----~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~ 240 (822)
T PRK14574 167 PTVQNY-MTLSYLNRATDRNYDALQASSEAVR-----LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQ 240 (822)
T ss_pred cchHHH-HHHHHHHHhcchHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHH
Confidence 996664 4444454445666568888888753 45777788889999999999999999888764211 11111 1
Q ss_pred HH---HHHHHHhhhccC-----cHHHHHHHHHHHHHh----CCCccc-ccchhhhhHHHHHHHhhcCHHHHHHHHHHhhh
Q psy12000 243 LK---AVVQVTIGQDTG-----SREMVKAAQALFQLV----GSSQSE-CDTVPGRQCMASSFFLLRSFKDVILYLSSIKS 309 (507)
Q Consensus 243 ~~---~~~~~~~g~~~~-----~~~~~~~A~~~~~~~----~~~~~~-~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~ 309 (507)
+. +...+..+.... .-...++|..-+..+ ...+.. +....++.-.-.++...+++.+++.-|+.+..
T Consensus 241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 11 111111221111 111334444433332 222211 11122222334567788999999999998875
Q ss_pred hc-CCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCc-----hhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHH
Q psy12000 310 YY-TSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKN-----DYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLM 383 (507)
Q Consensus 310 ~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 383 (507)
.. |-++-+.-..|.+|..++++++|+.+|.+++...+.. ......-|-.++.-.+++++|..+..++.....-
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~- 399 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY- 399 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-
Confidence 54 3344456678999999999999999999987543211 1100111233555667777777666655432110
Q ss_pred HHHHHhh---hc-HHH----HHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHh
Q psy12000 384 EYHQKLE---DS-LEE----QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA 455 (507)
Q Consensus 384 ~~~~~l~---~~-~~~----~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~ 455 (507)
...... .. .++ ...++..+...|++.+|...+++++...|.+..+...+|.++...|++.+|+..++.++.
T Consensus 400 -~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 400 -QVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred -EEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 000000 00 112 223455566679999999999999999999999999999999999999999999999999
Q ss_pred cCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCc
Q psy12000 456 QKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRV 495 (507)
Q Consensus 456 ~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (507)
++|++..+..-++...+.+++.+.|++...++.+.+|++.
T Consensus 479 l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 479 LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 9999999999999999999999999999999999999983
No 19
>KOG0547|consensus
Probab=99.94 E-value=8.7e-24 Score=197.74 Aligned_cols=370 Identities=17% Similarity=0.104 Sum_probs=270.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
+-..|.-++..|+|++||++|.++|+.+|+.+..+.+++-||...|+|++-++...+++.++|++..+++.++..+-++|
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHhhHHH------------------HH--------hhCC-CCCCChh---------------------------H
Q psy12000 183 TSRAAENQLKPI------------------LV--------SILP-PLIDVIP---------------------------E 208 (507)
Q Consensus 183 ~~~~A~~~l~~~------------------~~--------~~~~-~~~~~~~---------------------------~ 208 (507)
++++|...+.-. ++ ..+. .-+|..| +
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD 277 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD 277 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence 998876433221 00 0011 0111111 1
Q ss_pred hHHHHHHHHHhh---ccHHHHHHHHHhc-------CCCC---------hHHHHHHHHHHHHhhhccCcHHHHHHHHHHHH
Q psy12000 209 SRLNLVIYHLKQ---EEHQEAFDLIKNL-------EPSV---------PQEYILKAVVQVTIGQDTGSREMVKAAQALFQ 269 (507)
Q Consensus 209 ~~~~l~~~~~~~---~~~~~A~~~l~~~-------~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 269 (507)
+-..=+.-++.. ..|.+|...+.+- ...+ .....++|..++..|+...+...+++++.+..
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~ 357 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP 357 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc
Confidence 111111111222 3677777665431 1111 23345677888888888888899998887543
Q ss_pred HhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCch
Q psy12000 270 LVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKND 349 (507)
Q Consensus 270 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~ 349 (507)
.. ..-+..+|.+|...++-++-..+|.++..++|+++.+++.+|.+++-++++++|++.|++++..+|.+.
T Consensus 358 ~~---------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~ 428 (606)
T KOG0547|consen 358 AF---------NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA 428 (606)
T ss_pred cc---------chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh
Confidence 21 111446899999999999999999999999999999999999999999999999999999999888777
Q ss_pred hhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCc----
Q psy12000 350 YVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD---- 425 (507)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~---- 425 (507)
..|+.. +-+.++.+++......+.. ...+.+..++..-..+.+..-+++|++|++.|+++++..|.
T Consensus 429 ~~~iQl-~~a~Yr~~k~~~~m~~Fee---------~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 429 YAYIQL-CCALYRQHKIAESMKTFEE---------AKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHH---------HHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 666542 2222333333322222111 11223333334444566777788999999999999999998
Q ss_pred --hhhhHHHHHhhcc-ccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhC
Q psy12000 426 --LLALNVYGAMCYY-KLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSA 491 (507)
Q Consensus 426 --~~~~~~~la~~y~-~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (507)
++....+-|.+.. =.++++.|++.++++++.+|....|+-.+|.+.....+-+.|+..|.+-.+.+
T Consensus 499 ~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 499 IVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred cccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5555554444332 24889999999999999999999999999998888888888888888766654
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.9e-22 Score=201.00 Aligned_cols=141 Identities=10% Similarity=0.007 Sum_probs=118.5
Q ss_pred ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000 5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG 84 (507)
Q Consensus 5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (507)
.....+..|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++...+.....
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~--------- 104 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE--------- 104 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH---------
Confidence 34455678999999999999999999999999999999999999999999999999999887543221100
Q ss_pred ChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000 85 DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 164 (507)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 164 (507)
. ....+..+|.+|...|++++|+..|++++..+|.+..++..++.++...|++++|++.++++++.+
T Consensus 105 --~-----------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 105 --Q-----------RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred --H-----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 0 001256789999999999999999999999999999999999999999999999999999988776
Q ss_pred CCc
Q psy12000 165 PTS 167 (507)
Q Consensus 165 p~~ 167 (507)
|.+
T Consensus 172 ~~~ 174 (389)
T PRK11788 172 GDS 174 (389)
T ss_pred CCc
Confidence 654
No 21
>KOG0548|consensus
Probab=99.91 E-value=1.4e-22 Score=192.66 Aligned_cols=419 Identities=17% Similarity=0.131 Sum_probs=272.9
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHH
Q psy12000 11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLM 90 (507)
Q Consensus 11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (507)
.-|+..+..|||+.|+.+|.+++.++|.+.-.+.+...+|..+|+|++|++...+..+..+..
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w----------------- 69 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW----------------- 69 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch-----------------
Confidence 358899999999999999999999999998899999999999999999999888776533321
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12000 91 EYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA 170 (507)
Q Consensus 91 ~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a 170 (507)
+..+..+|..+.-.|+|++|+..|.+.|+.+|++..++..++.++ .-++.. .+.|. .|....
T Consensus 70 ---------~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~--~~~~~~-~~~~~-----~p~~~~- 131 (539)
T KOG0548|consen 70 ---------AKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY--LEDYAA-DQLFT-----KPYFHE- 131 (539)
T ss_pred ---------hhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh--hHHHHh-hhhcc-----CcHHHH-
Confidence 223678899999999999999999999999999999999999888 222111 11111 111100
Q ss_pred HHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc--------------CCC
Q psy12000 171 LNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL--------------EPS 236 (507)
Q Consensus 171 ~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~--------------~~~ 236 (507)
-++..- .-++-.....|..+.. .. ...|..... |+.-....+|...+..+ .+.
T Consensus 132 --~l~~~p--~t~~~~~~~~~~~~l~-~~-~~~p~~l~~-------~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~ 198 (539)
T KOG0548|consen 132 --KLANLP--LTNYSLSDPAYVKILE-II-QKNPTSLKL-------YLNDPRLMKADGQLKGVDELLFYASGIEILASMA 198 (539)
T ss_pred --HhhcCh--hhhhhhccHHHHHHHH-Hh-hcCcHhhhc-------ccccHHHHHHHHHHhcCccccccccccccCCCCC
Confidence 000000 0000000011111110 00 000100000 11111111111111100 011
Q ss_pred ChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCch
Q psy12000 237 VPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDS 316 (507)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~ 316 (507)
.|...- .-+.. .-.+..++.. .... ...+-.+|....+..++..|++-+..+..++ .+..
T Consensus 199 ~p~~~~-------~~~~~-~~~d~~ee~~---~k~~--------a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it 258 (539)
T KOG0548|consen 199 EPCKQE-------HNGFP-IIEDNTEERR---VKEK--------AHKEKELGNAAYKKKDFETAIQHYAKALELA-TDIT 258 (539)
T ss_pred Cccccc-------CCCCC-ccchhHHHHH---HHHh--------hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhH
Confidence 111000 00000 0000001000 0000 0112257889999999999999999888888 6666
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHhhcccCCC--chhhh----hhhhcccCccchhhhHHHHHHHHcCCcH---HHHHHHH
Q psy12000 317 FNFNFAQAKCALGQYKEAEEMFLLVQNEGLK--NDYVY----ISHLTKCSPSRAKTRLSFHLSHKLGDEK---SLMEYHQ 387 (507)
Q Consensus 317 ~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~ 387 (507)
.+.+.+.+|+..|++.+++....++++.... ..... ++.+|.++.+.++++.++..+.+..... +.+.-.+
T Consensus 259 ~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk 338 (539)
T KOG0548|consen 259 YLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLK 338 (539)
T ss_pred HHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHH
Confidence 7788899999999999999888887643311 11111 2235678888888888888777654322 1222111
Q ss_pred Hhhhc-----------HH---HHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHH
Q psy12000 388 KLEDS-----------LE---EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY 453 (507)
Q Consensus 388 ~l~~~-----------~~---~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 453 (507)
..... ++ ....-|.-++..|+|..|+..|++++..+|++..++.+.|.||.++|.+..|++..+.+
T Consensus 339 ~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 339 EAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 11111 00 01224667778899999999999999999999999999999999999999999999999
Q ss_pred HhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCccC
Q psy12000 454 LAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRVRF 497 (507)
Q Consensus 454 l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (507)
++++|++..++..+|.+++.+.....|...|++.++++|.+-++
T Consensus 419 ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 419 IELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 99999999999999999999999999999999999999988543
No 22
>KOG2003|consensus
Probab=99.91 E-value=4.1e-22 Score=184.78 Aligned_cols=399 Identities=16% Similarity=0.161 Sum_probs=210.2
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHhCCCCc--cccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHH
Q psy12000 42 TEFNIASCYFYLGMYLQANQILEKVPPSR--AKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEA 119 (507)
Q Consensus 42 ~~~~la~~~~~~g~~~eA~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A 119 (507)
+.++++.-|-....+.||+..++-+.+.. ++... ..+++|.+|+++.+|.+|
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~--------------------------lkmnigni~~kkr~fska 256 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGI--------------------------LKMNIGNIHFKKREFSKA 256 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCce--------------------------eeeeecceeeehhhHHHH
Confidence 46677777777777777777766554321 11100 024566677777777777
Q ss_pred HHHHHHHHHhCCc-----hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHH
Q psy12000 120 IDIYKRILLDHKD-----LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPI 194 (507)
Q Consensus 120 ~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~ 194 (507)
+++|+.++..-|. ...++.++|..+.+.|+|+.|+..|+.++...|+...++++.. +++-.|+-+...++|.++
T Consensus 257 ikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i-~~f~i~d~ekmkeaf~kl 335 (840)
T KOG2003|consen 257 IKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLII-CAFAIGDAEKMKEAFQKL 335 (840)
T ss_pred HHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhh-hheecCcHHHHHHHHHHH
Confidence 7777777666663 2345566666677777777777777777777776666666443 334455555555555554
Q ss_pred HH--------------------------------------------------hhC-CCCC--------------------
Q psy12000 195 LV--------------------------------------------------SIL-PPLI-------------------- 203 (507)
Q Consensus 195 ~~--------------------------------------------------~~~-~~~~-------------------- 203 (507)
+. ++. +-..
T Consensus 336 i~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~ 415 (840)
T KOG2003|consen 336 IDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHA 415 (840)
T ss_pred hcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhh
Confidence 31 000 0000
Q ss_pred CChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHH----HHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCccccc
Q psy12000 204 DVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYI----LKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECD 279 (507)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~ 279 (507)
+...+.-.+-+.-|+++|+++.|+++++-+...+...-. .....++..|- ..+..|.++-......+..
T Consensus 416 ~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqgg-----k~~~~aqqyad~aln~dry-- 488 (840)
T KOG2003|consen 416 ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGG-----KDFADAQQYADIALNIDRY-- 488 (840)
T ss_pred hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcc-----cchhHHHHHHHHHhccccc--
Confidence 111122345566789999999999998766443322111 11111111111 1122233222221111100
Q ss_pred chhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhccc
Q psy12000 280 TVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 359 (507)
Q Consensus 280 ~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 359 (507)
...+....|.+-+..|++++|.+.|+.++..+.....++|+.|..+..+|+.++|+.+|-+.-..-..+..+. --++..
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl-~qiani 567 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVL-VQIANI 567 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHH-HHHHHH
Confidence 0001112344445555555555555555444333344455555555555555555555544210000000010 012223
Q ss_pred CccchhhhHHHHHHH---------------------HcCCcHHHHHHHHH----hhhcHHHHHHHHHHHHhHhhHHHHHH
Q psy12000 360 SPSRAKTRLSFHLSH---------------------KLGDEKSLMEYHQK----LEDSLEEQLCLASIHFLRCHYQEAID 414 (507)
Q Consensus 360 ~~~~~~~~~A~~~~~---------------------~~~~~~~~~~~~~~----l~~~~~~~~~l~~~~~~~~~~~~Ai~ 414 (507)
|....+...|++++. +-++...+...+-. +.-+++..-+++.-+....-.++||.
T Consensus 568 ye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~ 647 (840)
T KOG2003|consen 568 YELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAIN 647 (840)
T ss_pred HHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHH
Confidence 333333333333332 22222222222111 01111111223333333456789999
Q ss_pred HHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcC
Q psy12000 415 IYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 475 (507)
Q Consensus 415 ~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~ 475 (507)
+|+++--..|+-..+...+|.|+.+.|+|++|.+.|++...++|.+..++.++-++.=-++
T Consensus 648 y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 648 YFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999887666543333
No 23
>KOG1173|consensus
Probab=99.90 E-value=2.5e-21 Score=184.77 Aligned_cols=413 Identities=17% Similarity=0.129 Sum_probs=286.4
Q ss_pred CccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCC------Ccccc----
Q psy12000 4 ADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPP------SRAKT---- 73 (507)
Q Consensus 4 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~------~~~~~---- 73 (507)
.++.--+|+|.+++-.|+|.+|....+.- .....+....+..+.|+..++++++|..++..... ..+..
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 34555689999999999999998877665 44555666788899999999999999998873310 00000
Q ss_pred ----------------chHHH---HHHhcCC-hhHHHHHHHHHh---hcHH-------HHHHHH-H--HHH-------Hh
Q psy12000 74 ----------------RLSFH---LSHKLGD-EKSLMEYHQKLE---DSLE-------EQLCLA-S--IHF-------LR 113 (507)
Q Consensus 74 ----------------~~~~~---~~~~~~~-~~~~~~~~~~l~---~~~~-------~~~~la-~--~~~-------~~ 113 (507)
.+.+. ....... ..+-..+.+.+. .+.+ ..+..+ . ..+ ..
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~ 205 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLT 205 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhh
Confidence 00000 0000111 111112222222 1111 111111 0 000 11
Q ss_pred hcHHHHHHHHHHHH----------HhCC--------chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000 114 CHYQEAIDIYKRIL----------LDHK--------DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA 175 (507)
Q Consensus 114 g~~~~A~~~~~~~l----------~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a 175 (507)
+...+=.+.+=++. ..+| +++++....+..++..++|.+..++++.++..+|-+...+-+..
T Consensus 206 ~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~i 285 (611)
T KOG1173|consen 206 KEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHI 285 (611)
T ss_pred hhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHH
Confidence 22222222221111 1112 34567777888899999999999999999999999998776655
Q ss_pred hhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh---cCCCChHHHHHHHHHHHHhh
Q psy12000 176 CNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN---LEPSVPQEYILKAVVQVTIG 252 (507)
Q Consensus 176 ~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~---~~~~~~~~~~~~~~~~~~~g 252 (507)
.+++.+|+...--..=-+ +.+.-|..+-.|+.+|..|+-.|++++|.+.+.+ ++|.....|+..|.++...|
T Consensus 286 a~l~el~~~n~Lf~lsh~-----LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~ 360 (611)
T KOG1173|consen 286 ACLYELGKSNKLFLLSHK-----LVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEG 360 (611)
T ss_pred HHHHHhcccchHHHHHHH-----HHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcc
Confidence 566666654332111111 1233455666899999999999999999999976 57888889999999999889
Q ss_pred hccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHH
Q psy12000 253 QDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYK 332 (507)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 332 (507)
....++..|-.|-+++..-. .| ...+|.-|...++++-|..+|..+..+.|++|.+...+|.+.+..+.|.
T Consensus 361 EhdQAmaaY~tAarl~~G~h--------lP-~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~ 431 (611)
T KOG1173|consen 361 EHDQAMAAYFTAARLMPGCH--------LP-SLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYP 431 (611)
T ss_pred hHHHHHHHHHHHHHhccCCc--------ch-HHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhH
Confidence 88888888888887764211 22 3468999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHH
Q psy12000 333 EAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEA 412 (507)
Q Consensus 333 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~A 412 (507)
+|..+|++++..-... .+ +...+ .+-...+|.++...++|++|
T Consensus 432 ~A~~~f~~~l~~ik~~----------------------------~~--e~~~w-------~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 432 EALKYFQKALEVIKSV----------------------------LN--EKIFW-------EPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhhhc----------------------------cc--cccch-------hHHHHhHHHHHHHHhhHHHH
Confidence 9999999876211000 00 00000 01124467787888999999
Q ss_pred HHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHH
Q psy12000 413 IDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA 468 (507)
Q Consensus 413 i~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~ 468 (507)
|.+|++++...|.++..+..+|.+|..+|++|.|++.|.++|-+.|++..+--+++
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999977655544
No 24
>KOG0547|consensus
Probab=99.90 E-value=2.4e-20 Score=174.92 Aligned_cols=401 Identities=11% Similarity=0.043 Sum_probs=273.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccc-cchHHHHHHhcCChhHH
Q psy12000 11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAK-TRLSFHLSHKLGDEKSL 89 (507)
Q Consensus 11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 89 (507)
..|+-+|..|+|++||++|+.+++..|+.+..|.+++-||...|+|++.++...++.+..+. ..+++.-+......+..
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccH
Confidence 36999999999999999999999999999999999999999999999999999988764443 23454444332222222
Q ss_pred HHHHHHH------hhcHHH-H-HHHHHHHHHhhcH----------------HHHHHHHHHHHHhCCc-------h-hHHH
Q psy12000 90 MEYHQKL------EDSLEE-Q-LCLASIHFLRCHY----------------QEAIDIYKRILLDHKD-------L-LALN 137 (507)
Q Consensus 90 ~~~~~~l------~~~~~~-~-~~la~~~~~~g~~----------------~~A~~~~~~~l~~~p~-------~-~~~~ 137 (507)
.++...+ ...... . ..+-.++-++|.- ..-+..|-.+...+|. + .++-
T Consensus 200 ~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~ 279 (606)
T KOG0547|consen 200 DEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAA 279 (606)
T ss_pred HHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhh
Confidence 2221111 100000 0 0011111111110 0122222222222221 0 1111
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhc---CC-Cc---------HHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCC
Q psy12000 138 VYGAMCYYKLD---YYDVSQEQVAMYLAQ---KP-TS---------RIALNLKACNTYKLFTSRAAENQLKPILVSILPP 201 (507)
Q Consensus 138 ~~la~~~~~~g---~~~~A~~~~~~~l~~---~p-~~---------~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~ 201 (507)
..-+.-+...+ .|.+|...+.+.... .+ .+ ..++.+.|..++-.|+...|...|+.+++
T Consensus 280 l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~----- 354 (606)
T KOG0547|consen 280 LAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK----- 354 (606)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh-----
Confidence 11111112222 566666666554321 01 11 23567777788888888888888887753
Q ss_pred CCCChhHhHHHHHHHHHhhccHHHHHHHHH---hcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccc
Q psy12000 202 LIDVIPESRLNLVIYHLKQEEHQEAFDLIK---NLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSEC 278 (507)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~ 278 (507)
+.+..+..+..++.+|+...+-++-+..|. .++|.+|+.+.-+|.+.+.+++...+...|++|+.+ .|
T Consensus 355 l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L---------~p 425 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL---------DP 425 (606)
T ss_pred cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc---------Ch
Confidence 445555668889999999999888888776 468999999999999999988877777777777642 44
Q ss_pred cchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcc
Q psy12000 279 DTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTK 358 (507)
Q Consensus 279 ~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 358 (507)
..+.++..++...++++++++++..|+.++...|+.+.++...|.++..++++++|++.|.+++..++....++.+.
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~--- 502 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA--- 502 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc---
Confidence 56667778999999999999999999999999999998888789999999999999999999988776544333221
Q ss_pred cCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhcc
Q psy12000 359 CSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYY 438 (507)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~ 438 (507)
+ .+ +.. .-+. ..+ .+++.+|+.+++++++.+|..-.++..||-.-.
T Consensus 503 ~------------------------pl---V~K---a~l~---~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~l 548 (606)
T KOG0547|consen 503 A------------------------PL---VHK---ALLV---LQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFEL 548 (606)
T ss_pred h------------------------hh---hhh---hHhh---hch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 0 00 000 0000 111 278999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHhcCCCchh
Q psy12000 439 KLDYYDVSQEQVAMYLAQKPTSRI 462 (507)
Q Consensus 439 ~~g~~~~A~~~~~~~l~~~P~~~~ 462 (507)
++|+.++|++.|++++.+--...+
T Consensus 549 Q~~~i~eAielFEksa~lArt~~E 572 (606)
T KOG0547|consen 549 QRGKIDEAIELFEKSAQLARTESE 572 (606)
T ss_pred HHhhHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999876544333
No 25
>KOG3785|consensus
Probab=99.90 E-value=2.1e-22 Score=181.39 Aligned_cols=187 Identities=45% Similarity=0.744 Sum_probs=169.2
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccch
Q psy12000 285 QCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRA 364 (507)
Q Consensus 285 ~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 364 (507)
.|+|.|++..|+|++|+..|.-+...+.-+..+..+|+.+++-.|+|.+|...-.++-+...
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL------------------ 122 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPL------------------ 122 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChH------------------
Confidence 47999999999999999988877654433445678899999999999999999888744321
Q ss_pred hhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccch
Q psy12000 365 KTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYD 444 (507)
Q Consensus 365 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~ 444 (507)
..+..+.+..+++++.+.+..++.++++.+++++++.++|.+-+|++||++|++++..+|+...++.++|.||+|+.-+|
T Consensus 123 ~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYyd 202 (557)
T KOG3785|consen 123 CIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYD 202 (557)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhh
Confidence 13556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHH
Q psy12000 445 VSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILV 489 (507)
Q Consensus 445 ~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (507)
.+.+++...++.+||++.|.|+++|++|++.+|+.++.+.++|..
T Consensus 203 vsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~lad 247 (557)
T KOG3785|consen 203 VSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELAD 247 (557)
T ss_pred hHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHh
Confidence 999999999999999999999999999999999999998888764
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=2.1e-20 Score=186.43 Aligned_cols=309 Identities=14% Similarity=0.024 Sum_probs=222.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH----HHHHHHhhhh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR----IALNLKACNT 178 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~a~~~~a~~~ 178 (507)
.+.+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++...+... .++..++.++
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 567799999999999999999999999999999999999999999999999999999887533222 2344556666
Q ss_pred hhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcH
Q psy12000 179 YKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSR 258 (507)
Q Consensus 179 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 258 (507)
...|+++.|...++++.+ ..+....++..++.++..+|++++|++.+.++....|.
T Consensus 118 ~~~g~~~~A~~~~~~~l~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------------------- 173 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVD-----EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD------------------- 173 (389)
T ss_pred HHCCCHHHHHHHHHHHHc-----CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-------------------
Confidence 666677777666665531 23334455666666666666666666655433111100
Q ss_pred HHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHH
Q psy12000 259 EMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMF 338 (507)
Q Consensus 259 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 338 (507)
+........+..+|.++...|++++|+.+++++.+..|+...+++.+|.++...|++++|++.|
T Consensus 174 ----------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 237 (389)
T PRK11788 174 ----------------SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEAL 237 (389)
T ss_pred ----------------cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 0000011123457888899999999999999998888887778888999999999999999999
Q ss_pred HhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHH
Q psy12000 339 LLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKR 418 (507)
Q Consensus 339 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~ 418 (507)
++++..++.... . ....++.++...|++++|+..+++
T Consensus 238 ~~~~~~~p~~~~---------------------------------~----------~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 238 ERVEEQDPEYLS---------------------------------E----------VLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHChhhHH---------------------------------H----------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 998754321100 0 012234577788999999999999
Q ss_pred HhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcC--ChHHHHHHHHH----HHHhCC
Q psy12000 419 ILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF--TSRAAENQLKP----ILVSAG 492 (507)
Q Consensus 419 ~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~ 492 (507)
++...|+...+ ..+|.++.+.|++++|+..++++++.+|+++....++......-. ..+.+...++. ++...|
T Consensus 275 ~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 275 ALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 99999987655 788999999999999999999999999999976655554443222 33444444554 445555
Q ss_pred CCc
Q psy12000 493 PRV 495 (507)
Q Consensus 493 ~~~ 495 (507)
.+.
T Consensus 354 ~~~ 356 (389)
T PRK11788 354 RYR 356 (389)
T ss_pred CEE
Confidence 543
No 27
>KOG1126|consensus
Probab=99.88 E-value=1.2e-20 Score=183.75 Aligned_cols=302 Identities=14% Similarity=0.099 Sum_probs=236.9
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChH
Q psy12000 106 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSR 185 (507)
Q Consensus 106 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~ 185 (507)
.|.....+-+..+|+..|.+.-...++..++...+|..|+.+++|++|..+|+.+-+..|--....-....++..+.+.
T Consensus 325 ~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~- 403 (638)
T KOG1126|consen 325 EGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE- 403 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh-
Confidence 3444445677889999999977778898999999999999999999999999999999998777666666666554432
Q ss_pred HHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHH
Q psy12000 186 AAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQ 265 (507)
Q Consensus 186 ~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 265 (507)
-+...+. +.+...++..|+.|-.+|.+|.-+++++.|+..+++....+|.. +.+|..+|......+.+++|.
T Consensus 404 v~Ls~La----q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f----aYayTLlGhE~~~~ee~d~a~ 475 (638)
T KOG1126|consen 404 VALSYLA----QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF----AYAYTLLGHESIATEEFDKAM 475 (638)
T ss_pred HHHHHHH----HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc----chhhhhcCChhhhhHHHHhHH
Confidence 2222222 23345678899999999999999999999999998764444421 123445666666677888888
Q ss_pred HHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccC
Q psy12000 266 ALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEG 345 (507)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~ 345 (507)
..|+.... .+++...||+.+|.+|.++++++.|.-.|+++.+++|.+....-.+|.++.+.|+.|+|+.+|++++..+
T Consensus 476 ~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 476 KSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred HHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 88876542 3456778888899999999999999999999999999888777888999999999999999999987666
Q ss_pred CCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCc
Q psy12000 346 LKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD 425 (507)
Q Consensus 346 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~ 425 (507)
+.+... . ...+.+.+..++|++|+..++++-+.-|+
T Consensus 554 ~kn~l~--------------------~------------------------~~~~~il~~~~~~~eal~~LEeLk~~vP~ 589 (638)
T KOG1126|consen 554 PKNPLC--------------------K------------------------YHRASILFSLGRYVEALQELEELKELVPQ 589 (638)
T ss_pred CCCchh--------------------H------------------------HHHHHHHHhhcchHHHHHHHHHHHHhCcc
Confidence 543210 0 11234666678999999999999999999
Q ss_pred hhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchh
Q psy12000 426 LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 462 (507)
Q Consensus 426 ~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~ 462 (507)
...+++.+|.+|.++|+.+.|+..|--+..++|.-..
T Consensus 590 es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 590 ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 9999999999999999999999999999999887544
No 28
>KOG2076|consensus
Probab=99.88 E-value=2.5e-18 Score=172.64 Aligned_cols=454 Identities=15% Similarity=0.050 Sum_probs=264.6
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000 9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS 88 (507)
Q Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (507)
.+..|+..+..|++++|.+++.++++++|.++.+|+.+|.||-.+|+.++|....-.+.-..+.
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~---------------- 205 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK---------------- 205 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC----------------
Confidence 3446888999999999999999999999999999999999999999999998865544221111
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
+.+.+..++....++|++.+|+-+|.++|+.+|.+....+..+.+|-++|+...|.+.|.+++...|...
T Consensus 206 ----------d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d 275 (895)
T KOG2076|consen 206 ----------DYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVD 275 (895)
T ss_pred ----------ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchh
Confidence 1223555666666666677777777777777776666666666666677777777777766666666211
Q ss_pred H----H-HHHHhhhhhhccChHHHHHhhHHHHH-----------------------------------h-----------
Q psy12000 169 I----A-LNLKACNTYKLFTSRAAENQLKPILV-----------------------------------S----------- 197 (507)
Q Consensus 169 ~----a-~~~~a~~~~~~~~~~~A~~~l~~~~~-----------------------------------~----------- 197 (507)
. . ....+......+..+.|...++.... .
T Consensus 276 ~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 276 IERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhh
Confidence 1 0 00011111122222333333332211 0
Q ss_pred ----------hCCCC----CCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHH
Q psy12000 198 ----------ILPPL----IDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKA 263 (507)
Q Consensus 198 ----------~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 263 (507)
.+... ....+-.+..++.+.++.++..+++..+.......+.+ ....+..+.+.....+.++.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d---~~dL~~d~a~al~~~~~~~~ 432 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSD---DVDLYLDLADALTNIGKYKE 432 (895)
T ss_pred hhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhh---hHHHHHHHHHHHHhcccHHH
Confidence 00000 00011125555666666667666665554322111111 01122222222333456788
Q ss_pred HHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000 264 AQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQN 343 (507)
Q Consensus 264 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~ 343 (507)
|+.+|..+...+.. +....|..+|.||..+|.|++|+++|++++...|++..+...|+.++.++|+.++|.+.+..+..
T Consensus 433 Al~~l~~i~~~~~~-~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 433 ALRLLSPITNREGY-QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHHhcCccc-cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 99998876554332 22345667999999999999999999999999999999999999999999999999999999876
Q ss_pred cCCCchhhh--------hhhhcccCccchhhhHHH----H----------------------------------------
Q psy12000 344 EGLKNDYVY--------ISHLTKCSPSRAKTRLSF----H---------------------------------------- 371 (507)
Q Consensus 344 ~~~~~~~~~--------~~~l~~~~~~~~~~~~A~----~---------------------------------------- 371 (507)
+++.+...- .......+...|+.+.=+ .
T Consensus 512 ~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~ 591 (895)
T KOG2076|consen 512 PDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIR 591 (895)
T ss_pred CCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHH
Confidence 653321000 000011111111111100 0
Q ss_pred HHHHcCCcHHH---H-----HHHHHhh-hcHHHHH--HHHHH--HHhHhhHHHHHHHHHHHhhc-----CCchh-hhHHH
Q psy12000 372 LSHKLGDEKSL---M-----EYHQKLE-DSLEEQL--CLASI--HFLRCHYQEAIDIYKRILLD-----HKDLL-ALNVY 432 (507)
Q Consensus 372 ~~~~~~~~~~~---~-----~~~~~l~-~~~~~~~--~l~~~--~~~~~~~~~Ai~~~~~~l~~-----~p~~~-~~~~~ 432 (507)
.-.+..+.... . ....... -+++++. .+..+ ....+++++|.++...++.. +++.. .+.+-
T Consensus 592 ~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~ 671 (895)
T KOG2076|consen 592 AREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFL 671 (895)
T ss_pred HHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHH
Confidence 00000110000 0 0000000 0133432 22222 23347999999999988752 23322 34444
Q ss_pred HHhhccccccchhHHHHHHHHHhc-----CCCchhhhhHHHhhhhhcCChHHHH--HHHHHHHHhCCCC
Q psy12000 433 GAMCYYKLDYYDVSQEQVAMYLAQ-----KPTSRIALNLKACNTYKLFTSRAAE--NQLKPILVSAGPR 494 (507)
Q Consensus 433 la~~y~~~g~~~~A~~~~~~~l~~-----~P~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 494 (507)
...|-...+++..|.+.++-++.. +|-....+|+..+.... .+++.. +.+..+.+..|.+
T Consensus 672 ~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~--~~q~v~~~R~~~~~~~~~~~~ 738 (895)
T KOG2076|consen 672 GLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSK--YGQRVCYLRLIMRLLVKNKDD 738 (895)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhccCccC
Confidence 445566788999999999999988 88888888864443333 233322 2444455555544
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=5e-19 Score=186.31 Aligned_cols=406 Identities=11% Similarity=-0.018 Sum_probs=251.5
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHH--HHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000 11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNI--ASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS 88 (507)
Q Consensus 11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l--a~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (507)
.+..++...|++++|+.++++++ +|.+...+..+ |.++..+|++++|++.++++....+.+.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~-------------- 136 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP-------------- 136 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--------------
Confidence 56677778899999999999999 55544444444 7799999999999999999876555431
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
..+..++.++...+++++|++.+++++..+|++... ..++.++..+++..+|++.+++++..+|++.
T Consensus 137 ------------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~ 203 (822)
T PRK14574 137 ------------DLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSE 203 (822)
T ss_pred ------------HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCH
Confidence 113345667777777778888777777777775443 3445555556666667777777777777777
Q ss_pred HHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhH--HHHHHHHH---------hhccH---HHHHHHHHhcC
Q psy12000 169 IALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESR--LNLVIYHL---------KQEEH---QEAFDLIKNLE 234 (507)
Q Consensus 169 ~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~--~~l~~~~~---------~~~~~---~~A~~~l~~~~ 234 (507)
..+..+..++-..|-...|.+..+.. +..-......+ ...+.-.. ..++| |.|+..+..+.
T Consensus 204 e~~~~~~~~l~~~~~~~~a~~l~~~~-----p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 204 EVLKNHLEILQRNRIVEPALRLAKEN-----PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHhC-----ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 76665555555666666665544321 00000000000 00111111 11222 33444333332
Q ss_pred ---CCChHH--HHH-----HHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHH
Q psy12000 235 ---PSVPQE--YIL-----KAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYL 304 (507)
Q Consensus 235 ---~~~~~~--~~~-----~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~ 304 (507)
+..|.. ... +-.++... +.+++++..|+.+...... -+..++.+.|..|...++.++|+.+|
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r-------~r~~~vi~~y~~l~~~~~~-~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVR-------HQTADLIKEYEAMEAEGYK-MPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 233322 111 11122222 3345666666655533321 12235567888888888888888888
Q ss_pred HHhhhhcC----CCchH--HHHHHHHHHhhCCHHHHHHHHHhhcccCC-----------Cchhhh---hhhhcccCccch
Q psy12000 305 SSIKSYYT----SDDSF--NFNFAQAKCALGQYKEAEEMFLLVQNEGL-----------KNDYVY---ISHLTKCSPSRA 364 (507)
Q Consensus 305 ~~~~~~~~----~~~~~--~~~lg~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~~---~~~l~~~~~~~~ 364 (507)
+.+....| .++.. ...|-.+|..++++++|..+++++.+..| .++.-| ...++.++...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 87765432 11122 34567788888888888888887764211 111222 122344444445
Q ss_pred hhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccch
Q psy12000 365 KTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYD 444 (507)
Q Consensus 365 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~ 444 (507)
+...|.+.+.++.. .-+.+..-.+.++.++..+|++.+|...++.++..+|++..+....|.++..+|+++
T Consensus 431 dl~~Ae~~le~l~~---------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 431 DLPTAQKKLEDLSS---------TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWH 501 (822)
T ss_pred CHHHHHHHHHHHHH---------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHH
Confidence 55555444333211 011111223456778888899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCchhhhhHH
Q psy12000 445 VSQEQVAMYLAQKPTSRIALNLK 467 (507)
Q Consensus 445 ~A~~~~~~~l~~~P~~~~a~~~~ 467 (507)
+|....+.+++.+|+++.+..+.
T Consensus 502 ~A~~~~~~l~~~~Pe~~~~~~l~ 524 (822)
T PRK14574 502 QMELLTDDVISRSPEDIPSQELD 524 (822)
T ss_pred HHHHHHHHHHhhCCCchhHHHHH
Confidence 99999999999999999876543
No 30
>PLN03077 Protein ECB2; Provisional
Probab=99.87 E-value=3.8e-18 Score=186.41 Aligned_cols=357 Identities=12% Similarity=-0.014 Sum_probs=233.9
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCcHHHHHHHhhhhhh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA--QKPTSRIALNLKACNTYK 180 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~a~~~~a~~~~~ 180 (507)
+..+...|.+.|++++|..+|+++.. | +...|..+...|.+.|++++|+++|+++.. ..|+......++ ....+
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~~--~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll-~a~~~ 401 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRMET--K-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL-SACAC 401 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHH-HHHhc
Confidence 56677788888888888888887642 3 344566777788888888888888887754 346665432222 23346
Q ss_pred ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHH
Q psy12000 181 LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREM 260 (507)
Q Consensus 181 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 260 (507)
.|+.+.|...++.+.+... .....++..|...|.+.|++++|.+.++++...+...|......+...|+
T Consensus 402 ~g~~~~a~~l~~~~~~~g~----~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~------- 470 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGL----ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNR------- 470 (857)
T ss_pred cchHHHHHHHHHHHHHhCC----CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCC-------
Confidence 6777777777776643111 11234566788888999999999999888766555444433333333332
Q ss_pred HHHHHHHHHHhCCCcccccch----------------------------------hhhhHHHHHHHhhcCHHHHHHHHHH
Q psy12000 261 VKAAQALFQLVGSSQSECDTV----------------------------------PGRQCMASSFFLLRSFKDVILYLSS 306 (507)
Q Consensus 261 ~~~A~~~~~~~~~~~~~~~~~----------------------------------~~~~~la~~~~~~~~~~~Ai~~~~~ 306 (507)
.++|+.+|+..... ..|+.. .....|...|.+.|+.++|...|+.
T Consensus 471 ~~eA~~lf~~m~~~-~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~ 549 (857)
T PLN03077 471 CFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS 549 (857)
T ss_pred HHHHHHHHHHHHhC-CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHh
Confidence 23444444332211 111110 0112355788999999999998887
Q ss_pred hhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCC-CchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHH
Q psy12000 307 IKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGL-KNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEY 385 (507)
Q Consensus 307 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 385 (507)
. .| +...+..+...|.+.|+.++|++.|+++.+.+. ++...|...+ .++.+.|..++|++++..+.....
T Consensus 550 ~---~~-d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll-~a~~~~g~v~ea~~~f~~M~~~~g---- 620 (857)
T PLN03077 550 H---EK-DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL-CACSRSGMVTQGLEYFHSMEEKYS---- 620 (857)
T ss_pred c---CC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH-HHHhhcChHHHHHHHHHHHHHHhC----
Confidence 6 33 444556688999999999999999999875432 3444444433 355667788888777766531100
Q ss_pred HHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhh
Q psy12000 386 HQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN 465 (507)
Q Consensus 386 ~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 465 (507)
+.-......++...+...|++++|.+.++++ ...|+...+...++ ++..-|+.+.+....++++++.|+++..+.
T Consensus 621 ---i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~-ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ 695 (857)
T PLN03077 621 ---ITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLN-ACRIHRHVELGELAAQHIFELDPNSVGYYI 695 (857)
T ss_pred ---CCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHhhCCCCcchHH
Confidence 0000011123444566679999999999987 35677655555454 567788999999999999999999999999
Q ss_pred HHHhhhhhcCChHHHHHHHHHHHH
Q psy12000 466 LKACNTYKLFTSRAAENQLKPILV 489 (507)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~ 489 (507)
++++++...+..+.+....+...+
T Consensus 696 ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 696 LLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999988887777775555543
No 31
>KOG1126|consensus
Probab=99.86 E-value=4.1e-20 Score=180.13 Aligned_cols=285 Identities=18% Similarity=0.127 Sum_probs=214.6
Q ss_pred HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc--------chHHHHHHhcC
Q psy12000 13 GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT--------RLSFHLSHKLG 84 (507)
Q Consensus 13 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~--------~~~~~~~~~~~ 84 (507)
|+....+=+.++|+..|++.-...++...+...+|+.|+.+++|++|.++|+.+.+..+.. .++.++-
T Consensus 326 ~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---- 401 (638)
T KOG1126|consen 326 GYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---- 401 (638)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH----
Confidence 4444455667899999999777778888888899999999999999999999875433221 0222221
Q ss_pred ChhHHHHH-HHHH---hhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12000 85 DEKSLMEY-HQKL---EDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY 160 (507)
Q Consensus 85 ~~~~~~~~-~~~l---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 160 (507)
+.-++... ...+ +..|+.+-.+|.+|-.+++++.|+++|+++++.+|.+.-+|..+|-=+.....+|+|...|+.+
T Consensus 402 ~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 402 DEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred hhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 11111111 1112 2356778899999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCC
Q psy12000 161 LAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSV 237 (507)
Q Consensus 161 l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~ 237 (507)
+..+|.+-.|++-+|.+++++++++.|+-.|+++. ...|.+....-.+|.++.+.|+.|+|+.++++. +|.+
T Consensus 482 l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~-----~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 482 LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV-----EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhh-----cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence 99999888877777777777777777777776653 234444444555666666666666666666542 3333
Q ss_pred hHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchH
Q psy12000 238 PQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSF 317 (507)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~ 317 (507)
| ..++..|.+++..++|++|+..++.++..-|++..+
T Consensus 557 ~-------------------------------------------l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v 593 (638)
T KOG1126|consen 557 P-------------------------------------------LCKYHRASILFSLGRYVEALQELEELKELVPQESSV 593 (638)
T ss_pred c-------------------------------------------hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHH
Confidence 2 223456888999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhhcccCCCch
Q psy12000 318 NFNFAQAKCALGQYKEAEEMFLLVQNEGLKND 349 (507)
Q Consensus 318 ~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~ 349 (507)
++.+|.+|.+.|+.+.|+..|-=+.+.+|...
T Consensus 594 ~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 594 FALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 99999999999999999999998887776543
No 32
>KOG1155|consensus
Probab=99.85 E-value=8.8e-18 Score=156.94 Aligned_cols=314 Identities=13% Similarity=0.108 Sum_probs=227.5
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRILLD-HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
+.++.++......++++.-++..+.. .|.+.-+-..+|.+.+...++|+|++.|+.+.+.+|-...-+-+.+.+++-..
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 35667777777899999999999888 78888888899999999999999999999999999987765555555544433
Q ss_pred ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHH
Q psy12000 183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSRE 259 (507)
Q Consensus 183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~ 259 (507)
+... ...+-. .+...+...|+.---+|+.|.-.++.++|+..|++. +|.....|.+.|.-++.+.....+..
T Consensus 311 ~~sk-Ls~LA~----~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 311 DKSK-LSYLAQ----NVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhHH-HHHHHH----HHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHH
Confidence 3211 111111 111233444555555778888899999999998864 55555677777877777776666666
Q ss_pred HHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHH
Q psy12000 260 MVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFL 339 (507)
Q Consensus 260 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 339 (507)
.|..|+++ .|....+|+.||.+|..++-.-=|+-||+++....|+|+..+..||.||.+.++.++|+.+|+
T Consensus 386 sYRrAvdi---------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 386 SYRRAVDI---------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred HHHHHHhc---------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 66666542 233467788899999999999999999999999999998888889999999999999999999
Q ss_pred hhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q psy12000 340 LVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRI 419 (507)
Q Consensus 340 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~ 419 (507)
+++.....+...+ ..++..|-..+++++|..+|++.
T Consensus 457 rai~~~dte~~~l--------------------------------------------~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 457 RAILLGDTEGSAL--------------------------------------------VRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHhccccchHHH--------------------------------------------HHHHHHHHHHHhHHHHHHHHHHH
Confidence 8864332111111 12233445556778888888877
Q ss_pred hh-------cCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCC
Q psy12000 420 LL-------DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAG 492 (507)
Q Consensus 420 l~-------~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (507)
++ ..|+...+...||.-+.+.+++++|-.....++.-.| .-+.+.+.+++|+..--
T Consensus 493 v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~-----------------e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 493 VEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET-----------------ECEEAKALLREIRKIQA 555 (559)
T ss_pred HHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc-----------------hHHHHHHHHHHHHHhcC
Confidence 75 5677777888899999999999999877766655422 23566667777766533
No 33
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.85 E-value=8.7e-18 Score=179.33 Aligned_cols=450 Identities=10% Similarity=0.002 Sum_probs=304.1
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhhccHHHHHHHHHhCCCCc--cccc---hHHHHHHhcC
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNP--PEDTEFNIASCYFYLGMYLQANQILEKVPPSR--AKTR---LSFHLSHKLG 84 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~--~~~~---~~~~~~~~~~ 84 (507)
+-..+...|++++|++.|+.+....|. +...+..+..++...++++.|..++....... +... .+.....+.+
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC
Confidence 445577889999999999998765443 34567778888889999999998887654321 1111 2223333333
Q ss_pred ChhHHHHHHHHHhh-cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 85 DEKSLMEYHQKLED-SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD-LLALNVYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 85 ~~~~~~~~~~~l~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
..+.+......+.. +...+..+...|.+.|++++|+.+|++++...+. +...+..+..++...|+.+.+.+++..+++
T Consensus 173 ~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 173 MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred CHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 33333333322221 1222777888889999999999999998876532 234455566677888999999888887775
Q ss_pred cC-CCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCC--CChH
Q psy12000 163 QK-PTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP--SVPQ 239 (507)
Q Consensus 163 ~~-p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~--~~~~ 239 (507)
.. ..+...++.+...+.+.|+.++|...|+.+ .+.+...|..++..|.+.|++++|+.++.++.. ..|+
T Consensus 253 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m--------~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM--------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC--------CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 43 223445666667778889999999888765 223446788899999999999999999987621 1222
Q ss_pred --HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchH
Q psy12000 240 --EYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSF 317 (507)
Q Consensus 240 --~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~ 317 (507)
.+.....++...| .+++|.+++..+......++. ..+..|...|.+.|++++|..+|+.+.+ |+- ..
T Consensus 325 ~~t~~~ll~a~~~~g-------~~~~a~~i~~~m~~~g~~~d~-~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~-~t 393 (697)
T PLN03081 325 QFTFSIMIRIFSRLA-------LLEHAKQAHAGLIRTGFPLDI-VANTALVDLYSKWGRMEDARNVFDRMPR--KNL-IS 393 (697)
T ss_pred HHHHHHHHHHHHhcc-------chHHHHHHHHHHHHhCCCCCe-eehHHHHHHHHHCCCHHHHHHHHHhCCC--CCe-ee
Confidence 2322223333333 445666666544333222222 2344688999999999999999998764 333 45
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhhcccCC-CchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHH
Q psy12000 318 NFNFAQAKCALGQYKEAEEMFLLVQNEGL-KNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQ 396 (507)
Q Consensus 318 ~~~lg~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 396 (507)
+..+...|.+.|+.++|++.|+++...+. ++...|.. +..++...|..++|.+++..+..... +.-.....
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~-ll~a~~~~g~~~~a~~~f~~m~~~~g-------~~p~~~~y 465 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA-VLSACRYSGLSEQGWEIFQSMSENHR-------IKPRAMHY 465 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHH-HHHHHhcCCcHHHHHHHHHHHHHhcC-------CCCCccch
Confidence 56689999999999999999999875433 34444444 34456677888888877766532100 00000011
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCC
Q psy12000 397 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT 476 (507)
Q Consensus 397 ~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~ 476 (507)
.++...+...|++++|.+.++++ ...|+... +..+..++...|+.+.|...+++.++..|+++..++.+..++...+.
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~-~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRA-PFKPTVNM-WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHH-HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 22334556679999999999875 34455443 44455678899999999999999999999999999999999999888
Q ss_pred hHHHHHHHHHHHHh
Q psy12000 477 SRAAENQLKPILVS 490 (507)
Q Consensus 477 ~~~~~~~~~~~~~~ 490 (507)
.+.|...++.+.+.
T Consensus 544 ~~~A~~v~~~m~~~ 557 (697)
T PLN03081 544 QAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHHc
Confidence 88888877776654
No 34
>KOG0624|consensus
Probab=99.84 E-value=1.3e-18 Score=156.56 Aligned_cols=333 Identities=14% Similarity=0.109 Sum_probs=234.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000 101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180 (507)
Q Consensus 101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~ 180 (507)
+.++.+|.-+...|++..|+..|..+++.+|++..+++..|.+|+.+|+-..|+.-+++++.+.|+..-|-.-.+.++++
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 34889999999999999999999999999999999999999999999999999999999999999998888888888888
Q ss_pred ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHH--HHHHHhhhccCcH
Q psy12000 181 LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKA--VVQVTIGQDTGSR 258 (507)
Q Consensus 181 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~--~~~~~~g~~~~~~ 258 (507)
+|..++|+..|..+++. ........++...++.+-- .+.+.. .....-|+
T Consensus 119 ~Gele~A~~DF~~vl~~--~~s~~~~~eaqskl~~~~e---------------------~~~l~~ql~s~~~~GD----- 170 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQH--EPSNGLVLEAQSKLALIQE---------------------HWVLVQQLKSASGSGD----- 170 (504)
T ss_pred cccHHHHHHHHHHHHhc--CCCcchhHHHHHHHHhHHH---------------------HHHHHHHHHHHhcCCc-----
Confidence 89999988888876430 0001111122222111100 011110 11111222
Q ss_pred HHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHH
Q psy12000 259 EMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMF 338 (507)
Q Consensus 259 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 338 (507)
...++++...+.+.. +-..+-+...+.||...|+...||..++.+.++..++...+|..+.+++..|+.+.++...
T Consensus 171 --~~~ai~~i~~llEi~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~i 246 (504)
T KOG0624|consen 171 --CQNAIEMITHLLEIQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEI 246 (504)
T ss_pred --hhhHHHHHHHHHhcC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHH
Confidence 234444444333221 1112224457899999999999999999998888888888999999999999999999999
Q ss_pred HhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHH
Q psy12000 339 LLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKR 418 (507)
Q Consensus 339 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~ 418 (507)
+.+++.+|+....|. .|.++....+.+... .-....++|.+++...++
T Consensus 247 RECLKldpdHK~Cf~------------------~YKklkKv~K~les~--------------e~~ie~~~~t~cle~ge~ 294 (504)
T KOG0624|consen 247 RECLKLDPDHKLCFP------------------FYKKLKKVVKSLESA--------------EQAIEEKHWTECLEAGEK 294 (504)
T ss_pred HHHHccCcchhhHHH------------------HHHHHHHHHHHHHHH--------------HHHHhhhhHHHHHHHHHH
Confidence 999988776543221 111111100111000 111233678888888888
Q ss_pred HhhcCCchhhhHH----HHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000 419 ILLDHKDLLALNV----YGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR 494 (507)
Q Consensus 419 ~l~~~p~~~~~~~----~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
+++.+|..+.+.+ .+..||.+-|++-+|+..+..+|+++|++..++--++..++-...++.|+.+|++..++.|.|
T Consensus 295 vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 295 VLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 8888887554332 356778888888888888888888888888888878877777667888888888888888877
Q ss_pred ccC
Q psy12000 495 VRF 497 (507)
Q Consensus 495 ~~~ 497 (507)
-+.
T Consensus 375 ~~~ 377 (504)
T KOG0624|consen 375 TRA 377 (504)
T ss_pred HHH
Confidence 443
No 35
>KOG1174|consensus
Probab=99.84 E-value=2.5e-17 Score=151.76 Aligned_cols=395 Identities=14% Similarity=0.130 Sum_probs=283.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhcCC--------------------CCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCc
Q psy12000 11 WLGYCHFHLGQYKQALGIYETLRHLP--------------------NPPEDTEFNIASCYFYLGMYLQANQILEKVPPSR 70 (507)
Q Consensus 11 ~lg~~~~~~g~~~~A~~~~~~~l~~~--------------------p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~ 70 (507)
++.+..+....|..|.+.|..++++. |.+.+.....+.||-..|+-+.|+.....+++..
T Consensus 48 yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~ 127 (564)
T KOG1174|consen 48 YLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL 127 (564)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc
Confidence 34566667778888888888887642 3345677899999999999999999998887632
Q ss_pred cccc---hHHHHHHhcC-ChhHHHHHHHHHhhcH--------------------------------HH---H--HHHHHH
Q psy12000 71 AKTR---LSFHLSHKLG-DEKSLMEYHQKLEDSL--------------------------------EE---Q--LCLASI 109 (507)
Q Consensus 71 ~~~~---~~~~~~~~~~-~~~~~~~~~~~l~~~~--------------------------------~~---~--~~la~~ 109 (507)
...+ ++..+...-+ ..+....+-..+.++| .+ . ..+|.+
T Consensus 128 r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~ 207 (564)
T KOG1174|consen 128 RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQM 207 (564)
T ss_pred cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHH
Confidence 2221 2222221111 1111111111111100 01 1 233444
Q ss_pred HHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHH
Q psy12000 110 HFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAEN 189 (507)
Q Consensus 110 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~ 189 (507)
+....-+..+..++-+..+.-|++...+..+|.|++..|++++|+..|++....||....+.-..|.++.+.|++++-..
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 43333444455556666777899999999999999999999999999999999999999999888988888999887766
Q ss_pred hhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh---cCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHH
Q psy12000 190 QLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN---LEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQA 266 (507)
Q Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 266 (507)
....+.. ..+...+-|+--+...+..+++..|+....+ +++.+...++++|..+..+++...+.-+|..|+.
T Consensus 288 L~~~Lf~-----~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 288 LMDYLFA-----KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHh-----hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 5555432 2334555677777888889999999887764 5777778899999999999888766666666654
Q ss_pred HHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHH-HHHHh-hCCHHHHHHHHHhhccc
Q psy12000 267 LFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFA-QAKCA-LGQYKEAEEMFLLVQNE 344 (507)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg-~~~~~-~g~~~~A~~~~~~~~~~ 344 (507)
+ .|-.+..+..|-.+|...|++.+|+..-+.+....|.+...+-.+| .+++. -..-++|.+.+++.+..
T Consensus 363 L---------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~ 433 (564)
T KOG1174|consen 363 L---------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI 433 (564)
T ss_pred c---------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc
Confidence 2 1222344567889999999999999888887777777766666676 44444 45678999999998876
Q ss_pred CCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCC
Q psy12000 345 GLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK 424 (507)
Q Consensus 345 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p 424 (507)
.|. |+. ....++..+...|+++++|+.+++.+...|
T Consensus 434 ~P~----Y~~----------------------------------------AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~ 469 (564)
T KOG1174|consen 434 NPI----YTP----------------------------------------AVNLIAELCQVEGPTKDIIKLLEKHLIIFP 469 (564)
T ss_pred CCc----cHH----------------------------------------HHHHHHHHHHhhCccchHHHHHHHHHhhcc
Confidence 652 110 112223456667999999999999999999
Q ss_pred chhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhh
Q psy12000 425 DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL 464 (507)
Q Consensus 425 ~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~ 464 (507)
|.. ++..+|.++...+.+++|++.|..++.++|++..++
T Consensus 470 D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 470 DVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred ccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 854 677899999999999999999999999999998873
No 36
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.83 E-value=5.3e-17 Score=173.35 Aligned_cols=417 Identities=8% Similarity=-0.046 Sum_probs=291.4
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-chHHHHHHhc
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHL--PNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT-RLSFHLSHKL 83 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (507)
.++..+-.++...++++.|...+..+.+. .|+ ..++..+..+|.+.|++++|.++|++.+..+... ..+.......
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~-~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~ 202 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPD-QYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDA 202 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHC
Confidence 34445667777889999999998888764 453 4677788899999999999999999886532222 1233333334
Q ss_pred CChhHHHHHHHHH-hh----cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHhcCCHHHHHHHH
Q psy12000 84 GDEKSLMEYHQKL-ED----SLEEQLCLASIHFLRCHYQEAIDIYKRILLDH-KDLLALNVYGAMCYYKLDYYDVSQEQV 157 (507)
Q Consensus 84 ~~~~~~~~~~~~l-~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 157 (507)
++.+.+....... .. ....+..+...+...|....+.+++..+++.. ..+..++..+..+|.+.|++++|.++|
T Consensus 203 g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 282 (697)
T PLN03081 203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282 (697)
T ss_pred cCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHH
Confidence 4544444433333 21 11225556667777888999998888887765 235566777888999999999999998
Q ss_pred HHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcC---
Q psy12000 158 AMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLE--- 234 (507)
Q Consensus 158 ~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~--- 234 (507)
+++. +.+..+++.+...+.+.|+.++|...|..+.+.. ..| +...+..+...+.+.|++++|...+..+.
T Consensus 283 ~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g---~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 283 DGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG---VSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred HhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 8763 4456678878788888999999999998875311 111 23467778888999999999988876552
Q ss_pred -CCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhc--
Q psy12000 235 -PSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYY-- 311 (507)
Q Consensus 235 -~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~-- 311 (507)
+.+...+......|...| .+++|.++|+..... + ...|..|...|.+.|+.++|+++|+++....
T Consensus 356 ~~~d~~~~~~Li~~y~k~G-------~~~~A~~vf~~m~~~----d-~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWG-------RMEDARNVFDRMPRK----N-LISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred CCCCeeehHHHHHHHHHCC-------CHHHHHHHHHhCCCC----C-eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 122222222333344433 467788888766532 1 2345678899999999999999999887644
Q ss_pred CCCchHHHHHHHHHHhhCCHHHHHHHHHhhccc-CC-CchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHh
Q psy12000 312 TSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNE-GL-KNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKL 389 (507)
Q Consensus 312 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 389 (507)
|+.. .+..+..++.+.|+.++|.++|+.+.+. .. ++...| ..+.+++.+.|+.++|.+++.+++-.+....+.
T Consensus 424 Pd~~-T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y-~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~--- 498 (697)
T PLN03081 424 PNHV-TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY-ACMIELLGREGLLDEAYAMIRRAPFKPTVNMWA--- 498 (697)
T ss_pred CCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch-HhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHH---
Confidence 4433 3455778899999999999999988632 22 222333 335667778899999988887765444322211
Q ss_pred hhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhc
Q psy12000 390 EDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ 456 (507)
Q Consensus 390 ~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~ 456 (507)
.+-......|+++.|...+++++...|++...+..+..+|.+.|++++|.++++..-+.
T Consensus 499 --------~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 499 --------ALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred --------HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 12224445689999999999999999999888888999999999999999999877654
No 37
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.83 E-value=1.5e-16 Score=172.19 Aligned_cols=427 Identities=8% Similarity=-0.021 Sum_probs=211.9
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChh--hHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-chHHHHHHhc
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPED--TEFNIASCYFYLGMYLQANQILEKVPPSRAKT-RLSFHLSHKL 83 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (507)
..+..+=..+...|++++|++.|+++.+.+.-.++ .+..+...+...|..++|...++.....+... ..++......
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~ 450 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASS 450 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence 33444444555678888888888888766533322 23335556667788888888887765411111 0222222233
Q ss_pred CChhHHHHHHHHHhh-----cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHhcCCHHHHHHHH
Q psy12000 84 GDEKSLMEYHQKLED-----SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD-LLALNVYGAMCYYKLDYYDVSQEQV 157 (507)
Q Consensus 84 ~~~~~~~~~~~~l~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~ 157 (507)
++.+.+......+.+ +...+..+...|.+.|+.++|.++|+++...... +...+..+...|.+.|++++|+++|
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 333333333333221 1122555666666666677777666666655421 3445555666666666777776666
Q ss_pred HHHHh--cCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCC
Q psy12000 158 AMYLA--QKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP 235 (507)
Q Consensus 158 ~~~l~--~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~ 235 (507)
+.+.. ..|+. ..++.+...+.+.|+.++|...+..+.... ....| ....+..+...|.+.|++++|.+++..+..
T Consensus 531 ~~M~~~Gv~PD~-vTYnsLI~a~~k~G~~deA~~lf~eM~~~~-~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 531 GIMRSKNVKPDR-VVFNALISACGQSGAVDRAFDVLAEMKAET-HPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhc-CCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66653 23442 334444445556666666666666553210 00111 123455566666666666666666665532
Q ss_pred C----ChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhc
Q psy12000 236 S----VPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYY 311 (507)
Q Consensus 236 ~----~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~ 311 (507)
. ++..+......+... +.+++|..+|+........|+. ..+..+...+.+.|++++|+++++.+.+..
T Consensus 608 ~gi~p~~~tynsLI~ay~k~-------G~~deAl~lf~eM~~~Gv~PD~-~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQK-------GDWDFALSIYDDMKKKGVKPDE-VFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 2 112222222222222 2345666666554433333332 223345566666666666666666655433
Q ss_pred CC-CchHHHHHHHHHHhhCCHHHHHHHHHhhcccCC-CchhhhhhhhcccCccchhhhHHHHHHHHcCCc---HHHHHHH
Q psy12000 312 TS-DDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGL-KNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDE---KSLMEYH 386 (507)
Q Consensus 312 ~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 386 (507)
.. +...+..+..+|.+.|++++|.+.|+++..... ++...|. .+..++.+.|+.++|.+++.++... ++...+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN-~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN-ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 21 223344456666666666666666666543221 2222222 2344555555556555555443211 1111110
Q ss_pred HHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhh--cCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCC
Q psy12000 387 QKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILL--DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 459 (507)
Q Consensus 387 ~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~--~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~ 459 (507)
.+-..+...|++++|..++.++.+ ..|+.......++.|. +++++|.+..+..+..++.
T Consensus 759 -----------sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~---~~y~ka~~l~~~v~~f~~g 819 (1060)
T PLN03218 759 -----------ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL---RRFEKACALGEPVVSFDSG 819 (1060)
T ss_pred -----------HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---HHHHHHhhhhhhhhhhhcc
Confidence 011223334566666666666654 2344444443344332 2455555555544444433
No 38
>KOG2076|consensus
Probab=99.83 E-value=1.5e-17 Score=167.15 Aligned_cols=343 Identities=15% Similarity=0.018 Sum_probs=233.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
.+..|...+..|++++|..++.++|..+|.++.+++.||.||..+|+.++|....-.+--++|.+..-|...+....++|
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 67889999999999999999999999999999999999999999999999999999999999999998988899999999
Q ss_pred ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHH------HHH--HHHHHhhhc
Q psy12000 183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYI------LKA--VVQVTIGQD 254 (507)
Q Consensus 183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~------~~~--~~~~~~g~~ 254 (507)
++++|.-.+.++++ ..|...+..+..+.+|.++|++..|.+.+.++.+.+|..-+ .+. ..+...++
T Consensus 222 ~i~qA~~cy~rAI~-----~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~- 295 (895)
T KOG2076|consen 222 NINQARYCYSRAIQ-----ANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE- 295 (895)
T ss_pred cHHHHHHHHHHHHh-----cCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH-
Confidence 99999999998763 44555667788899999999999999999887665552211 111 11111111
Q ss_pred cCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhh--hcCCCchH---------------
Q psy12000 255 TGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKS--YYTSDDSF--------------- 317 (507)
Q Consensus 255 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~--~~~~~~~~--------------- 317 (507)
. +.|.+.+........+....+...-++.++.+..+++.|+........ ..+++..+
T Consensus 296 -----~-e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 296 -----R-ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred -----H-HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 1 344444432221111111222233578888899999999875543322 12222111
Q ss_pred ------------HHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHH
Q psy12000 318 ------------NFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEY 385 (507)
Q Consensus 318 ------------~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 385 (507)
...++.+..+.+...+++.++....+.. ..+...+
T Consensus 370 ~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~---------------------------------~~d~~dL 416 (895)
T KOG2076|consen 370 VGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW---------------------------------VSDDVDL 416 (895)
T ss_pred CCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC---------------------------------hhhhHHH
Confidence 1112222222223333333222111100 0111111
Q ss_pred HHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCch-hhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhh
Q psy12000 386 HQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL-LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL 464 (507)
Q Consensus 386 ~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~-~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~ 464 (507)
+.. ++..+...|+|.+|+.+|..+....+.. ..+++.+|.||..+|.+++|+.+|++++...|++..+.
T Consensus 417 ~~d----------~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~R 486 (895)
T KOG2076|consen 417 YLD----------LADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDAR 486 (895)
T ss_pred HHH----------HHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhh
Confidence 211 2234455588999999999888877654 45778889999999999999999999999999999988
Q ss_pred hHHHhhhhhcCChHHHHHHHHHHHHhCCCCccCCCCcc
Q psy12000 465 NLKACNTYKLFTSRAAENQLKPILVSAGPRVRFPPGAD 502 (507)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (507)
-.++.++..+++++.|-..+..|. .|.+...+..+|
T Consensus 487 i~Lasl~~~~g~~EkalEtL~~~~--~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 487 ITLASLYQQLGNHEKALETLEQII--NPDGRNAEACAW 522 (895)
T ss_pred hhHHHHHHhcCCHHHHHHHHhccc--CCCccchhhccc
Confidence 889999998888888877777776 333334444444
No 39
>PLN03077 Protein ECB2; Provisional
Probab=99.82 E-value=6.8e-17 Score=176.60 Aligned_cols=412 Identities=11% Similarity=0.007 Sum_probs=268.3
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCC------------------------
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVP------------------------ 67 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~------------------------ 67 (507)
+-..|...|+++.|...|+++.+. +...|..+...|.+.|++++|+..|.+..
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~~---d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPRR---DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCC---CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 445556666666666666665432 22345556666666666666666655431
Q ss_pred -----------CCc--cccc---hHHHHHHhcCChhHHHHHHHHHh-hcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy12000 68 -----------PSR--AKTR---LSFHLSHKLGDEKSLMEYHQKLE-DSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH 130 (507)
Q Consensus 68 -----------~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 130 (507)
+.. +... .+.....+.++.+.+....+.+. .+...+..+...|.+.|++++|+++|+++....
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g 384 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 110 1111 22223333444444444433332 222237788899999999999999999987665
Q ss_pred --CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChh
Q psy12000 131 --KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT-SRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIP 207 (507)
Q Consensus 131 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~ 207 (507)
|+...... +-..+.+.|++++|.+++..+.+.... +...++.+...+.+.|+.++|...|+.+. ..+.
T Consensus 385 ~~Pd~~t~~~-ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~--------~~d~ 455 (857)
T PLN03077 385 VSPDEITIAS-VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP--------EKDV 455 (857)
T ss_pred CCCCceeHHH-HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC--------CCCe
Confidence 66654443 334778899999999999998876432 33456666677788899999998887652 1233
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHhcCC-CChHHHHHHH--HHHHHhhhc----------------------------cC
Q psy12000 208 ESRLNLVIYHLKQEEHQEAFDLIKNLEP-SVPQEYILKA--VVQVTIGQD----------------------------TG 256 (507)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~A~~~l~~~~~-~~~~~~~~~~--~~~~~~g~~----------------------------~~ 256 (507)
..|..++..|...|++++|+..+.++.. ..|+...... .+....|.. ..
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence 4678888899999999999998877532 1222211111 111111111 11
Q ss_pred cHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhh--cCCCchHHHHHHHHHHhhCCHHHH
Q psy12000 257 SREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSY--YTSDDSFNFNFAQAKCALGQYKEA 334 (507)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A 334 (507)
..+.+++|...|+.. . + ...+|..+...|.+.|+.++|+++|+++.+. .|+... +..+-.++.+.|+.++|
T Consensus 536 k~G~~~~A~~~f~~~-~----~-d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 536 RCGRMNYAWNQFNSH-E----K-DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQG 608 (857)
T ss_pred HcCCHHHHHHHHHhc-C----C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHHH
Confidence 123456777777654 1 1 2344666889999999999999999988764 455543 34466789999999999
Q ss_pred HHHHHhhc-ccCC-CchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHH
Q psy12000 335 EEMFLLVQ-NEGL-KNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEA 412 (507)
Q Consensus 335 ~~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~A 412 (507)
..+|+.+. .... ++...| ..+.+++.+.|+.++|.+++.++.-.++...+. .+-..+...++.+.|
T Consensus 609 ~~~f~~M~~~~gi~P~~~~y-~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~-----------aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 609 LEYFHSMEEKYSITPNLKHY-ACVVDLLGRAGKLTEAYNFINKMPITPDPAVWG-----------ALLNACRIHRHVELG 676 (857)
T ss_pred HHHHHHHHHHhCCCCchHHH-HHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHH-----------HHHHHHHHcCChHHH
Confidence 99999987 2222 333344 446778888899999998888875333322111 111233345788888
Q ss_pred HHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHH
Q psy12000 413 IDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL 454 (507)
Q Consensus 413 i~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l 454 (507)
....+++++..|++...+..++.+|...|++++|.++.+.--
T Consensus 677 e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 889999999999999999999999999999999998877654
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=7.3e-20 Score=173.40 Aligned_cols=264 Identities=17% Similarity=0.074 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDH--KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~ 180 (507)
.+.+|.+++..|++++|++++++.+... |+++..+..+|.+...++++++|+..+++++..+|.++..+..++.+ ..
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 4567999999999999999997765554 78889998999999999999999999999998888876655444444 45
Q ss_pred ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHH
Q psy12000 181 LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREM 260 (507)
Q Consensus 181 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 260 (507)
.+++++|...+....+ . ...+..+..++.++...++++++...+.++.
T Consensus 90 ~~~~~~A~~~~~~~~~----~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~-------------------------- 137 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYE----R--DGDPRYLLSALQLYYRLGDYDEAEELLEKLE-------------------------- 137 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHH--------------------------
T ss_pred cccccccccccccccc----c--ccccchhhHHHHHHHHHhHHHHHHHHHHHHH--------------------------
Confidence 5555555544433211 0 1112223333344444555555544443321
Q ss_pred HHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHh
Q psy12000 261 VKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLL 340 (507)
Q Consensus 261 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 340 (507)
.....++....+..+|.++.+.|++++|+.+++++++..|+++.+...++.++...|+++++.+.+..
T Consensus 138 ------------~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~ 205 (280)
T PF13429_consen 138 ------------ELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKR 205 (280)
T ss_dssp ------------H-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ------------hccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 00000111222345678888888888888888888888888877777788888888888887777765
Q ss_pred hcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHh
Q psy12000 341 VQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL 420 (507)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l 420 (507)
.....+.+... +..++.++...|++++|+.+|++++
T Consensus 206 ~~~~~~~~~~~--------------------------------------------~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 206 LLKAAPDDPDL--------------------------------------------WDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHH-HTSCCH--------------------------------------------CHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHCcCHHHH--------------------------------------------HHHHHHHhccccccccccccccccc
Confidence 54222111111 1223456666688888888888888
Q ss_pred hcCCchhhhHHHHHhhccccccchhHHHHHHHHHh
Q psy12000 421 LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA 455 (507)
Q Consensus 421 ~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~ 455 (507)
..+|+++.+...+|.++...|++++|..+++++++
T Consensus 242 ~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 242 KLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHSTT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 88888888888888888888888888888887764
No 41
>KOG1155|consensus
Probab=99.81 E-value=3.5e-16 Score=146.33 Aligned_cols=356 Identities=12% Similarity=0.004 Sum_probs=241.9
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CcHHHHHHHhhhhhh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP--TSRIALNLKACNTYK 180 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~a~~~~a~~~~~ 180 (507)
++..|.++.+.|...+|++.|..++...|.+-.+|..|+.+.-. ++........-| .+...-..+..++..
T Consensus 167 lYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 167 LYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999888766544 333333333334 222222223333333
Q ss_pred ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChH---HHHHHHHHHHHhhhccCc
Q psy12000 181 LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQ---EYILKAVVQVTIGQDTGS 257 (507)
Q Consensus 181 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~---~~~~~~~~~~~~g~~~~~ 257 (507)
....+++..-.+.... .--+..+...-..|.+...+.++|+|+..|+.+...+|- +.-....++....+.
T Consensus 240 l~q~~e~~~k~e~l~~----~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~--- 312 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSS----VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK--- 312 (559)
T ss_pred HHHHHHHHHHHHHHHh----ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh---
Confidence 3455555544444321 112334445556788888999999999999988555542 211122222222211
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHH
Q psy12000 258 REMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEM 337 (507)
Q Consensus 258 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 337 (507)
..----|...++ +..-. +.+ .-.+|+.|...++.++|+.||+++++.+|....++..+|.-|..+++...|++.
T Consensus 313 skLs~LA~~v~~-idKyR--~ET---CCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKLSYLAQNVSN-IDKYR--PET---CCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHHH-hccCC--ccc---eeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHH
Confidence 111112443332 21111 111 123688899999999999999999999999888888899999999999999999
Q ss_pred HHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHH
Q psy12000 338 FLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYK 417 (507)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~ 417 (507)
|+++++.+|.+--.|-+ ||++|...+-+.-|...+++...-. +....-+..+|..+...++.++||++|+
T Consensus 387 YRrAvdi~p~DyRAWYG-LGQaYeim~Mh~YaLyYfqkA~~~k---------PnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 387 YRRAVDINPRDYRAWYG-LGQAYEIMKMHFYALYYFQKALELK---------PNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred HHHHHhcCchhHHHHhh-hhHHHHHhcchHHHHHHHHHHHhcC---------CCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999988876544433 5666666665565655555432210 0011123456777777789999999999
Q ss_pred HHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHh-------cCCCchhhhhHHHhhhhhcCChHHHHHHHHHHH
Q psy12000 418 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA-------QKPTSRIALNLKACNTYKLFTSRAAENQLKPIL 488 (507)
Q Consensus 418 ~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~-------~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (507)
+++...-.+..+++.+|.+|.++++.++|..+|++.++ +.|+...+.-.++.-.+..++.+.|.-=....+
T Consensus 457 rai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 457 RAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 99988777778889999999999999999999999998 567777777788888888888888776333333
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.80 E-value=1.8e-19 Score=170.67 Aligned_cols=256 Identities=18% Similarity=0.187 Sum_probs=85.6
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhc-C-CCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccc----hHHHHH
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRH-L-PNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTR----LSFHLS 80 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~-~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~----~~~~~~ 80 (507)
+..+.+|.+++..|++++|++++.+.+. . .|+++++|..+|.+...+|++++|+..++++...+..+. .+..+
T Consensus 9 ~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l- 87 (280)
T PF13429_consen 9 EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 3445679999999999999999966554 4 488889999999999999999999999998865433321 11111
Q ss_pred HhcCChhH-HHHHHHHHhhc--HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHhcCCHHHHHH
Q psy12000 81 HKLGDEKS-LMEYHQKLEDS--LEEQLCLASIHFLRCHYQEAIDIYKRILLDH--KDLLALNVYGAMCYYKLDYYDVSQE 155 (507)
Q Consensus 81 ~~~~~~~~-~~~~~~~l~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~ 155 (507)
...++.+. +..+....+.. +..+.....++...|+++++...++++.... |+++.++..+|.++.+.|++++|++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 11111111 11111111111 1113334445555556666655555544433 3445555555556666666666666
Q ss_pred HHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCC
Q psy12000 156 QVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP 235 (507)
Q Consensus 156 ~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~ 235 (507)
.++++++.+|+++ +++..++.+++..|+++++...+.....
T Consensus 168 ~~~~al~~~P~~~---------------------------------------~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 168 DYRKALELDPDDP---------------------------------------DARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHHHH-TT-H---------------------------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCH---------------------------------------HHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 6666655555554 3445566667777777776655543210
Q ss_pred CChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc
Q psy12000 236 SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD 315 (507)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~ 315 (507)
.. +.++. .+..+|.++...|++++|+.+++++....|+++
T Consensus 209 ~~-------------------------------------~~~~~---~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 209 AA-------------------------------------PDDPD---LWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp H--------------------------------------HTSCC---HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HC-------------------------------------cCHHH---HHHHHHHHhcccccccccccccccccccccccc
Confidence 00 00111 123579999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000 316 SFNFNFAQAKCALGQYKEAEEMFLLVQ 342 (507)
Q Consensus 316 ~~~~~lg~~~~~~g~~~~A~~~~~~~~ 342 (507)
.++..+|.++...|++++|..++.++.
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999998875
No 43
>PRK12370 invasion protein regulator; Provisional
Probab=99.80 E-value=1.4e-17 Score=172.04 Aligned_cols=191 Identities=15% Similarity=0.078 Sum_probs=159.5
Q ss_pred hcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhcc---------HHHHHHHHHhCCCCccccchHHHHHHhcCChhHH
Q psy12000 19 LGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGM---------YLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSL 89 (507)
Q Consensus 19 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---------~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (507)
.+++++|+..|+++++.+|+++.++..+|.++...+. +++|+..++++....+..
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~---------------- 337 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN---------------- 337 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC----------------
Confidence 3567899999999999999999999999998875543 788888888776544432
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 90 MEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 90 ~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
+..+..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|.++.
T Consensus 338 ----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~ 407 (553)
T PRK12370 338 ----------PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA 407 (553)
T ss_pred ----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh
Confidence 2336678999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChH
Q psy12000 170 ALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQ 239 (507)
Q Consensus 170 a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~ 239 (507)
+....+.+++..|++++|+..++++.. ..+|..+.++.++|.++..+|++++|...+.++.+..|.
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~----~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRS----QHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHH----hccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 766666667778899999988877542 234556778888999999999999999988877665554
No 44
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.79 E-value=1.6e-15 Score=164.42 Aligned_cols=417 Identities=13% Similarity=0.053 Sum_probs=288.4
Q ss_pred HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcc--ccc---hHHHHHHhcCChh
Q psy12000 13 GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRA--KTR---LSFHLSHKLGDEK 87 (507)
Q Consensus 13 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~ 87 (507)
-..+...|..++|...|..+.. |+ ...|..+-..+...|++++|..++++..+... ... .+.....+.++.+
T Consensus 413 i~~~~~~g~~~eAl~lf~~M~~--pd-~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd 489 (1060)
T PLN03218 413 FKACKKQRAVKEAFRFAKLIRN--PT-LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHcCC--CC-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHH
Confidence 3456678999999999988764 54 45677788889999999999999988754322 111 3334444455555
Q ss_pred HHHHHHHHHhh-----cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12000 88 SLMEYHQKLED-----SLEEQLCLASIHFLRCHYQEAIDIYKRILLDH--KDLLALNVYGAMCYYKLDYYDVSQEQVAMY 160 (507)
Q Consensus 88 ~~~~~~~~l~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 160 (507)
.+........+ +...+..+...|.+.|++++|+.+|+++.... |+ ...+..+...+.+.|++++|.++|+++
T Consensus 490 ~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM 568 (1060)
T PLN03218 490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEM 568 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55444444332 22337788999999999999999999998764 55 456778889999999999999999999
Q ss_pred Hh----cCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCC
Q psy12000 161 LA----QKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPS 236 (507)
Q Consensus 161 l~----~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~ 236 (507)
.. ..|+. ..++.+...+.+.|+.++|...|+.+.+. ..+..+..+..++..|.+.|++++|..++.++...
T Consensus 569 ~~~~~gi~PD~-vTynaLI~ay~k~G~ldeA~elf~~M~e~----gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 569 KAETHPIDPDH-ITVGALMKACANAGQVDRAKEVYQMIHEY----NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHhcCCCCCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 75 35664 45666666788999999999999988642 12224567888999999999999999999887432
Q ss_pred --ChHHHH--HHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhc-
Q psy12000 237 --VPQEYI--LKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYY- 311 (507)
Q Consensus 237 --~~~~~~--~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~- 311 (507)
.|+... .....+.. .+.+++|.++++........++. ..+..+..+|.+.|++++|+++|+.+....
T Consensus 644 Gv~PD~~TynsLI~a~~k-------~G~~eeA~~l~~eM~k~G~~pd~-~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~ 715 (1060)
T PLN03218 644 GVKPDEVFFSALVDVAGH-------AGDLDKAFEILQDARKQGIKLGT-VSYSSLMGACSNAKNWKKALELYEDIKSIKL 715 (1060)
T ss_pred CCCCCHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 333222 22222222 34568899998876554444433 345678999999999999999999886543
Q ss_pred -CCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCC-CchhhhhhhhcccCccchhhhHHHHHHHHcCCc---HHHHHHH
Q psy12000 312 -TSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGL-KNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDE---KSLMEYH 386 (507)
Q Consensus 312 -~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 386 (507)
|+. ..+..+...|.+.|++++|++.|+++...+. ++...|... ..++.+.|+.+.|.+++..+... ++...+
T Consensus 716 ~Pdv-vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL-L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~ty- 792 (1060)
T PLN03218 716 RPTV-STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL-LVASERKDDADVGLDLLSQAKEDGIKPNLVMC- 792 (1060)
T ss_pred CCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH-
Confidence 433 3455689999999999999999999874432 444555443 35667778888887766554321 111110
Q ss_pred HHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHh--cCCCchhhh
Q psy12000 387 QKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA--QKPTSRIAL 464 (507)
Q Consensus 387 ~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~--~~P~~~~a~ 464 (507)
..+ +....++|++|....+.++..++.. .....+..++|+..|++.++ ..||..+..
T Consensus 793 ----------nsL--Iglc~~~y~ka~~l~~~v~~f~~g~---------~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~ 851 (1060)
T PLN03218 793 ----------RCI--TGLCLRRFEKACALGEPVVSFDSGR---------PQIENKWTSWALMVYRETISAGTLPTMEVLS 851 (1060)
T ss_pred ----------HHH--HHHHHHHHHHHhhhhhhhhhhhccc---------cccccchHHHHHHHHHHHHHCCCCCCHHHHH
Confidence 011 1112246888888777666544322 22234456789999998886 469988887
Q ss_pred hHHHhh
Q psy12000 465 NLKACN 470 (507)
Q Consensus 465 ~~~~~~ 470 (507)
.+++|.
T Consensus 852 ~vL~cl 857 (1060)
T PLN03218 852 QVLGCL 857 (1060)
T ss_pred HHHHHh
Confidence 788876
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.79 E-value=5.5e-17 Score=161.65 Aligned_cols=299 Identities=10% Similarity=-0.004 Sum_probs=208.7
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000 9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS 88 (507)
Q Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (507)
.+.-|...+..||++.|.+.+.++.+..|+....+...|.++..+|+++.|...+.++.+..+....
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l------------- 153 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI------------- 153 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch-------------
Confidence 3456888999999999999999999999988888888999999999999999999886443222210
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
......+.++...|++++|...++++++..|+++.++..++.++...|++++|++.+.++.+..+.++
T Consensus 154 ------------~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~ 221 (409)
T TIGR00540 154 ------------LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD 221 (409)
T ss_pred ------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 01234578899999999999999999999999999999999999999999999999999998755444
Q ss_pred HHH---HHHhh-hhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHH---
Q psy12000 169 IAL---NLKAC-NTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEY--- 241 (507)
Q Consensus 169 ~a~---~~~a~-~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~--- 241 (507)
..+ ...+. -.+..+..+.....+..+.. ..+...+..+..+..++..+...|++++|.+.+.+.....|+..
T Consensus 222 ~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~-~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~ 300 (409)
T TIGR00540 222 EEFADLEQKAEIGLLDEAMADEGIDGLLNWWK-NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS 300 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch
Confidence 322 11111 11122222222233433321 11111224678899999999999999999999987644444332
Q ss_pred --HHHHHHHHHhhhccCcHHHHHHHHHHHHHhCC-CcccccchhhhhHHHHHHHhhcCHHHHHHHHH--HhhhhcCCCch
Q psy12000 242 --ILKAVVQVTIGQDTGSREMVKAAQALFQLVGS-SQSECDTVPGRQCMASSFFLLRSFKDVILYLS--SIKSYYTSDDS 316 (507)
Q Consensus 242 --~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~--~~~~~~~~~~~ 316 (507)
.+........+ ....+++.++.... .+.+++ ......+|+++++.|++++|.++|+ .+.+..|++..
T Consensus 301 ~~~l~~~~~l~~~-------~~~~~~~~~e~~lk~~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 301 LPLCLPIPRLKPE-------DNEKLEKLIEKQAKNVDDKPK-CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred hHHHHHhhhcCCC-------ChHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 12211111111 11223333322211 111221 1334568999999999999999999 46667777765
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000 317 FNFNFAQAKCALGQYKEAEEMFLLVQ 342 (507)
Q Consensus 317 ~~~~lg~~~~~~g~~~~A~~~~~~~~ 342 (507)
...+|.++.++|+.++|.++|++.+
T Consensus 373 -~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 373 -LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4579999999999999999999875
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.79 E-value=1.3e-16 Score=159.03 Aligned_cols=301 Identities=9% Similarity=-0.061 Sum_probs=220.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH-HHHHHhhhhhhc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI-ALNLKACNTYKL 181 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-a~~~~a~~~~~~ 181 (507)
.+..|.+....|+++.|.+...++....|+..-.+...|.+...+|++++|.++++++.+..|++.. .....+.+.+..
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 4677889999999999999999999998987777788899999999999999999999999999864 344468888899
Q ss_pred cChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCC---ChHHHHHHHHHHHHhhhccCcH
Q psy12000 182 FTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPS---VPQEYILKAVVQVTIGQDTGSR 258 (507)
Q Consensus 182 ~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~---~~~~~~~~~~~~~~~g~~~~~~ 258 (507)
|+++.|...++.+. ...|.++.++..++.+++.+|++++|.+.+.++... ++....
T Consensus 167 ~~~~~Al~~l~~l~-----~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~---------------- 225 (409)
T TIGR00540 167 NELHAARHGVDKLL-----EMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFA---------------- 225 (409)
T ss_pred CCHHHHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH----------------
Confidence 99999999988765 345777788999999999999999999888765422 222110
Q ss_pred HHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcC----CCchHHHHHHHHHHhhCCHHHH
Q psy12000 259 EMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYT----SDDSFNFNFAQAKCALGQYKEA 334 (507)
Q Consensus 259 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~----~~~~~~~~lg~~~~~~g~~~~A 334 (507)
.+.. .........+..+++.+.+..+....| +++.+.+.+|..+...|++++|
T Consensus 226 ----~l~~-------------------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 226 ----DLEQ-------------------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred ----HHHH-------------------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 0000 001111222333334445555544444 4667778889999999999999
Q ss_pred HHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHH
Q psy12000 335 EEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAID 414 (507)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~ 414 (507)
++.++++++..|++.... +. .+.. ......++.+++++
T Consensus 283 ~~~l~~~l~~~pd~~~~~-----------------~~-------------~l~~------------~~~l~~~~~~~~~~ 320 (409)
T TIGR00540 283 QEIIFDGLKKLGDDRAIS-----------------LP-------------LCLP------------IPRLKPEDNEKLEK 320 (409)
T ss_pred HHHHHHHHhhCCCcccch-----------------hH-------------HHHH------------hhhcCCCChHHHHH
Confidence 999999886554432100 00 0000 01111245677788
Q ss_pred HHHHHhhcCCchh--hhHHHHHhhccccccchhHHHHHH--HHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHh
Q psy12000 415 IYKRILLDHKDLL--ALNVYGAMCYYKLDYYDVSQEQVA--MYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVS 490 (507)
Q Consensus 415 ~~~~~l~~~p~~~--~~~~~la~~y~~~g~~~~A~~~~~--~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (507)
.+++.++..|+++ .+...+|+++++.|++++|.+.|+ .+++.+|++.... .++.++..+++.+.|...+++.+..
T Consensus 321 ~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 321 LIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888899988 778888999999999999999998 6788888888755 7788888888888888877776544
No 47
>KOG0495|consensus
Probab=99.78 E-value=9.7e-15 Score=141.94 Aligned_cols=347 Identities=14% Similarity=0.027 Sum_probs=219.9
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
++.-+....+.+-++-|+.+|..+|+.+|....++...+..--.-|..+.-..+|++++..-|..+.-+.+.+......|
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAG 598 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcC
Confidence 56677788888888888888888888888888888877777777888888888888888888888777777777777778
Q ss_pred ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHH--HHHHHHHHHHhhhccCcHHH
Q psy12000 183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQE--YILKAVVQVTIGQDTGSREM 260 (507)
Q Consensus 183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~ 260 (507)
+...|...+..+++ ..|++.+.|+.-..+.....+++.|..+|.+.-...|.. ++-.+.+.-.++.
T Consensus 599 dv~~ar~il~~af~-----~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~------- 666 (913)
T KOG0495|consen 599 DVPAARVILDQAFE-----ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN------- 666 (913)
T ss_pred CcHHHHHHHHHHHH-----hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh-------
Confidence 88888877776642 455566777777777778888888888877654433332 2222222223332
Q ss_pred HHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHh
Q psy12000 261 VKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLL 340 (507)
Q Consensus 261 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 340 (507)
.++|++++..... ..|+..--++.+|.++..+++.+.|.+.|....+..|+..-.+..|+.+-.+.|+.-+|..++++
T Consensus 667 ~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 667 VEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3334443322111 11222223456788888888888888777777777777765666677777778888888888887
Q ss_pred hcccCCCchhhhhhhhcccCccchhhhHHH---------------------HHHHHcCCcHHHHHHHHHhhhcHHHHHHH
Q psy12000 341 VQNEGLKNDYVYISHLTKCSPSRAKTRLSF---------------------HLSHKLGDEKSLMEYHQKLEDSLEEQLCL 399 (507)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~---------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 399 (507)
+.-.+|.+...|+..+ +.-.+.|..+.|- .+.-+-+......+.+++-...+.--+..
T Consensus 745 arlkNPk~~~lwle~I-r~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllai 823 (913)
T KOG0495|consen 745 ARLKNPKNALLWLESI-RMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAI 823 (913)
T ss_pred HHhcCCCcchhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHH
Confidence 7655566665554321 1111222222222 22111122222233333222222222445
Q ss_pred HHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhh
Q psy12000 400 ASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL 464 (507)
Q Consensus 400 ~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~ 464 (507)
+...+...++++|.+.|.++++.+|++-+++.++=--+...|.-+.-.+++..+..-.|.+-.-+
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELW 888 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHH
Confidence 56667777888888888888888888776554443445567777777778888887777776543
No 48
>KOG4340|consensus
Probab=99.77 E-value=3.2e-17 Score=144.96 Aligned_cols=222 Identities=23% Similarity=0.281 Sum_probs=178.0
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCc-cccc-hHHHHHHhcCChh
Q psy12000 10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSR-AKTR-LSFHLSHKLGDEK 87 (507)
Q Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~ 87 (507)
-.+|+|||...+|..|..+|+++-...|......++.++++++.+.+..|+.+.....+.+ ..++ +.+..+.++ ..+
T Consensus 48 SlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkY-se~ 126 (459)
T KOG4340|consen 48 SLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKY-SEG 126 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-ccc
Confidence 3479999999999999999999999999988888999999999999999999888776532 2222 344555555 344
Q ss_pred HHHHHHHHHhhcH----HH-HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 88 SLMEYHQKLEDSL----EE-QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 88 ~~~~~~~~l~~~~----~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
++..+...+...| .+ ..+.|++.++.|+|+.|++-|+.+++...-++-+-+++|.|+++.|+++.|+++.+.++.
T Consensus 127 Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 127 DLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred cCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4444444444333 12 789999999999999999999999999999999999999999999999999999888863
Q ss_pred ----cCCCcH-------------------------HHHHHHhhhhhhccChHHHHHhhHHHH-------------H----
Q psy12000 163 ----QKPTSR-------------------------IALNLKACNTYKLFTSRAAENQLKPIL-------------V---- 196 (507)
Q Consensus 163 ----~~p~~~-------------------------~a~~~~a~~~~~~~~~~~A~~~l~~~~-------------~---- 196 (507)
.+|... .++++++.|.++.++++.|.+.+.++- +
T Consensus 207 RG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~ 286 (459)
T KOG4340|consen 207 RGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM 286 (459)
T ss_pred hhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh
Confidence 455321 268999999999999999998887651 0
Q ss_pred -------------hhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000 197 -------------SILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN 232 (507)
Q Consensus 197 -------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~ 232 (507)
+.+....|.+++..-|+-.+|++..-|+-|.+.+.+
T Consensus 287 n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 287 NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 455566788889999999999999999999887754
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.77 E-value=5.8e-17 Score=167.50 Aligned_cols=161 Identities=13% Similarity=0.043 Sum_probs=90.3
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchh
Q psy12000 286 CMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAK 365 (507)
Q Consensus 286 ~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 365 (507)
.+|.++...|++++|+..++++...+|+++.+++.+|.++...|++++|+..|++++..+|.+...+
T Consensus 343 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~------------- 409 (553)
T PRK12370 343 LLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG------------- 409 (553)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH-------------
Confidence 3455555566666666666666666666666666666666666666666666666654443321100
Q ss_pred hhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhc-CCchhhhHHHHHhhccccccch
Q psy12000 366 TRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD-HKDLLALNVYGAMCYYKLDYYD 444 (507)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~-~p~~~~~~~~la~~y~~~g~~~ 444 (507)
..++.+++..|++++|+..+++++.. .|+.+..+..+|.+|..+|+++
T Consensus 410 -------------------------------~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 410 -------------------------------ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHE 458 (553)
T ss_pred -------------------------------HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHH
Confidence 00011233345566666666666554 3555555566666666666666
Q ss_pred hHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCC
Q psy12000 445 VSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAG 492 (507)
Q Consensus 445 ~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (507)
+|+..++++....|++..+.+.++..+.. .++.+.+.++++++..-
T Consensus 459 eA~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 459 LARKLTKEISTQEITGLIAVNLLYAEYCQ--NSERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhh
Confidence 66666666666666666666655555553 33455555555555443
No 50
>KOG2003|consensus
Probab=99.76 E-value=7.8e-16 Score=143.41 Aligned_cols=413 Identities=15% Similarity=0.068 Sum_probs=245.5
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh-----hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHH---
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPE-----DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFH--- 78 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~--- 78 (507)
-+...+|.+++...+|.+|+++|+.+|.+-|+-. ....++|..+.+.|+|+.|+..|+.+.+..++-..-++
T Consensus 238 ~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i 317 (840)
T KOG2003|consen 238 ILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLII 317 (840)
T ss_pred eeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhh
Confidence 3445678889999999999999999988877632 35677888888899999999888877654443322222
Q ss_pred HHHhcCChhHHHHHHHHHhhc---------------HHH-HHHHHH---HHHH-----hhcHHHHHHHHHHHHH--hCCc
Q psy12000 79 LSHKLGDEKSLMEYHQKLEDS---------------LEE-QLCLAS---IHFL-----RCHYQEAIDIYKRILL--DHKD 132 (507)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~---------------~~~-~~~la~---~~~~-----~g~~~~A~~~~~~~l~--~~p~ 132 (507)
.+...++.+...++..++-+. |.+ +++-+. .+.. ..+-++||-.--++|. +.|+
T Consensus 318 ~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~ 397 (840)
T KOG2003|consen 318 CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD 397 (840)
T ss_pred hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc
Confidence 223344555555555444211 111 222111 1111 1112222222222221 1122
Q ss_pred h--------------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH-HHHHHhhhhhhcc--ChHHHHH
Q psy12000 133 L--------------------LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI-ALNLKACNTYKLF--TSRAAEN 189 (507)
Q Consensus 133 ~--------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-a~~~~a~~~~~~~--~~~~A~~ 189 (507)
. .+.-.+.|--+++.|+++.|+++++-+-+.+..... +.+.+..+.+.+| ++-+|..
T Consensus 398 fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq 477 (840)
T KOG2003|consen 398 FAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ 477 (840)
T ss_pred hhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence 1 123356677788888888888888777665554433 2233333333322 3444443
Q ss_pred hhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHH
Q psy12000 190 QLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQ 269 (507)
Q Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 269 (507)
.-... ...+..++-+..|-|.+-+..|++++|.+.+++....+.. ...+++.+|-..++.+.+++|+..|-
T Consensus 478 yad~a-----ln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas----c~ealfniglt~e~~~~ldeald~f~ 548 (840)
T KOG2003|consen 478 YADIA-----LNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS----CTEALFNIGLTAEALGNLDEALDCFL 548 (840)
T ss_pred HHHHH-----hcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH----HHHHHHHhcccHHHhcCHHHHHHHHH
Confidence 32222 2334445566667777777788888888887765433321 12234455555555566677777664
Q ss_pred HhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCch
Q psy12000 270 LVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKND 349 (507)
Q Consensus 270 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~ 349 (507)
++... ..........++.+|..+.+..+||+++-++.+.-|++|.++..||.+|-+.|+-.+|.+++-..-.--|.+
T Consensus 549 klh~i--l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n- 625 (840)
T KOG2003|consen 549 KLHAI--LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN- 625 (840)
T ss_pred HHHHH--HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc-
Confidence 33211 011223345689999999999999999999999999999999999999999999999999875543332332
Q ss_pred hhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHH-HHHHHHHHhHhhHHHHHHHHHHHhhcCCchhh
Q psy12000 350 YVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQ-LCLASIHFLRCHYQEAIDIYKRILLDHKDLLA 428 (507)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~ 428 (507)
...+.||+.-|....-+++++.++.+..- +.-+...| +..+......|+|++|++.|+......|.+.+
T Consensus 626 ie~iewl~ayyidtqf~ekai~y~ekaal----------iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedld 695 (840)
T KOG2003|consen 626 IETIEWLAAYYIDTQFSEKAINYFEKAAL----------IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLD 695 (840)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHh----------cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchH
Confidence 22345676555555555666655544211 00000111 22333444569999999999999999999988
Q ss_pred hHHHHHhhccccc
Q psy12000 429 LNVYGAMCYYKLD 441 (507)
Q Consensus 429 ~~~~la~~y~~~g 441 (507)
..-.+..+.--+|
T Consensus 696 clkflvri~~dlg 708 (840)
T KOG2003|consen 696 CLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHhcccc
Confidence 6555555555565
No 51
>KOG1173|consensus
Probab=99.75 E-value=3.2e-15 Score=143.44 Aligned_cols=428 Identities=11% Similarity=0.074 Sum_probs=271.6
Q ss_pred HHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHH
Q psy12000 15 CHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQ 94 (507)
Q Consensus 15 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (507)
-+..+.+|..|+-+-+++..+. .+|.-.+.+|++++..|+++.|...+..-.-.......
T Consensus 25 ~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~c------------------- 84 (611)
T KOG1173|consen 25 DALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIAC------------------- 84 (611)
T ss_pred HHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHH-------------------
Confidence 5677889999999999998776 66666789999999999999998876543110000000
Q ss_pred HHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHH------HHhCCch-------------------hHHHHHHHHHHHhcCC
Q psy12000 95 KLEDSLEEQLCLASIHFLRCHYQEAIDIYKRI------LLDHKDL-------------------LALNVYGAMCYYKLDY 149 (507)
Q Consensus 95 ~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~------l~~~p~~-------------------~~~~~~la~~~~~~g~ 149 (507)
.+..+.+++...++++|..+.... +..+|.+ ..+.+..|.+|..+.+
T Consensus 85 --------ryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n 156 (611)
T KOG1173|consen 85 --------RYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDN 156 (611)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhcc
Confidence 223344445555555555444411 1111111 1233445666666667
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc---------c-----ChHHHHHhhHHHHH----h-----hCCCC----
Q psy12000 150 YDVSQEQVAMYLAQKPTSRIALNLKACNTYKL---------F-----TSRAAENQLKPILV----S-----ILPPL---- 202 (507)
Q Consensus 150 ~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~---------~-----~~~~A~~~l~~~~~----~-----~~~~~---- 202 (507)
+++|...|++++..++..-.++..+-.-++.. + ...+-.+.++...+ + .....
T Consensus 157 ~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~s 236 (611)
T KOG1173|consen 157 REEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDES 236 (611)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhh
Confidence 77777777777766666655433221111100 0 00000011111100 0 00000
Q ss_pred ---CCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcc
Q psy12000 203 ---IDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQS 276 (507)
Q Consensus 203 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~ 276 (507)
....++.....+..+...++|.+...+...+ +|-++.-+.+.-..+..+|+. ..-|.-+-++.+..+
T Consensus 237 l~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~---n~Lf~lsh~LV~~yP---- 309 (611)
T KOG1173|consen 237 LIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKS---NKLFLLSHKLVDLYP---- 309 (611)
T ss_pred hhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhccc---chHHHHHHHHHHhCC----
Confidence 0112334445566788899999999888765 455554444433345555543 233444444433322
Q ss_pred cccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhccc--CCCchhhhhh
Q psy12000 277 ECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNE--GLKNDYVYIS 354 (507)
Q Consensus 277 ~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~ 354 (507)
.....|+.+|..|...|++++|..+|.++...+|.-..++...|..+...|..|+|+..|..+-.. +.--...|++
T Consensus 310 --~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg 387 (611)
T KOG1173|consen 310 --SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG 387 (611)
T ss_pred --CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 223346778999999999999999999999999887667788999999999999999999887433 2223345544
Q ss_pred hhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHH---HHHHHHHhHhhHHHHHHHHHHHhh----cC---C
Q psy12000 355 HLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQL---CLASIHFLRCHYQEAIDIYKRILL----DH---K 424 (507)
Q Consensus 355 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~l~~~~~~~~~~~~Ai~~~~~~l~----~~---p 424 (507)
+ -|-..++...|-..+... ++-.|.+++ .+|.+.|..+.|.+|+.+|++++. .. |
T Consensus 388 m---ey~~t~n~kLAe~Ff~~A------------~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~ 452 (611)
T KOG1173|consen 388 M---EYMRTNNLKLAEKFFKQA------------LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI 452 (611)
T ss_pred H---HHHHhccHHHHHHHHHHH------------HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc
Confidence 3 223334444443333221 111122222 356788888999999999999883 22 2
Q ss_pred chhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000 425 DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR 494 (507)
Q Consensus 425 ~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
.......++|.+|.|++++++|+..++++|.+.|.++.++--.|.++..+++.+.|+.-|.+-+-..|-+
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 2334678999999999999999999999999999999999999999999999999999899998888877
No 52
>KOG1840|consensus
Probab=99.74 E-value=1.3e-15 Score=150.55 Aligned_cols=315 Identities=19% Similarity=0.135 Sum_probs=195.3
Q ss_pred HHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHH-------Hh-hcHH---HHHHHHHHHH
Q psy12000 43 EFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQK-------LE-DSLE---EQLCLASIHF 111 (507)
Q Consensus 43 ~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~-~~~~---~~~~la~~~~ 111 (507)
.......+...+.+++|....+.....+....+................+... +. ..|. ....+|.+|.
T Consensus 131 ~hl~~~~~~~~~~l~ea~~~~e~~~~~~~~d~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~ 210 (508)
T KOG1840|consen 131 LHLLAAIQALLLQLDEAEQGQEQAAVTPVKDSLADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYA 210 (508)
T ss_pred HHHHHHHHHHHHHhhhhhcccccccccchhHHHHhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHH
Confidence 44566667777888888877766543322111111111111111111111111 11 1222 2456999999
Q ss_pred HhhcHHHHHHHHHHHHHh--------CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccC
Q psy12000 112 LRCHYQEAIDIYKRILLD--------HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT 183 (507)
Q Consensus 112 ~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~ 183 (507)
.+|+|++|+..+++++.+ .|.-......+|.+|..++++++|+.+|++++.+.-
T Consensus 211 ~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e------------------ 272 (508)
T KOG1840|consen 211 VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE------------------ 272 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH------------------
Confidence 999999999999999998 566666666799999999999999999998874321
Q ss_pred hHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHH
Q psy12000 184 SRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKA 263 (507)
Q Consensus 184 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 263 (507)
.+.....|....++.+|+.+|.++|++++|..++++.
T Consensus 273 -------------~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A------------------------------ 309 (508)
T KOG1840|consen 273 -------------EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA------------------------------ 309 (508)
T ss_pred -------------HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH------------------------------
Confidence 1222333444567889999999999999998888643
Q ss_pred HHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhc-----CCC---chHHHHHHHHHHhhCCHHHHH
Q psy12000 264 AQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYY-----TSD---DSFNFNFAQAKCALGQYKEAE 335 (507)
Q Consensus 264 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~-----~~~---~~~~~~lg~~~~~~g~~~~A~ 335 (507)
.++++++.. ...++.......++.++..++++++|+.+++++.++. +++ .....++|.+|..+|++++|.
T Consensus 310 -l~I~~~~~~-~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~ 387 (508)
T KOG1840|consen 310 -LEIYEKLLG-ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE 387 (508)
T ss_pred -HHHHHHhhc-cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH
Confidence 111111000 0011111112347888999999999999988765432 223 356678999999999999999
Q ss_pred HHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhh-------
Q psy12000 336 EMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCH------- 408 (507)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~------- 408 (507)
++|++++...... .+.- ....-..+.. ++..++..++
T Consensus 388 ~~~k~ai~~~~~~-------~~~~-------------------~~~~~~~l~~----------la~~~~~~k~~~~a~~l 431 (508)
T KOG1840|consen 388 ELYKKAIQILREL-------LGKK-------------------DYGVGKPLNQ----------LAEAYEELKKYEEAEQL 431 (508)
T ss_pred HHHHHHHHHHHhc-------ccCc-------------------ChhhhHHHHH----------HHHHHHHhcccchHHHH
Confidence 9999987432100 0000 0000000000 1112222222
Q ss_pred HHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhc
Q psy12000 409 YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ 456 (507)
Q Consensus 409 ~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~ 456 (507)
|.+|+.+.+.+-...|+....+.+||-+|.++|++++|++..+.++..
T Consensus 432 ~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 432 FEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 566666664444577888888999999999999999999999998853
No 53
>KOG4162|consensus
Probab=99.74 E-value=1e-14 Score=144.71 Aligned_cols=186 Identities=14% Similarity=0.059 Sum_probs=138.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCc--cccc-hHHHHH-HhcCC-
Q psy12000 11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSR--AKTR-LSFHLS-HKLGD- 85 (507)
Q Consensus 11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~--~~~~-~~~~~~-~~~~~- 85 (507)
-+..+...-|+|+.+.+.|++++...-...+.|+.++.++...|.-..|+...++..... +... .++..+ ....+
T Consensus 328 ~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l 407 (799)
T KOG4162|consen 328 HLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERL 407 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhch
Confidence 356667778999999999999987766677899999999999999999999998765422 3222 222222 22222
Q ss_pred --hhHHHHHHHH-Hhhc--------HHHHHHHHHHHHHh-----------hcHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q psy12000 86 --EKSLMEYHQK-LEDS--------LEEQLCLASIHFLR-----------CHYQEAIDIYKRILLDHKDLLALNVYGAMC 143 (507)
Q Consensus 86 --~~~~~~~~~~-l~~~--------~~~~~~la~~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 143 (507)
.+....|..+ +... +..+..+|..|-.+ -...++++.++++++++|.++.+.++++.-
T Consensus 408 ~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq 487 (799)
T KOG4162|consen 408 KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ 487 (799)
T ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 2333333333 2211 12255666655433 335689999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC-CcHHHHHHHhhhhhhccChHHHHHhhHHHHH
Q psy12000 144 YYKLDYYDVSQEQVAMYLAQKP-TSRIALNLKACNTYKLFTSRAAENQLKPILV 196 (507)
Q Consensus 144 ~~~~g~~~~A~~~~~~~l~~~p-~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~ 196 (507)
|...++.+.|....+++++.+| +++.++.++|.+.-..+++.+|+...+..+.
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999954 5567899999998889999999988887653
No 54
>KOG0624|consensus
Probab=99.74 E-value=3.5e-15 Score=134.61 Aligned_cols=312 Identities=14% Similarity=0.038 Sum_probs=211.7
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc---ch-HHHHHHh
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT---RL-SFHLSHK 82 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~---~~-~~~~~~~ 82 (507)
.-.+.+|..++..|++..|+..|..+++.+|++-.+.+..|.+|..+|+-.-|+..+.++.+..+.- ++ ...+..+
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 3456788999999999999999999999999888888888889999999888888888876533321 11 1112223
Q ss_pred cCChhHHH-HHHHHHhhcH----------------HH--HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q psy12000 83 LGDEKSLM-EYHQKLEDSL----------------EE--QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMC 143 (507)
Q Consensus 83 ~~~~~~~~-~~~~~l~~~~----------------~~--~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 143 (507)
.|..+.+. .+...|...| +- +......++..|++..||.....+|++.|.+...+-..|.|
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 33322222 2222232111 11 23344566778999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccH
Q psy12000 144 YYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEH 223 (507)
Q Consensus 144 ~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 223 (507)
|...|+..+|+.-++.+-++..++..+++-.+.++|..|+.+.+...+...+ .++|.+...+- .|-+.++.
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL-----KldpdHK~Cf~----~YKklkKv 269 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECL-----KLDPDHKLCFP----FYKKLKKV 269 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH-----ccCcchhhHHH----HHHHHHHH
Confidence 9999999999999999999999999988888888888888887776665543 23333221110 11111111
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCccccc--chhhhhHHHHHHHhhcCHHHHH
Q psy12000 224 QEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECD--TVPGRQCMASSFFLLRSFKDVI 301 (507)
Q Consensus 224 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~Ai 301 (507)
.+.++..++. .....+.+.++-.+++....+... .......+..|+..-+++.+||
T Consensus 270 ~K~les~e~~----------------------ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 270 VKSLESAEQA----------------------IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred HHHHHHHHHH----------------------HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHH
Confidence 1111111110 001122222322222222211111 1112224678999999999999
Q ss_pred HHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCch
Q psy12000 302 LYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKND 349 (507)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~ 349 (507)
.....++..+|++..++-.++.+|....+|+.|+..|+++++-++.+.
T Consensus 328 qqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 328 QQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 999999999999988888999999999999999999999987665443
No 55
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.74 E-value=1.5e-15 Score=150.57 Aligned_cols=297 Identities=11% Similarity=0.022 Sum_probs=200.8
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHH-HHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000 10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFN-IASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS 88 (507)
Q Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (507)
+.-|...+..|||++|.+...+.-+..+. +..++. .+.+...+|+++.|..++.++.+..+.+...
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~------------ 154 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLP------------ 154 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHH------------
Confidence 45677888889999999888776554333 444444 4666699999999999998876544432100
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
..+..+.++...|++++|+..++++.+.+|+++.++..++.+|...|+|++|++++.++.+..+.++
T Consensus 155 -------------~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~ 221 (398)
T PRK10747 155 -------------VEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE 221 (398)
T ss_pred -------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH
Confidence 0223478999999999999999999999999999999999999999999999999999998776654
Q ss_pred HHHH-HHhhhh---hhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHH
Q psy12000 169 IALN-LKACNT---YKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILK 244 (507)
Q Consensus 169 ~a~~-~~a~~~---~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~ 244 (507)
.... +....+ ............+.+.. +.++...+..+.+...++..+...|+.++|...+.+..+..++.....
T Consensus 222 ~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w-~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~ 300 (398)
T PRK10747 222 EHRAMLEQQAWIGLMDQAMADQGSEGLKRWW-KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVL 300 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH-HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH
Confidence 4221 110110 01000011112222221 112233355678899999999999999999999987654443332211
Q ss_pred HHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHH
Q psy12000 245 AVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQA 324 (507)
Q Consensus 245 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~ 324 (507)
++..+.. ......++.+....++.+ +....+..+|.++...+++++|.++|+++.+..|++.. +..++.+
T Consensus 301 --l~~~l~~-~~~~~al~~~e~~lk~~P------~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~ 370 (398)
T PRK10747 301 --LIPRLKT-NNPEQLEKVLRQQIKQHG------DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADA 370 (398)
T ss_pred --HHhhccC-CChHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHH
Confidence 1221111 122233444444433322 23333556899999999999999999999988888764 3569999
Q ss_pred HHhhCCHHHHHHHHHhhcc
Q psy12000 325 KCALGQYKEAEEMFLLVQN 343 (507)
Q Consensus 325 ~~~~g~~~~A~~~~~~~~~ 343 (507)
+.++|+.++|..+|++.+.
T Consensus 371 ~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 371 LDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 9999999999999998753
No 56
>KOG0548|consensus
Probab=99.73 E-value=1.5e-14 Score=138.28 Aligned_cols=348 Identities=16% Similarity=0.063 Sum_probs=216.5
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccch-HHHHHHhc-------
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRL-SFHLSHKL------- 83 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~------- 83 (507)
..-+|..+|+|++|.+--.+..+++|+=+..|..+|..+.-+|+|++|+..|.+..+.++.+.. .-.++...
T Consensus 42 rsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~ 121 (539)
T KOG0548|consen 42 RSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAAD 121 (539)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhh
Confidence 3556777788888888888888888887778888888888888888888877766543333321 11111000
Q ss_pred --------------------------------------------CChhHHHHHHHHHhh---------------------
Q psy12000 84 --------------------------------------------GDEKSLMEYHQKLED--------------------- 98 (507)
Q Consensus 84 --------------------------------------------~~~~~~~~~~~~l~~--------------------- 98 (507)
.....+..+...+..
T Consensus 122 ~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~ 201 (539)
T KOG0548|consen 122 QLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC 201 (539)
T ss_pred hhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc
Confidence 000111111111100
Q ss_pred ------------cHH---------HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHH
Q psy12000 99 ------------SLE---------EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQV 157 (507)
Q Consensus 99 ------------~~~---------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 157 (507)
.++ ..-.+|...++..+++.|++.|..++..+ .....+.+.|-+|+.+|.+.+++...
T Consensus 202 ~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c 280 (539)
T KOG0548|consen 202 KQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELC 280 (539)
T ss_pred cccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcch
Confidence 000 03356677777777777777777777777 66666666777777777777776666
Q ss_pred HHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCC--
Q psy12000 158 AMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP-- 235 (507)
Q Consensus 158 ~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~-- 235 (507)
...++..-....-+++++ .+...+|..|.+.++++.|+..+.+...
T Consensus 281 ~~a~E~gre~rad~klIa--------------------------------k~~~r~g~a~~k~~~~~~ai~~~~kaLte~ 328 (539)
T KOG0548|consen 281 EKAVEVGRELRADYKLIA--------------------------------KALARLGNAYTKREDYEGAIKYYQKALTEH 328 (539)
T ss_pred HHHHHHhHHHHHHHHHHH--------------------------------HHHHHhhhhhhhHHhHHHHHHHHHHHhhhh
Confidence 654433222221111111 2233377788889999999999987532
Q ss_pred CChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc
Q psy12000 236 SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD 315 (507)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~ 315 (507)
..|+.. .. ....+++........-...+. ....+ .-|..+++.|+|..|+..|.++...+|++.
T Consensus 329 Rt~~~l-------s~-------lk~~Ek~~k~~e~~a~~~pe~-A~e~r-~kGne~Fk~gdy~~Av~~YteAIkr~P~Da 392 (539)
T KOG0548|consen 329 RTPDLL-------SK-------LKEAEKALKEAERKAYINPEK-AEEER-EKGNEAFKKGDYPEAVKHYTEAIKRDPEDA 392 (539)
T ss_pred cCHHHH-------HH-------HHHHHHHHHHHHHHHhhChhH-HHHHH-HHHHHHHhccCHHHHHHHHHHHHhcCCchh
Confidence 222211 11 111222222111110000000 01112 348999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHH
Q psy12000 316 SFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEE 395 (507)
Q Consensus 316 ~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 395 (507)
..+-|+|.||.++|.+..|+...+++++.+|.....|
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy------------------------------------------- 429 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAY------------------------------------------- 429 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHH-------------------------------------------
Confidence 9999999999999999999999999987765322111
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHH
Q psy12000 396 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAM 452 (507)
Q Consensus 396 ~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~ 452 (507)
+..|.+++...+|++|++.|.++++.+|++..+...+..|...+.......+..+.
T Consensus 430 -~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 430 -LRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 12234666678999999999999999999999888888888765444555555555
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.72 E-value=7.3e-16 Score=141.59 Aligned_cols=197 Identities=13% Similarity=0.030 Sum_probs=166.4
Q ss_pred cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000 6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD 85 (507)
Q Consensus 6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (507)
...++.+|.+++..|++++|+..++++++.+|++..++..+|.++...|++++|+..++++....+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------------ 98 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN------------ 98 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------------
Confidence 34567789999999999999999999999999999999999999999999999999998875432221
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000 86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH--KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ 163 (507)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 163 (507)
+..+..+|.++...|++++|+..|++++... |.....+..+|.++...|++++|...+++++..
T Consensus 99 --------------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 99 --------------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred --------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1225678899999999999999999999754 456678889999999999999999999999999
Q ss_pred CCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000 164 KPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL 233 (507)
Q Consensus 164 ~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~ 233 (507)
+|+++.++..++.+++..|++++|...++++.+ ..+..+..+..++.++...|+.++|....+.+
T Consensus 165 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 165 DPQRPESLLELAELYYLRGQYKDARAYLERYQQ-----TYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999988888889999999999999988887653 13445666777888888889999988776543
No 58
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.71 E-value=8.1e-16 Score=146.13 Aligned_cols=124 Identities=11% Similarity=0.124 Sum_probs=85.3
Q ss_pred hcCHHHHHHHHHHHhcCCC----CChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHH
Q psy12000 19 LGQYKQALGIYETLRHLPN----PPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQ 94 (507)
Q Consensus 19 ~g~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (507)
.+..+.++..+.+++...| ..+..|+.+|.++...|++++|+..|+++....+..
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~--------------------- 97 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM--------------------- 97 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---------------------
Confidence 3455667777777775433 224567777777777777777777776664433221
Q ss_pred HHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 95 KLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 95 ~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
+..+..+|.++...|++++|+..|+++++.+|++..++.++|.++...|++++|++.|+++++.+|+++
T Consensus 98 -----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 98 -----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred -----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 223566777777777777777777777777777777777777777777777777777777777777765
No 59
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.71 E-value=4.3e-14 Score=140.23 Aligned_cols=298 Identities=10% Similarity=0.027 Sum_probs=198.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH-HHhhhhhh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYG-AMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN-LKACNTYK 180 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~-~~a~~~~~ 180 (507)
.+..|.+....|++++|.+...+.-.. ++++.+++.+ +.+....|+++.|..++.++.+.+|++..+.. +.+.++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~-~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADH-AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 466788888899999999777664433 3345666665 55559999999999999999999999876543 34788888
Q ss_pred ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcC---CCChHHHH-HHHHHHHHhhhccC
Q psy12000 181 LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLE---PSVPQEYI-LKAVVQVTIGQDTG 256 (507)
Q Consensus 181 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~---~~~~~~~~-~~~~~~~~~g~~~~ 256 (507)
.|+++.|...++.+. ...|.++.+...++.+|.+.|++++|++.+.++. ..++.... +...++..
T Consensus 166 ~g~~~~Al~~l~~~~-----~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~------ 234 (398)
T PRK10747 166 RNENHAARHGVDKLL-----EVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG------ 234 (398)
T ss_pred CCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH------
Confidence 999999999888764 4567788899999999999999999998776653 22222111 11111100
Q ss_pred cHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHH
Q psy12000 257 SREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEE 336 (507)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 336 (507)
+........+-+...++.+..-...|+++.+...+|..+...|+.++|..
T Consensus 235 ------------------------------l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 235 ------------------------------LMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred ------------------------------HHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 00001111222333344455444456677777778888888888888888
Q ss_pred HHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHH
Q psy12000 337 MFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIY 416 (507)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~ 416 (507)
.+++.++..+.+. ... + ......++.+++++..
T Consensus 285 ~L~~~l~~~~~~~-l~~------------------l----------------------------~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 285 IILDGLKRQYDER-LVL------------------L----------------------------IPRLKTNNPEQLEKVL 317 (398)
T ss_pred HHHHHHhcCCCHH-HHH------------------H----------------------------HhhccCCChHHHHHHH
Confidence 8888775332211 000 0 0111225667777777
Q ss_pred HHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHh
Q psy12000 417 KRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVS 490 (507)
Q Consensus 417 ~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (507)
++.++.+|+++.+...+|.++.+.|++++|.+.|+.+++..|+++... .++.++-.+++.+.|..-+++.+..
T Consensus 318 e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~-~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 318 RQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA-WLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777777777777777777777777777777777777777777766633 4666666666677776666666554
No 60
>KOG0550|consensus
Probab=99.70 E-value=1.1e-15 Score=141.31 Aligned_cols=296 Identities=12% Similarity=0.004 Sum_probs=217.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
....|..++++.+|.+|+..|..+|+.+|++...|.+.+.+++..|+|+.|.-..++.+..+|....+....+.++
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~---- 127 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH---- 127 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh----
Confidence 5678899999999999999999999999999999999999999999999999999999998888775433222222
Q ss_pred ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHH
Q psy12000 183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVK 262 (507)
Q Consensus 183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 262 (507)
...++.-+|...++.. .|. ...
T Consensus 128 -----------------------------------~a~~~~i~A~~~~~~~---~~~--------------------~~a 149 (486)
T KOG0550|consen 128 -----------------------------------LALSDLIEAEEKLKSK---QAY--------------------KAA 149 (486)
T ss_pred -----------------------------------hhhHHHHHHHHHhhhh---hhh--------------------HHh
Confidence 2223333333333210 000 000
Q ss_pred HHHHHHHHhCCCcc-cccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhh
Q psy12000 263 AAQALFQLVGSSQS-ECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLV 341 (507)
Q Consensus 263 ~A~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 341 (507)
.|...+..+..+.. .|.-..+...-+.|+.-.|++++|...--.+++.++.+..+++..|.+++-.++.+.|+.+|++.
T Consensus 150 nal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qa 229 (486)
T KOG0550|consen 150 NALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQA 229 (486)
T ss_pred hhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhh
Confidence 01111111111111 11112223345789999999999999888888899888888888999999999999999999999
Q ss_pred cccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhh
Q psy12000 342 QNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILL 421 (507)
Q Consensus 342 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~ 421 (507)
+..+|.....-. ++... +.++.+..-|.-.+..|+|.+|..+|+.++.
T Consensus 230 l~ldpdh~~sk~---------------~~~~~-----------------k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 230 LRLDPDHQKSKS---------------ASMMP-----------------KKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred hccChhhhhHHh---------------HhhhH-----------------HHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 987764321110 00000 0011112224566788999999999999999
Q ss_pred cCCchhh----hHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCC
Q psy12000 422 DHKDLLA----LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAG 492 (507)
Q Consensus 422 ~~p~~~~----~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (507)
.+|++.+ ++.+.|.+..++|+..+|+.....+++++|....++..++..+..+.....|.++|++..+..-
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999854 5678899999999999999999999999999999999999999999999999999999887653
No 61
>KOG2376|consensus
Probab=99.69 E-value=1.7e-13 Score=132.33 Aligned_cols=218 Identities=17% Similarity=0.055 Sum_probs=140.0
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHH
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLME 91 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (507)
-=+.+...|+|++|.+...+++...|++.++....-.+++++++|++|+...++-......+...|+-+.+....+...+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 34566778999999999999999999999999999999999999999998777654322222222444433223333333
Q ss_pred HHHHHh---hcHH-HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12000 92 YHQKLE---DSLE-EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 167 (507)
Q Consensus 92 ~~~~l~---~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 167 (507)
+...+. +.+. .....|.+.|..|+|++|.++|+.+++.+.+..+........-.... -.+. ..+.+...|.+
T Consensus 98 alk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~~--~~q~v~~v~e~ 173 (652)
T KOG2376|consen 98 ALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQVQ--LLQSVPEVPED 173 (652)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhHH--HHHhccCCCcc
Confidence 333332 2222 35667899999999999999999998877655443332221111100 0010 22223344442
Q ss_pred -HHHHHHHhhhhhhccChHHHHHhhHHHHH---hhCCCCCCC--h-----hHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000 168 -RIALNLKACNTYKLFTSRAAENQLKPILV---SILPPLIDV--I-----PESRLNLVIYHLKQEEHQEAFDLIKNL 233 (507)
Q Consensus 168 -~~a~~~~a~~~~~~~~~~~A~~~l~~~~~---~~~~~~~~~--~-----~~~~~~l~~~~~~~~~~~~A~~~l~~~ 233 (507)
-.-++..||++...|++.+|++.+++..+ +.+..-+.. . .-.+..|+.++..+|+..+|...+..+
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 23455578888889999999988888743 111111111 1 125778888999999999999877654
No 62
>KOG4162|consensus
Probab=99.69 E-value=1.7e-12 Score=129.14 Aligned_cols=388 Identities=12% Similarity=0.021 Sum_probs=263.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCcHHHHHHHhhhhh-
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK--PTSRIALNLKACNTY- 179 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~a~~~~a~~~~- 179 (507)
+-.+.......|+|+.+.+.|++++...=...+.|+.++.++...|.-..|+.+++..+... |+++..+.+.+.+..
T Consensus 326 ~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e 405 (799)
T KOG4162|consen 326 FDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIE 405 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHh
Confidence 44566667788999999999999998888888999999999999999999999999999888 888877666544433
Q ss_pred hccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhh-----------ccHHHHHHHHH---hcCCCChHHHHHHH
Q psy12000 180 KLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQ-----------EEHQEAFDLIK---NLEPSVPQEYILKA 245 (507)
Q Consensus 180 ~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~l~---~~~~~~~~~~~~~~ 245 (507)
+.+..++++..-.++++..........+.+++.+|..|-.+ ....+++..++ +++|.+|......+
T Consensus 406 ~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~la 485 (799)
T KOG4162|consen 406 RLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLA 485 (799)
T ss_pred chhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 56677777776666654222233344567888888877542 11334555554 45889997766666
Q ss_pred HHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHH
Q psy12000 246 VVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAK 325 (507)
Q Consensus 246 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~ 325 (507)
..+....+...+.+...++..+ . ..+...+|+.||.++...+++.+|+.+.+.+....|++-........+-
T Consensus 486 lq~A~~R~l~sAl~~~~eaL~l---~-----~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 486 LQYAEQRQLTSALDYAREALAL---N-----RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred HHHHHHHhHHHHHHHHHHHHHh---c-----CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 6666555554444444443331 1 1234677888999999999999999999998887776543333344444
Q ss_pred HhhCCHHHHHHHHHhhccc---CCC----------------------------chhhhhhhhccc--------------C
Q psy12000 326 CALGQYKEAEEMFLLVQNE---GLK----------------------------NDYVYISHLTKC--------------S 360 (507)
Q Consensus 326 ~~~g~~~~A~~~~~~~~~~---~~~----------------------------~~~~~~~~l~~~--------------~ 360 (507)
...|+.++|+......+.. .++ ....++..+... .
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 5567888887766543311 000 001111100000 0
Q ss_pred ccch----------hhhHHHHHHHHcCCcHHHHHHHHHhhhc-HHH---HHHHHHHHHhHhhHHHHHHHHHHHhhcCCch
Q psy12000 361 PSRA----------KTRLSFHLSHKLGDEKSLMEYHQKLEDS-LEE---QLCLASIHFLRCHYQEAIDIYKRILLDHKDL 426 (507)
Q Consensus 361 ~~~~----------~~~~A~~~~~~~~~~~~~~~~~~~l~~~-~~~---~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~ 426 (507)
...+ -|-.+-..+.+.+..+++...+.+.... +.. ....|..+..+|+.++|...|..++..+|+.
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h 717 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH 717 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence 0000 0001222333333333333222222111 100 1112445556689999999999999999999
Q ss_pred hhhHHHHHhhccccccchhHHH--HHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCccCC
Q psy12000 427 LALNVYGAMCYYKLDYYDVSQE--QVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRVRFP 498 (507)
Q Consensus 427 ~~~~~~la~~y~~~g~~~~A~~--~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (507)
+.....+|.++.+.|+..-|.. +++.+++.+|.++.+|..+|.++..+++.++|-.=|+.-++.++-+.++|
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~p 791 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLP 791 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCccc
Confidence 9999999999999999999988 99999999999999999999999999998888888999999999886655
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.69 E-value=4.8e-15 Score=136.10 Aligned_cols=198 Identities=18% Similarity=0.113 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL 181 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~ 181 (507)
.+..+|.++...|++++|+..+++++..+|++..++..+|.++..+|++++|++.+++++..+|.+..++..++.+++..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 37789999999999999999999999999999999999999999999999999999999999999988888888888888
Q ss_pred cChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHH
Q psy12000 182 FTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMV 261 (507)
Q Consensus 182 ~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (507)
|++++|...+..+.. ....+..+..+.++|.++...|++++|...+.+....+|.
T Consensus 113 g~~~~A~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------------------- 167 (234)
T TIGR02521 113 GKYEQAMQQFEQAIE---DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ---------------------- 167 (234)
T ss_pred ccHHHHHHHHHHHHh---ccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----------------------
Confidence 888888888887642 1112334456777888888888888888777653221111
Q ss_pred HHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhh
Q psy12000 262 KAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLV 341 (507)
Q Consensus 262 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 341 (507)
....+..+|.++...|++++|+.+++++....|.++..+..++.++...|+.++|..+.+.+
T Consensus 168 ------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 168 ------------------RPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred ------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 11123357888888999999999888887777766666667888888899999998887765
Q ss_pred c
Q psy12000 342 Q 342 (507)
Q Consensus 342 ~ 342 (507)
.
T Consensus 230 ~ 230 (234)
T TIGR02521 230 Q 230 (234)
T ss_pred H
Confidence 4
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.68 E-value=3.6e-15 Score=141.69 Aligned_cols=202 Identities=12% Similarity=-0.023 Sum_probs=152.1
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE 86 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (507)
...+.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..++++....+..
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~------------- 131 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY------------- 131 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------
Confidence 3467789999999999999999999999999999999999999999999999999999886543332
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000 87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 166 (507)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 166 (507)
...+..+|.+++..|++++|++.|++++..+|+++..... ..+....+++++|+..+++.....+.
T Consensus 132 -------------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~ 197 (296)
T PRK11189 132 -------------NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDK 197 (296)
T ss_pred -------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCc
Confidence 1226789999999999999999999999999998742221 23445678999999999877654332
Q ss_pred cHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCC---CCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHH
Q psy12000 167 SRIALNLKACNTYKLFTSRAAENQLKPILVSILP---PLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQE 240 (507)
Q Consensus 167 ~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~ 240 (507)
....+ +...+..|+...+ ..++.+.+ .+. ...+..+++++++|.++..+|++++|+..+++....+|.+
T Consensus 198 ~~~~~---~~~~~~lg~~~~~-~~~~~~~~-~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 198 EQWGW---NIVEFYLGKISEE-TLMERLKA-GATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred cccHH---HHHHHHccCCCHH-HHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 22221 3344456666444 24443321 111 1233456899999999999999999999998875555433
No 65
>KOG1174|consensus
Probab=99.68 E-value=4.8e-14 Score=130.33 Aligned_cols=306 Identities=14% Similarity=0.068 Sum_probs=218.2
Q ss_pred cchhhHH---HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHh
Q psy12000 6 SLTDAWL---GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHK 82 (507)
Q Consensus 6 ~~~~~~l---g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~ 82 (507)
++...|+ |.++-...-+.-+..++-+.....|++......+|.|++..|++.+|+..|+++...++.+.
T Consensus 195 dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i-------- 266 (564)
T KOG1174|consen 195 DWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV-------- 266 (564)
T ss_pred cHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh--------
Confidence 4445553 44444444555556666677778899999999999999999999999999998754333321
Q ss_pred cCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 83 LGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
+..-..|.++...|+++.-..+-..++........-|+--+...+..+++..|+.+-+++++
T Consensus 267 ------------------~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~ 328 (564)
T KOG1174|consen 267 ------------------EAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID 328 (564)
T ss_pred ------------------hhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc
Confidence 00112345556667777766666666666655555556666667777777778777777777
Q ss_pred cCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChH
Q psy12000 163 QKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQ 239 (507)
Q Consensus 163 ~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~ 239 (507)
.+|.+..++.++|..+...++.++|.-.|..++ .+.|...+.+..|..+|+..|++.||.-..... .+.+..
T Consensus 329 ~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq-----~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~ 403 (564)
T KOG1174|consen 329 SEPRNHEALILKGRLLIALERHTQAVIAFRTAQ-----MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR 403 (564)
T ss_pred cCcccchHHHhccHHHHhccchHHHHHHHHHHH-----hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh
Confidence 777777777777777777777777777777654 244555677888888999999999997665432 344444
Q ss_pred HHHHHH-HHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHH
Q psy12000 240 EYILKA-VVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFN 318 (507)
Q Consensus 240 ~~~~~~-~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~ 318 (507)
...+.| .+++ .....-++|.+++.+... ..|+.+++...+|..+...|+++++|.++++.+...|+.. .+
T Consensus 404 ~LtL~g~~V~~------~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH 474 (564)
T KOG1174|consen 404 SLTLFGTLVLF------PDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LH 474 (564)
T ss_pred hhhhhcceeec------cCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HH
Confidence 433332 2211 112233677777765432 3567778877899999999999999999999998888764 77
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhhcccCCCchhh
Q psy12000 319 FNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYV 351 (507)
Q Consensus 319 ~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 351 (507)
..||.++...+.+.+|+++|..++..+|.+...
T Consensus 475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 475 NHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 889999999999999999999999888765433
No 66
>KOG1125|consensus
Probab=99.68 E-value=1.7e-15 Score=145.92 Aligned_cols=241 Identities=11% Similarity=0.058 Sum_probs=166.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
-+..|+.+.+.|+..+|+-.|+.+++.+|++.++|..||.++...++-..|+..++++++++|++..++..+|..
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVS----- 362 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVS----- 362 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHH-----
Confidence 467899999999999999999999999999999999999999999999999999999999999988766554444
Q ss_pred ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHH
Q psy12000 183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVK 262 (507)
Q Consensus 183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 262 (507)
|..+|.-.+|+..|.+-...+|.. .+........ .+
T Consensus 363 ----------------------------------ytNeg~q~~Al~~L~~Wi~~~p~y------~~l~~a~~~~---~~- 398 (579)
T KOG1125|consen 363 ----------------------------------YTNEGLQNQALKMLDKWIRNKPKY------VHLVSAGENE---DF- 398 (579)
T ss_pred ----------------------------------HhhhhhHHHHHHHHHHHHHhCccc------hhccccCccc---cc-
Confidence 444454455555544311111110 0000000000 00
Q ss_pred HHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcC--CCchHHHHHHHHHHhhCCHHHHHHHHHh
Q psy12000 263 AAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYT--SDDSFNFNFAQAKCALGQYKEAEEMFLL 340 (507)
Q Consensus 263 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 340 (507)
......++ ...+.+-.++|-.+....| .++.+...||.+|.-.|+|++|+.+|+.
T Consensus 399 ---------~~~~s~~~--------------~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~ 455 (579)
T KOG1125|consen 399 ---------ENTKSFLD--------------SSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA 455 (579)
T ss_pred ---------cCCcCCCC--------------HHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence 00000000 0011112233333333334 5667888899999999999999999999
Q ss_pred hcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHh
Q psy12000 341 VQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL 420 (507)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l 420 (507)
++...|.+...|.. ||.+.-...+.++||..|.+++
T Consensus 456 AL~v~Pnd~~lWNR--------------------------------------------LGAtLAN~~~s~EAIsAY~rAL 491 (579)
T KOG1125|consen 456 ALQVKPNDYLLWNR--------------------------------------------LGATLANGNRSEEAISAYNRAL 491 (579)
T ss_pred HHhcCCchHHHHHH--------------------------------------------hhHHhcCCcccHHHHHHHHHHH
Confidence 98776654433311 2223333357899999999999
Q ss_pred hcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCC
Q psy12000 421 LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 459 (507)
Q Consensus 421 ~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~ 459 (507)
+..|.++.+.++||.+|..+|.|++|++.|=.+|.+.+.
T Consensus 492 qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 492 QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999988776
No 67
>KOG1129|consensus
Probab=99.68 E-value=9.8e-16 Score=137.30 Aligned_cols=154 Identities=15% Similarity=0.036 Sum_probs=87.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHH
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLME 91 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (507)
+|.||+.+|.+.+|.+.++..|+..|- ++.+..++.+|.+..+...|+..+....+..+-+-
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V----------------- 290 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV----------------- 290 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh-----------------
Confidence 566666666666666666666666553 35566666666666666666666555443322210
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12000 92 YHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL 171 (507)
Q Consensus 92 ~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~ 171 (507)
.-+...|.++..++++++|.++|+.+++.+|.+.++.--+|.-|+--|+.+-|+.+|++++++--.++.-+
T Consensus 291 ---------T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf 361 (478)
T KOG1129|consen 291 ---------TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELF 361 (478)
T ss_pred ---------hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHH
Confidence 00234555666666666666666666666666666665666666666666666666666666555555444
Q ss_pred HHHhhhhhhccChHHHHHhhH
Q psy12000 172 NLKACNTYKLFTSRAAENQLK 192 (507)
Q Consensus 172 ~~~a~~~~~~~~~~~A~~~l~ 192 (507)
..++.+-+.-++++-+...|+
T Consensus 362 ~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 362 CNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hhHHHHHHhhcchhhhHHHHH
Confidence 434333333334444443333
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.68 E-value=4.2e-15 Score=127.58 Aligned_cols=163 Identities=18% Similarity=0.071 Sum_probs=144.2
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE 86 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (507)
.+++.+|..|+..||+..|...++++|+.+|++..+|.-+|.+|...|+.+.|.+.|+++.+..+.+-
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G------------ 103 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG------------ 103 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc------------
Confidence 45777999999999999999999999999999999999999999999999999999999977555431
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000 87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH--KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 164 (507)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 164 (507)
..+.+.|..++.+|+|++|...|++++... |...+.+-|+|.|.+++|+++.|.++|++.+..+
T Consensus 104 --------------dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 104 --------------DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred --------------chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 115678999999999999999999998653 5677889999999999999999999999999999
Q ss_pred CCcHHHHHHHhhhhhhccChHHHHHhhHHHH
Q psy12000 165 PTSRIALNLKACNTYKLFTSRAAENQLKPIL 195 (507)
Q Consensus 165 p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~ 195 (507)
|+.+.+..-++..++..|++-+|...++...
T Consensus 170 p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 170 PQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred cCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 9999888888888888888888877776653
No 69
>KOG0495|consensus
Probab=99.68 E-value=1.6e-12 Score=126.76 Aligned_cols=462 Identities=11% Similarity=-0.017 Sum_probs=232.5
Q ss_pred hhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-chHHHHHHhcCChhHHH------
Q psy12000 18 HLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT-RLSFHLSHKLGDEKSLM------ 90 (507)
Q Consensus 18 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------ 90 (507)
..+|..+|..+++.+.+.+|.+|..|..-|++--..|++.-|...+.+--+..+.+ .++++..... ..+...
T Consensus 263 dl~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLh-p~d~aK~vvA~A 341 (913)
T KOG0495|consen 263 DLEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLH-PPDVAKTVVANA 341 (913)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcC-ChHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999998865532221211 1333222111 111100
Q ss_pred --------------------------HHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Q psy12000 91 --------------------------EYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCY 144 (507)
Q Consensus 91 --------------------------~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 144 (507)
...+.|+..|.. ..|=..-....+.+.|+-++.++.+..|.+.+.+..++
T Consensus 342 vr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~s-v~LWKaAVelE~~~darilL~rAveccp~s~dLwlAla--- 417 (913)
T KOG0495|consen 342 VRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRS-VRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALA--- 417 (913)
T ss_pred HHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCch-HHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHH---
Confidence 011112222211 11222334456667799999999999999988886555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHH
Q psy12000 145 YKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQ 224 (507)
Q Consensus 145 ~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (507)
++.-|+.|..+++++-+.-|.++.-+..-+.+.-..|+.+.....+...+...-..-....-+.|+.-+...-..|..-
T Consensus 418 -rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~ 496 (913)
T KOG0495|consen 418 -RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVI 496 (913)
T ss_pred -HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChh
Confidence 5677899999999999999999887777777777777776666555543210000000111122222222111111111
Q ss_pred HHHHHHHhc-----CCC-ChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHH
Q psy12000 225 EAFDLIKNL-----EPS-VPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFK 298 (507)
Q Consensus 225 ~A~~~l~~~-----~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 298 (507)
-+-.++..+ +.. ....+..-+..... ..+++.|..+|.....- .|-....|...+..--.-|..+
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k-------~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK-------RPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHh-------cchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHH
Confidence 111111100 000 00011111111111 11222222222111000 0000000111111111122333
Q ss_pred HHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHH---
Q psy12000 299 DVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHK--- 375 (507)
Q Consensus 299 ~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--- 375 (507)
.-..+++++....|..+..++..+..+...|+...|..++..+....|.+..++++. .+....+.+++.|..++.+
T Consensus 568 sl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaa-vKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 568 SLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAA-VKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHH-HHHhhccccHHHHHHHHHHHhc
Confidence 333344444444444444444444444445555555555555443333333333221 1111222223333222211
Q ss_pred -----------------cCCcHHHHHHHHHhh----hcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHH
Q psy12000 376 -----------------LGDEKSLMEYHQKLE----DSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGA 434 (507)
Q Consensus 376 -----------------~~~~~~~~~~~~~l~----~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la 434 (507)
++..++++.++.+-- ....-.+.+|.++-..++.+.|.+.|...++..|+.+.++..++
T Consensus 647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 647 ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA 726 (913)
T ss_pred cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence 111222333322211 11222355667777777777777777777777777777777777
Q ss_pred hhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCc
Q psy12000 435 MCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRV 495 (507)
Q Consensus 435 ~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (507)
.+-.+.|..-.|...++.+.-++|+++..+--.-..-++.++.+.|+....+.+|.-|.+-
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSG 787 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc
Confidence 7777777777777777777777777777654444444444556666667777777766653
No 70
>KOG1127|consensus
Probab=99.66 E-value=4.2e-14 Score=143.45 Aligned_cols=160 Identities=13% Similarity=0.060 Sum_probs=104.3
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-c--hHHHHHHh----
Q psy12000 10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT-R--LSFHLSHK---- 82 (507)
Q Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~--~~~~~~~~---- 82 (507)
-.+|.+|..--|...|.++|+++.+++|.+.+++-..+..|....++++|......+.+..+.. . .+.+.+..
T Consensus 496 ~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea 575 (1238)
T KOG1127|consen 496 AFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEA 575 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCc
Confidence 3466677666677777777877777777777777777777777777777777644433221111 0 11111111
Q ss_pred cCChhHHHHHHHHHhhcHHH---HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12000 83 LGDEKSLMEYHQKLEDSLEE---QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAM 159 (507)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 159 (507)
.+..+.+..+...++-+|.+ +..+|.+|...|+|.-|++.|.++...+|++.-..+..|.+...+|+|.+|+..+..
T Consensus 576 ~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ 655 (1238)
T KOG1127|consen 576 HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGL 655 (1238)
T ss_pred cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11234455556666655554 667778888888888888888888778887777777777777778888888887777
Q ss_pred HHhcCCCcHH
Q psy12000 160 YLAQKPTSRI 169 (507)
Q Consensus 160 ~l~~~p~~~~ 169 (507)
++........
T Consensus 656 ii~~~s~e~~ 665 (1238)
T KOG1127|consen 656 IIYAFSLERT 665 (1238)
T ss_pred HHHHHHHHHH
Confidence 7765444433
No 71
>KOG1156|consensus
Probab=99.65 E-value=8.1e-13 Score=128.99 Aligned_cols=398 Identities=13% Similarity=0.069 Sum_probs=252.1
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE 86 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (507)
...+.-+.-.|..++|.+.++..+.+|+..|.+++..-.+|..+..+|+-++|.........+++...+.
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vC---------- 77 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVC---------- 77 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchh----------
Confidence 3455567778999999999999999999999999999999999999999999999887776544433211
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000 87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 166 (507)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 166 (507)
+-.+|.++...++|++||++|+.++...|+|..++..++.+..++++++.....-.+.++.+|.
T Consensus 78 ----------------wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 78 ----------------WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred ----------------HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 4468889999999999999999999999999999999999999999999999999999999998
Q ss_pred cHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCC---hhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHH
Q psy12000 167 SRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDV---IPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYIL 243 (507)
Q Consensus 167 ~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~ 243 (507)
.-..+.-.|....-.|++..|...++...++.-....+. ..+..+....+....|.+++|.+.+....+...+.
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dk--- 218 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDK--- 218 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHH---
Confidence 876666556666667777777776666543211000000 11233334445556666666666665443321111
Q ss_pred HHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHH
Q psy12000 244 KAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQ 323 (507)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~ 323 (507)
.....-.|..+++.+++++|+..+...+..+|++-.++..+-.
T Consensus 219 -------------------------------------la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 219 -------------------------------------LAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEK 261 (700)
T ss_pred -------------------------------------HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHH
Confidence 0011124667777777777777777777777777655554444
Q ss_pred HHHhhCCHHHHH-HHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHH----------------HcCCcHH-----
Q psy12000 324 AKCALGQYKEAE-EMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSH----------------KLGDEKS----- 381 (507)
Q Consensus 324 ~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~----------------~~~~~~~----- 381 (507)
++..-.+--++. ..|...-+..+...-.-. +......-.++......+. .+-+.++
T Consensus 262 ~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~R--lplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~l 339 (700)
T KOG1156|consen 262 ALGKIKDMLEALKALYAILSEKYPRHECPRR--LPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFL 339 (700)
T ss_pred HHHHHhhhHHHHHHHHHHHhhcCcccccchh--ccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHH
Confidence 554222223333 444433222211110000 0000000000000000000 0000000
Q ss_pred ---HHHHHHHhhhc------------HHHH-----HHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccc
Q psy12000 382 ---LMEYHQKLEDS------------LEEQ-----LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD 441 (507)
Q Consensus 382 ---~~~~~~~l~~~------------~~~~-----~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g 441 (507)
+..+...+... ++.. ..++.-+...|+++.|..+.+.++...|.-+..+..-|.++-..|
T Consensus 340 e~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G 419 (700)
T KOG1156|consen 340 EKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAG 419 (700)
T ss_pred HHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcC
Confidence 00011111111 1111 122333334589999999999999999999999998999999999
Q ss_pred cchhHHHHHHHHHhcCCCchhhhhHHHhhhhh
Q psy12000 442 YYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 473 (507)
Q Consensus 442 ~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~ 473 (507)
..++|...++.+.+.+--|- ++|-+..-|+.
T Consensus 420 ~l~eAa~~l~ea~elD~aDR-~INsKcAKYmL 450 (700)
T KOG1156|consen 420 LLDEAAAWLDEAQELDTADR-AINSKCAKYML 450 (700)
T ss_pred ChHHHHHHHHHHHhccchhH-HHHHHHHHHHH
Confidence 99999999999988863332 33444444443
No 72
>KOG0550|consensus
Probab=99.63 E-value=4.9e-14 Score=130.43 Aligned_cols=273 Identities=15% Similarity=0.042 Sum_probs=188.9
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-chHHHHHHhcCChh
Q psy12000 9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT-RLSFHLSHKLGDEK 87 (507)
Q Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 87 (507)
....|..++...+|..|+..|..+++..|++...|.+.+.+++..|+|++|.-.+++.....+.. +.........+...
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence 34478899999999999999999999999999999999999999999999999887764322110 11111111111111
Q ss_pred HHHHHHH------------HHh---h-----c--H---HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHH
Q psy12000 88 SLMEYHQ------------KLE---D-----S--L---EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAM 142 (507)
Q Consensus 88 ~~~~~~~------------~l~---~-----~--~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 142 (507)
.+.++.. .+. . . | ...+..+.++...|++++|.+.--.+++.++.+.++++..|.
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~ 211 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGL 211 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccc
Confidence 1111111 111 0 0 1 114556778888888888888888888888888888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhcc
Q psy12000 143 CYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEE 222 (507)
Q Consensus 143 ~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (507)
|++..++.++|+..|++.+..+|++..+-.+. . .+..-+++-.-|.-..++|+
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~--------------~-------------~~k~le~~k~~gN~~fk~G~ 264 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLDPDHQKSKSAS--------------M-------------MPKKLEVKKERGNDAFKNGN 264 (486)
T ss_pred ccccccchHHHHHHHhhhhccChhhhhHHhHh--------------h-------------hHHHHHHHHhhhhhHhhccc
Confidence 88888888888888888888888887532110 0 01111345556667788999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHH
Q psy12000 223 HQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVIL 302 (507)
Q Consensus 223 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~ 302 (507)
|.+|.+.+.+....+|...-..+.. +...|.+..+.|+..+|+.
T Consensus 265 y~~A~E~Yteal~idP~n~~~nakl------------------------------------Y~nra~v~~rLgrl~eais 308 (486)
T KOG0550|consen 265 YRKAYECYTEALNIDPSNKKTNAKL------------------------------------YGNRALVNIRLGRLREAIS 308 (486)
T ss_pred hhHHHHHHHHhhcCCccccchhHHH------------------------------------HHHhHhhhcccCCchhhhh
Confidence 9999888876544444321111111 1235666777888888888
Q ss_pred HHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhccc
Q psy12000 303 YLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNE 344 (507)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~ 344 (507)
.-+.++++++.-..++...|.|+..+++|++|.+.|+++...
T Consensus 309 dc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 309 DCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888887766667777888888888888888888888644
No 73
>KOG1129|consensus
Probab=99.63 E-value=2.7e-14 Score=128.14 Aligned_cols=266 Identities=12% Similarity=0.048 Sum_probs=211.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCC---CCCh-----hh--HHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHH
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLP---NPPE-----DT--EFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSH 81 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~---p~~~-----~~--~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~ 81 (507)
.-++++...|...|-...+..++.+ |... +- ...+|.||+++|.+.+|.+.++......+
T Consensus 185 Fey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~---------- 254 (478)
T KOG1129|consen 185 FEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP---------- 254 (478)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC----------
Confidence 4567888999999988777766543 3221 11 24699999999999999998876644322
Q ss_pred hcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000 82 KLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL 161 (507)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 161 (507)
.++.++.|+.+|....+...|+..|.+.+...|.+......+|.++..++++++|.++|+.++
T Consensus 255 -----------------~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl 317 (478)
T KOG1129|consen 255 -----------------HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVL 317 (478)
T ss_pred -----------------chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH
Confidence 133367788999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHH
Q psy12000 162 AQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEY 241 (507)
Q Consensus 162 ~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 241 (507)
+.+|.+.+++--.+..+|..++.+-|...+..+++ ....+|+.+.|+|.+.+--+++|-++..+.+....-.
T Consensus 318 k~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-----mG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat--- 389 (478)
T KOG1129|consen 318 KLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQ-----MGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT--- 389 (478)
T ss_pred hcCCccceeeeeeeeccccCCChHHHHHHHHHHHH-----hcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc---
Confidence 99999999876666678888899999998887653 3445778899999998888888888777654311100
Q ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHH
Q psy12000 242 ILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNF 321 (507)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~l 321 (507)
.+. .....|+++|.+....|++.-|-.+|+-++..++++..++.||
T Consensus 390 --------------------------------~~~--~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNL 435 (478)
T KOG1129|consen 390 --------------------------------QPG--QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNL 435 (478)
T ss_pred --------------------------------Ccc--hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhH
Confidence 000 0112356678888888999999999999999999998899999
Q ss_pred HHHHHhhCCHHHHHHHHHhhcccCC
Q psy12000 322 AQAKCALGQYKEAEEMFLLVQNEGL 346 (507)
Q Consensus 322 g~~~~~~g~~~~A~~~~~~~~~~~~ 346 (507)
|..-.+.|+.++|...+..+.+..|
T Consensus 436 avL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 436 AVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhhcCchHHHHHHHHHhhhhCc
Confidence 9999999999999999998765443
No 74
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=3.3e-13 Score=121.24 Aligned_cols=265 Identities=15% Similarity=0.131 Sum_probs=183.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhh
Q psy12000 141 AMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQ 220 (507)
Q Consensus 141 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (507)
|.-+.-.++.++|+..|-.+++.+|... ++.+.||.+|-+.
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~~d~~t~---------------------------------------e~~ltLGnLfRsR 82 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQEDPETF---------------------------------------EAHLTLGNLFRSR 82 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCchhh---------------------------------------HHHHHHHHHHHhc
Confidence 4444455677777777777776666544 4566777777777
Q ss_pred ccHHHHHHHHHhcC--CCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHH
Q psy12000 221 EEHQEAFDLIKNLE--PSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFK 298 (507)
Q Consensus 221 ~~~~~A~~~l~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 298 (507)
|+.|.|+.+-+.+. |+.+. --+..+...+|+.....+-++.|+.+|..+.+.+.. ...+...|..+|...++|+
T Consensus 83 GEvDRAIRiHQ~L~~spdlT~--~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef--a~~AlqqLl~IYQ~treW~ 158 (389)
T COG2956 83 GEVDRAIRIHQTLLESPDLTF--EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF--AEGALQQLLNIYQATREWE 158 (389)
T ss_pred chHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh--hHHHHHHHHHHHHHhhHHH
Confidence 77777777666553 22222 234455666777777777788888888766542211 1345567889999999999
Q ss_pred HHHHHHHHhhhhcCCCc-----hHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHH
Q psy12000 299 DVILYLSSIKSYYTSDD-----SFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLS 373 (507)
Q Consensus 299 ~Ai~~~~~~~~~~~~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (507)
+||+.-.+..+..+.+. .++-.++..+....+.++|...+++++..++...-
T Consensus 159 KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR----------------------- 215 (389)
T COG2956 159 KAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR----------------------- 215 (389)
T ss_pred HHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee-----------------------
Confidence 99998888887776653 22334666677778899999999888765542210
Q ss_pred HHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhh-hHHHHHhhccccccchhHHHHHHH
Q psy12000 374 HKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLA-LNVYGAMCYYKLDYYDVSQEQVAM 452 (507)
Q Consensus 374 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~-~~~~la~~y~~~g~~~~A~~~~~~ 452 (507)
..+.+|.++...|+|+.|++.++.+++.+|++.. +.-.+-.||.++|+.++....+..
T Consensus 216 ---------------------Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 216 ---------------------ASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred ---------------------hhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 1133456777789999999999999999999864 666788899999999999999999
Q ss_pred HHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCC
Q psy12000 453 YLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGP 493 (507)
Q Consensus 453 ~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (507)
+.+.+|+....+. ++.+--...-.+.|.+-+...++.-|.
T Consensus 275 ~~~~~~g~~~~l~-l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 275 AMETNTGADAELM-LADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HHHccCCccHHHH-HHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 9998887665433 444444434466677777777776664
No 75
>KOG1840|consensus
Probab=99.62 E-value=1.1e-13 Score=137.06 Aligned_cols=255 Identities=19% Similarity=0.122 Sum_probs=176.4
Q ss_pred CCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC-ChhHHHHHHHHHhhcHHH-HHHHHHHHHHh
Q psy12000 36 PNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG-DEKSLMEYHQKLEDSLEE-QLCLASIHFLR 113 (507)
Q Consensus 36 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~-~~~la~~~~~~ 113 (507)
.|.-..+..+++..|...|+|++|+..++.+... +....+ .... ... ...+|.+|..+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~---------l~k~~G~~hl~-----------va~~l~~~a~~y~~~ 254 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRI---------LEKTSGLKHLV-----------VASMLNILALVYRSL 254 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------HHHccCccCHH-----------HHHHHHHHHHHHHHh
Confidence 4555567778999999999999999999877431 000011 0000 011 33589999999
Q ss_pred hcHHHHHHHHHHHHHhC--------CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHhhh
Q psy12000 114 CHYQEAIDIYKRILLDH--------KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ--------KPTSRIALNLKACN 177 (507)
Q Consensus 114 g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~a~~~~a~~ 177 (507)
++|++|+.+|++++.+. |....++.+||.+|.+.|++++|..++++++++ .|.-...+.-.+.+
T Consensus 255 ~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 255 GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI 334 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 99999999999999863 445578899999999999999999999998753 22222345556777
Q ss_pred hhhccChHHHHHhhHHHHHhh---CCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhc
Q psy12000 178 TYKLFTSRAAENQLKPILVSI---LPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQD 254 (507)
Q Consensus 178 ~~~~~~~~~A~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~ 254 (507)
....+.+++|...+++..+.+ .....+..+..+-+||.+|..+|+|++|.+.++++
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a--------------------- 393 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA--------------------- 393 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH---------------------
Confidence 778888888888888765422 22333345667888888999999999988887653
Q ss_pred cCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhh----hhcCCCc---hHHHHHHHHHHh
Q psy12000 255 TGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIK----SYYTSDD---SFNFNFAQAKCA 327 (507)
Q Consensus 255 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~----~~~~~~~---~~~~~lg~~~~~ 327 (507)
++..+...... ....-...-.||..+...+++.+|...|..+. ...|+.+ ..+.|||.+|..
T Consensus 394 ----------i~~~~~~~~~~-~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~ 462 (508)
T KOG1840|consen 394 ----------IQILRELLGKK-DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRA 462 (508)
T ss_pred ----------HHHHHhcccCc-ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 11111110000 00000011247888888899998888776544 2344443 556789999999
Q ss_pred hCCHHHHHHHHHhhc
Q psy12000 328 LGQYKEAEEMFLLVQ 342 (507)
Q Consensus 328 ~g~~~~A~~~~~~~~ 342 (507)
+|++++|+++.++++
T Consensus 463 ~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 463 QGNYEAAEELEEKVL 477 (508)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999999876
No 76
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=1.8e-12 Score=116.61 Aligned_cols=201 Identities=13% Similarity=0.061 Sum_probs=157.0
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH-----HHHHHhhhh
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI-----ALNLKACNT 178 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----a~~~~a~~~ 178 (507)
+-.|.-+....+.++|++.|-++++.+|+..++...||.++-+.|..|.|+.+-+.++ ..|+.+. +..-+|.-+
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-~spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL-ESPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHH
Confidence 4456667778899999999999999999999999999999999999999999987765 4565543 556667778
Q ss_pred hhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhhccCc
Q psy12000 179 YKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYI-LKAVVQVTIGQDTGS 257 (507)
Q Consensus 179 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~-~~~~~~~~~g~~~~~ 257 (507)
+..|-++.|+..|..+. +.+.+.+.+.-.|..+|..+.++++|++..+++....++.+. ..+..+
T Consensus 118 m~aGl~DRAE~~f~~L~-----de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy--------- 183 (389)
T COG2956 118 MAAGLLDRAEDIFNQLV-----DEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY--------- 183 (389)
T ss_pred HHhhhhhHHHHHHHHHh-----cchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH---------
Confidence 88899999999887653 334556678888999999999999999988765333332211 011111
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHH
Q psy12000 258 REMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEM 337 (507)
Q Consensus 258 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 337 (507)
-.||..+....+.+.|+..++++.+.+|+...+...+|.+....|+|++|++.
T Consensus 184 ---------------------------CELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~ 236 (389)
T COG2956 184 ---------------------------CELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEA 236 (389)
T ss_pred ---------------------------HHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHH
Confidence 12566666777888899999999888888877777889999999999999999
Q ss_pred HHhhcccCC
Q psy12000 338 FLLVQNEGL 346 (507)
Q Consensus 338 ~~~~~~~~~ 346 (507)
++.++..++
T Consensus 237 ~e~v~eQn~ 245 (389)
T COG2956 237 LERVLEQNP 245 (389)
T ss_pred HHHHHHhCh
Confidence 998876654
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.59 E-value=1.3e-12 Score=128.53 Aligned_cols=302 Identities=12% Similarity=-0.029 Sum_probs=174.8
Q ss_pred CccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccc-hHH--
Q psy12000 4 ADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPP---EDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTR-LSF-- 77 (507)
Q Consensus 4 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~-~~~-- 77 (507)
.+.-.+..+|.++...|+++.|...+.++.+..|.+ .+..+..+.++...|++++|...++++....|... .+.
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~ 83 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLH 83 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHh
Confidence 344566778999999999999999999988877755 35677789999999999999999988754333321 111
Q ss_pred ----HHHHhcCChhHHHHHHHHH-hhcHH---HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC
Q psy12000 78 ----HLSHKLGDEKSLMEYHQKL-EDSLE---EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY 149 (507)
Q Consensus 78 ----~~~~~~~~~~~~~~~~~~l-~~~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 149 (507)
......+............ ...+. ....+|.++..+|++++|+..+++++..+|+++.++..+|.+++..|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 0011111111111111111 11111 133556666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHH
Q psy12000 150 YDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDL 229 (507)
Q Consensus 150 ~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 229 (507)
+++|+..+++.+...|..+. .....+..++.++..+|++++|+..
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~-----------------------------------~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSM-----------------------------------LRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred HHHHHHHHHhhhhccCCCcc-----------------------------------hhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66666666666655543211 1112456778888888888888888
Q ss_pred HHhcCCCCh--HHHHHH-HH-HHHHhhhccCcH---HHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHH
Q psy12000 230 IKNLEPSVP--QEYILK-AV-VQVTIGQDTGSR---EMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVIL 302 (507)
Q Consensus 230 l~~~~~~~~--~~~~~~-~~-~~~~~g~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~ 302 (507)
+++.....+ ...... .. .....+...... ..++.+....... .+... ........+.++...|+.++|..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~--~~~~~-~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWH--FPDHG-LAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhh--cCccc-chHHHHHHHHHHhcCCCHHHHHH
Confidence 876521111 111111 11 222222222211 2222222211111 01111 11111246788889999999999
Q ss_pred HHHHhhhhcCC---------CchHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000 303 YLSSIKSYYTS---------DDSFNFNFAQAKCALGQYKEAEEMFLLVQN 343 (507)
Q Consensus 303 ~~~~~~~~~~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~ 343 (507)
.++.+...... ........+.++..+|++++|+..+..++.
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88776532211 234456679999999999999999998753
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.58 E-value=3.7e-13 Score=115.77 Aligned_cols=127 Identities=20% Similarity=0.164 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
.+.||.-|..+|++..|...++++|+.+|++..++..+|.+|.+.|+.+.|.+.|+++++++|++...+|..|..++.+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999988877777777777
Q ss_pred ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000 183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN 232 (507)
Q Consensus 183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~ 232 (507)
.+++|...|+.++. ...-+..+..+.|+|.+.++.|+.+.|...+++
T Consensus 118 ~~~eA~q~F~~Al~---~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r 164 (250)
T COG3063 118 RPEEAMQQFERALA---DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR 164 (250)
T ss_pred ChHHHHHHHHHHHh---CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH
Confidence 77777777766532 122233445666666666666666666666654
No 79
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.58 E-value=8.5e-14 Score=128.41 Aligned_cols=170 Identities=15% Similarity=0.116 Sum_probs=126.9
Q ss_pred cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHh
Q psy12000 6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPE---DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHK 82 (507)
Q Consensus 6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~ 82 (507)
.+..+.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++....+....
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~------- 105 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD------- 105 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-------
Confidence 35677789999999999999999999999999876 57899999999999999999999987543332210
Q ss_pred cCChhHHHHHHHHHhhcHHHHHHHHHHHHHh--------hcHHHHHHHHHHHHHhCCchhHHH-----------------
Q psy12000 83 LGDEKSLMEYHQKLEDSLEEQLCLASIHFLR--------CHYQEAIDIYKRILLDHKDLLALN----------------- 137 (507)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~----------------- 137 (507)
.+..++.+|.+++.. |++++|++.|++++..+|++..+.
T Consensus 106 ----------------~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~ 169 (235)
T TIGR03302 106 ----------------ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKE 169 (235)
T ss_pred ----------------hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 001144556666654 899999999999999999876442
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHH
Q psy12000 138 VYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYH 217 (507)
Q Consensus 138 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (507)
..+|.+++..|++++|+..+++++...|+.+ ..+++++.+|.++
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~------------------------------------~~~~a~~~l~~~~ 213 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTP------------------------------------ATEEALARLVEAY 213 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCc------------------------------------chHHHHHHHHHHH
Confidence 2455666666666666666666665555432 2346777888888
Q ss_pred HhhccHHHHHHHHHhcC
Q psy12000 218 LKQEEHQEAFDLIKNLE 234 (507)
Q Consensus 218 ~~~~~~~~A~~~l~~~~ 234 (507)
...|++++|...++.+.
T Consensus 214 ~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 214 LKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 88888888888776653
No 80
>KOG1156|consensus
Probab=99.57 E-value=2.5e-11 Score=118.80 Aligned_cols=408 Identities=14% Similarity=0.021 Sum_probs=247.7
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccc-hHHHHHHh---
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTR-LSFHLSHK--- 82 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~-~~~~~~~~--- 82 (507)
++.-..|-....+|+-++|.......++.++.+.-.|.-+|.++..-++|++|+++|+.|....+.+. ++-.++..
T Consensus 42 eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 42 ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ 121 (700)
T ss_pred hhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45566799999999999999999999999999999999999999999999999999999987655553 44333322
Q ss_pred cCChhH-HHHHHHHHhhcH---HHHHHHHHHHHHhhcHHHHHHHHHHHHHhC---Cch-----hHHHHHHHHHHHhcCCH
Q psy12000 83 LGDEKS-LMEYHQKLEDSL---EEQLCLASIHFLRCHYQEAIDIYKRILLDH---KDL-----LALNVYGAMCYYKLDYY 150 (507)
Q Consensus 83 ~~~~~~-~~~~~~~l~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~-----~~~~~~la~~~~~~g~~ 150 (507)
+++... +..-...++..| ..++..|..+...|++..|..+.+...+.. |+. .........+....|.+
T Consensus 122 mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~ 201 (700)
T KOG1156|consen 122 MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSL 201 (700)
T ss_pred HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccH
Confidence 222222 222223333333 337889999999999999999998887765 443 34455566777888999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHH-HH
Q psy12000 151 DVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAF-DL 229 (507)
Q Consensus 151 ~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~ 229 (507)
++|++.+...-...-+........+.+.+++++.++|...+..++. ..|.+.+-+..+-.++..-.+--+++ ..
T Consensus 202 q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~-----rnPdn~~Yy~~l~~~lgk~~d~~~~lk~l 276 (700)
T KOG1156|consen 202 QKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE-----RNPDNLDYYEGLEKALGKIKDMLEALKAL 276 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh-----hCchhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9998887665433333333445678899999999999988887642 23444344444444443222222333 22
Q ss_pred HHhcC---CC------ChHHHH----HHHHHHH------Hhh------------hccCcHHHHHH-HHHHHHHhCCC---
Q psy12000 230 IKNLE---PS------VPQEYI----LKAVVQV------TIG------------QDTGSREMVKA-AQALFQLVGSS--- 274 (507)
Q Consensus 230 l~~~~---~~------~~~~~~----~~~~~~~------~~g------------~~~~~~~~~~~-A~~~~~~~~~~--- 274 (507)
+.... |. .|-... +.-.+.. ..| +......-+++ +..+...+...
T Consensus 277 y~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f 356 (700)
T KOG1156|consen 277 YAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMF 356 (700)
T ss_pred HHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCC
Confidence 22211 11 000000 0000000 000 00001112222 22222222211
Q ss_pred ------cccccc--hhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCC
Q psy12000 275 ------QSECDT--VPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGL 346 (507)
Q Consensus 275 ------~~~~~~--~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~ 346 (507)
..++.+ ++....++..+-..|+++.|..+++.+....|.-...+...|.++...|+.++|..++..+.+.+.
T Consensus 357 ~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 357 NFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred CcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 011211 223356888899999999999999999888787777777789999999999999999999987665
Q ss_pred CchhhhhhhhcccCccchhhhHHHHHHHHcCCcH-HHHHHHHHhhhcHHHH--HHHHHHHHhHhhHHHHHHHHHHHhhcC
Q psy12000 347 KNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEK-SLMEYHQKLEDSLEEQ--LCLASIHFLRCHYQEAIDIYKRILLDH 423 (507)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~--~~l~~~~~~~~~~~~Ai~~~~~~l~~~ 423 (507)
.+.++. +--++-..+.+..++|.++..+..... .+++.+..+.- -| ..-|..++.+++|-.|++-|..+....
T Consensus 437 aDR~IN-sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqc---mWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~ 512 (700)
T KOG1156|consen 437 ADRAIN-SKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQC---MWFQLEDGEAYLRQNKLGLALKKFHEIEKHY 512 (700)
T ss_pred hhHHHH-HHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhh---HHHhHhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 443332 011211223455566666655544332 22222211110 01 112455666788888888887765533
No 81
>PLN02789 farnesyltranstransferase
Probab=99.56 E-value=9.2e-13 Score=124.99 Aligned_cols=241 Identities=12% Similarity=0.031 Sum_probs=165.6
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccCh
Q psy12000 106 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD-YYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTS 184 (507)
Q Consensus 106 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~ 184 (507)
+-.++...+++++|+..+.++|..+|++..++...+.++..+| ++++++..+++++..+|++..+++.++.+..+.+
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~-- 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG-- 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC--
Confidence 3345677889999999999999999999999999999999998 6799999999999999988765543322211000
Q ss_pred HHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHH
Q psy12000 185 RAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAA 264 (507)
Q Consensus 185 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 264 (507)
+
T Consensus 121 -------------------------------------~------------------------------------------ 121 (320)
T PLN02789 121 -------------------------------------P------------------------------------------ 121 (320)
T ss_pred -------------------------------------c------------------------------------------
Confidence 0
Q ss_pred HHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhccc
Q psy12000 265 QALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNE 344 (507)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~ 344 (507)
..+++++.+++++.+.+|++..++.++|.++...|++++|++.+.++++.
T Consensus 122 ------------------------------~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 122 ------------------------------DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred ------------------------------hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 00123455555666666666666666777777777777777777777665
Q ss_pred CCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCC
Q psy12000 345 GLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK 424 (507)
Q Consensus 345 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p 424 (507)
++.+...|... + + +..+++. +.. .....++++++.++++..+|
T Consensus 172 d~~N~sAW~~R-~------------~-vl~~~~~----------l~~-------------~~~~~e~el~y~~~aI~~~P 214 (320)
T PLN02789 172 DVRNNSAWNQR-Y------------F-VITRSPL----------LGG-------------LEAMRDSELKYTIDAILANP 214 (320)
T ss_pred CCCchhHHHHH-H------------H-HHHhccc----------ccc-------------ccccHHHHHHHHHHHHHhCC
Confidence 55443332110 0 0 0000000 000 00123567888999999999
Q ss_pred chhhhHHHHHhhccc----cccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcC------------------ChHHHHH
Q psy12000 425 DLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF------------------TSRAAEN 482 (507)
Q Consensus 425 ~~~~~~~~la~~y~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~------------------~~~~~~~ 482 (507)
++..++.+++.++.. +++..+|++++.++++..|+++.|+.+++.++-... ..+.|..
T Consensus 215 ~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 294 (320)
T PLN02789 215 RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQA 294 (320)
T ss_pred CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHH
Confidence 999999999999988 566778999999999999999999999999987532 1244666
Q ss_pred HHHHHHHhCCCC
Q psy12000 483 QLKPILVSAGPR 494 (507)
Q Consensus 483 ~~~~~~~~~~~~ 494 (507)
.++.|-..+|=|
T Consensus 295 ~~~~l~~~d~ir 306 (320)
T PLN02789 295 VCSELEVADPMR 306 (320)
T ss_pred HHHHHHhhCcHH
Confidence 666665566644
No 82
>KOG1125|consensus
Probab=99.55 E-value=1.3e-13 Score=133.16 Aligned_cols=218 Identities=12% Similarity=-0.005 Sum_probs=160.3
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccc-hHHHHHHhcCChhH
Q psy12000 10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTR-LSFHLSHKLGDEKS 88 (507)
Q Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 88 (507)
+..|.-++..|+..+|+=+|+.+++.+|.+.++|..||.+...+++-..|+..++++.+.++.+. ++..++..+-+++.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 45788899999999999999999999999999999999999999999999999999988777663 56666655543332
Q ss_pred HHHHH----HHHhhcHHH-HHHHH---------HHHHHhhcHHHHHHHHHHHHHhCC--chhHHHHHHHHHHHhcCCHHH
Q psy12000 89 LMEYH----QKLEDSLEE-QLCLA---------SIHFLRCHYQEAIDIYKRILLDHK--DLLALNVYGAMCYYKLDYYDV 152 (507)
Q Consensus 89 ~~~~~----~~l~~~~~~-~~~la---------~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~ 152 (507)
-.++. .-|...|.- ++..+ .-....-.+..-.++|-++....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 22222 222221110 00000 011111223344566667777777 678888888888888888888
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000 153 SQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN 232 (507)
Q Consensus 153 A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~ 232 (507)
|+..|+.+|..+|++..-++.+|.++..-.+..+|+.++.++. .+.|....+|+|||..++..|.|.+|+..|-.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL-----qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRAL-----QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH-----hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 8888888888888888888888888777777888888887764 45666778899999999999999999988754
No 83
>KOG2376|consensus
Probab=99.55 E-value=2.7e-11 Score=117.33 Aligned_cols=388 Identities=14% Similarity=0.065 Sum_probs=213.2
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc---chHHHHHHhcCCh
Q psy12000 10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT---RLSFHLSHKLGDE 86 (507)
Q Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 86 (507)
+--++|.|++++.++|+..++. .++.+..+....|++++++|+|++|...|+...++.... ....++...
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~---~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~---- 155 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKG---LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV---- 155 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhc---ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----
Confidence 4579999999999999999983 355555678899999999999999999999875432211 111111100
Q ss_pred hHHHH--HHHHHhhcH----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC------c---------hhHHHHHHHHHHH
Q psy12000 87 KSLME--YHQKLEDSL----EEQLCLASIHFLRCHYQEAIDIYKRILLDHK------D---------LLALNVYGAMCYY 145 (507)
Q Consensus 87 ~~~~~--~~~~l~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~---------~~~~~~~la~~~~ 145 (507)
..... ..+.+...+ +..++.|+++...|+|.+|++.+++++.++. + -..+...++.++.
T Consensus 156 ~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 156 AAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred HHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 00011 112222222 2388999999999999999999999965432 1 1246778999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCcHHH-----HHHHhhhhhhccChHHHHHhhHHHHHh---hCC-CC-CCChhHhHHHHHH
Q psy12000 146 KLDYYDVSQEQVAMYLAQKPTSRIA-----LNLKACNTYKLFTSRAAENQLKPILVS---ILP-PL-IDVIPESRLNLVI 215 (507)
Q Consensus 146 ~~g~~~~A~~~~~~~l~~~p~~~~a-----~~~~a~~~~~~~~~~~A~~~l~~~~~~---~~~-~~-~~~~~~~~~~l~~ 215 (507)
.+|+..+|.+++..+++.+|.+... .|+.+..-.+.-....+...++....+ .+. .+ ...-.....|.+.
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred HhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988877641 222222211111111222222211000 000 00 0011124566676
Q ss_pred HHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhc
Q psy12000 216 YHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLR 295 (507)
Q Consensus 216 ~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 295 (507)
+.+-.+..+.+.+....+.+..|....-.-..-...- ......+|++++....+..+. ........++...+.+|
T Consensus 316 L~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~----~~~~~~ka~e~L~~~~~~~p~-~s~~v~L~~aQl~is~g 390 (652)
T KOG2376|consen 316 LALFTNKMDQVRELSASLPGMSPESLFPILLQEATKV----REKKHKKAIELLLQFADGHPE-KSKVVLLLRAQLKISQG 390 (652)
T ss_pred HHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHH----HHHHHhhhHHHHHHHhccCCc-hhHHHHHHHHHHHHhcC
Confidence 7777777777777777766666543211000000000 001223344433322211111 01222233455666666
Q ss_pred CHHHHHHHHH--------HhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhh
Q psy12000 296 SFKDVILYLS--------SIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTR 367 (507)
Q Consensus 296 ~~~~Ai~~~~--------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 367 (507)
+++.|++.+. ++.+... .|.+.-.+-..+++.++-+-|.+.+.++++
T Consensus 391 n~~~A~~il~~~~~~~~ss~~~~~~-~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~------------------------ 445 (652)
T KOG2376|consen 391 NPEVALEILSLFLESWKSSILEAKH-LPGTVGAIVALYYKIKDNDSASAVLDSAIK------------------------ 445 (652)
T ss_pred CHHHHHHHHHHHhhhhhhhhhhhcc-ChhHHHHHHHHHHhccCCccHHHHHHHHHH------------------------
Confidence 6666666555 2222211 122222233445555555555555544431
Q ss_pred HHHHHHHHcCCcHHH-HHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhH
Q psy12000 368 LSFHLSHKLGDEKSL-MEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVS 446 (507)
Q Consensus 368 ~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A 446 (507)
-+......... ...+. ..+.+....|+-++|...++++++.+|++.++...+..+|.++. .++|
T Consensus 446 ----~~~~~~t~s~~l~~~~~----------~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka 510 (652)
T KOG2376|consen 446 ----WWRKQQTGSIALLSLMR----------EAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKA 510 (652)
T ss_pred ----HHHHhcccchHHHhHHH----------HHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHH
Confidence 11111111110 11111 11234445589999999999999999999999888888887774 5666
Q ss_pred HHH
Q psy12000 447 QEQ 449 (507)
Q Consensus 447 ~~~ 449 (507)
+..
T Consensus 511 ~~l 513 (652)
T KOG2376|consen 511 ESL 513 (652)
T ss_pred HHH
Confidence 543
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.54 E-value=8.6e-12 Score=122.74 Aligned_cols=304 Identities=10% Similarity=-0.033 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc---hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhh
Q psy12000 101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKD---LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN 177 (507)
Q Consensus 101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~ 177 (507)
..+..+|.++...|++++|...+.++....|. ..+..+..|.++...|++++|.+.+++++..+|++..++.. +..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 34778899999999999999999999988874 35567778999999999999999999999999999877654 334
Q ss_pred hhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCc
Q psy12000 178 TYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGS 257 (507)
Q Consensus 178 ~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~ 257 (507)
++..|....+.......... .....+....+...+|.++..+|++++|...+++....+|.
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~------------------ 146 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD------------------ 146 (355)
T ss_pred HHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------------
Confidence 44333332222222222111 22333444455666777888888888887777654222221
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCch----HHHHHHHHHHhhCCHHH
Q psy12000 258 REMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDS----FNFNFAQAKCALGQYKE 333 (507)
Q Consensus 258 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~----~~~~lg~~~~~~g~~~~ 333 (507)
...+...+|.++...|++++|+.++++.....|.++. .+..+|.++..+|++++
T Consensus 147 ----------------------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 147 ----------------------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred ----------------------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 1122345789999999999999999998877664332 24468999999999999
Q ss_pred HHHHHHhhcccCC-Cchhhhh-h--hhcc------cCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHH
Q psy12000 334 AEEMFLLVQNEGL-KNDYVYI-S--HLTK------CSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIH 403 (507)
Q Consensus 334 A~~~~~~~~~~~~-~~~~~~~-~--~l~~------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 403 (507)
|+..|++++...+ ....... . ++.. ......+++.+........+. .. ..-.....+...
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~---------~~~~~~~~a~~~ 274 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HG---------LAFNDLHAALAL 274 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-cc---------chHHHHHHHHHH
Confidence 9999999864332 1111100 0 0000 000001111111000000000 00 000001223344
Q ss_pred HhHhhHHHHHHHHHHHhhcC-C--------chhhhHHHHHhhccccccchhHHHHHHHHHhc
Q psy12000 404 FLRCHYQEAIDIYKRILLDH-K--------DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ 456 (507)
Q Consensus 404 ~~~~~~~~Ai~~~~~~l~~~-p--------~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~ 456 (507)
...|+.++|...++.+.... + ....+....|++++..|++++|+..+..++..
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44578888888888775421 1 12345566799999999999999999988864
No 85
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.49 E-value=1.9e-12 Score=119.45 Aligned_cols=177 Identities=14% Similarity=0.065 Sum_probs=133.7
Q ss_pred hhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc---hHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhh--hhh
Q psy12000 281 VPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD---SFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVY--ISH 355 (507)
Q Consensus 281 ~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~ 355 (507)
...+..+|..++..|++++|+..++.+....|+++ .+++.+|.++...|++++|+..|+++++..|.+.... .-.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 34556789999999999999999999998888765 4678899999999999999999999986655332211 001
Q ss_pred hcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhh------
Q psy12000 356 LTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLAL------ 429 (507)
Q Consensus 356 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~------ 429 (507)
+|.++.. . + +.++...|++++|+..|++++..+|++...
T Consensus 113 ~g~~~~~------------~-------------~----------~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 157 (235)
T TIGR03302 113 RGLSNYN------------Q-------------I----------DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR 157 (235)
T ss_pred HHHHHHH------------h-------------c----------ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH
Confidence 1111100 0 0 011222377888999999999888887532
Q ss_pred -----------HHHHHhhccccccchhHHHHHHHHHhcCCCch---hhhhHHHhhhhhcCChHHHHHHHHHHHHhCC
Q psy12000 430 -----------NVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR---IALNLKACNTYKLFTSRAAENQLKPILVSAG 492 (507)
Q Consensus 430 -----------~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (507)
...+|.+|++.|++++|+..++.+++.+|+++ .++..++.++..+++.+.|...++.|....|
T Consensus 158 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 158 MDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 13578889999999999999999999988764 6888999999999999999887777766655
No 86
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.47 E-value=7.9e-13 Score=111.13 Aligned_cols=123 Identities=11% Similarity=0.098 Sum_probs=107.4
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHH
Q psy12000 26 LGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLC 105 (507)
Q Consensus 26 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 105 (507)
...|+++++.+|++ ++.+|.++...|++++|+..|+++....+.. +..+..
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--------------------------~~a~~~ 63 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS--------------------------WRAHIA 63 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--------------------------HHHHHH
Confidence 46889999999975 6678999999999999999999876544332 223678
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhh
Q psy12000 106 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN 177 (507)
Q Consensus 106 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~ 177 (507)
+|.++...|++++|+..|++++..+|+++.+++++|.|+..+|++++|++.|++++...|+++..+..++.+
T Consensus 64 lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 64 LAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999877665544
No 87
>KOG1127|consensus
Probab=99.45 E-value=1.1e-10 Score=119.20 Aligned_cols=224 Identities=12% Similarity=0.016 Sum_probs=165.0
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-chHHHHHHhcCCh
Q psy12000 8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT-RLSFHLSHKLGDE 86 (507)
Q Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 86 (507)
..+|.+..+.+ .+-..|...|=++++++|+-..+|..+|.+|...-+...|..+|.++-+.+... ......+..+-..
T Consensus 461 ~~~w~a~~~~r-K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~ 539 (1238)
T KOG1127|consen 461 SEFWVALGCMR-KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEE 539 (1238)
T ss_pred HHHHHHHHHhh-hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcc
Confidence 34555554444 447889999999999999999999999999999999999999999986643321 2222223232222
Q ss_pred hHHHHHHHHH----hhc-----HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHH
Q psy12000 87 KSLMEYHQKL----EDS-----LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQV 157 (507)
Q Consensus 87 ~~~~~~~~~l----~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 157 (507)
.....+.... ++. ..++..+|-.|...+++..|+..|+.++..+|.+...+..+|.+|...|++..|++.|
T Consensus 540 ~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF 619 (1238)
T KOG1127|consen 540 STWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVF 619 (1238)
T ss_pred ccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhh
Confidence 2222222111 122 2346679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCC--CCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000 158 AMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILP--PLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN 232 (507)
Q Consensus 158 ~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~ 232 (507)
.++...+|.+..+.+..+.+..-.|.+++|...++.++...-. .......+.+...+..+..+|=+.+|.+.+++
T Consensus 620 ~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek 696 (1238)
T KOG1127|consen 620 TKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK 696 (1238)
T ss_pred hhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 9999999999998888898988999999999888876531100 01111234555666666666666666666654
No 88
>PLN02789 farnesyltranstransferase
Probab=99.45 E-value=1.3e-11 Score=117.23 Aligned_cols=187 Identities=9% Similarity=-0.104 Sum_probs=138.4
Q ss_pred HHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhc-cHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHH
Q psy12000 15 CHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLG-MYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYH 93 (507)
Q Consensus 15 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (507)
++...+.+++|+..+.++++.+|.+..+|.+.+.++..+| ++++++..+.++....+++.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny------------------- 106 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY------------------- 106 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch-------------------
Confidence 4666889999999999999999999999999999999998 68999999888765433321
Q ss_pred HHHhhcHHHHHHHHHHHHHhhcH--HHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12000 94 QKLEDSLEEQLCLASIHFLRCHY--QEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL 171 (507)
Q Consensus 94 ~~l~~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~ 171 (507)
..+...+.+....|+. ++++++++++++.+|.+..++.+.+.+...+|++++|++.++++++.+|.+..++
T Consensus 107 -------qaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW 179 (320)
T PLN02789 107 -------QIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAW 179 (320)
T ss_pred -------HHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHH
Confidence 1134455555556653 7789999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhcc---Ch----HHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHh----hccHHHHHHHHHh
Q psy12000 172 NLKACNTYKLF---TS----RAAENQLKPILVSILPPLIDVIPESRLNLVIYHLK----QEEHQEAFDLIKN 232 (507)
Q Consensus 172 ~~~a~~~~~~~---~~----~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~l~~ 232 (507)
+.++.+..+.+ .. +.+.....+.+ ...|.+..+|..++.++.. .++..+|++.+.+
T Consensus 180 ~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI-----~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~ 246 (320)
T PLN02789 180 NQRYFVITRSPLLGGLEAMRDSELKYTIDAI-----LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE 246 (320)
T ss_pred HHHHHHHHhccccccccccHHHHHHHHHHHH-----HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 88887765542 22 22333332332 2345555666666666655 2334445444433
No 89
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.44 E-value=1.1e-12 Score=110.29 Aligned_cols=124 Identities=13% Similarity=0.067 Sum_probs=105.8
Q ss_pred HHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHH
Q psy12000 302 LYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKS 381 (507)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 381 (507)
.+++++.+.+|++ ++.+|.++...|++++|+..|++++..+|.+...+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~----------------------------- 61 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAH----------------------------- 61 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-----------------------------
Confidence 3677777777764 56789999999999999999999987766543222
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCch
Q psy12000 382 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 461 (507)
Q Consensus 382 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~ 461 (507)
..+|.++...|++++|+..|++++..+|+++.+++++|.|+.++|++++|+..|+.+++..|+++
T Consensus 62 ---------------~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~ 126 (144)
T PRK15359 62 ---------------IALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA 126 (144)
T ss_pred ---------------HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 22445667779999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHhhhh
Q psy12000 462 IALNLKACNTY 472 (507)
Q Consensus 462 ~a~~~~~~~~~ 472 (507)
..+..++.+..
T Consensus 127 ~~~~~~~~~~~ 137 (144)
T PRK15359 127 SWSEIRQNAQI 137 (144)
T ss_pred HHHHHHHHHHH
Confidence 99988887654
No 90
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.44 E-value=1.8e-11 Score=128.12 Aligned_cols=231 Identities=10% Similarity=-0.054 Sum_probs=137.6
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000 9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS 88 (507)
Q Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (507)
...+...+...+++++|+..++..++.+|+...+++.+|.++.+.+++.+|..+ .+..
T Consensus 34 ~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~-------------------- 91 (906)
T PRK14720 34 LDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID-------------------- 91 (906)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh--------------------
Confidence 344677777889999999999988999999988999999988888887777654 3222
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
+.....++ .++++|.+.+...|++..+++.+|.||-++|++++|...++++++.+|+++
T Consensus 92 --------------------~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~ 150 (906)
T PRK14720 92 --------------------SFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNP 150 (906)
T ss_pred --------------------hcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccH
Confidence 11222223 344444444444555555555555555555555555555555555555555
Q ss_pred HHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChH---HHHH-H
Q psy12000 169 IALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQ---EYIL-K 244 (507)
Q Consensus 169 ~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~---~~~~-~ 244 (507)
.+++.+|..+... +.+.|...+.++. ..|+..++|.++.+...++-..+|. .+.. .
T Consensus 151 ~aLNn~AY~~ae~-dL~KA~~m~~KAV-------------------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~ 210 (906)
T PRK14720 151 EIVKKLATSYEEE-DKEKAITYLKKAI-------------------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIE 210 (906)
T ss_pred HHHHHHHHHHHHh-hHHHHHHHHHHHH-------------------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHH
Confidence 5555555554444 5555554444332 1244555666666655554322222 1110 0
Q ss_pred HHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHH
Q psy12000 245 AVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQA 324 (507)
Q Consensus 245 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~ 324 (507)
..+....| +.++..+ +.-+=.+|...++|++++.+++.+++.+|.+..+.+.++.+
T Consensus 211 ~ki~~~~~--------~~~~~~~----------------~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~ 266 (906)
T PRK14720 211 RKVLGHRE--------FTRLVGL----------------LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRF 266 (906)
T ss_pred HHHHhhhc--------cchhHHH----------------HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence 00111111 1111111 11244678888999999999999999999888788888888
Q ss_pred HH
Q psy12000 325 KC 326 (507)
Q Consensus 325 ~~ 326 (507)
|.
T Consensus 267 y~ 268 (906)
T PRK14720 267 YK 268 (906)
T ss_pred HH
Confidence 87
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.44 E-value=2.5e-10 Score=114.62 Aligned_cols=307 Identities=14% Similarity=0.076 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL 181 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~ 181 (507)
..+..+.++...|++++|++.+++....-+|...+.-..|.++.++|++++|...+..++..+|++...+..+..+....
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhh
Confidence 35667788899999999999999988888999999999999999999999999999999999999988766554443111
Q ss_pred c-----ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHH-Hh-cCCCChHHHHHHHHHHHHhhhc
Q psy12000 182 F-----TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLI-KN-LEPSVPQEYILKAVVQVTIGQD 254 (507)
Q Consensus 182 ~-----~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l-~~-~~~~~~~~~~~~~~~~~~~g~~ 254 (507)
. ..+.-...++.+.. ..+.. .+-..+...+..-.+|......+ .. +...-|..+...-..+. +.
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~-~yp~s-----~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~---d~ 156 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAE-KYPRS-----DAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYK---DP 156 (517)
T ss_pred cccccccHHHHHHHHHHHHH-hCccc-----cchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHc---Ch
Confidence 1 22333334443321 11110 00111111222223344333322 21 22233332221111111 11
Q ss_pred cCcHHHHH-HHHHHHHHhCCCc---------cc-ccc-hhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHH
Q psy12000 255 TGSREMVK-AAQALFQLVGSSQ---------SE-CDT-VPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFA 322 (507)
Q Consensus 255 ~~~~~~~~-~A~~~~~~~~~~~---------~~-~~~-~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg 322 (507)
.. ...+. ....+........ .. |.+ +++++.+|..|-..|++++|+++++++....|..+..++..|
T Consensus 157 ~K-~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Ka 235 (517)
T PF12569_consen 157 EK-AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKA 235 (517)
T ss_pred hH-HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 10 11111 1222222221110 11 111 345567899999999999999999999999999888999999
Q ss_pred HHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcH-HHHHHHHHhhhcHHHH--HHH
Q psy12000 323 QAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEK-SLMEYHQKLEDSLEEQ--LCL 399 (507)
Q Consensus 323 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~--~~l 399 (507)
.++-+.|++.+|.+.++.+...+..+.++..- .++...+.|+.+.|..+.......+ .....+..+.- .| ..-
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK-~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc---~Wf~~e~ 311 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLADRYINSK-CAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQC---MWFETEC 311 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChhhHHHHHH-HHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHH---HHHHHHH
Confidence 99999999999999999998777655444322 2344456677777766554433222 11100000000 01 123
Q ss_pred HHHHHhHhhHHHHHHHHHHHhhc
Q psy12000 400 ASIHFLRCHYQEAIDIYKRILLD 422 (507)
Q Consensus 400 ~~~~~~~~~~~~Ai~~~~~~l~~ 422 (507)
|..++..|++..|++.|..+.+.
T Consensus 312 a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 312 AEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 56777789999999999888753
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.43 E-value=2.8e-10 Score=114.37 Aligned_cols=262 Identities=15% Similarity=0.005 Sum_probs=169.0
Q ss_pred cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHH-HHHhc-
Q psy12000 6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFH-LSHKL- 83 (507)
Q Consensus 6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~-~~~~~- 83 (507)
.++.++...++...|++++|++.+++....-++...+....|.+++++|++++|...+...++..|.+..++. +....
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 4566777888888888888888888877777777777888888888888888888888777654444432211 11111
Q ss_pred ---C----ChhHHHHHHHHHh------------------------------------hcHHHHHHHHHHHHHhhcHHHHH
Q psy12000 84 ---G----DEKSLMEYHQKLE------------------------------------DSLEEQLCLASIHFLRCHYQEAI 120 (507)
Q Consensus 84 ---~----~~~~~~~~~~~l~------------------------------------~~~~~~~~la~~~~~~g~~~~A~ 120 (507)
. ...........+. ..|.....+-.+|....+..-..
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence 0 0111111111111 11222333444444333333333
Q ss_pred HHHHHHHHh----------------CCch-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccC
Q psy12000 121 DIYKRILLD----------------HKDL-LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT 183 (507)
Q Consensus 121 ~~~~~~l~~----------------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~ 183 (507)
+++...... .|.. .++++.+|+.|-..|++++|++++++++...|+.+..+.++|.|+-+.|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 333333321 1211 36778999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCC--hHH--------HH--HHHHHHHHh
Q psy12000 184 SRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSV--PQE--------YI--LKAVVQVTI 251 (507)
Q Consensus 184 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~--~~~--------~~--~~~~~~~~~ 251 (507)
+.+|...++.+.. ++...-......+..+++.|+.++|...+..+...+ |.. |. -.|.++...
T Consensus 244 ~~~Aa~~~~~Ar~-----LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 244 LKEAAEAMDEARE-----LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HHHHHHHHHHHHh-----CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999998887742 222222233456778999999999999988774322 221 21 246666666
Q ss_pred hhccCcHHHHHHHHHHHHHhC
Q psy12000 252 GQDTGSREMVKAAQALFQLVG 272 (507)
Q Consensus 252 g~~~~~~~~~~~A~~~~~~~~ 272 (507)
|+...+...+....+.|..+.
T Consensus 319 ~~~~~ALk~~~~v~k~f~~~~ 339 (517)
T PF12569_consen 319 GDYGLALKRFHAVLKHFDDFE 339 (517)
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 666655555555555555443
No 93
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.41 E-value=4.3e-12 Score=112.52 Aligned_cols=125 Identities=10% Similarity=0.013 Sum_probs=102.4
Q ss_pred hcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhh
Q psy12000 19 LGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLED 98 (507)
Q Consensus 19 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 98 (507)
.++.++++..++++++.+|++++.|..+|.++...|++++|+..++++....+.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~------------------------- 106 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN------------------------- 106 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------------------
Confidence 4566888889999999999999999999999999999999999988875533322
Q ss_pred cHHHHHHHHHHH-HHhhc--HHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 99 SLEEQLCLASIH-FLRCH--YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 99 ~~~~~~~la~~~-~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
+..+..+|.++ ...|+ +++|+.++++++..+|+++.+++++|.+++..|++++|+..++++++.+|.+..
T Consensus 107 -~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 107 -AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred -HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 22256677764 66677 589999999999999999999999999999999999999999999988776654
No 94
>KOG1915|consensus
Probab=99.39 E-value=3.8e-08 Score=93.40 Aligned_cols=428 Identities=9% Similarity=-0.022 Sum_probs=259.0
Q ss_pred HHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHH
Q psy12000 15 CHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQ 94 (507)
Q Consensus 15 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (507)
--..++++..|...|+++|..+..+..+|...+.+-++.+....|..+..++...-|...
T Consensus 82 wEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-------------------- 141 (677)
T KOG1915|consen 82 WEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-------------------- 141 (677)
T ss_pred HHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH--------------------
Confidence 334577888888888888888888888888888888888888888888877754322210
Q ss_pred HHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q psy12000 95 KLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLK 174 (507)
Q Consensus 95 ~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~ 174 (507)
..++..-.+-...|+...|.++|++=+...|+. .++..--..-.+-+.++.|.++|++++-.+|+... +...
T Consensus 142 ------qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~-wiky 213 (677)
T KOG1915|consen 142 ------QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSN-WIKY 213 (677)
T ss_pred ------HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHH-HHHH
Confidence 112222333445688888999999988888874 34444444556678888999999999888887654 2233
Q ss_pred hhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHH--HHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHH
Q psy12000 175 ACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRL--NLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQV 249 (507)
Q Consensus 175 a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~ 249 (507)
+....+-|+..-+...++.+++... +......+ ..|..-..++.++.|.-+++-. .|++....+.++.+.+
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~----~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~f 289 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLG----DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAF 289 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 4444556666666666665543111 11111122 2233334567778776666532 2443322222322222
Q ss_pred --HhhhccCcHHHHHHHHH------HHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc------
Q psy12000 250 --TIGQDTGSREMVKAAQA------LFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD------ 315 (507)
Q Consensus 250 --~~g~~~~~~~~~~~A~~------~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~------ 315 (507)
..|+.. -++.++- +=..+..++...|++.- .-..-...|+-+.-.+.|+++...-|...
T Consensus 290 EKqfGd~~----gIEd~Iv~KRk~qYE~~v~~np~nYDsWfd---ylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~ 362 (677)
T KOG1915|consen 290 EKQFGDKE----GIEDAIVGKRKFQYEKEVSKNPYNYDSWFD---YLRLEESVGDKDRIRETYERAIANVPPASEKRYWR 362 (677)
T ss_pred HHHhcchh----hhHHHHhhhhhhHHHHHHHhCCCCchHHHH---HHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHH
Confidence 233322 2233322 22334555555555433 23444456788888888887664443221
Q ss_pred -hHHHHHHHHHH---hhCCHHHHHHHHHhhcccCCCchhhhh-hhhcccCccchhhhHHHHHHHHcCCcHHHHHHHH-Hh
Q psy12000 316 -SFNFNFAQAKC---ALGQYKEAEEMFLLVQNEGLKNDYVYI-SHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQ-KL 389 (507)
Q Consensus 316 -~~~~~lg~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~l 389 (507)
-+++.+-.+++ ...+.+.+.+.|+.+++.-|-..+.+. -||..+.+ -.+..+.+.+..++- .+
T Consensus 363 RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~f-----------eIRq~~l~~ARkiLG~AI 431 (677)
T KOG1915|consen 363 RYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQF-----------EIRQLNLTGARKILGNAI 431 (677)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHH-----------HHHHcccHHHHHHHHHHh
Confidence 11222333333 257889999999988876543333321 12211100 011112222222221 13
Q ss_pred hhcHHHHHHHHHHHH--hHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHH
Q psy12000 390 EDSLEEQLCLASIHF--LRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLK 467 (507)
Q Consensus 390 ~~~~~~~~~l~~~~~--~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~ 467 (507)
+.-|.+.+..+.|.+ ..++|+....+|++.++-.|.+.......|..-..+|+.|.|...|.-+++..--+.--+..+
T Consensus 432 G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk 511 (677)
T KOG1915|consen 432 GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK 511 (677)
T ss_pred ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH
Confidence 333444444443333 447999999999999999999999999889999999999999999999997643333334569
Q ss_pred HhhhhhcCC--hHHHHHHHHHHHHhCC
Q psy12000 468 ACNTYKLFT--SRAAENQLKPILVSAG 492 (507)
Q Consensus 468 ~~~~~~~~~--~~~~~~~~~~~~~~~~ 492 (507)
+.+.|++.. ...+++.|+.+++..+
T Consensus 512 aYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 512 AYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 999999885 7788889999998654
No 95
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.35 E-value=1.2e-10 Score=122.03 Aligned_cols=189 Identities=11% Similarity=-0.021 Sum_probs=128.0
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCcc
Q psy12000 283 GRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPS 362 (507)
Q Consensus 283 ~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 362 (507)
+...||.||-++|++++|+..++++++.+|+++.++.++|..|... +.++|++++.+++... ..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~---------------i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF---------------IK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH---------------Hh
Confidence 3456899999999999999999999999999999999999999999 9999999999986421 11
Q ss_pred chhhhHHHHHHHHc---CCc--HHHHHHHHHhhhcHH------HHHHHHHHHH-hHhhHHHHHHHHHHHhhcCCchhhhH
Q psy12000 363 RAKTRLSFHLSHKL---GDE--KSLMEYHQKLEDSLE------EQLCLASIHF-LRCHYQEAIDIYKRILLDHKDLLALN 430 (507)
Q Consensus 363 ~~~~~~A~~~~~~~---~~~--~~~~~~~~~l~~~~~------~~~~l~~~~~-~~~~~~~Ai~~~~~~l~~~p~~~~~~ 430 (507)
.+++..+.++..++ ... +....+.+.+..... -..-+ +-+| ..++|++++.+++.+++.+|++..+.
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l-~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~ 260 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL-YEPYKALEDWDEVIYILKKILEHDNKNNKAR 260 (906)
T ss_pred hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH-HHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence 12222222222221 111 112222222221110 00011 1222 34689999999999999999999998
Q ss_pred HHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCccCCCCccc
Q psy12000 431 VYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRVRFPPGADF 503 (507)
Q Consensus 431 ~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (507)
..++.||. ++|.. ...++.++++- .+.=.-.+...+.+.|.+.+.-.||+-++-+ +|-
T Consensus 261 ~~l~~~y~--~kY~~-~~~~ee~l~~s-----------~l~~~~~~~~~~i~~fek~i~f~~G~yv~H~-~WG 318 (906)
T PRK14720 261 EELIRFYK--EKYKD-HSLLEDYLKMS-----------DIGNNRKPVKDCIADFEKNIVFDTGNFVYHR-TWG 318 (906)
T ss_pred HHHHHHHH--HHccC-cchHHHHHHHh-----------ccccCCccHHHHHHHHHHHeeecCCCEEEEc-CCC
Confidence 88998887 55555 56666666541 1100002457888899999999999988887 664
No 96
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.35 E-value=1.8e-11 Score=102.30 Aligned_cols=118 Identities=16% Similarity=0.115 Sum_probs=105.0
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHH
Q psy12000 27 GIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCL 106 (507)
Q Consensus 27 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 106 (507)
+.|+++++.+|++..+.+.+|.+++..|++++|+..++++....+.+ +..+..+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--------------------------~~~~~~l 57 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN--------------------------SRYWLGL 57 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc--------------------------HHHHHHH
Confidence 46889999999999999999999999999999999998764422221 2236789
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12000 107 ASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA 170 (507)
Q Consensus 107 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a 170 (507)
|.++..+|++++|+.+|++++..+|+++..++.+|.++...|++++|+..++++++.+|++...
T Consensus 58 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 58 AACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 9999999999999999999999999999999999999999999999999999999999998764
No 97
>KOG4340|consensus
Probab=99.33 E-value=8.7e-09 Score=92.12 Aligned_cols=182 Identities=16% Similarity=0.178 Sum_probs=117.6
Q ss_pred HHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHH
Q psy12000 16 HFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQK 95 (507)
Q Consensus 16 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (507)
.....+|..||++...-.+..|.+......+|.||+...+|.+|..++++.....|... .+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~-qY------------------ 80 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE-QY------------------ 80 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH-HH------------------
Confidence 36788999999999999999998888899999999999999999999988654333210 00
Q ss_pred HhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CcHHHHH
Q psy12000 96 LEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD-LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP--TSRIALN 172 (507)
Q Consensus 96 l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~a~~ 172 (507)
.+..|..+++.+.+..|+.....+... |. .....-.-+-+.+..+++..+..+.++ -| +.....+
T Consensus 81 -------rlY~AQSLY~A~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ----lp~en~Ad~~i 148 (459)
T KOG4340|consen 81 -------RLYQAQSLYKACIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQ----LPSENEADGQI 148 (459)
T ss_pred -------HHHHHHHHHHhcccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHh----ccCCCccchhc
Confidence 233455666667777776666554432 21 122222334455566666666554443 34 2233345
Q ss_pred HHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000 173 LKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL 233 (507)
Q Consensus 173 ~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~ 233 (507)
-.||+.++.|+++.|..-|+... +.....|-..++++.++.+.|+|+.|++...++
T Consensus 149 n~gCllykegqyEaAvqkFqaAl-----qvsGyqpllAYniALaHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 149 NLGCLLYKEGQYEAAVQKFQAAL-----QVSGYQPLLAYNLALAHYSSRQYASALKHISEI 204 (459)
T ss_pred cchheeeccccHHHHHHHHHHHH-----hhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 55677777777777766665543 233344455667777777777777777666543
No 98
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=2.6e-09 Score=99.44 Aligned_cols=293 Identities=15% Similarity=0.079 Sum_probs=185.1
Q ss_pred HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHH
Q psy12000 13 GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEY 92 (507)
Q Consensus 13 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (507)
|-.-+..|+|.+|.+...+.-+..+...-.+..-++..-++|+++.|-.++.++.+.+.+..
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~------------------ 152 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT------------------ 152 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch------------------
Confidence 34444556666666666655544444444444555555556666666555555433211110
Q ss_pred HHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-HH-
Q psy12000 93 HQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR-IA- 170 (507)
Q Consensus 93 ~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~a- 170 (507)
....+..+.+...+|+++.|..-..+++...|.++.+......+|...|+|.+...++.++-+..--+. .+
T Consensus 153 -------l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 153 -------LAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred -------HHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 011566788999999999999999999999999999999999999999999999999988876432221 11
Q ss_pred -HHHHhhh--hhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHH
Q psy12000 171 -LNLKACN--TYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVV 247 (507)
Q Consensus 171 -~~~~a~~--~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~ 247 (507)
+...++. +-+..+-..+....+.. +-.+......|+....++.-+++.|++++|.+.+.+..+..-+..+.. .+
T Consensus 226 ~le~~a~~glL~q~~~~~~~~gL~~~W--~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~-~~ 302 (400)
T COG3071 226 RLEQQAWEGLLQQARDDNGSEGLKTWW--KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR-LI 302 (400)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHH--HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH-HH
Confidence 1111211 11111222222211111 111222234566777788889999999999998887654433322111 11
Q ss_pred HHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHh
Q psy12000 248 QVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCA 327 (507)
Q Consensus 248 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~ 327 (507)
-.-...+...-.+.++...+..++.+ .....||..+++.+.|.+|-++|+.+.+..|+...+ ..+|.++.+
T Consensus 303 --~~l~~~d~~~l~k~~e~~l~~h~~~p------~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~-~~la~~~~~ 373 (400)
T COG3071 303 --PRLRPGDPEPLIKAAEKWLKQHPEDP------LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDY-AELADALDQ 373 (400)
T ss_pred --hhcCCCCchHHHHHHHHHHHhCCCCh------hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhH-HHHHHHHHH
Confidence 11112223334445555555555443 123468999999999999999999999888877654 559999999
Q ss_pred hCCHHHHHHHHHhhc
Q psy12000 328 LGQYKEAEEMFLLVQ 342 (507)
Q Consensus 328 ~g~~~~A~~~~~~~~ 342 (507)
+|+..+|.+.++.++
T Consensus 374 ~g~~~~A~~~r~e~L 388 (400)
T COG3071 374 LGEPEEAEQVRREAL 388 (400)
T ss_pred cCChHHHHHHHHHHH
Confidence 999999999999875
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.27 E-value=1.7e-10 Score=102.39 Aligned_cols=125 Identities=10% Similarity=-0.021 Sum_probs=87.2
Q ss_pred hcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHH
Q psy12000 294 LRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLS 373 (507)
Q Consensus 294 ~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (507)
.++.++++..+++....+|++...++.+|.+|...|++++|+..|++++...|.+...+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~--------------------- 110 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELY--------------------- 110 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH---------------------
Confidence 56667777777777777777777777778888788888888888877766554432222
Q ss_pred HHcCCcHHHHHHHHHhhhcHHHHHHHHHHH-HhHhh--HHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHH
Q psy12000 374 HKLGDEKSLMEYHQKLEDSLEEQLCLASIH-FLRCH--YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQV 450 (507)
Q Consensus 374 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~-~~~~~--~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~ 450 (507)
..++.+. +..|+ +++|+..++++++.+|+++.+++.+|.+++++|++++|+..|
T Consensus 111 -----------------------~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 111 -----------------------AALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred -----------------------HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 1223343 34455 477888888888888877777777788888888888888888
Q ss_pred HHHHhcCCCchh
Q psy12000 451 AMYLAQKPTSRI 462 (507)
Q Consensus 451 ~~~l~~~P~~~~ 462 (507)
+++++..|.+..
T Consensus 168 ~~aL~l~~~~~~ 179 (198)
T PRK10370 168 QKVLDLNSPRVN 179 (198)
T ss_pred HHHHhhCCCCcc
Confidence 887777766554
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.25 E-value=9.9e-11 Score=109.81 Aligned_cols=248 Identities=19% Similarity=0.210 Sum_probs=133.3
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh----
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNP-PEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE---- 86 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 86 (507)
--+.+|..|+|..++..++ ....+|. ..+..+++.++++.+|+++..+....... ++.......++..+..+
T Consensus 7 ~vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhHHHHHHHHHHHhCccchH
Confidence 3456888999999998887 3333332 33567899999999999998776654433 22222222222222111
Q ss_pred hHHHHHHHHHhhcH-----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000 87 KSLMEYHQKLEDSL-----EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL 161 (507)
Q Consensus 87 ~~~~~~~~~l~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 161 (507)
..+....+.+.+.. --.+..|.++...|++++|++.+.+. ++.+.......+++++++++.|.+.++.+.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11111111111110 01334445555556666665555432 334444445555566666666666555555
Q ss_pred hcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhh--ccHHHHHHHHHhcCCCChH
Q psy12000 162 AQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQ--EEHQEAFDLIKNLEPSVPQ 239 (507)
Q Consensus 162 ~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~l~~~~~~~~~ 239 (507)
+.+.+....... ++| +.+.. +++.+|+-.|+++....+.
T Consensus 159 ~~~eD~~l~qLa----------------------------------~aw-----v~l~~g~e~~~~A~y~f~El~~~~~~ 199 (290)
T PF04733_consen 159 QIDEDSILTQLA----------------------------------EAW-----VNLATGGEKYQDAFYIFEELSDKFGS 199 (290)
T ss_dssp CCSCCHHHHHHH----------------------------------HHH-----HHHHHTTTCCCHHHHHHHHHHCCS--
T ss_pred hcCCcHHHHHHH----------------------------------HHH-----HHHHhCchhHHHHHHHHHHHHhccCC
Confidence 544443321111 111 11111 2344454444443221111
Q ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHH
Q psy12000 240 EYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNF 319 (507)
Q Consensus 240 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~ 319 (507)
+......+|.+++.+|+|++|.+.+..+...+|+++.++.
T Consensus 200 ----------------------------------------t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 200 ----------------------------------------TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp ----------------------------------------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred ----------------------------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 1112235789999999999999999999999999999999
Q ss_pred HHHHHHHhhCCH-HHHHHHHHhhcccCC
Q psy12000 320 NFAQAKCALGQY-KEAEEMFLLVQNEGL 346 (507)
Q Consensus 320 ~lg~~~~~~g~~-~~A~~~~~~~~~~~~ 346 (507)
|++.+...+|+. +.+.+++.++....|
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 999999999998 556666666654443
No 101
>KOG1130|consensus
Probab=99.25 E-value=2e-10 Score=106.63 Aligned_cols=278 Identities=16% Similarity=0.071 Sum_probs=165.9
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCCchh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000 105 CLASIHFLRCHYQEAIDIYKRILLDHKDLL----ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180 (507)
Q Consensus 105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~ 180 (507)
.-|.-+++.|++...+..|+.+++...++. .+|..||.+|+.+++|++|+++-..=+ .. +. .
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDl-------tl----ar---~ 87 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDL-------TL----AR---L 87 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhH-------HH----HH---H
Confidence 356778999999999999999999987653 567789999999999999988643211 10 00 0
Q ss_pred ccC-hHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCC---------CChHHHHHHHHHHHH
Q psy12000 181 LFT-SRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP---------SVPQEYILKAVVQVT 250 (507)
Q Consensus 181 ~~~-~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~---------~~~~~~~~~~~~~~~ 250 (507)
+|+ ..+ ...--|||..+-..|.|++|+.++.+-.. ....+++..|.+|..
T Consensus 88 lgdklGE--------------------AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYha 147 (639)
T KOG1130|consen 88 LGDKLGE--------------------AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHA 147 (639)
T ss_pred hcchhcc--------------------ccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhh
Confidence 010 000 01123455555556666666554432100 011223334444444
Q ss_pred hhhcc-------------CcHHHHHHHHHHHHHhCC----CcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhh----
Q psy12000 251 IGQDT-------------GSREMVKAAQALFQLVGS----SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKS---- 309 (507)
Q Consensus 251 ~g~~~-------------~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~---- 309 (507)
.|... +....++.|.++|..-.+ .......-.++-.||++|+..|+|+.||..-+.-+.
T Consensus 148 kGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e 227 (639)
T KOG1130|consen 148 KGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE 227 (639)
T ss_pred cccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH
Confidence 44321 123456677777642111 000000011223578888899999999876553322
Q ss_pred hcCC--CchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHH
Q psy12000 310 YYTS--DDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQ 387 (507)
Q Consensus 310 ~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 387 (507)
+... .-.++.|+|.++.-.|+++.|+++|++.+.. +.++++..
T Consensus 228 fGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L----------------------------Aielg~r~------- 272 (639)
T KOG1130|consen 228 FGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL----------------------------AIELGNRT------- 272 (639)
T ss_pred hhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH----------------------------HHHhcchh-------
Confidence 2211 1246678899999999999999999875321 11111111
Q ss_pred HhhhcHHHH--HHHHHHHHhHhhHHHHHHHHHHHhhc------CCchhhhHHHHHhhccccccchhHHHHHHHHHhc
Q psy12000 388 KLEDSLEEQ--LCLASIHFLRCHYQEAIDIYKRILLD------HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ 456 (507)
Q Consensus 388 ~l~~~~~~~--~~l~~~~~~~~~~~~Ai~~~~~~l~~------~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~ 456 (507)
++.+ ++++..++...+|++||.++.+-+.+ .-......+.+|.+|-.+|..++|+.+.+..+++
T Consensus 273 -----vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 273 -----VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred -----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 1222 45677888888899999998876542 2334556778899999999999998877766543
No 102
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.24 E-value=1.1e-10 Score=97.42 Aligned_cols=120 Identities=19% Similarity=0.154 Sum_probs=100.6
Q ss_pred HHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHH
Q psy12000 303 YLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSL 382 (507)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 382 (507)
.++++...+|++....+.+|.++...|++++|+..|++++..++.+...+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~------------------------------ 54 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYW------------------------------ 54 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHH------------------------------
Confidence 46677778888877888899999999999999999999876554332211
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchh
Q psy12000 383 MEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 462 (507)
Q Consensus 383 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~ 462 (507)
..++.+++..|++++|+..|++++..+|+++..++.+|.+|...|++++|+..++.+++.+|+++.
T Consensus 55 --------------~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 55 --------------LGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 223456667799999999999999999999999999999999999999999999999999999988
Q ss_pred hhhH
Q psy12000 463 ALNL 466 (507)
Q Consensus 463 a~~~ 466 (507)
...+
T Consensus 121 ~~~~ 124 (135)
T TIGR02552 121 YSEL 124 (135)
T ss_pred HHHH
Confidence 6443
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.22 E-value=2.8e-10 Score=106.80 Aligned_cols=160 Identities=18% Similarity=0.124 Sum_probs=95.7
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchh
Q psy12000 286 CMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAK 365 (507)
Q Consensus 286 ~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 365 (507)
..|.++...|++++|++.+.+. .+.........+|...++++.|.+.++.+.+.+.++...
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~-------------- 167 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILT-------------- 167 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHH--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHH--------------
Confidence 3567788888899888866554 233444556788888899999988888775543221111
Q ss_pred hhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHh--hHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccc
Q psy12000 366 TRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRC--HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYY 443 (507)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~--~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~ 443 (507)
++..+|+.+..| ++++|.-+|+++.+..|.++.+...+|.|+..+|++
T Consensus 168 ------------------------------qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~ 217 (290)
T PF04733_consen 168 ------------------------------QLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHY 217 (290)
T ss_dssp ------------------------------HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-H
T ss_pred ------------------------------HHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCH
Confidence 122233444433 566677777776666666666666666677777777
Q ss_pred hhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCCh-HHHHHHHHHHHHhCCCC
Q psy12000 444 DVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTS-RAAENQLKPILVSAGPR 494 (507)
Q Consensus 444 ~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 494 (507)
++|.+.++++++.+|+++.++-.+..+..-+++. ...++.+..+....|.|
T Consensus 218 ~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 218 EEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 7777777777777777666655555554444443 44555566666666665
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.22 E-value=3e-10 Score=118.34 Aligned_cols=140 Identities=9% Similarity=-0.070 Sum_probs=120.7
Q ss_pred ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000 5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG 84 (507)
Q Consensus 5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (507)
+.++.+.+|.+....|.+++|...++.+++..|++..++..++.++.+++++++|...++++....+.+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~----------- 153 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS----------- 153 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC-----------
Confidence 356778899999999999999999999999999999999999999999999999999988886654443
Q ss_pred ChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000 85 DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 164 (507)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 164 (507)
...++.+|.++...|+|++|+.+|++++..+|+++.++..+|.++..+|+.++|...|+++++..
T Consensus 154 ---------------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 154 ---------------AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred ---------------HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 22366788899999999999999999999999999999999999999999999999999999876
Q ss_pred CCcHHH
Q psy12000 165 PTSRIA 170 (507)
Q Consensus 165 p~~~~a 170 (507)
.+-...
T Consensus 219 ~~~~~~ 224 (694)
T PRK15179 219 GDGARK 224 (694)
T ss_pred CcchHH
Confidence 655554
No 105
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.21 E-value=1.4e-09 Score=96.05 Aligned_cols=177 Identities=14% Similarity=0.021 Sum_probs=146.3
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHH
Q psy12000 24 QALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQ 103 (507)
Q Consensus 24 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (507)
.+...+-.....+|.+.++ ..++..++..|+-+.+..+..++....+.. ++..
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d--------------------------~~ll 103 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD--------------------------RELL 103 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc--------------------------HHHH
Confidence 3555555556678888888 888888999988888887776643222211 1113
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccC
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT 183 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~ 183 (507)
..+|......|+|.+|+..++++....|++..++..+|.+|.+.|++++|..-|.++++..|..+...+.++.+++-.|+
T Consensus 104 ~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 104 AAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 34788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000 184 SRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN 232 (507)
Q Consensus 184 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~ 232 (507)
.+.|+..+.... ...+....+..||+.+...+|++++|.++..+
T Consensus 184 ~~~A~~lll~a~-----l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 184 LEDAETLLLPAY-----LSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHHH-----hCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 999999888763 23344567889999999999999999887754
No 106
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.21 E-value=6e-08 Score=90.50 Aligned_cols=298 Identities=14% Similarity=0.070 Sum_probs=195.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH-HHHHhhhhhhc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA-LNLKACNTYKL 181 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a-~~~~a~~~~~~ 181 (507)
...-|.+-...|+|.+|.....+.-+..+...-.+..-+.+--++|+++.|-.++.++-+..|++..+ ....+.+....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 44566777788999999999888666666555566666778889999999999999998886666553 45567788888
Q ss_pred cChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCCh---HHHHHHHHHHHHhhhccCcH
Q psy12000 182 FTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVP---QEYILKAVVQVTIGQDTGSR 258 (507)
Q Consensus 182 ~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~---~~~~~~~~~~~~~g~~~~~~ 258 (507)
|++..|..-+.++. ...|.++++..-...+|++.|++++...++.++.+... .+..
T Consensus 167 ~d~~aA~~~v~~ll-----~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~---------------- 225 (400)
T COG3071 167 RDYPAARENVDQLL-----EMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA---------------- 225 (400)
T ss_pred CCchhHHHHHHHHH-----HhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH----------------
Confidence 88888888777664 35677778777777899999999999988876533211 1100
Q ss_pred HHHH-HHHH-HHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHH
Q psy12000 259 EMVK-AAQA-LFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEE 336 (507)
Q Consensus 259 ~~~~-~A~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 336 (507)
.++ +|.. +++...+. +.-+.=....+..-..-.+++.....++.-+...|++++|.+
T Consensus 226 -~le~~a~~glL~q~~~~--------------------~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~ 284 (400)
T COG3071 226 -RLEQQAWEGLLQQARDD--------------------NGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQE 284 (400)
T ss_pred -HHHHHHHHHHHHHHhcc--------------------ccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHH
Confidence 000 0110 11111000 000000123333322233456666678888899999999999
Q ss_pred HHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHH
Q psy12000 337 MFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIY 416 (507)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~ 416 (507)
+.+.+++...++. .. .++..+ .-++...=++..
T Consensus 285 ~i~~~Lk~~~D~~-L~------------------~~~~~l----------------------------~~~d~~~l~k~~ 317 (400)
T COG3071 285 IIEDALKRQWDPR-LC------------------RLIPRL----------------------------RPGDPEPLIKAA 317 (400)
T ss_pred HHHHHHHhccChh-HH------------------HHHhhc----------------------------CCCCchHHHHHH
Confidence 9998876543322 00 011110 013455556666
Q ss_pred HHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHh
Q psy12000 417 KRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVS 490 (507)
Q Consensus 417 ~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (507)
++.++..|+++.+++.+|..|++.+.|.+|.+.++.+++..|+... ++.++.++-.++....|+..+++.+-.
T Consensus 318 e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 318 EKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD-YAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7777778888888888888888888888888888888877776544 466788888777777777777766643
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.19 E-value=7.9e-08 Score=106.74 Aligned_cols=384 Identities=12% Similarity=-0.021 Sum_probs=202.2
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHh---cCChhHHHHHHHHHhh-----cHHHHHHHHHHHHH
Q psy12000 41 DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHK---LGDEKSLMEYHQKLED-----SLEEQLCLASIHFL 112 (507)
Q Consensus 41 ~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~-----~~~~~~~la~~~~~ 112 (507)
..+...+..+...|++.+|+..+..+.+......++...+.. .+....+..+...+.. .+......+.++..
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 445566777888899998888887775533222222222211 2222333333333321 12224567888888
Q ss_pred hhcHHHHHHHHHHHHHhCCc---------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-----HHHHHHhhhh
Q psy12000 113 RCHYQEAIDIYKRILLDHKD---------LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR-----IALNLKACNT 178 (507)
Q Consensus 113 ~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~a~~~~a~~~ 178 (507)
.|++++|...+.++....+. ...+...+|.++...|++++|...+++++...|... .+....+.++
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 99999999999888664321 234455678888999999999999999887544432 2445567777
Q ss_pred hhccChHHHHHhhHHHHHhhCCCCCCC--hhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccC
Q psy12000 179 YKLFTSRAAENQLKPILVSILPPLIDV--IPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTG 256 (507)
Q Consensus 179 ~~~~~~~~A~~~l~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~ 256 (507)
...|+++.|...+..... ......+. ...+..+++.++..+|++++|...+.+...
T Consensus 502 ~~~G~~~~A~~~~~~al~-~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~--------------------- 559 (903)
T PRK04841 502 HCKGELARALAMMQQTEQ-MARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ--------------------- 559 (903)
T ss_pred HHcCCHHHHHHHHHHHHH-HHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------------------
Confidence 788899888888777542 11111111 123456778888889999998887754210
Q ss_pred cHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcC----C-CchHHHHHHHHHHhhCCH
Q psy12000 257 SREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYT----S-DDSFNFNFAQAKCALGQY 331 (507)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~----~-~~~~~~~lg~~~~~~g~~ 331 (507)
............ .......+|.++...|++++|...+..+..... . ....+..+|.++...|++
T Consensus 560 ----------~~~~~~~~~~~~-~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~ 628 (903)
T PRK04841 560 ----------LIEEQHLEQLPM-HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDL 628 (903)
T ss_pred ----------HHHHhccccccH-HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCH
Confidence 000000000000 000011234444555555555554444332211 0 112223345555555555
Q ss_pred HHHHHHHHhhccc--CCCchhhhhhh---h-cccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHh
Q psy12000 332 KEAEEMFLLVQNE--GLKNDYVYISH---L-TKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFL 405 (507)
Q Consensus 332 ~~A~~~~~~~~~~--~~~~~~~~~~~---l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 405 (507)
++|...+.++... .......+... + ...+...|..+.|.................. ..-...++.++..
T Consensus 629 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~-----~~~~~~~a~~~~~ 703 (903)
T PRK04841 629 DNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL-----QGQWRNIARAQIL 703 (903)
T ss_pred HHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH-----HHHHHHHHHHHHH
Confidence 5555555444211 00000000000 0 0001111222222222111111000000000 0001223456666
Q ss_pred HhhHHHHHHHHHHHhhcC------CchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchh
Q psy12000 406 RCHYQEAIDIYKRILLDH------KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 462 (507)
Q Consensus 406 ~~~~~~Ai~~~~~~l~~~------p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~ 462 (507)
.|++++|+..+++++... ++...+...+|.++.+.|+.++|...++++++.....-.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 789999999999988632 223446777899999999999999999999988755433
No 108
>KOG0553|consensus
Probab=99.18 E-value=2.3e-10 Score=102.87 Aligned_cols=114 Identities=21% Similarity=0.121 Sum_probs=92.8
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHH
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLME 91 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (507)
-|.-....++|.+|+..|.++++++|.++.+|.+.|.+|.++|+++.|++.++.++..++..
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y------------------ 148 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY------------------ 148 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH------------------
Confidence 47788888999999999999999999999999999999999999999999988886544321
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHH
Q psy12000 92 YHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYD 151 (507)
Q Consensus 92 ~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 151 (507)
...+..||.+|..+|++.+|++.|+++|.++|++.....+|..+-.++++.+
T Consensus 149 --------skay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 149 --------SKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred --------HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 1225678889999999999999999999999998877777766666555544
No 109
>KOG1128|consensus
Probab=99.17 E-value=1.2e-09 Score=108.69 Aligned_cols=211 Identities=20% Similarity=0.119 Sum_probs=170.5
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHH
Q psy12000 10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSL 89 (507)
Q Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (507)
..+|..+...|-...|+..|++. +.|-....||...|+-.+|.....+-.+.++..+.+-.++....+..-.
T Consensus 402 ~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence 44799999999999999999876 6788899999999999999998877766555544444444433333332
Q ss_pred HHHHHHHhh-cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 90 MEYHQKLED-SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 90 ~~~~~~l~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
+.+-+.-.. +......+|...+.+++|.++...++..+..+|-....++.+|.|..++++++.|.+.|..++..+|++.
T Consensus 474 EkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ 553 (777)
T KOG1128|consen 474 EKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA 553 (777)
T ss_pred HHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch
Confidence 222221111 1223567777778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000 169 IALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL 233 (507)
Q Consensus 169 ~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~ 233 (507)
.+++.+++.+.+.++..+|-..++.+.+ .+-.+...|.|...+..+.|.+++|++.+.++
T Consensus 554 eaWnNls~ayi~~~~k~ra~~~l~EAlK-----cn~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 554 EAWNNLSTAYIRLKKKKRAFRKLKEALK-----CNYQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred hhhhhhhHHHHHHhhhHHHHHHHHHHhh-----cCCCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999999999999999888887643 23445678899999999999999999988765
No 110
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.17 E-value=4.1e-09 Score=96.55 Aligned_cols=196 Identities=13% Similarity=0.086 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHH
Q psy12000 101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLAL---NVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI---ALNLK 174 (507)
Q Consensus 101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---a~~~~ 174 (507)
...+..|...+..|+|++|++.|++++...|..+.+ .+.+|.+|++.+++++|+..++++++.+|+++. +++++
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 347788999999999999999999999999987654 489999999999999999999999999999875 45555
Q ss_pred hhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhh
Q psy12000 175 ACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYI-LKAVVQVTIGQ 253 (507)
Q Consensus 175 a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~-~~~~~~~~~g~ 253 (507)
|.+++..+.. .+... ...+. ....+....+|+..++++....|+... ..+...+...+
T Consensus 113 g~~~~~~~~~-----~~~~~-----~~~~~-----------~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~ 171 (243)
T PRK10866 113 GLTNMALDDS-----ALQGF-----FGVDR-----------SDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLK 171 (243)
T ss_pred HHhhhhcchh-----hhhhc-----cCCCc-----------cccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH
Confidence 5543332210 00000 00000 001223344566666665444443211 11110000000
Q ss_pred ccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCC---chHHHHHHHHHHhhCC
Q psy12000 254 DTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSD---DSFNFNFAQAKCALGQ 330 (507)
Q Consensus 254 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~---~~~~~~lg~~~~~~g~ 330 (507)
+. -|. ....+|..|++.|.|.-|+.-++.+.+..|+. +.+++.++.+|..+|.
T Consensus 172 -----~~--la~-----------------~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~ 227 (243)
T PRK10866 172 -----DR--LAK-----------------YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL 227 (243)
T ss_pred -----HH--HHH-----------------HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence 00 000 01246889999999999999999998888765 4677889999999999
Q ss_pred HHHHHHHHHhh
Q psy12000 331 YKEAEEMFLLV 341 (507)
Q Consensus 331 ~~~A~~~~~~~ 341 (507)
.++|.+....+
T Consensus 228 ~~~a~~~~~~l 238 (243)
T PRK10866 228 NAQADKVAKII 238 (243)
T ss_pred hHHHHHHHHHH
Confidence 99999887654
No 111
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.16 E-value=1.1e-09 Score=98.07 Aligned_cols=158 Identities=17% Similarity=0.162 Sum_probs=109.6
Q ss_pred ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHH
Q psy12000 5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPE---DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSH 81 (507)
Q Consensus 5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~ 81 (507)
+++..+..|..++..|+|.+|+..|+++....|.++ ++.+.+|.+++..|++++|+..+++.....|....
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~------ 77 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK------ 77 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc------
Confidence 456788899999999999999999999999988875 78899999999999999999998875432222110
Q ss_pred hcCChhHHHHHHHHHhhcHHHHHHHHHH-----------HHHhhcHHHHHHHHHHHHHhCCchhH---------------
Q psy12000 82 KLGDEKSLMEYHQKLEDSLEEQLCLASI-----------HFLRCHYQEAIDIYKRILLDHKDLLA--------------- 135 (507)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~la~~-----------~~~~g~~~~A~~~~~~~l~~~p~~~~--------------- 135 (507)
.+..++.+|.+ ...++...+|+..|+.++...|++.-
T Consensus 78 -----------------~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l 140 (203)
T PF13525_consen 78 -----------------ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL 140 (203)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred -----------------hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence 01112333333 34456667999999999999997642
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHHhhhhhhccChH
Q psy12000 136 --LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI---ALNLKACNTYKLFTSR 185 (507)
Q Consensus 136 --~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---a~~~~a~~~~~~~~~~ 185 (507)
--+.+|..|++.|.|..|+..++.+++..|+.+. ++..++..+.++|..+
T Consensus 141 a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 141 AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 1245789999999999999999999999998875 3333344444444433
No 112
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.15 E-value=5.7e-10 Score=92.09 Aligned_cols=95 Identities=9% Similarity=-0.091 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000 101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180 (507)
Q Consensus 101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~ 180 (507)
+..+.+|..++..|++++|...|+-+...+|.+...+++||.|+-.+|+|++|+..|.++..++|+++.++...|.+++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34889999999999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred ccChHHHHHhhHHHH
Q psy12000 181 LFTSRAAENQLKPIL 195 (507)
Q Consensus 181 ~~~~~~A~~~l~~~~ 195 (507)
.|+.+.|...|+.++
T Consensus 116 lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 116 CDNVCYAIKALKAVV 130 (157)
T ss_pred cCCHHHHHHHHHHHH
Confidence 888888888877654
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.15 E-value=1e-09 Score=114.47 Aligned_cols=143 Identities=7% Similarity=-0.148 Sum_probs=103.5
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHH
Q psy12000 28 IYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLA 107 (507)
Q Consensus 28 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la 107 (507)
-.....+..|.+++++.++|.+....|.+++|+..++.+....|.. ...+..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~--------------------------~~a~~~~a 127 (694)
T PRK15179 74 ELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS--------------------------SEAFILML 127 (694)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc--------------------------HHHHHHHH
Confidence 3333444567777777778888888888888877777665433322 12245677
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHH
Q psy12000 108 SIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAA 187 (507)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A 187 (507)
.++.+.+++++|+..+++++...|++..+++.+|.+..++|++++|+..|++++..+|+++.++.-+|..+...|+.++|
T Consensus 128 ~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 128 RGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred HHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 77777888888888888888888888888888888888888888888888888777777777777777777777777777
Q ss_pred HHhhHHHHH
Q psy12000 188 ENQLKPILV 196 (507)
Q Consensus 188 ~~~l~~~~~ 196 (507)
...|++.++
T Consensus 208 ~~~~~~a~~ 216 (694)
T PRK15179 208 RDVLQAGLD 216 (694)
T ss_pred HHHHHHHHH
Confidence 777777643
No 114
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.14 E-value=2.7e-09 Score=95.39 Aligned_cols=182 Identities=18% Similarity=0.214 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHH
Q psy12000 101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL---LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI---ALNLK 174 (507)
Q Consensus 101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---a~~~~ 174 (507)
+.++..|..++..|+|.+|+..|++++...|.+ +.+.+.+|.++++.|++++|+..++++++..|+++. +++++
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 447889999999999999999999999998864 578999999999999999999999999999999875 45555
Q ss_pred hhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcC---CCChHHHHHHHHHHHHh
Q psy12000 175 ACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLE---PSVPQEYILKAVVQVTI 251 (507)
Q Consensus 175 a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~---~~~~~~~~~~~~~~~~~ 251 (507)
|.+++.... .. + .....++...+|+..++.+. |.++... .+..
T Consensus 86 g~~~~~~~~--~~---~-----------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--~A~~---- 131 (203)
T PF13525_consen 86 GLSYYKQIP--GI---L-----------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAE--EAKK---- 131 (203)
T ss_dssp HHHHHHHHH--HH---H------------------------TT---HHHHHHHHHHHHHHHH-TTSTTHH--HHHH----
T ss_pred HHHHHHhCc--cc---h-----------------------hcccChHHHHHHHHHHHHHHHHCcCchHHH--HHHH----
Confidence 554433200 00 0 01223455566777766653 3333211 1100
Q ss_pred hhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc---hHHHHHHHHHHhh
Q psy12000 252 GQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD---SFNFNFAQAKCAL 328 (507)
Q Consensus 252 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~---~~~~~lg~~~~~~ 328 (507)
.+..... .+. .....+|..|++.|.|..|+..++.+.+..|+.+ .++..++.+|.++
T Consensus 132 --------~l~~l~~---~la---------~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l 191 (203)
T PF13525_consen 132 --------RLAELRN---RLA---------EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKL 191 (203)
T ss_dssp --------HHHHHHH---HHH---------HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred --------HHHHHHH---HHH---------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 0000000 000 0012478999999999999999999999888874 5667789999999
Q ss_pred CCHHHHHH
Q psy12000 329 GQYKEAEE 336 (507)
Q Consensus 329 g~~~~A~~ 336 (507)
|..+.|..
T Consensus 192 ~~~~~a~~ 199 (203)
T PF13525_consen 192 GLKQAADT 199 (203)
T ss_dssp T-HHHHHH
T ss_pred CChHHHHH
Confidence 99885543
No 115
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.13 E-value=2.5e-10 Score=81.80 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
+.+|..++..|++++|+..|++++..+|+++.+++.+|.|+..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999875
No 116
>KOG1130|consensus
Probab=99.12 E-value=2.3e-09 Score=99.70 Aligned_cols=291 Identities=14% Similarity=0.068 Sum_probs=166.7
Q ss_pred HHHHHhhcCHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh-h
Q psy12000 13 GYCHFHLGQYKQALGIYETLRHLPNPPE----DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE-K 87 (507)
Q Consensus 13 g~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 87 (507)
|.-++.+|++..-+..|+.+++.-..+- .+|..+|..|+.+++|++|+++-..= +.++..+++. +
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hD----------ltlar~lgdklG 93 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHD----------LTLARLLGDKLG 93 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhh----------HHHHHHhcchhc
Confidence 7888999999999999999999866543 56788999999999999999863210 1112222211 1
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC------chhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000 88 SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK------DLLALNVYGAMCYYKLDYYDVSQEQVAMYL 161 (507)
Q Consensus 88 ~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 161 (507)
.++ ..-+||.++-..|.|++|+.+..+-+.+.. ....++|+||.+|...|+--....-=+ .
T Consensus 94 EAK-----------ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee--~ 160 (639)
T KOG1130|consen 94 EAK-----------SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEE--K 160 (639)
T ss_pred ccc-----------ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhh--c
Confidence 111 134788999999999999999888776643 234688999999988775211000000 0
Q ss_pred hcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCC--hhHhHHHHHHHHHhhccHHHHHHHHH-------h
Q psy12000 162 AQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDV--IPESRLNLVIYHLKQEEHQEAFDLIK-------N 232 (507)
Q Consensus 162 ~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~l~-------~ 232 (507)
...|..... ..+.|.+.|..-++ ....+.+. --.++-+||..|+-.|+|++|+..-+ +
T Consensus 161 g~f~~ev~~------------al~~Av~fy~eNL~-l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e 227 (639)
T KOG1130|consen 161 GAFNAEVTS------------ALENAVKFYMENLE-LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE 227 (639)
T ss_pred ccccHHHHH------------HHHHHHHHHHHHHH-HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH
Confidence 001111100 00111111110000 00000000 01245566666666777777764322 1
Q ss_pred cCC--CChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhh
Q psy12000 233 LEP--SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSY 310 (507)
Q Consensus 233 ~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~ 310 (507)
+-. ....++...|..+..+|+...+.++|+.+..+-..+++...+. ..-+.||++|....++++||.|+.+-+.+
T Consensus 228 fGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA---QscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 228 FGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA---QSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred hhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 100 0011223344455555555555555555544433333322211 11236899999999999999998764433
Q ss_pred cC------CCchHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000 311 YT------SDDSFNFNFAQAKCALGQYKEAEEMFLLVQ 342 (507)
Q Consensus 311 ~~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~ 342 (507)
.. ....+.+.||.++...|..++|+.+.++.+
T Consensus 305 AqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 305 AQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 21 123567789999999999999998887654
No 117
>KOG1915|consensus
Probab=99.11 E-value=2.7e-06 Score=81.18 Aligned_cols=415 Identities=11% Similarity=0.031 Sum_probs=249.6
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHH
Q psy12000 27 GIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCL 106 (507)
Q Consensus 27 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 106 (507)
+.|+..++.+.-+...|...|..-..++++..|.++++++.+.+..+. ..++..
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~i--------------------------tLWlkY 113 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNI--------------------------TLWLKY 113 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccc--------------------------hHHHHH
Confidence 345555555555566777777777777888888888877765443321 114445
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHH
Q psy12000 107 ASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRA 186 (507)
Q Consensus 107 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~ 186 (507)
+..-.+.+...-|..++.+++..-|.-...++.--.+-..+|+...|.++|++-+...|+.. +++-......+.+..+.
T Consensus 114 ae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq-aW~sfI~fElRykeier 192 (677)
T KOG1915|consen 114 AEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ-AWLSFIKFELRYKEIER 192 (677)
T ss_pred HHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHhhHHHH
Confidence 56667777788888999999999998778887766677788999999999999999888764 33322223345567778
Q ss_pred HHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHH
Q psy12000 187 AENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQA 266 (507)
Q Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 266 (507)
|...++... . ..-...+|...+..-.+.|+..-|...+........++.. ...+.............++.|.-
T Consensus 193 aR~IYerfV----~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~-~e~lfvaFA~fEe~qkE~ERar~ 265 (677)
T KOG1915|consen 193 ARSIYERFV----L--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE-AEILFVAFAEFEERQKEYERARF 265 (677)
T ss_pred HHHHHHHHh----e--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777652 1 1112245666777666777766665555432111111111 11122222333333445566665
Q ss_pred HHHHhCCCcccccchhhhhHHHHHHHh-----hcCHHHHHH-----HHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHH
Q psy12000 267 LFQLVGSSQSECDTVPGRQCMASSFFL-----LRSFKDVIL-----YLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEE 336 (507)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~~~~Ai~-----~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 336 (507)
+|+-..+.-+...+. ....+.+.+. ..-.+++|. -|+...+.+|.+-+.++..-.+-...|+.+.-.+
T Consensus 266 iykyAld~~pk~rae--eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire 343 (677)
T KOG1915|consen 266 IYKYALDHIPKGRAE--ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRE 343 (677)
T ss_pred HHHHHHHhcCcccHH--HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHH
Confidence 554322110000000 0011122111 123344442 2445556677776677777777888899999999
Q ss_pred HHHhhcccCCCch-------hhhhhhhcccCccchhhhHHHHHHHHcCC--cHHHHHHHHHhhhcHHH--------HHHH
Q psy12000 337 MFLLVQNEGLKND-------YVYISHLTKCSPSRAKTRLSFHLSHKLGD--EKSLMEYHQKLEDSLEE--------QLCL 399 (507)
Q Consensus 337 ~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~--------~~~l 399 (507)
.|++++...|+.. ++|+ |+- +.+|..+.. ........+...+.+|. ++..
T Consensus 344 ~yErAIanvpp~~ekr~W~RYIYL-Win------------YalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmy 410 (677)
T KOG1915|consen 344 TYERAIANVPPASEKRYWRRYIYL-WIN------------YALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMY 410 (677)
T ss_pred HHHHHHccCCchhHHHHHHHHHHH-HHH------------HHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 9999985544321 1111 211 123333332 22333333332222221 2333
Q ss_pred HHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHH
Q psy12000 400 ASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRA 479 (507)
Q Consensus 400 ~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~ 479 (507)
+.....+-+...|...+-.++-..|.+.-...++ ..-.+++++|.....|++.|+..|.+-.++.--|-+--.+++-++
T Consensus 411 A~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YI-elElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915|consen 411 AQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYI-ELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred HHHHHHHcccHHHHHHHHHHhccCCchhHHHHHH-HHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHH
Confidence 4444445688999999999999999886654443 335689999999999999999999999999888887777788888
Q ss_pred HHHHHHHHHHhCC
Q psy12000 480 AENQLKPILVSAG 492 (507)
Q Consensus 480 ~~~~~~~~~~~~~ 492 (507)
+++.|. |..+-|
T Consensus 490 aRaife-lAi~qp 501 (677)
T KOG1915|consen 490 ARAIFE-LAISQP 501 (677)
T ss_pred HHHHHH-HHhcCc
Confidence 888554 333334
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.11 E-value=3.9e-09 Score=93.28 Aligned_cols=156 Identities=12% Similarity=-0.030 Sum_probs=137.4
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHH
Q psy12000 10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSL 89 (507)
Q Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (507)
...+..++..|+-+.+..+..+++..+|.+.++..-.|...+..|+|.+|+..+.++....+.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d---------------- 133 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD---------------- 133 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC----------------
Confidence 5578899999999999999999999999999888889999999999999999999986544432
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 90 MEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 90 ~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
.+.+..+|.+|.+.|++++|...|.++++..|..+.+..|+|..++-.|+++.|..++......-+.+..
T Consensus 134 ----------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~ 203 (257)
T COG5010 134 ----------WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR 203 (257)
T ss_pred ----------hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH
Confidence 1236779999999999999999999999999999999999999999999999999999999888887777
Q ss_pred HHHHHhhhhhhccChHHHHHhh
Q psy12000 170 ALNLKACNTYKLFTSRAAENQL 191 (507)
Q Consensus 170 a~~~~a~~~~~~~~~~~A~~~l 191 (507)
....++.+.-..|+++.|+...
T Consensus 204 v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 204 VRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHHHHhhcCChHHHHhhc
Confidence 7666777777889999998643
No 119
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.09 E-value=6.8e-09 Score=95.10 Aligned_cols=155 Identities=12% Similarity=0.051 Sum_probs=102.5
Q ss_pred ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhh---HHHHHHHHHhhccHHHHHHHHHhCCCCccccc----hHH
Q psy12000 5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDT---EFNIASCYFYLGMYLQANQILEKVPPSRAKTR----LSF 77 (507)
Q Consensus 5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~----~~~ 77 (507)
++...++.|..++..|+|++|++.|++++...|.++.+ .+.+|.+++++|++++|+..+++..+..|.+. +++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 45567789999999999999999999999999998754 48999999999999999999998765433321 233
Q ss_pred HHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhH---H--------------HHHH
Q psy12000 78 HLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLA---L--------------NVYG 140 (507)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~--------------~~~l 140 (507)
..+......+. ..+ ..+...-.....+....+|+..|++++...|++.- + -+.+
T Consensus 111 ~~g~~~~~~~~-----~~~----~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~i 181 (243)
T PRK10866 111 MRGLTNMALDD-----SAL----QGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSV 181 (243)
T ss_pred HHHHhhhhcch-----hhh----hhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221100000 000 00000001111223345788899999999987531 1 1345
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 141 AMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 141 a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
|..|++.|.|..|+.-++.+++..|+.+
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~ 209 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQ 209 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCc
Confidence 6777788888888888888777777655
No 120
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.09 E-value=6.6e-10 Score=80.64 Aligned_cols=65 Identities=23% Similarity=0.308 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q psy12000 101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD-YYDVSQEQVAMYLAQKP 165 (507)
Q Consensus 101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p 165 (507)
..+..+|.+++..|+|++|+..|+++++.+|+++.+++++|.|+..+| ++++|++.++++++.+|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 347789999999999999999999999999999999999999999999 79999999999999998
No 121
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.06 E-value=1.3e-09 Score=89.94 Aligned_cols=101 Identities=10% Similarity=-0.083 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhh
Q psy12000 394 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 473 (507)
Q Consensus 394 ~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~ 473 (507)
+.-..++...+..|++++|...|+-+...+|.+...++.||.|+..+|++.+|+..|..++.++||+|.+....|..++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34456777888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCC
Q psy12000 474 LFTSRAAENQLKPILVSAGPR 494 (507)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~ 494 (507)
+++...|+.-|+..++...++
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccC
Confidence 999999999999999888544
No 122
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.04 E-value=5.8e-10 Score=79.83 Aligned_cols=63 Identities=21% Similarity=0.218 Sum_probs=57.8
Q ss_pred HHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCch
Q psy12000 399 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 461 (507)
Q Consensus 399 l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~ 461 (507)
++..++..|+|++|+..|++++..+|+++.+++.+|.|+..+|++++|+..|+.+++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999999999999999999999999999999999999999999999986
No 123
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.03 E-value=1.7e-07 Score=104.17 Aligned_cols=234 Identities=12% Similarity=0.083 Sum_probs=152.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC---cH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKD------LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ-----KPT---SR 168 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~---~~ 168 (507)
...+|.++...|++++|...+++++..... ...+...+|.++...|++++|...+++++.. .+. ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 456888999999999999999999876432 1245677899999999999999999998763 111 12
Q ss_pred HHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCC-CCChhHhHHHHHHHHHhhccHHHHHHHHHhcC---CCC--hHHH-
Q psy12000 169 IALNLKACNTYKLFTSRAAENQLKPILVSILPPL-IDVIPESRLNLVIYHLKQEEHQEAFDLIKNLE---PSV--PQEY- 241 (507)
Q Consensus 169 ~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~---~~~--~~~~- 241 (507)
......+.+++..|+.++|...+..... ..... ......++..++.++...|++++|...+.+.. ... ....
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLE-VLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHH-hhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 2344567788888999999988877542 11111 12234556678899999999999988776541 111 0001
Q ss_pred HH----HHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccch--hhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCC--
Q psy12000 242 IL----KAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTV--PGRQCMASSFFLLRSFKDVILYLSSIKSYYTS-- 313 (507)
Q Consensus 242 ~~----~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~-- 313 (507)
.. ....+... +..+.|...+............. .....++.++...|++++|+..+.++......
T Consensus 653 ~~~~~~~~~~~~~~-------g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g 725 (903)
T PRK04841 653 ANADKVRLIYWQMT-------GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLR 725 (903)
T ss_pred hHHHHHHHHHHHHC-------CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 00 00111111 23344555554332211111100 01235788999999999999999887654211
Q ss_pred ----CchHHHHHHHHHHhhCCHHHHHHHHHhhccc
Q psy12000 314 ----DDSFNFNFAQAKCALGQYKEAEEMFLLVQNE 344 (507)
Q Consensus 314 ----~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~ 344 (507)
...++..+|.++..+|+.++|...+.+++..
T Consensus 726 ~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 726 LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1235667899999999999999999998754
No 124
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.03 E-value=2.8e-09 Score=103.80 Aligned_cols=113 Identities=13% Similarity=-0.008 Sum_probs=88.8
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000 9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS 88 (507)
Q Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (507)
....|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..++++....+..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~--------------- 69 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL--------------- 69 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------
Confidence 34568999999999999999999999999999999999999988888888888877764432221
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhc
Q psy12000 89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKL 147 (507)
Q Consensus 89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 147 (507)
+..++.+|.+++..|+|++|+..|++++..+|++..+...++.|..++
T Consensus 70 -----------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 70 -----------AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred -----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 223567777888888888888888888888888877777777765554
No 125
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.01 E-value=8.7e-09 Score=83.73 Aligned_cols=68 Identities=12% Similarity=0.129 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCch---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDL---LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA 170 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a 170 (507)
.+.+|.++...|++++|+.+|++++..+|++ +.+++.+|.++..+|++++|+..+++++...|++..+
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 4567778888888888888888888887764 5678888888888888888888888888888887754
No 126
>KOG2047|consensus
Probab=99.00 E-value=4.5e-05 Score=75.69 Aligned_cols=321 Identities=11% Similarity=0.028 Sum_probs=181.1
Q ss_pred hcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccc-------c-chHHHHHHhc-CChhHH
Q psy12000 19 LGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAK-------T-RLSFHLSHKL-GDEKSL 89 (507)
Q Consensus 19 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~-------~-~~~~~~~~~~-~~~~~~ 89 (507)
.|-.+-++..|++.|+.+|...+ .....+...+++++|.+.+..+.+.+.. + .++..+.... ..++..
T Consensus 151 ~~lPets~rvyrRYLk~~P~~~e---eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~ 227 (835)
T KOG2047|consen 151 HGLPETSIRVYRRYLKVAPEARE---EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKV 227 (835)
T ss_pred CCChHHHHHHHHHHHhcCHHHHH---HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchh
Confidence 45566788888888888887643 3344566788899988888877542211 1 1222221111 011111
Q ss_pred -----HH-HHHHHhhcHH----HHHHHHHHHHHhhcHHHHHHHHHHHHHhCC---chhHHHH-----HHHHHHHhcC---
Q psy12000 90 -----ME-YHQKLEDSLE----EQLCLASIHFLRCHYQEAIDIYKRILLDHK---DLLALNV-----YGAMCYYKLD--- 148 (507)
Q Consensus 90 -----~~-~~~~l~~~~~----~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~-----~la~~~~~~g--- 148 (507)
.. ....+...+. .+..||.-|...|++++|.++|++++..-- |+..++- .=..+..+++
T Consensus 228 ~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~ 307 (835)
T KOG2047|consen 228 QSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELAD 307 (835)
T ss_pred cccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 00 1111111121 156899999999999999999999997643 3322211 1111111222
Q ss_pred ----------CHHHHHHHHHHH------------HhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCC-CC
Q psy12000 149 ----------YYDVSQEQVAMY------------LAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLI-DV 205 (507)
Q Consensus 149 ----------~~~~A~~~~~~~------------l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~-~~ 205 (507)
+.+-....|+.+ +.++|++..-+... +-+..|+..+-+..+..+++++-+... +.
T Consensus 308 ~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs 385 (835)
T KOG2047|consen 308 EESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGS 385 (835)
T ss_pred hcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCC
Confidence 223333444444 45677766544332 333456666666666666543333322 22
Q ss_pred hhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCccc--------
Q psy12000 206 IPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSE-------- 277 (507)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-------- 277 (507)
.-..|..+|..|...|+.+.|..++.+...-.-...--.+.+...-++.....+.++.|.++.+...--|..
T Consensus 386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~ 465 (835)
T KOG2047|consen 386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN 465 (835)
T ss_pred hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence 335788899999999999999999987643222112223445555555444456677777766532111110
Q ss_pred ccchh--------hhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhccc
Q psy12000 278 CDTVP--------GRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNE 344 (507)
Q Consensus 278 ~~~~~--------~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~ 344 (507)
..+.. .|..++......|-++.--..|+++..+---.|.+..|.|..+..-.-+++|.+.|++-+..
T Consensus 466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 01111 12334555555666666666777776655456677778888888888888888888886543
No 127
>KOG3060|consensus
Probab=99.00 E-value=8.2e-08 Score=84.24 Aligned_cols=168 Identities=15% Similarity=0.086 Sum_probs=131.8
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCcc
Q psy12000 283 GRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPS 362 (507)
Q Consensus 283 ~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 362 (507)
.+..+..+....|+.+-|-.+++......|.+..+.-..|..+...|.+++|+++|+.+++.+|.+...+..-++
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA----- 128 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA----- 128 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH-----
Confidence 344566677788999999999999887779888887778999999999999999999999988777665533211
Q ss_pred chhhhHHHHHHHHcCCcHHHH----HHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhcc
Q psy12000 363 RAKTRLSFHLSHKLGDEKSLM----EYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYY 438 (507)
Q Consensus 363 ~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~ 438 (507)
+....|...+++ +++..+-...+.+..++.+++..|.|++|.=++++++-..|.++..+..+|.+++
T Consensus 129 ---------ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Y 199 (289)
T KOG3060|consen 129 ---------ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLY 199 (289)
T ss_pred ---------HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 122233333332 2333333345667778899999999999999999999999999999999999999
Q ss_pred ccc---cchhHHHHHHHHHhcCCCchhhh
Q psy12000 439 KLD---YYDVSQEQVAMYLAQKPTSRIAL 464 (507)
Q Consensus 439 ~~g---~~~~A~~~~~~~l~~~P~~~~a~ 464 (507)
-+| +..-|.+.|.++++++|.+.-++
T Consensus 200 t~gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 200 TQGGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred HHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 887 67788999999999999766553
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.96 E-value=2e-08 Score=96.11 Aligned_cols=149 Identities=15% Similarity=0.040 Sum_probs=112.0
Q ss_pred CCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcH
Q psy12000 37 NPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHY 116 (507)
Q Consensus 37 p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~ 116 (507)
|....++|..+..++..|++++|+..+.......+.+..+ ....+.++...++.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~--------------------------~~~~~~i~~~~nk~ 356 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYY--------------------------LELAGDILLEANKA 356 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHH--------------------------HHHHHHHHHHcCCh
Confidence 6666778888888888888888888877665444443111 22456788888888
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHH
Q psy12000 117 QEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILV 196 (507)
Q Consensus 117 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~ 196 (507)
.+|++.+++++..+|+.+....++|.++++.|++.+|+..++..+..+|+++..|.++|..+-.+|+..++......
T Consensus 357 ~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE--- 433 (484)
T COG4783 357 KEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE--- 433 (484)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH---
Confidence 88888888888888888888888888888888888888888888888888888888888888788887777665543
Q ss_pred hhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000 197 SILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL 233 (507)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~ 233 (507)
.|.-.|++++|+..+...
T Consensus 434 -------------------~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 434 -------------------GYALAGRLEQAIIFLMRA 451 (484)
T ss_pred -------------------HHHhCCCHHHHHHHHHHH
Confidence 245578888887776543
No 129
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.96 E-value=2.1e-09 Score=77.70 Aligned_cols=66 Identities=27% Similarity=0.367 Sum_probs=60.0
Q ss_pred HHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000 111 FLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC 176 (507)
Q Consensus 111 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~ 176 (507)
...|++++|+..|++++..+|++.++++.+|.|+++.|++++|.+.+++++..+|+++....+++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 578999999999999999999999999999999999999999999999999999998776665543
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.95 E-value=5.4e-08 Score=93.27 Aligned_cols=120 Identities=17% Similarity=0.017 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccC
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT 183 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~ 183 (507)
+..+..++..|.+++|+..++.++...|+|+..+-..+.+++..|+.++|.+.+++++..+|+.+.....+|..+++.|+
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCC
Confidence 34455555666666666666666666666666666666666666666666666666666666665555555666666666
Q ss_pred hHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHH
Q psy12000 184 SRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFD 228 (507)
Q Consensus 184 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 228 (507)
.++|+..+.... ...|..|..|..|+..|-.+|+-.+|..
T Consensus 390 ~~eai~~L~~~~-----~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 390 PQEAIRILNRYL-----FNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred hHHHHHHHHHHh-----hcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 666665555442 2344455566666666666666555543
No 131
>KOG3060|consensus
Probab=98.95 E-value=1.6e-07 Score=82.43 Aligned_cols=145 Identities=14% Similarity=-0.041 Sum_probs=111.0
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHH
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLME 91 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (507)
+..+....|+.+-|..+++++....|.+..+--..|..+-..|++++|+++++...+.++.+.+..
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~-------------- 123 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIR-------------- 123 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHH--------------
Confidence 466677889999999999999999999999999999999999999999999998876555442110
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12000 92 YHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL 171 (507)
Q Consensus 92 ~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~ 171 (507)
-..-.+.-.+|+--+||+-..+.++..|.+.++|..++.+|+..|+|++|.-.+++++-..|.++..+
T Consensus 124 ------------KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f 191 (289)
T KOG3060|consen 124 ------------KRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYF 191 (289)
T ss_pred ------------HHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHH
Confidence 11122444567777888888888888888888888888888888888888888888888888877766
Q ss_pred HHHhhhhhhcc
Q psy12000 172 NLKACNTYKLF 182 (507)
Q Consensus 172 ~~~a~~~~~~~ 182 (507)
..+|.+.|-+|
T Consensus 192 ~rlae~~Yt~g 202 (289)
T KOG3060|consen 192 QRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHHHHh
Confidence 66666665544
No 132
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.94 E-value=2.2e-09 Score=81.25 Aligned_cols=80 Identities=24% Similarity=0.230 Sum_probs=60.9
Q ss_pred HhhcHHHHHHHHHHHHHhCCc--hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHH
Q psy12000 112 LRCHYQEAIDIYKRILLDHKD--LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAEN 189 (507)
Q Consensus 112 ~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~ 189 (507)
.+|+|++|+.+|++++...|. +..+++.+|.|++++|+|++|++.+++ .+.+|.+.....++|.+++.+|++++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 566777899999999999999999998 77777766555555666666666666655
Q ss_pred hhH
Q psy12000 190 QLK 192 (507)
Q Consensus 190 ~l~ 192 (507)
.++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 133
>KOG0553|consensus
Probab=98.93 E-value=1e-08 Score=92.33 Aligned_cols=92 Identities=18% Similarity=0.088 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
+-.-|.-+.+.++|.+|+..|.++|..+|.++-.|-+.|.+|.++|+++.|++-+++++.+||.+..+|..++..++.+|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 44678889999999999999999999999999999999999999999999999999999999988877766666666666
Q ss_pred ChHHHHHhhHHH
Q psy12000 183 TSRAAENQLKPI 194 (507)
Q Consensus 183 ~~~~A~~~l~~~ 194 (507)
++..|++.|++.
T Consensus 164 k~~~A~~aykKa 175 (304)
T KOG0553|consen 164 KYEEAIEAYKKA 175 (304)
T ss_pred cHHHHHHHHHhh
Confidence 666666665554
No 134
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.93 E-value=1.7e-08 Score=98.26 Aligned_cols=109 Identities=16% Similarity=0.038 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
+...|...+..|+|++|+..|++++..+|++..+++++|.++..+|++++|+..+++++..+|+++.++..+|.+++.+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45678889999999999999999999999999999999999999999999999999999999999998888888888888
Q ss_pred ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHH
Q psy12000 183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIY 216 (507)
Q Consensus 183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (507)
++++|+..++.+++ ..|..+.+...++.+
T Consensus 85 ~~~eA~~~~~~al~-----l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGAS-----LAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHH-----hCCCCHHHHHHHHHH
Confidence 88888888877642 334444444444433
No 135
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.91 E-value=3.1e-08 Score=83.56 Aligned_cols=126 Identities=17% Similarity=0.107 Sum_probs=91.4
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChh
Q psy12000 11 WLGYCHFHLGQYKQALGIYETLRHLPNPP---EDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEK 87 (507)
Q Consensus 11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (507)
.-....+..++...+...++.+.+.+|++ ..+.+.+|.+++..|++++|...|+.+....+... +.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~-l~---------- 84 (145)
T PF09976_consen 16 EQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE-LK---------- 84 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH-HH----------
Confidence 33444556788888888888888888887 35677788888888888888888887754332110 00
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12000 88 SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY 160 (507)
Q Consensus 88 ~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 160 (507)
+...+.+|.++..+|++++|+..++. +...+..+.+...+|.++...|++++|+..|+++
T Consensus 85 ------------~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 85 ------------PLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 11156788888888888888888866 3344556667778888888888888888888765
No 136
>KOG1128|consensus
Probab=98.90 E-value=7.4e-08 Score=96.22 Aligned_cols=153 Identities=14% Similarity=0.062 Sum_probs=122.2
Q ss_pred HHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q psy12000 172 NLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTI 251 (507)
Q Consensus 172 ~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 251 (507)
..++.+++..|-.+.|...++++ +.|-..+.+|...|+.++|.....+...++|.. ..|..+
T Consensus 402 ~~laell~slGitksAl~I~Erl-------------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~-----~lyc~L 463 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL-------------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDP-----RLYCLL 463 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH-------------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcc-----hhHHHh
Confidence 45677777888888888888765 567788999999999999988776654443332 356678
Q ss_pred hhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCH
Q psy12000 252 GQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQY 331 (507)
Q Consensus 252 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 331 (507)
|+.......+++|.++++.+.. .|...+|......++|+++.+.++...+.+|-....+|.+|.+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sa--------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISA--------RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhH--------HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 8888888899999999875431 12245666677789999999999999999999888999999999999999
Q ss_pred HHHHHHHHhhcccCCCchh
Q psy12000 332 KEAEEMFLLVQNEGLKNDY 350 (507)
Q Consensus 332 ~~A~~~~~~~~~~~~~~~~ 350 (507)
..|...|.+++..+|.+..
T Consensus 536 q~av~aF~rcvtL~Pd~~e 554 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAE 554 (777)
T ss_pred HHHHHHHHHHhhcCCCchh
Confidence 9999999999877765543
No 137
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.89 E-value=5.2e-09 Score=75.88 Aligned_cols=62 Identities=23% Similarity=0.318 Sum_probs=57.6
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccc-cchhHHHHHHHHHhcCC
Q psy12000 397 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD-YYDVSQEQVAMYLAQKP 458 (507)
Q Consensus 397 ~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g-~~~~A~~~~~~~l~~~P 458 (507)
..+|.+++..|+|++|+..|+++++.+|+++.+++++|.+|.++| ++++|++.++++++++|
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 446778888899999999999999999999999999999999999 79999999999999998
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.89 E-value=1.5e-08 Score=82.28 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=88.2
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHhhcCCch---hhhHHHHHhhccccccchhHHHHHHHHHhcCCCc---hhhhhHHHhh
Q psy12000 397 LCLASIHFLRCHYQEAIDIYKRILLDHKDL---LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS---RIALNLKACN 470 (507)
Q Consensus 397 ~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~---~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~---~~a~~~~~~~ 470 (507)
..++..+...|++++|++.|++++..+|++ ..+.+.+|.++.+.|++++|+..++.++..+|++ +.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 445566777899999999999999988876 4678889999999999999999999999999996 5678889999
Q ss_pred hhhcCChHHHHHHHHHHHHhCCCCc
Q psy12000 471 TYKLFTSRAAENQLKPILVSAGPRV 495 (507)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (507)
+..+++...+...++.+++.+|.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCCh
Confidence 9999999999999999999999873
No 139
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.87 E-value=2.9e-09 Score=76.96 Aligned_cols=66 Identities=27% Similarity=0.343 Sum_probs=60.9
Q ss_pred hHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhh
Q psy12000 405 LRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN 470 (507)
Q Consensus 405 ~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~ 470 (507)
..|+|++|+..|++++..+|++..+.+.+|.||.+.|++++|...+++++..+|+++....+++.+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 458999999999999999999999999999999999999999999999999999999988877653
No 140
>KOG3081|consensus
Probab=98.84 E-value=1.5e-06 Score=77.08 Aligned_cols=250 Identities=16% Similarity=0.158 Sum_probs=143.8
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChh
Q psy12000 8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEK 87 (507)
Q Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (507)
..+.-.+-+|..|+|..++..-++.-... ...+.-+++.++|..+|++..-+.........+... ...++.....++
T Consensus 10 d~LF~iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqA--vr~~a~~~~~e~ 86 (299)
T KOG3081|consen 10 DELFNIRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQA--VRLLAEYLELES 86 (299)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccccCChHHH--HHHHHHHhhCcc
Confidence 34445667888999999998877664433 666788899999999999987776655443222221 111111111121
Q ss_pred HHHHHH----HHHhh-----cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12000 88 SLMEYH----QKLED-----SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVA 158 (507)
Q Consensus 88 ~~~~~~----~~l~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 158 (507)
..+... +.+.. +...+..-|.++.+.|++++|...... .++.++.-.--.|+.++.+++-|...++
T Consensus 87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 11111 011244445566666666666665444 2334444444456666666666666666
Q ss_pred HHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCCh
Q psy12000 159 MYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVP 238 (507)
Q Consensus 159 ~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~ 238 (507)
++.+.+.+....- .+++|.+++ ...+++.+|+-+++++..+.+
T Consensus 162 ~mq~ided~tLtQ----------------------------------LA~awv~la---~ggek~qdAfyifeE~s~k~~ 204 (299)
T KOG3081|consen 162 KMQQIDEDATLTQ----------------------------------LAQAWVKLA---TGGEKIQDAFYIFEELSEKTP 204 (299)
T ss_pred HHHccchHHHHHH----------------------------------HHHHHHHHh---ccchhhhhHHHHHHHHhcccC
Confidence 5554443332100 011222211 112345555555555433222
Q ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHH
Q psy12000 239 QEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFN 318 (507)
Q Consensus 239 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~ 318 (507)
..+ . ....++.|.+.+++|++|...++.++..+++++.++
T Consensus 205 ~T~-------------------------------------~---llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 205 PTP-------------------------------------L---LLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred CCh-------------------------------------H---HHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 111 1 112468899999999999999999999999999999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000 319 FNFAQAKCALGQYKEAEEMFLLVQ 342 (507)
Q Consensus 319 ~~lg~~~~~~g~~~~A~~~~~~~~ 342 (507)
.|+-.+-...|+.+++.+-+-.-+
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHH
Confidence 999999999999888877665443
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.84 E-value=1.3e-07 Score=79.75 Aligned_cols=119 Identities=18% Similarity=0.006 Sum_probs=79.3
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhCCch---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHHhhhhhh
Q psy12000 107 ASIHFLRCHYQEAIDIYKRILLDHKDL---LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI---ALNLKACNTYK 180 (507)
Q Consensus 107 a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---a~~~~a~~~~~ 180 (507)
+......++.+.+...+++++..+|++ ..+.+.+|.+++..|++++|...|+.++...|+... +...++.+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~ 97 (145)
T PF09976_consen 18 ALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ 97 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 333446888899988899999998887 467778899999999999999999999887766532 34444555555
Q ss_pred ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHH
Q psy12000 181 LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIK 231 (507)
Q Consensus 181 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~ 231 (507)
.|++++|...++.. ...+..+.++..+|.+|.+.|++++|+..++
T Consensus 98 ~~~~d~Al~~L~~~------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 98 QGQYDEALATLQQI------PDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred cCCHHHHHHHHHhc------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55555555554321 1122334455555666666666666655554
No 142
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.84 E-value=7.4e-08 Score=83.90 Aligned_cols=87 Identities=18% Similarity=0.014 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc---hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKD---LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY 179 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~ 179 (507)
++.+|..+...|++++|+.+|++++...|+ ...+++.+|.++..+|++++|+..+++++..+|++..++..++.++.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 788999999999999999999999988765 35789999999999999999999999999999999988888888887
Q ss_pred hccChHHHHH
Q psy12000 180 KLFTSRAAEN 189 (507)
Q Consensus 180 ~~~~~~~A~~ 189 (507)
..|+...+..
T Consensus 118 ~~g~~~~a~~ 127 (172)
T PRK02603 118 KRGEKAEEAG 127 (172)
T ss_pred HcCChHhHhh
Confidence 7776655543
No 143
>KOG3081|consensus
Probab=98.84 E-value=5.7e-07 Score=79.68 Aligned_cols=250 Identities=13% Similarity=0.050 Sum_probs=145.4
Q ss_pred HhhccHHHHHHHHHhcCC--CChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhc
Q psy12000 218 LKQEEHQEAFDLIKNLEP--SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLR 295 (507)
Q Consensus 218 ~~~~~~~~A~~~l~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 295 (507)
+=.|+|.+++....+... ..+.-.......+..+|+.......++.+ . .....+...++.....-+
T Consensus 19 fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~----------~--~~~lqAvr~~a~~~~~e~ 86 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEG----------K--ATPLQAVRLLAEYLELES 86 (299)
T ss_pred HHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccccc----------c--CChHHHHHHHHHHhhCcc
Confidence 336777777776665432 22222333455566666544322221110 0 111222223444444444
Q ss_pred CHHHHHH-HHHHhhhhc-CCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHH
Q psy12000 296 SFKDVIL-YLSSIKSYY-TSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLS 373 (507)
Q Consensus 296 ~~~~Ai~-~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (507)
+-++-+. ..+.+.... ..+..+...-|.++.+.|++++|+....+....+..... ..++.+..+.+.|....
T Consensus 87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~------VqI~lk~~r~d~A~~~l 160 (299)
T KOG3081|consen 87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN------VQILLKMHRFDLAEKEL 160 (299)
T ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 4444443 334333222 223345555678899999999999988874333211111 22344555666666555
Q ss_pred HHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhH--hhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHH
Q psy12000 374 HKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLR--CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVA 451 (507)
Q Consensus 374 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~--~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~ 451 (507)
.++.+.++...+ .. ++-+|+-+.. +++.+|.=+|+++-++.|-.+.+....|.|...+|++++|...++
T Consensus 161 k~mq~ided~tL-tQ--------LA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 161 KKMQQIDEDATL-TQ--------LAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred HHHHccchHHHH-HH--------HHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 555544332111 11 2223444433 479999999999998887778888888999999999999999999
Q ss_pred HHHhcCCCchhhh-hHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000 452 MYLAQKPTSRIAL-NLKACNTYKLFTSRAAENQLKPILVSAGPR 494 (507)
Q Consensus 452 ~~l~~~P~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
.+|..+|++|+++ |+..+.+..=++.+.-++-+.-+....|+|
T Consensus 232 eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 232 EALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 9999999999875 445555554334455556667777778877
No 144
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.82 E-value=1.9e-08 Score=73.77 Aligned_cols=70 Identities=27% Similarity=0.361 Sum_probs=65.0
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000 106 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA 175 (507)
Q Consensus 106 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a 175 (507)
|..+|..++++++|++++++++..+|+++.++...|.|+..+|++++|++.|+++++..|+++.+..+.+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999999999998765544
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.79 E-value=6.4e-08 Score=74.44 Aligned_cols=91 Identities=24% Similarity=0.242 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
++.+|.++...|++++|+..+++++...|.+..+++.+|.++...|++++|++.+++++...|.+..++..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 46789999999999999999999999999998999999999999999999999999999998887765555555555555
Q ss_pred ChHHHHHhhHH
Q psy12000 183 TSRAAENQLKP 193 (507)
Q Consensus 183 ~~~~A~~~l~~ 193 (507)
+++.|...+..
T Consensus 83 ~~~~a~~~~~~ 93 (100)
T cd00189 83 KYEEALEAYEK 93 (100)
T ss_pred hHHHHHHHHHH
Confidence 55555544443
No 146
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.78 E-value=9e-08 Score=83.07 Aligned_cols=130 Identities=14% Similarity=-0.020 Sum_probs=99.4
Q ss_pred HHhhcCHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHH
Q psy12000 16 HFHLGQYKQALGIYETLRHLPNPP--EDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYH 93 (507)
Q Consensus 16 ~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (507)
+|....|..+...+...++..+.. ...++.+|.++..+|++++|+..++++....+...
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------------------- 69 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------------------- 69 (168)
T ss_pred cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-------------------
Confidence 445566778888888887766665 46789999999999999999999998753211100
Q ss_pred HHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHH-------hcCCHH-------HHHHHHHH
Q psy12000 94 QKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYY-------KLDYYD-------VSQEQVAM 159 (507)
Q Consensus 94 ~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~ 159 (507)
..+..+..+|.++...|++++|+..|++++..+|.....+.++|.++. .+|+++ +|+..+++
T Consensus 70 ----~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 145 (168)
T CHL00033 70 ----DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ 145 (168)
T ss_pred ----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 001126789999999999999999999999999999998888888888 777877 55555556
Q ss_pred HHhcCCCcH
Q psy12000 160 YLAQKPTSR 168 (507)
Q Consensus 160 ~l~~~p~~~ 168 (507)
++..+|.+.
T Consensus 146 a~~~~p~~~ 154 (168)
T CHL00033 146 AIALAPGNY 154 (168)
T ss_pred HHHhCcccH
Confidence 667777654
No 147
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.5e-07 Score=85.63 Aligned_cols=123 Identities=14% Similarity=0.047 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcH
Q psy12000 21 QYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSL 100 (507)
Q Consensus 21 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (507)
+.+.-+.-++.-+..+|++.+-|..+|.+|+.+|++..|...|.++....+.+ +
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--------------------------~ 190 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--------------------------P 190 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--------------------------H
Confidence 35667778888889999999999999999999999999999998876533332 2
Q ss_pred HHHHHHHHHHHHh---hcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 101 EEQLCLASIHFLR---CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 101 ~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
+-+..+|.+++.+ ..-.++...|++++..+|.++.+.+.||..++..|+|.+|+..++.+++..|.+..
T Consensus 191 ~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 191 EILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 2234455554443 34568899999999999999999999999999999999999999999988776654
No 148
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.77 E-value=7.2e-08 Score=88.96 Aligned_cols=68 Identities=6% Similarity=0.018 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc---hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKD---LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA 170 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a 170 (507)
++.+|.+|+..|++++|+..|++++..+|+ .+++++.+|.++..+|++++|...|+++++..|++..+
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 456667777777777777777777776665 45677777777777777777777777777777777654
No 149
>KOG2047|consensus
Probab=98.77 E-value=0.00029 Score=70.13 Aligned_cols=88 Identities=11% Similarity=0.093 Sum_probs=57.6
Q ss_pred HHHHHHHhhcCHHHHHHHHH-HhhhhcCCC-----chHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCc----hhhhhhh
Q psy12000 286 CMASSFFLLRSFKDVILYLS-SIKSYYTSD-----DSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKN----DYVYISH 355 (507)
Q Consensus 286 ~la~~~~~~~~~~~Ai~~~~-~~~~~~~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~ 355 (507)
|+-.+-+..|+..+-+..|. .++..+|.- ...+..+|..|...|+.+.|...|+++...++.. ..+|..|
T Consensus 352 W~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~w 431 (835)
T KOG2047|consen 352 WHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAW 431 (835)
T ss_pred HHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence 45566677888888888555 455666643 2445668999999999999999999987654432 2344443
Q ss_pred hcccCccchhhhHHHHHHH
Q psy12000 356 LTKCSPSRAKTRLSFHLSH 374 (507)
Q Consensus 356 l~~~~~~~~~~~~A~~~~~ 374 (507)
|..-.+..+++.|+.+..
T Consensus 432 -aemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 432 -AEMELRHENFEAALKLMR 449 (835)
T ss_pred -HHHHHhhhhHHHHHHHHH
Confidence 233334555666665444
No 150
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.77 E-value=1.5e-08 Score=74.31 Aligned_cols=69 Identities=26% Similarity=0.344 Sum_probs=64.3
Q ss_pred HHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHh
Q psy12000 401 SIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC 469 (507)
Q Consensus 401 ~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~ 469 (507)
.++...++|++|+.++++++..+|+++.++...|.+++++|++++|+..++.+++..|+++.+..+++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 467778999999999999999999999999999999999999999999999999999999998776654
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.76 E-value=5.6e-08 Score=74.81 Aligned_cols=95 Identities=23% Similarity=0.217 Sum_probs=87.4
Q ss_pred HHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChH
Q psy12000 399 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSR 478 (507)
Q Consensus 399 l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~ 478 (507)
++.+++..|++++|+..++++++..|+++.+...+|.++...|++++|++.++.+++..|.++.++..++.+++..++.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 45577778999999999999999999998889999999999999999999999999999999999999999999988999
Q ss_pred HHHHHHHHHHHhCCC
Q psy12000 479 AAENQLKPILVSAGP 493 (507)
Q Consensus 479 ~~~~~~~~~~~~~~~ 493 (507)
.+...++.+++..|.
T Consensus 86 ~a~~~~~~~~~~~~~ 100 (100)
T cd00189 86 EALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHccCCC
Confidence 999999999888773
No 152
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.74 E-value=1.1e-07 Score=77.28 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=83.9
Q ss_pred HHHHHhHhhHHHHHHHHHHHhhcCCchh---hhHHHHHhhccccccchhHHHHHHHHHhcCCCchh---hhhHHHhhhhh
Q psy12000 400 ASIHFLRCHYQEAIDIYKRILLDHKDLL---ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI---ALNLKACNTYK 473 (507)
Q Consensus 400 ~~~~~~~~~~~~Ai~~~~~~l~~~p~~~---~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~---a~~~~~~~~~~ 473 (507)
|...+..|+|++|++.|+.+....|-.+ .+...+|.+|++.|++++|+..++.++++||+|+. ++.++|..+|.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 3455567999999999999999888663 57889999999999999999999999999999986 47789999998
Q ss_pred cCC---------------hHHHHHHHHHHHHhCCCCc
Q psy12000 474 LFT---------------SRAAENQLKPILVSAGPRV 495 (507)
Q Consensus 474 ~~~---------------~~~~~~~~~~~~~~~~~~~ 495 (507)
+.. -+.|.+.|+.+++.+|..+
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 765 7788889999999999874
No 153
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.73 E-value=2.4e-07 Score=80.34 Aligned_cols=77 Identities=16% Similarity=-0.078 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc---hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKD---LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY 179 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~ 179 (507)
++.+|.++..+|++++|+..|++++...|+ .+.++.++|.++...|++++|+..+++++..+|....++..++.++.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 678999999999999999999999988776 34589999999999999999999999999999998877666655544
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.73 E-value=4.5e-07 Score=85.69 Aligned_cols=175 Identities=14% Similarity=0.090 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCC------chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHK------DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC 176 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~ 176 (507)
+..-|..|...|++++|.+.|.++....- .....+...+.++.+. ++++|++.+++++.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~-------------- 102 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIE-------------- 102 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH--------------
Confidence 44567777778888888888887755431 1223444455555444 66677666666542
Q ss_pred hhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhh-ccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhcc
Q psy12000 177 NTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQ-EEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDT 255 (507)
Q Consensus 177 ~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~ 255 (507)
++...|++..|- ....++|.+|... |++++|++.+.+
T Consensus 103 ~y~~~G~~~~aA-------------------~~~~~lA~~ye~~~~d~e~Ai~~Y~~----------------------- 140 (282)
T PF14938_consen 103 IYREAGRFSQAA-------------------KCLKELAEIYEEQLGDYEKAIEYYQK----------------------- 140 (282)
T ss_dssp HHHHCT-HHHHH-------------------HHHHHHHHHHCCTT--HHHHHHHHHH-----------------------
T ss_pred HHHhcCcHHHHH-------------------HHHHHHHHHHHHHcCCHHHHHHHHHH-----------------------
Confidence 233444444443 2344566666666 677777666643
Q ss_pred CcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCC-------chHHHHHHHHHHhh
Q psy12000 256 GSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSD-------DSFNFNFAQAKCAL 328 (507)
Q Consensus 256 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~-------~~~~~~lg~~~~~~ 328 (507)
|..+|..-... .........+|.++...|+|++|++.|+++....-+. ...++..+.|+...
T Consensus 141 --------A~~~y~~e~~~---~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~ 209 (282)
T PF14938_consen 141 --------AAELYEQEGSP---HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAM 209 (282)
T ss_dssp --------HHHHHHHTT-H---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHCCCh---hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHc
Confidence 33333321100 0001122357899999999999999999876543221 13445678899999
Q ss_pred CCHHHHHHHHHhhcccC
Q psy12000 329 GQYKEAEEMFLLVQNEG 345 (507)
Q Consensus 329 g~~~~A~~~~~~~~~~~ 345 (507)
|++-.|...+++....+
T Consensus 210 ~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 210 GDYVAARKALERYCSQD 226 (282)
T ss_dssp T-HHHHHHHHHHHGTTS
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 99999999999986554
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.71 E-value=1e-07 Score=82.96 Aligned_cols=108 Identities=14% Similarity=0.013 Sum_probs=87.3
Q ss_pred CChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHH
Q psy12000 38 PPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQ 117 (507)
Q Consensus 38 ~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~ 117 (507)
....+++.+|.++...|++++|+.+++++....+... .....+..+|.++...|+++
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-----------------------~~~~~~~~la~~~~~~g~~~ 89 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-----------------------DRSYILYNMGIIYASNGEHD 89 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-----------------------hHHHHHHHHHHHHHHcCCHH
Confidence 4556789999999999999999999988753211100 00112678999999999999
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhcCCCcH
Q psy12000 118 EAIDIYKRILLDHKDLLALNVYGAMCYYKLDY--------------YDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 118 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~~l~~~p~~~ 168 (507)
+|+.+|++++...|++..++..+|.++...|+ +++|++.+++++..+|++.
T Consensus 90 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 90 KALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 99999999999999999999999999999888 5777888888888888764
No 156
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.71 E-value=6.6e-08 Score=89.22 Aligned_cols=90 Identities=12% Similarity=0.016 Sum_probs=82.6
Q ss_pred HhhHHHHHHHHHHHhhcCCch---hhhHHHHHhhccccccchhHHHHHHHHHhcCCCc---hhhhhHHHhhhhhcCChHH
Q psy12000 406 RCHYQEAIDIYKRILLDHKDL---LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS---RIALNLKACNTYKLFTSRA 479 (507)
Q Consensus 406 ~~~~~~Ai~~~~~~l~~~p~~---~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~---~~a~~~~~~~~~~~~~~~~ 479 (507)
.|+|++|+..|++++..+|++ +.+++++|.+|+..|++++|+..|+.+++.+|++ +.++..+|.+++.+++.+.
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 489999999999999999998 4799999999999999999999999999999996 4567778999999999999
Q ss_pred HHHHHHHHHHhCCCCc
Q psy12000 480 AENQLKPILVSAGPRV 495 (507)
Q Consensus 480 ~~~~~~~~~~~~~~~~ 495 (507)
|.+.|+.+++.+|...
T Consensus 236 A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 236 AKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHCcCCH
Confidence 9999999999999864
No 157
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.71 E-value=1.3e-06 Score=77.84 Aligned_cols=186 Identities=17% Similarity=0.195 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc---hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHHh
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKD---LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI---ALNLKA 175 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---a~~~~a 175 (507)
.++.-|......|++++|++.|+.+...+|. ...+...++.++++.+++++|+..+++++..+|+++. ++++++
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 3788999999999999999999999999875 4578899999999999999999999999999999886 466666
Q ss_pred hhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhcc
Q psy12000 176 CNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDT 255 (507)
Q Consensus 176 ~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~ 255 (507)
.+++..-+ .... .+.-..+|+..++++....|.+.+..
T Consensus 116 Ls~~~~i~------------------~~~r-------------Dq~~~~~A~~~f~~~i~ryPnS~Ya~----------- 153 (254)
T COG4105 116 LSYFFQID------------------DVTR-------------DQSAARAAFAAFKELVQRYPNSRYAP----------- 153 (254)
T ss_pred HHHhccCC------------------cccc-------------CHHHHHHHHHHHHHHHHHCCCCcchh-----------
Confidence 65432100 0000 11112234444444433333221100
Q ss_pred CcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc---hHHHHHHHHHHhhCCHH
Q psy12000 256 GSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD---SFNFNFAQAKCALGQYK 332 (507)
Q Consensus 256 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~---~~~~~lg~~~~~~g~~~ 332 (507)
.+...+..+...+ . .-.+.+|..|.+.|.|..|+..++.+.+..|+.+ .++..+..+|..+|-.+
T Consensus 154 dA~~~i~~~~d~L---A---------~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~ 221 (254)
T COG4105 154 DAKARIVKLNDAL---A---------GHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTD 221 (254)
T ss_pred hHHHHHHHHHHHH---H---------HHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChH
Confidence 0000001110000 0 0013578999999999999999999988777653 55677889999999999
Q ss_pred HHHHHHHhh
Q psy12000 333 EAEEMFLLV 341 (507)
Q Consensus 333 ~A~~~~~~~ 341 (507)
+|...-.-+
T Consensus 222 ~a~~~~~vl 230 (254)
T COG4105 222 EAKKTAKVL 230 (254)
T ss_pred HHHHHHHHH
Confidence 998765533
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.68 E-value=1.4e-06 Score=82.35 Aligned_cols=204 Identities=16% Similarity=0.042 Sum_probs=109.9
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCC--CC----hhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPN--PP----EDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD 85 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p--~~----~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (507)
.|.+|-..|++++|...|.++.+..- .+ ...+...+.++... ++++|+.+++++.. +....|+
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~----------~y~~~G~ 109 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIE----------IYREAGR 109 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH----------HHHHCT-
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH----------HHHhcCc
Confidence 56667777777777777776654321 11 12344444444333 66666666655421 1111222
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHhCCc------hhHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12000 86 EKSLMEYHQKLEDSLEEQLCLASIHFLR-CHYQEAIDIYKRILLDHKD------LLALNVYGAMCYYKLDYYDVSQEQVA 158 (507)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~ 158 (507)
...+. ..+..+|.+|... |++++|+++|++++..... ....+..+|.++..+|+|++|++.|+
T Consensus 110 ~~~aA----------~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e 179 (282)
T PF14938_consen 110 FSQAA----------KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYE 179 (282)
T ss_dssp HHHHH----------HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 11111 1156789999998 9999999999999987531 23567789999999999999999999
Q ss_pred HHHhcCCCcH------HHH-HHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHh--HHHHHHHHHh--hccHHHHH
Q psy12000 159 MYLAQKPTSR------IAL-NLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPES--RLNLVIYHLK--QEEHQEAF 227 (507)
Q Consensus 159 ~~l~~~p~~~------~a~-~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~--~~~l~~~~~~--~~~~~~A~ 227 (507)
++....-++. ..+ .....+++..|+.-.|...++++.. ..+.... +.+. ...|...+-. ...+++|+
T Consensus 180 ~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~-~~~~F~~-s~E~~~~~~l~~A~~~~D~e~f~~av 257 (282)
T PF14938_consen 180 EVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS-QDPSFAS-SREYKFLEDLLEAYEEGDVEAFTEAV 257 (282)
T ss_dssp HHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT-TSTTSTT-SHHHHHHHHHHHHHHTT-CCCHHHHC
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCCC-cHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9876432221 112 2233455566777777777766531 1111111 1222 2233333322 34566666
Q ss_pred HHHHhcCCCCh
Q psy12000 228 DLIKNLEPSVP 238 (507)
Q Consensus 228 ~~l~~~~~~~~ 238 (507)
..+..+.+.++
T Consensus 258 ~~~d~~~~ld~ 268 (282)
T PF14938_consen 258 AEYDSISRLDN 268 (282)
T ss_dssp HHHTTSS---H
T ss_pred HHHcccCccHH
Confidence 66666655544
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.67 E-value=6.3e-07 Score=91.00 Aligned_cols=136 Identities=10% Similarity=-0.019 Sum_probs=101.8
Q ss_pred hHHHHHHHhhcC---HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHH--------HHHHHHHhCCCCccccchHHH
Q psy12000 10 AWLGYCHFHLGQ---YKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYL--------QANQILEKVPPSRAKTRLSFH 78 (507)
Q Consensus 10 ~~lg~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--------eA~~~~~~~~~~~~~~~~~~~ 78 (507)
+..|..+...++ ...|+.+|+++++.+|+.+.++-.++.++.....+. .+...+.++...+.
T Consensus 343 ~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~------- 415 (517)
T PRK10153 343 FYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE------- 415 (517)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc-------
Confidence 335776765544 889999999999999999988888888775543322 12222221111000
Q ss_pred HHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12000 79 LSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVA 158 (507)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 158 (507)
....+..+..+|.++...|++++|...+++++..+|+ ..++..+|.++...|++++|++.++
T Consensus 416 -----------------~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 416 -----------------LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred -----------------CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0011233667788888899999999999999999995 7899999999999999999999999
Q ss_pred HHHhcCCCcHHH
Q psy12000 159 MYLAQKPTSRIA 170 (507)
Q Consensus 159 ~~l~~~p~~~~a 170 (507)
+++.++|.+++.
T Consensus 478 ~A~~L~P~~pt~ 489 (517)
T PRK10153 478 TAFNLRPGENTL 489 (517)
T ss_pred HHHhcCCCCchH
Confidence 999999999863
No 160
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.67 E-value=2.8e-07 Score=82.78 Aligned_cols=105 Identities=13% Similarity=0.086 Sum_probs=65.3
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000 9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPE---DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD 85 (507)
Q Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (507)
.|..|..++..|+|..|...|...++..|++. +++|.+|.+++.+|++++|...|..+.+..++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s------------ 211 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS------------ 211 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC------------
Confidence 56677777777777777777777777777653 566667777766666666666665543322211
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHH
Q psy12000 86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLAL 136 (507)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 136 (507)
.+.|+.++.+|.+....|+.++|...|+++++..|+...+
T Consensus 212 -----------~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 212 -----------PKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred -----------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 0123345556666666666666666666666666665544
No 161
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.65 E-value=1.6e-06 Score=77.32 Aligned_cols=184 Identities=16% Similarity=0.137 Sum_probs=125.8
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHhhhhcCCC---chHHHHHHHHHHhhCCHHHHHHHHHhhcccCCC--ch--hhhhhhhc
Q psy12000 285 QCMASSFFLLRSFKDVILYLSSIKSYYTSD---DSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLK--ND--YVYISHLT 357 (507)
Q Consensus 285 ~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~--~~--~~~~~~l~ 357 (507)
+.-|......|+|++|+..|+.+.+..|.. +.+.+.++.++++.+++++|+...++-+...|. +. ..|+..|.
T Consensus 38 Y~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 38 YNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 345778889999999999999999887765 467788999999999999999999997754432 21 11211111
Q ss_pred ccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchh---hh-----
Q psy12000 358 KCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL---AL----- 429 (507)
Q Consensus 358 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~---~~----- 429 (507)
+ +..+.+.. .| ...-.+|+.-|+.++...|++. ++
T Consensus 118 --~------------~~~i~~~~-------------rD----------q~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~ 160 (254)
T COG4105 118 --Y------------FFQIDDVT-------------RD----------QSAARAAFAAFKELVQRYPNSRYAPDAKARIV 160 (254)
T ss_pred --H------------hccCCccc-------------cC----------HHHHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 0 00010000 00 1223566777777777777652 11
Q ss_pred ---------HHHHHhhccccccchhHHHHHHHHHhcCCCchh---hhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCccC
Q psy12000 430 ---------NVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI---ALNLKACNTYKLFTSRAAENQLKPILVSAGPRVRF 497 (507)
Q Consensus 430 ---------~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (507)
...+|..|.+.|.+-.|+..++.+++.+|+.+. ++..+...++.++..+.|.. ..+++...+|++.+
T Consensus 161 ~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~-~~~vl~~N~p~s~~ 239 (254)
T COG4105 161 KLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKK-TAKVLGANYPDSQW 239 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHH-HHHHHHhcCCCCcc
Confidence 123577888888888888888888888888654 56677777788777666666 68888888888877
Q ss_pred CCCcccccC
Q psy12000 498 PPGADFILN 506 (507)
Q Consensus 498 ~~~~~~~~~ 506 (507)
+.++|=+++
T Consensus 240 ~~~~~~~~~ 248 (254)
T COG4105 240 YKDAYRLLQ 248 (254)
T ss_pred hhhhhhccc
Confidence 777765554
No 162
>KOG2053|consensus
Probab=98.65 E-value=0.00066 Score=70.27 Aligned_cols=184 Identities=18% Similarity=0.130 Sum_probs=125.0
Q ss_pred HHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHH
Q psy12000 16 HFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQK 95 (507)
Q Consensus 16 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (507)
....+++.+|..-..++++..|+.+-+....|.++.++|+.++|..+++..........
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~--------------------- 77 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDD--------------------- 77 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCch---------------------
Confidence 45678999999999999999999999999999999999999999977765432221110
Q ss_pred HhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH-HHHH
Q psy12000 96 LEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA-LNLK 174 (507)
Q Consensus 96 l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a-~~~~ 174 (507)
..+-.+-.+|..+|++++|..+|++++..+|. .+..+.+=++|.+-+.|.+-.+.--++-+..|..+.. |...
T Consensus 78 -----~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~ 151 (932)
T KOG2053|consen 78 -----LTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI 151 (932)
T ss_pred -----HHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH
Confidence 00234567899999999999999999999999 7777788889999888877666555555677877652 2333
Q ss_pred hhhhhhccChHH---------HHHhhHHHHHhhCCCCCCC--hhHhHHHHHHHHHhhccHHHHHHHHH
Q psy12000 175 ACNTYKLFTSRA---------AENQLKPILVSILPPLIDV--IPESRLNLVIYHLKQEEHQEAFDLIK 231 (507)
Q Consensus 175 a~~~~~~~~~~~---------A~~~l~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~l~ 231 (507)
+.+.......+. |....++.. ..-.+. ..++.+ .-.++..+|++++|.+.+.
T Consensus 152 Slilqs~~~~~~~~~~i~l~LA~~m~~~~l----~~~gk~~s~aE~~L-yl~iL~~~~k~~eal~~l~ 214 (932)
T KOG2053|consen 152 SLILQSIFSENELLDPILLALAEKMVQKLL----EKKGKIESEAEIIL-YLLILELQGKYQEALEFLA 214 (932)
T ss_pred HHHHHhccCCcccccchhHHHHHHHHHHHh----ccCCccchHHHHHH-HHHHHHhcccHHHHHHHHH
Confidence 333222222222 223333322 111111 122222 2234566899999998773
No 163
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=9.5e-07 Score=80.44 Aligned_cols=104 Identities=16% Similarity=0.062 Sum_probs=81.5
Q ss_pred HHHHHhhcHH---HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCC
Q psy12000 92 YHQKLEDSLE---EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD---YYDVSQEQVAMYLAQKP 165 (507)
Q Consensus 92 ~~~~l~~~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p 165 (507)
....|..+|+ .+..||.+|..+|+++.|...|.+++++.|+++++...+|.+++... ...++...|++++..||
T Consensus 145 Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~ 224 (287)
T COG4235 145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP 224 (287)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence 3445555554 48889999999999999999999999999999988888888766433 35678888888899999
Q ss_pred CcHHHHHHHhhhhhhccChHHHHHhhHHHH
Q psy12000 166 TSRIALNLKACNTYKLFTSRAAENQLKPIL 195 (507)
Q Consensus 166 ~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~ 195 (507)
+++.+..++|..++..|++.+|...++.+.
T Consensus 225 ~~iral~lLA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 225 ANIRALSLLAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 888888888888777777777777776654
No 164
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=1.9e-06 Score=73.96 Aligned_cols=92 Identities=14% Similarity=0.029 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
++..|..|-..|-.+-|.--|.+++.++|+.+++...+|.-+...|+|+.|.+.|+..++.||.+.-+....|...+..|
T Consensus 68 ~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~g 147 (297)
T COG4785 68 LFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG 147 (297)
T ss_pred HHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecC
Confidence 67789999999999999999999999999999999999999999999999999999999999999999888888888999
Q ss_pred ChHHHHHhhHHH
Q psy12000 183 TSRAAENQLKPI 194 (507)
Q Consensus 183 ~~~~A~~~l~~~ 194 (507)
++.-|...+.+.
T Consensus 148 R~~LAq~d~~~f 159 (297)
T COG4785 148 RYKLAQDDLLAF 159 (297)
T ss_pred chHhhHHHHHHH
Confidence 999998877754
No 165
>PRK15331 chaperone protein SicA; Provisional
Probab=98.63 E-value=1.9e-07 Score=77.56 Aligned_cols=108 Identities=15% Similarity=0.115 Sum_probs=85.2
Q ss_pred hcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHh
Q psy12000 310 YYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKL 389 (507)
Q Consensus 310 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 389 (507)
++++.-...|..|.-++.+|++++|...|.-..-.++.+...+
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~------------------------------------- 74 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYT------------------------------------- 74 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH-------------------------------------
Confidence 3333334567789999999999999999987543333222211
Q ss_pred hhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchh
Q psy12000 390 EDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 462 (507)
Q Consensus 390 ~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~ 462 (507)
..||.++...++|++|++.|..+....+++|...++.|.||..+|+.++|+.+|+.+++ .|.++.
T Consensus 75 -------~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 75 -------MGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHH
Confidence 33556777779999999999999999999999999999999999999999999999998 566554
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.62 E-value=4.6e-08 Score=73.93 Aligned_cols=80 Identities=24% Similarity=0.244 Sum_probs=69.0
Q ss_pred HhhHHHHHHHHHHHhhcCCc--hhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHH
Q psy12000 406 RCHYQEAIDIYKRILLDHKD--LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQ 483 (507)
Q Consensus 406 ~~~~~~Ai~~~~~~l~~~p~--~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~ 483 (507)
+|+|++|+.+|++++...|. +....+.+|.||+++|++++|+..+++ ++.+|.++....++|..++.++..+.|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 47899999999999998885 455667789999999999999999999 889999988888999999999999988887
Q ss_pred HHH
Q psy12000 484 LKP 486 (507)
Q Consensus 484 ~~~ 486 (507)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 664
No 167
>KOG0543|consensus
Probab=98.60 E-value=8.3e-07 Score=83.66 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHH
Q psy12000 43 EFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDI 122 (507)
Q Consensus 43 ~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~ 122 (507)
.-..|..+++.|+|..|..-|+++...-... ...+.+.-.... .--...+++++.++.+.++|.+|+..
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~--------~~~~~ee~~~~~---~~k~~~~lNlA~c~lKl~~~~~Ai~~ 279 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYR--------RSFDEEEQKKAE---ALKLACHLNLAACYLKLKEYKEAIES 279 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhcc--------ccCCHHHHHHHH---HHHHHHhhHHHHHHHhhhhHHHHHHH
Confidence 3457889999999999999998874311000 000111100000 00112378999999999999999999
Q ss_pred HHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q psy12000 123 YKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN 172 (507)
Q Consensus 123 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~ 172 (507)
..++|..+|+|..++|..|.++..+|+|+.|+..|+++++.+|+|..+..
T Consensus 280 c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~ 329 (397)
T KOG0543|consen 280 CNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARA 329 (397)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999976544
No 168
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.57 E-value=9.6e-07 Score=71.82 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc---hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHH
Q psy12000 101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKD---LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI---ALNLK 174 (507)
Q Consensus 101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---a~~~~ 174 (507)
..++.-|......|+|++|++.|+.+....|. ...+.+.|+.+|++.|++++|+..++++++++|+++. +++++
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 44788899999999999999999999999884 4578899999999999999999999999999999986 57777
Q ss_pred hhhhhhc
Q psy12000 175 ACNTYKL 181 (507)
Q Consensus 175 a~~~~~~ 181 (507)
|.+++..
T Consensus 91 gL~~~~~ 97 (142)
T PF13512_consen 91 GLSYYEQ 97 (142)
T ss_pred HHHHHHH
Confidence 7776654
No 169
>KOG0543|consensus
Probab=98.56 E-value=1e-06 Score=83.14 Aligned_cols=116 Identities=22% Similarity=0.185 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc---------------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKD---------------LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 167 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 167 (507)
.-.-|..|++.|+|..|...|++++..-+. -..++.|+|.|+.++++|.+|+..++++|..+|+|
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 345789999999999999999998876431 12478899999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccH
Q psy12000 168 RIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEH 223 (507)
Q Consensus 168 ~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 223 (507)
..|++..|.++..++.++.|...|+++++ ..|.+..+...|..+-.+..++
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k-----~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALK-----LEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999998888999999888888753 3444555555555555444433
No 170
>PRK15331 chaperone protein SicA; Provisional
Probab=98.54 E-value=6.9e-07 Score=74.27 Aligned_cols=93 Identities=6% Similarity=-0.055 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL 181 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~ 181 (507)
..+..|.-++.+|++++|..+|+-+...+|.+++.+..||.|+..+++|++|+..|..+...+++++......|.+++.+
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh
Confidence 37889999999999999999999999999999999999999999999999999999999888888876666666666666
Q ss_pred cChHHHHHhhHHH
Q psy12000 182 FTSRAAENQLKPI 194 (507)
Q Consensus 182 ~~~~~A~~~l~~~ 194 (507)
|+.+.|...|+.+
T Consensus 119 ~~~~~A~~~f~~a 131 (165)
T PRK15331 119 RKAAKARQCFELV 131 (165)
T ss_pred CCHHHHHHHHHHH
Confidence 6666666555543
No 171
>PRK11906 transcriptional regulator; Provisional
Probab=98.53 E-value=6.1e-06 Score=79.91 Aligned_cols=142 Identities=16% Similarity=0.194 Sum_probs=107.1
Q ss_pred hHHHHHHHhhc---CHHHHHHHHHHHh---cCCCCChhhHHHHHHHHHhh---c------cHHHHHHHHHhCCCCccccc
Q psy12000 10 AWLGYCHFHLG---QYKQALGIYETLR---HLPNPPEDTEFNIASCYFYL---G------MYLQANQILEKVPPSRAKTR 74 (507)
Q Consensus 10 ~~lg~~~~~~g---~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---g------~~~eA~~~~~~~~~~~~~~~ 74 (507)
+..|...+..+ ..+.|..+|.+++ +.+|....++-.++.|++.. | ...+|.+..+++...++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~--- 335 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT--- 335 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC---
Confidence 44455554433 3567899999999 99999999999999998765 1 11222222222222111
Q ss_pred hHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHH
Q psy12000 75 LSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQ 154 (507)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 154 (507)
.++..+..+|.+....++++.|+..|++++..+|+...+++..|.+..-.|+.++|+
T Consensus 336 -----------------------~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 336 -----------------------VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred -----------------------CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 123346788898899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHhhh
Q psy12000 155 EQVAMYLAQKPTSRIALNLKACN 177 (507)
Q Consensus 155 ~~~~~~l~~~p~~~~a~~~~a~~ 177 (507)
+.++++++.+|.-..+-.++-++
T Consensus 393 ~~i~~alrLsP~~~~~~~~~~~~ 415 (458)
T PRK11906 393 ICIDKSLQLEPRRRKAVVIKECV 415 (458)
T ss_pred HHHHHHhccCchhhHHHHHHHHH
Confidence 99999999999877665555554
No 172
>KOG4234|consensus
Probab=98.50 E-value=4.1e-07 Score=76.92 Aligned_cols=95 Identities=24% Similarity=0.203 Sum_probs=87.0
Q ss_pred HHHHHhHhhHHHHHHHHHHHhhcCCchhh-----hHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhc
Q psy12000 400 ASIHFLRCHYQEAIDIYKRILLDHKDLLA-----LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL 474 (507)
Q Consensus 400 ~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~-----~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~ 474 (507)
|.-.|.+|.|++|..-|..++...|..+. ++.+.|-|..|+++++.|++...++|+++|.+..|+..++-.|-.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 45677889999999999999998877643 5667899999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCC
Q psy12000 475 FTSRAAENQLKPILVSAGPR 494 (507)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~ 494 (507)
.+++.|..+|++|++.+|.+
T Consensus 182 ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hhHHHHHHHHHHHHHhCcch
Confidence 99999999999999999987
No 173
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.49 E-value=1e-06 Score=79.21 Aligned_cols=111 Identities=18% Similarity=0.182 Sum_probs=87.6
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHH
Q psy12000 318 NFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQL 397 (507)
Q Consensus 318 ~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 397 (507)
.|+.|.-+++.|+|.+|...|..-++..|.+... +...+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~-----------------------------------------~nA~y 182 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT-----------------------------------------PNAYY 182 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc-----------------------------------------chhHH
Confidence 5788888888999999999998876655432210 11235
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHhhcCCch---hhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHh
Q psy12000 398 CLASIHFLRCHYQEAIDIYKRILLDHKDL---LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC 469 (507)
Q Consensus 398 ~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~---~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~ 469 (507)
+||..+|.+|+|++|...|..+.+..|+. ++..+.+|.|..++|+.|+|...|+++++.+|+.+.+...+..
T Consensus 183 WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~ 257 (262)
T COG1729 183 WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA 257 (262)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 56777888888999999999888877766 5678899999999999999999999999999999988654433
No 174
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.46 E-value=2.5e-06 Score=82.89 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=92.4
Q ss_pred HHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHH
Q psy12000 15 CHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQ 94 (507)
Q Consensus 15 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (507)
.....++++.|+..|+++.+.+|+ +...++.++...++..+|++.+.++....+..
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d--------------------- 233 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD--------------------- 233 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC---------------------
Confidence 334567889999999998888764 66778888888888888888887765332221
Q ss_pred HHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000 95 KLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL 161 (507)
Q Consensus 95 ~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 161 (507)
.+.+...+..+...++++.|+.+.++++...|+....|+.||.||..+|+++.|+-.++.+-
T Consensus 234 -----~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 234 -----SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 11134567788888999999999999999999999999999999999999999998877653
No 175
>KOG1070|consensus
Probab=98.46 E-value=4.5e-05 Score=81.81 Aligned_cols=204 Identities=13% Similarity=0.060 Sum_probs=162.7
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCc-c---c---c-c-hHHHHHHhcCChhHHHHHHHH
Q psy12000 25 ALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSR-A---K---T-R-LSFHLSHKLGDEKSLMEYHQK 95 (507)
Q Consensus 25 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~-~---~---~-~-~~~~~~~~~~~~~~~~~~~~~ 95 (507)
..+-|++.+..+|+++-.|.....-....++.++|.+.++++.... + . + . +++++-..++.++....-.+.
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 4567888899999999999998888999999999999999986421 1 1 1 1 456666667766555554444
Q ss_pred Hhh-cH--HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHH
Q psy12000 96 LED-SL--EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT--SRIA 170 (507)
Q Consensus 96 l~~-~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~a 170 (507)
..+ +. .-+..|..+|.+.+.+++|.++|+.+++.......+|...|...++.++-++|.+++.++++.-|. +...
T Consensus 1523 Acqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1523 ACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred HHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 332 21 237889999999999999999999999999989999999999999999999999999999999998 5555
Q ss_pred HHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000 171 LNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL 233 (507)
Q Consensus 171 ~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~ 233 (507)
..--|.+.|+.|+.+.+...|+... ...|...+.|.-++..-++.|+.+.+..+|+++
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll-----~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLL-----SAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHH-----hhCccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 5555788899999999988888653 233445578888888888889989998888875
No 176
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.45 E-value=4.2e-06 Score=81.37 Aligned_cols=120 Identities=18% Similarity=0.118 Sum_probs=105.1
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChH
Q psy12000 106 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSR 185 (507)
Q Consensus 106 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~ 185 (507)
+-.+....++++.|+++|+++.+.+|+ +...++.++...++..+|++.+.+.+..+|.+...+...+..++..++++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 445556678999999999999999986 45568999999999999999999999999999888888898899999999
Q ss_pred HHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000 186 AAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL 233 (507)
Q Consensus 186 ~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~ 233 (507)
.|....+++. ...|...+.|..|+.+|...|++++|+-.+...
T Consensus 252 lAL~iAk~av-----~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 252 LALEIAKKAV-----ELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHH-----HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999888765 356777789999999999999999999888754
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.45 E-value=2.4e-06 Score=68.42 Aligned_cols=66 Identities=23% Similarity=0.129 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc---hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKD---LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
.+.+|.++...|+.++|+.+|++++...++ -..++..+|.++..+|++++|+..+++.+...|++.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE 72 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence 678999999999999999999999997643 356889999999999999999999999999988843
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.45 E-value=3.5e-06 Score=67.44 Aligned_cols=99 Identities=21% Similarity=0.146 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHH
Q psy12000 41 DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120 (507)
Q Consensus 41 ~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~ 120 (507)
.++|.+|.++-.+|+.++|+..|+++......... ....++.+|..+...|++++|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-----------------------~~~a~i~lastlr~LG~~deA~ 58 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD-----------------------RRRALIQLASTLRNLGRYDEAL 58 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-----------------------HHHHHHHHHHHHHHcCCHHHHH
Confidence 46778888888888888888888877543221100 0112567888999999999999
Q ss_pred HHHHHHHHhCCc---hhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 121 DIYKRILLDHKD---LLALNVYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 121 ~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
..+++.+...|+ +..+...++.+....|+.++|++.+-..+.
T Consensus 59 ~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 59 ALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999988887 777888889999999999999988876653
No 179
>KOG3616|consensus
Probab=98.43 E-value=0.00043 Score=69.83 Aligned_cols=306 Identities=13% Similarity=0.079 Sum_probs=176.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccCh
Q psy12000 105 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTS 184 (507)
Q Consensus 105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~ 184 (507)
.-|.-+...|+++.|+..|-++-- ....-.+-+...+|.+|+.+++.+...+.... .+-..+.-+...|++
T Consensus 711 ~wg~hl~~~~q~daainhfiea~~--------~~kaieaai~akew~kai~ildniqdqk~~s~-yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 711 AWGDHLEQIGQLDAAINHFIEANC--------LIKAIEAAIGAKEWKKAISILDNIQDQKTASG-YYGEIADHYANKGDF 781 (1636)
T ss_pred HHhHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHHhhhhhhhhhHhHHHHhhhhccccc-cchHHHHHhccchhH
Confidence 457777888999999998866421 11122345667899999999887765543322 122334445567889
Q ss_pred HHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHH
Q psy12000 185 RAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAA 264 (507)
Q Consensus 185 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 264 (507)
+.|++.|.+. .....-..+|-+.|++.+|..+..+...... .+ ..|....+.....+.|.+|
T Consensus 782 e~ae~lf~e~-------------~~~~dai~my~k~~kw~da~kla~e~~~~e~--t~---~~yiakaedldehgkf~ea 843 (1636)
T KOG3616|consen 782 EIAEELFTEA-------------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEA--TI---SLYIAKAEDLDEHGKFAEA 843 (1636)
T ss_pred HHHHHHHHhc-------------chhHHHHHHHhccccHHHHHHHHHHhcCchh--HH---HHHHHhHHhHHhhcchhhh
Confidence 9999887753 1122345678899999999998877632211 11 1222222233334566677
Q ss_pred HHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCC-chHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000 265 QALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSD-DSFNFNFAQAKCALGQYKEAEEMFLLVQN 343 (507)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~~~~ 343 (507)
+++|-.++.+ +. -..+|-+-|.+++.+.+..+ ..|+. ...+..+|.-|...|+...|...|.++.+
T Consensus 844 eqlyiti~~p----~~------aiqmydk~~~~ddmirlv~k---~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 844 EQLYITIGEP----DK------AIQMYDKHGLDDDMIRLVEK---HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred hheeEEccCc----hH------HHHHHHhhCcchHHHHHHHH---hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 6665433322 11 13456666666666654333 33433 34567789999999999999999988743
Q ss_pred cCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcH--H--HHHHHHHhhhcHHHH------HHHHHHHH--hHhhHHH
Q psy12000 344 EGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEK--S--LMEYHQKLEDSLEEQ------LCLASIHF--LRCHYQE 411 (507)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~--~~~~~~~l~~~~~~~------~~l~~~~~--~~~~~~~ 411 (507)
-. .. ...|...+-|+.|+.+....+... + +.-+.+.++...... +..+.+.+ ..+-|+-
T Consensus 911 ~k--aa-------vnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~ 981 (1636)
T KOG3616|consen 911 FK--AA-------VNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDF 981 (1636)
T ss_pred HH--HH-------HHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhh
Confidence 21 10 113334456677777665544322 1 111222222110000 11112222 1244555
Q ss_pred HHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCch
Q psy12000 412 AIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 461 (507)
Q Consensus 412 Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~ 461 (507)
|.+.-+-+.+.. .+.++..+|+-+..-|++++|-+.|-.+++++.-|.
T Consensus 982 afdlari~~k~k--~~~vhlk~a~~ledegk~edaskhyveaiklntyni 1029 (1636)
T KOG3616|consen 982 AFDLARIAAKDK--MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred HHHHHHHhhhcc--CccchhHHhhhhhhccchhhhhHhhHHHhhcccccc
Confidence 655555444432 345667788888889999999999988888875544
No 180
>KOG1941|consensus
Probab=98.42 E-value=0.00011 Score=68.11 Aligned_cols=310 Identities=15% Similarity=0.120 Sum_probs=178.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL---ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY 179 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~ 179 (507)
++..|.-++...++++|+..+.+.+..-.+.. ..+-.+..+...+|.|++++..--..+...-+-
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~------------ 76 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL------------ 76 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH------------
Confidence 55677788888999999999999887655432 344456678888888888876533322111000
Q ss_pred hccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc--CC-CCh-----HHHHHHHHHHHHh
Q psy12000 180 KLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL--EP-SVP-----QEYILKAVVQVTI 251 (507)
Q Consensus 180 ~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~--~~-~~~-----~~~~~~~~~~~~~ 251 (507)
+++ ...-+++++++..+-+.-++.+++.+.+.- .| ..+ ......+.++..+
T Consensus 77 -----~ds----------------~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgl 135 (518)
T KOG1941|consen 77 -----EDS----------------DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGL 135 (518)
T ss_pred -----HHH----------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhH
Confidence 000 111256777887777777777777665421 11 111 1222334444444
Q ss_pred hhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcC----CC------chHHHHH
Q psy12000 252 GQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYT----SD------DSFNFNF 321 (507)
Q Consensus 252 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~----~~------~~~~~~l 321 (507)
+..+.+.+.|+.|..+-....+.-.+ ......||..+...+++++|+-+..++..+-. ++ ..++|.+
T Consensus 136 s~fq~~Lesfe~A~~~A~~~~D~~LE---lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhm 212 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAHNNDDAMLE---LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHM 212 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceee---eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHH
Confidence 44444444455554444333222222 23344689999999999999988777654322 22 2456778
Q ss_pred HHHHHhhCCHHHHHHHHHhhccc--CCCchhhh---hhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhc---H
Q psy12000 322 AQAKCALGQYKEAEEMFLLVQNE--GLKNDYVY---ISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDS---L 393 (507)
Q Consensus 322 g~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~---~ 393 (507)
+.++..+|..-.|.++.+++.+. ...+...+ +..+++.|-..++.+.||..|...- .....+++. +
T Consensus 213 aValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am------~~m~~~gdrmgqv 286 (518)
T KOG1941|consen 213 AVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM------GTMASLGDRMGQV 286 (518)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH------HHHhhhhhhHHHH
Confidence 99999999999999999887432 23333333 2345777888888888887765421 111111111 0
Q ss_pred HHH----HHHHHHH-HhHhhHHHHHHHHHHHhhcCC----ch--hhhHHHHHhhccccccchhHHHHHHHHH
Q psy12000 394 EEQ----LCLASIH-FLRCHYQEAIDIYKRILLDHK----DL--LALNVYGAMCYYKLDYYDVSQEQVAMYL 454 (507)
Q Consensus 394 ~~~----~~l~~~~-~~~~~~~~Ai~~~~~~l~~~p----~~--~~~~~~la~~y~~~g~~~~A~~~~~~~l 454 (507)
+.. .++...- ...+.-=+|++.-+++++.-. +. .+++-.++.+|..+|..|+=...+..+-
T Consensus 287 ~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~ 358 (518)
T KOG1941|consen 287 EALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAH 358 (518)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 000 0110000 001112347777777775332 22 3466778999999988877665555443
No 181
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=6.4e-06 Score=70.79 Aligned_cols=65 Identities=11% Similarity=0.203 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 105 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
.+|.-+...|+|+.|.+.|+.+++.+|.+.-+..+.|...+--|+++-|.+-+.+.-+.||++|.
T Consensus 104 yLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 104 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred HHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 34444444455555555555555555555555555555555555555555555555555555544
No 182
>KOG3617|consensus
Probab=98.30 E-value=0.00058 Score=69.88 Aligned_cols=352 Identities=11% Similarity=0.037 Sum_probs=183.1
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhh-c-HHHH
Q psy12000 26 LGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLED-S-LEEQ 103 (507)
Q Consensus 26 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~ 103 (507)
.+.++++.+ +|++. --..|.+...+|..++|...|++...-+. +-.+....+....+.+..+.-.. . ...+
T Consensus 789 aRAlR~a~q-~~~e~--eakvAvLAieLgMlEeA~~lYr~ckR~DL----lNKlyQs~g~w~eA~eiAE~~DRiHLr~Ty 861 (1416)
T KOG3617|consen 789 ARALRRAQQ-NGEED--EAKVAVLAIELGMLEEALILYRQCKRYDL----LNKLYQSQGMWSEAFEIAETKDRIHLRNTY 861 (1416)
T ss_pred HHHHHHHHh-CCcch--hhHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHhcccHHHHHHHHhhccceehhhhH
Confidence 344555543 44432 34567777888999999988887753222 22233333333222221111100 0 1127
Q ss_pred HHHHHHHHHhhcHHHHHHHHHH----------HHHhCCchh----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKR----------ILLDHKDLL----------ALNVYGAMCYYKLDYYDVSQEQVAMYLAQ 163 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~----------~l~~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 163 (507)
++.|.-+...++.+.|+++|++ +|..+|... ..+.--|.-....|+.|.|+.+|..+-..
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~ 941 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY 941 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh
Confidence 7888888888999999999987 344455332 33444466667788888888888876432
Q ss_pred CCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCC--------
Q psy12000 164 KPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP-------- 235 (507)
Q Consensus 164 ~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~-------- 235 (507)
+-...|++-+|+.++|...-+.. -+.-+-+.||..|-..|++.+|+..+.+...
T Consensus 942 --------fs~VrI~C~qGk~~kAa~iA~es----------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlc 1003 (1416)
T KOG3617|consen 942 --------FSMVRIKCIQGKTDKAARIAEES----------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLC 1003 (1416)
T ss_pred --------hhheeeEeeccCchHHHHHHHhc----------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334666778887776432211 1223567888899999999999877754311
Q ss_pred --CChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHH-HHH-------
Q psy12000 236 --SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVIL-YLS------- 305 (507)
Q Consensus 236 --~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~-~~~------- 305 (507)
.+-.+. +...++..- ....-.|..||...+... ..--..|.+.|.+.+|++ .|.
T Consensus 1004 KEnd~~d~-L~nlal~s~------~~d~v~aArYyEe~g~~~---------~~AVmLYHkAGm~~kALelAF~tqQf~aL 1067 (1416)
T KOG3617|consen 1004 KENDMKDR-LANLALMSG------GSDLVSAARYYEELGGYA---------HKAVMLYHKAGMIGKALELAFRTQQFSAL 1067 (1416)
T ss_pred HhcCHHHH-HHHHHhhcC------chhHHHHHHHHHHcchhh---------hHHHHHHHhhcchHHHHHHHHhhcccHHH
Confidence 011100 000011110 122334445554332110 011245777788888886 332
Q ss_pred -H-hhhhcCCC-chHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcH--
Q psy12000 306 -S-IKSYYTSD-DSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEK-- 380 (507)
Q Consensus 306 -~-~~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 380 (507)
- +...+|.. +..+..-+.-.....+|++|...+-.+.+. ...|.-|..++ ..---++...+....
T Consensus 1068 ~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~--------~~AlqlC~~~n--v~vtee~aE~mTp~Kd~ 1137 (1416)
T KOG3617|consen 1068 DLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF--------SGALQLCKNRN--VRVTEEFAELMTPTKDD 1137 (1416)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------HHHHHHHhcCC--CchhHHHHHhcCcCcCC
Confidence 1 12334443 333333455666667788888877654321 11222232221 111122333332211
Q ss_pred -----HHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhH
Q psy12000 381 -----SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVS 446 (507)
Q Consensus 381 -----~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A 446 (507)
.-...+.. ++....++|.|.-|-+-|.++-.. ..+ . .++.|.|+.++=
T Consensus 1138 ~~~e~~R~~vLeq----------vae~c~qQG~Yh~AtKKfTQAGdK----l~A--M--raLLKSGdt~KI 1190 (1416)
T KOG3617|consen 1138 MPNEQERKQVLEQ----------VAELCLQQGAYHAATKKFTQAGDK----LSA--M--RALLKSGDTQKI 1190 (1416)
T ss_pred CccHHHHHHHHHH----------HHHHHHhccchHHHHHHHhhhhhH----HHH--H--HHHHhcCCcceE
Confidence 11222222 234556778999999888887542 111 1 245688888764
No 183
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.29 E-value=2.5e-06 Score=63.37 Aligned_cols=61 Identities=26% Similarity=0.250 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhC-------CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDH-------KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ 163 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 163 (507)
+..+|.+|..+|+|++|+++|++++... |+...++.++|.|+..+|++++|++++++++++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6789999999999999999999999762 233568899999999999999999999998754
No 184
>KOG4234|consensus
Probab=98.29 E-value=1.6e-05 Score=67.43 Aligned_cols=105 Identities=19% Similarity=0.116 Sum_probs=77.4
Q ss_pred HHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy12000 45 NIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYK 124 (507)
Q Consensus 45 ~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~ 124 (507)
.=|.-++..|+|++|..-|..+....+.... ...+ -.+.+.|.+..+++.++.||....
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~---------------e~rs------Ily~Nraaa~iKl~k~e~aI~dcs 158 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTST---------------EERS------ILYSNRAAALIKLRKWESAIEDCS 158 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccH---------------HHHH------HHHhhhHHHHHHhhhHHHHHHHHH
Confidence 3455566777777777666655432221100 0000 014567788888999999999999
Q ss_pred HHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12000 125 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA 170 (507)
Q Consensus 125 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a 170 (507)
++|+++|.+..+....|.+|.++.+|++|++-|++++..+|....+
T Consensus 159 Kaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 159 KAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred hhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 9999999999999999999999999999999999999999987644
No 185
>KOG4648|consensus
Probab=98.28 E-value=8.2e-07 Score=81.22 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=92.8
Q ss_pred HHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChH
Q psy12000 399 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSR 478 (507)
Q Consensus 399 l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~ 478 (507)
.|..++.+|+|++||++|.+.+..+|.++-.+.+.|++|+++.+|..|...+..++.++--...|+..++...+.++.-.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCccC
Q psy12000 479 AAENQLKPILVSAGPRVRF 497 (507)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~ 497 (507)
.|..++...++..|.+-+|
T Consensus 183 EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHhHHHHHhhCcccHHH
Confidence 9999999999999987443
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.27 E-value=1.4e-05 Score=81.41 Aligned_cols=72 Identities=11% Similarity=0.042 Sum_probs=60.8
Q ss_pred HHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhh
Q psy12000 399 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY 472 (507)
Q Consensus 399 l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~ 472 (507)
++.++...|++++|...+++++..+|. ...+..+|.++...|++++|++.|++++.++|.+|+ +.+--++-|
T Consensus 426 la~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt-~~~~~~~~f 497 (517)
T PRK10153 426 LAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT-LYWIENLVF 497 (517)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-HHHHHhccc
Confidence 445566679999999999999999995 678889999999999999999999999999999996 444444444
No 187
>KOG3617|consensus
Probab=98.25 E-value=0.00091 Score=68.50 Aligned_cols=254 Identities=12% Similarity=-0.000 Sum_probs=134.7
Q ss_pred hhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHh
Q psy12000 18 HLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLE 97 (507)
Q Consensus 18 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 97 (507)
..|+.+.|.+..+-+ .+..+|-++|....+-.+.+-|..++-..... .-..+.....
T Consensus 740 tiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~a------------------RgaRAlR~a~ 796 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNA------------------RGARALRRAQ 796 (1416)
T ss_pred EeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhh------------------hhHHHHHHHH
Confidence 457777776665433 12347788888777777777776654332110 0000111111
Q ss_pred hcH-HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000 98 DSL-EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC 176 (507)
Q Consensus 98 ~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~ 176 (507)
+++ ++-...|.+-...|-.++|..+|++--..+ .+-..|...|.|++|.++.+.=-.++-.+ .++.+|.
T Consensus 797 q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~--Tyy~yA~ 866 (1416)
T KOG3617|consen 797 QNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFEIAETKDRIHLRN--TYYNYAK 866 (1416)
T ss_pred hCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHHHHHhhccceehhh--hHHHHHH
Confidence 112 233445666677788888988888753322 34567788889999888755422222211 2333333
Q ss_pred hhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccC
Q psy12000 177 NTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTG 256 (507)
Q Consensus 177 ~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~ 256 (507)
-+-..++.+.|++.|++... + .++ +.--..++-.+++.+-+- ..++. .+..-|++.+
T Consensus 867 ~Lear~Di~~AleyyEK~~~---------h---afe---v~rmL~e~p~~~e~Yv~~-~~d~~-------L~~WWgqYlE 923 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGV---------H---AFE---VFRMLKEYPKQIEQYVRR-KRDES-------LYSWWGQYLE 923 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCC---------h---HHH---HHHHHHhChHHHHHHHHh-ccchH-------HHHHHHHHHh
Confidence 33344566666666655310 0 000 011122333333333221 11222 2233344444
Q ss_pred cHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHH
Q psy12000 257 SREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEE 336 (507)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 336 (507)
..+.++.|+.+|....+ ++.+-.+..-+|+.++|-.+-+. ..+..+.|.+|..|...|+.-+|+.
T Consensus 924 S~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~ 988 (1416)
T KOG3617|consen 924 SVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVK 988 (1416)
T ss_pred cccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHH
Confidence 44555555555543211 22344555667888887664433 2344678889999999999999999
Q ss_pred HHHhhc
Q psy12000 337 MFLLVQ 342 (507)
Q Consensus 337 ~~~~~~ 342 (507)
.|.++.
T Consensus 989 FfTrAq 994 (1416)
T KOG3617|consen 989 FFTRAQ 994 (1416)
T ss_pred HHHHHH
Confidence 998764
No 188
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.24 E-value=3.9e-06 Score=81.11 Aligned_cols=64 Identities=13% Similarity=0.063 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHH---HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000 100 LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLAL---NVYGAMCYYKLDYYDVSQEQVAMYLAQ 163 (507)
Q Consensus 100 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~ 163 (507)
++.++++|.+|+..|+|++|+..|+++|..+|++.++ ++++|.||..+|++++|+..+++++..
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4558999999999999999999999999999999865 999999999999999999999999987
No 189
>KOG1941|consensus
Probab=98.20 E-value=0.00057 Score=63.57 Aligned_cols=63 Identities=13% Similarity=0.109 Sum_probs=45.5
Q ss_pred CCCCccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChh---hHHHHHHHHHhhccHHHHHHHH
Q psy12000 1 MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPED---TEFNIASCYFYLGMYLQANQIL 63 (507)
Q Consensus 1 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~eA~~~~ 63 (507)
||-.-..-...-|.-.+...++++|+....+.+..-.+... .+-.+..+...+|.|++++...
T Consensus 1 mgq~q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a 66 (518)
T KOG1941|consen 1 MGQDQTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFA 66 (518)
T ss_pred CccchhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHH
Confidence 44444555566788899999999999999998876443322 3344667788889999888754
No 190
>PRK11906 transcriptional regulator; Provisional
Probab=98.18 E-value=3.7e-05 Score=74.60 Aligned_cols=154 Identities=14% Similarity=0.129 Sum_probs=112.0
Q ss_pred HHHHHHHHHHhh---hhcCCCchHHHHHHHHHHhh---------CCHHHHHHHHHhhcccCCCchhhhhhhhcccCccch
Q psy12000 297 FKDVILYLSSIK---SYYTSDDSFNFNFAQAKCAL---------GQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRA 364 (507)
Q Consensus 297 ~~~Ai~~~~~~~---~~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 364 (507)
.+.|+.+|.++. ..+|+...++-.++.|++.. ....+|.+.-+++++.++.+...
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a------------- 340 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKI------------- 340 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHH-------------
Confidence 456777888888 77777766666677776653 12233444444444433322211
Q ss_pred hhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccch
Q psy12000 365 KTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYD 444 (507)
Q Consensus 365 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~ 444 (507)
...+|.+....++++.|+..|++++..+|++..++++.|++..-.|+.+
T Consensus 341 -------------------------------~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~ 389 (458)
T PRK11906 341 -------------------------------LAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE 389 (458)
T ss_pred -------------------------------HHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Confidence 1223445556678999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCchhhhhHHHhh-hhhcCChHHHHHHHHHHHHhCCCC
Q psy12000 445 VSQEQVAMYLAQKPTSRIALNLKACN-TYKLFTSRAAENQLKPILVSAGPR 494 (507)
Q Consensus 445 ~A~~~~~~~l~~~P~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
+|++.+++++++.|--..+-.++.|+ +|-..--+.+++.|-+--++...|
T Consensus 390 ~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (458)
T PRK11906 390 EARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESESHR 440 (458)
T ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccccccch
Confidence 99999999999999999999999999 776566777888665544444333
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.17 E-value=0.00021 Score=60.18 Aligned_cols=145 Identities=19% Similarity=0.131 Sum_probs=112.8
Q ss_pred hcCChhHHHHHHHHHhhcH--HHHHHHHHHHHHhhcHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12000 82 KLGDEKSLMEYHQKLEDSL--EEQLCLASIHFLRCHYQEAIDIYKRILLD-HKDLLALNVYGAMCYYKLDYYDVSQEQVA 158 (507)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 158 (507)
.+..+..+.++.+.+...| .+.+.||......|++.||...|++++.- .-+++..+..+|...+..+++..|...++
T Consensus 69 ~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 69 KLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred hcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3333444555555555444 34889999999999999999999999864 45788889999999999999999999999
Q ss_pred HHHhcCCCcH--HHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000 159 MYLAQKPTSR--IALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN 232 (507)
Q Consensus 159 ~~l~~~p~~~--~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~ 232 (507)
++.+-+|... ....+.+..+--.|.+.+|+..|+-.+. .+ ..++++...+..+.++|+.++|-..+..
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~-~y-----pg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAIS-YY-----PGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH-hC-----CCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 9999888654 3566778888888999999999887652 21 1346777788888899988888665543
No 192
>KOG3616|consensus
Probab=98.17 E-value=0.0042 Score=63.03 Aligned_cols=153 Identities=18% Similarity=0.153 Sum_probs=89.7
Q ss_pred HHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHH
Q psy12000 290 SFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLS 369 (507)
Q Consensus 290 ~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 369 (507)
.....+++.+|+.+++.+...... ..++-..+.-|...|+|+-|.+.|.++--.. + -...|-+.|+|+.|
T Consensus 741 aai~akew~kai~ildniqdqk~~-s~yy~~iadhyan~~dfe~ae~lf~e~~~~~--d-------ai~my~k~~kw~da 810 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTA-SGYYGEIADHYANKGDFEIAEELFTEADLFK--D-------AIDMYGKAGKWEDA 810 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccc-cccchHHHHHhccchhHHHHHHHHHhcchhH--H-------HHHHHhccccHHHH
Confidence 344567888888877766543322 2344557888999999999999998752111 0 12245567888888
Q ss_pred HHHHHHcCCcHHHH-HHHHHhhhcHHHH--HHHH-HHHHhHhhHHHHHHHHHHHh----------hcCCchh-hhHHHHH
Q psy12000 370 FHLSHKLGDEKSLM-EYHQKLEDSLEEQ--LCLA-SIHFLRCHYQEAIDIYKRIL----------LDHKDLL-ALNVYGA 434 (507)
Q Consensus 370 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~--~~l~-~~~~~~~~~~~Ai~~~~~~l----------~~~p~~~-~~~~~la 434 (507)
+.+..+-......+ .++.+.. ..+.+ ..-+ ..|..-|..+.||..|++.- +..|+.. +.+..+|
T Consensus 811 ~kla~e~~~~e~t~~~yiakae-dldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~ 889 (1636)
T KOG3616|consen 811 FKLAEECHGPEATISLYIAKAE-DLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFA 889 (1636)
T ss_pred HHHHHHhcCchhHHHHHHHhHH-hHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHH
Confidence 88877754443322 2222211 11111 1111 12223366777888777642 2345543 4666778
Q ss_pred hhccccccchhHHHHHHHH
Q psy12000 435 MCYYKLDYYDVSQEQVAMY 453 (507)
Q Consensus 435 ~~y~~~g~~~~A~~~~~~~ 453 (507)
.-|...|+...|...|-++
T Consensus 890 ~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 890 KELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHhccChhHHHHHHHhh
Confidence 8888888888887665433
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.13 E-value=0.00019 Score=60.40 Aligned_cols=165 Identities=15% Similarity=0.123 Sum_probs=113.7
Q ss_pred cHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhh-hcCCCchHHHHHHHHHHhhCCHHHHH
Q psy12000 257 SREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKS-YYTSDDSFNFNFAQAKCALGQYKEAE 335 (507)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~ 335 (507)
...++.+|.+-+... .+...+..||..+...|++.+|...|.++.. ...+++..++.++.+.+..+++..|.
T Consensus 72 P~R~~Rea~~~~~~A-------pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~ 144 (251)
T COG4700 72 PERHLREATEELAIA-------PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQ 144 (251)
T ss_pred hhHHHHHHHHHHhhc-------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHH
Confidence 334555555544321 1344567899999999999999998887664 44567778888999999999999999
Q ss_pred HHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHH
Q psy12000 336 EMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDI 415 (507)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~ 415 (507)
..++++.+.++.- .+++..+.++.++-..|++++|...
T Consensus 145 ~tLe~l~e~~pa~------------------------------------------r~pd~~Ll~aR~laa~g~~a~Aesa 182 (251)
T COG4700 145 QTLEDLMEYNPAF------------------------------------------RSPDGHLLFARTLAAQGKYADAESA 182 (251)
T ss_pred HHHHHHhhcCCcc------------------------------------------CCCCchHHHHHHHHhcCCchhHHHH
Confidence 9999987544310 0111223444555667899999999
Q ss_pred HHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHH----hcCCCchhhhhHHHhhhhh
Q psy12000 416 YKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL----AQKPTSRIALNLKACNTYK 473 (507)
Q Consensus 416 ~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l----~~~P~~~~a~~~~~~~~~~ 473 (507)
|+.++...|+....-+ .+.-+.++|+.++|...+..+. +..|-.. ...++|+.+.
T Consensus 183 fe~a~~~ypg~~ar~~-Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~r--kh~reW~~~A 241 (251)
T COG4700 183 FEVAISYYPGPQARIY-YAEMLAKQGRLREANAQYVAVVDTAKRSRPHYR--KHHREWIKTA 241 (251)
T ss_pred HHHHHHhCCCHHHHHH-HHHHHHHhcchhHHHHHHHHHHHHHHhcchhHH--HHHHHHHHHH
Confidence 9999999998765333 3566779999999887665554 3444333 3456666553
No 194
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.10 E-value=4.3e-05 Score=64.30 Aligned_cols=98 Identities=13% Similarity=0.138 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHH
Q psy12000 22 YKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLE 101 (507)
Q Consensus 22 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (507)
|+.|.+.++.....+|.+++.+++-|..+..+.++...-+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~e---------------------------------------- 46 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPE---------------------------------------- 46 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHH----------------------------------------
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcch----------------------------------------
Confidence 6788899998889999999999999988877666532211
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhcCCCcHH
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY-----------YDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~~l~~~p~~~~ 169 (507)
...-+++|++-|+++|.++|+..++++.+|.+|...+. |++|.++|+++...+|++..
T Consensus 47 ----------s~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 47 ----------SKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp ----------HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred ----------HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 11236789999999999999999999999999987664 88899999999999999985
No 195
>KOG2796|consensus
Probab=98.05 E-value=5.3e-05 Score=67.22 Aligned_cols=138 Identities=16% Similarity=0.228 Sum_probs=110.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHH
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLP-NPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLM 90 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (507)
+..++..+|.|.-....+.++++.+ |..+.....+|++.++-|+.+.|..+|+.+.+.... +.
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k----------L~------ 246 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK----------LD------ 246 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh----------hh------
Confidence 5667888899999999999999987 556677778999999999999999988865321100 00
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 91 EYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 91 ~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
.+........+.+.+|..+++|.+|...|.+++..+|.++.+..+.|.|.+.+|+...|++.++.++...|....
T Consensus 247 ----~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 247 ----GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred ----ccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 000001114567889999999999999999999999999999999999999999999999999999999998653
No 196
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.05 E-value=0.00096 Score=60.29 Aligned_cols=49 Identities=27% Similarity=0.285 Sum_probs=29.9
Q ss_pred hcCHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhhccHHHHHHHHHhCC
Q psy12000 19 LGQYKQALGIYETLRHLPNPP--EDTEFNIASCYFYLGMYLQANQILEKVP 67 (507)
Q Consensus 19 ~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~~~ 67 (507)
.+.+..+...+...+...+.. .......+..+...+++..+...+....
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKAL 86 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 355666666666666666552 4555666666666666666666665543
No 197
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.02 E-value=1.1e-05 Score=52.12 Aligned_cols=40 Identities=23% Similarity=-0.066 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAM 142 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 142 (507)
++.+|.+|...|++++|+..|+++++.+|+++.++..+|.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 5567777777777777777777777777777777776664
No 198
>KOG4648|consensus
Probab=98.00 E-value=3.5e-05 Score=70.82 Aligned_cols=104 Identities=18% Similarity=0.081 Sum_probs=76.1
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHH
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLME 91 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (507)
-|+.||.+|+|++||.+|.+.+..+|.++-.+.+.|..|++++.|..|+..+..+...+. .
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~---~---------------- 163 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK---L---------------- 163 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH---H----------------
Confidence 588888999999999999999888998888888888888888888888877665532110 0
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHH
Q psy12000 92 YHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGA 141 (507)
Q Consensus 92 ~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 141 (507)
....+...|..-...|...+|-+-++.+|...|++.+..-..+
T Consensus 164 -------Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 164 -------YVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred -------HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 0111344566667778888888888888888888766554433
No 199
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.00 E-value=9.5e-06 Score=52.48 Aligned_cols=42 Identities=17% Similarity=-0.005 Sum_probs=39.3
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHH
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIAS 48 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 48 (507)
.+.+.+|..|..+|++++|++.|+++++.+|+++++|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467789999999999999999999999999999999999886
No 200
>KOG2796|consensus
Probab=97.96 E-value=0.0006 Score=60.70 Aligned_cols=141 Identities=18% Similarity=0.241 Sum_probs=109.2
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHhhhhc-CCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccc
Q psy12000 285 QCMASSFFLLRSFKDVILYLSSIKSYY-TSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSR 363 (507)
Q Consensus 285 ~~la~~~~~~~~~~~Ai~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 363 (507)
.++..++.-.|.|.-.+..++++.+.+ |.++...-.||.+-++.|+.+.|..+|+++-+..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~------------------ 242 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT------------------ 242 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH------------------
Confidence 467888888999999999999988776 4566777779999999999999999999764211
Q ss_pred hhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccc
Q psy12000 364 AKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYY 443 (507)
Q Consensus 364 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~ 443 (507)
.++......+..+ ...+.++...++|..|.-.|++++..+|.++-+..+.|.|..-+|+.
T Consensus 243 ----------~kL~~~q~~~~V~----------~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 243 ----------QKLDGLQGKIMVL----------MNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred ----------hhhhccchhHHHH----------hhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 0000000000001 11234566668999999999999999999999989999999999999
Q ss_pred hhHHHHHHHHHhcCCCchhh
Q psy12000 444 DVSQEQVAMYLAQKPTSRIA 463 (507)
Q Consensus 444 ~~A~~~~~~~l~~~P~~~~a 463 (507)
..|++.++.++++.|....-
T Consensus 303 ~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 303 KDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred HHHHHHHHHHhccCCccchh
Confidence 99999999999999997654
No 201
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.96 E-value=2.6e-05 Score=75.58 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=61.6
Q ss_pred cccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCch---HHHHHHHHHHhhCCHHHHHHHHHhhccc
Q psy12000 277 ECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDS---FNFNFAQAKCALGQYKEAEEMFLLVQNE 344 (507)
Q Consensus 277 ~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~---~~~~lg~~~~~~g~~~~A~~~~~~~~~~ 344 (507)
+|+...++..+|.+|+..|+|++|+..|++++..+|++.. +++|+|.+|..+|++++|+++|++++..
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556667788999999999999999999999999999874 4899999999999999999999999875
No 202
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.95 E-value=1.2e-05 Score=59.64 Aligned_cols=59 Identities=27% Similarity=0.275 Sum_probs=48.9
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHhhc----C---CchhhhHHHHHhhccccccchhHHHHHHHHHhc
Q psy12000 398 CLASIHFLRCHYQEAIDIYKRILLD----H---KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ 456 (507)
Q Consensus 398 ~l~~~~~~~~~~~~Ai~~~~~~l~~----~---p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~ 456 (507)
.+|.+++..|+|++|+++|+++++. . |+....+.++|.+|..+|++++|++.+++++++
T Consensus 10 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 10 NLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567888889999999999999852 2 333557889999999999999999999999876
No 203
>KOG4642|consensus
Probab=97.95 E-value=3.7e-05 Score=67.20 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=82.7
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccCh
Q psy12000 105 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTS 184 (507)
Q Consensus 105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~ 184 (507)
.-|.-++...+|+.|++.|.++|.++|..+..+.+.|.||+++++|+.+.....++++.+|+...+.+.++........+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 35677788899999999999999999999999999999999999999999999999999999999988888888888888
Q ss_pred HHHHHhhHHHH
Q psy12000 185 RAAENQLKPIL 195 (507)
Q Consensus 185 ~~A~~~l~~~~ 195 (507)
+.|+..++...
T Consensus 95 ~eaI~~Lqra~ 105 (284)
T KOG4642|consen 95 DEAIKVLQRAY 105 (284)
T ss_pred cHHHHHHHHHH
Confidence 88888877653
No 204
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.94 E-value=0.0024 Score=57.56 Aligned_cols=200 Identities=19% Similarity=0.167 Sum_probs=122.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHH--hCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh-hhh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILL--DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC-NTY 179 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~-~~~ 179 (507)
....+..+...+++..++..+...+. ..+.....+..++.++...+++.++++.+...+...+........... ++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 45566777777788888888877776 566777777777888888888888888888877766665333222233 444
Q ss_pred hccChHHHHHhhHHHHHhhCCCCCC---ChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccC
Q psy12000 180 KLFTSRAAENQLKPILVSILPPLID---VIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTG 256 (507)
Q Consensus 180 ~~~~~~~A~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~ 256 (507)
..++++.|...+..... ..+ .........+..+...+++++|+..+.+.....+..
T Consensus 142 ~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------- 200 (291)
T COG0457 142 ELGDYEEALELYEKALE-----LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD---------------- 200 (291)
T ss_pred HcCCHHHHHHHHHHHHh-----cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc----------------
Confidence 55555555555554321 111 111222223333344444444444443321111100
Q ss_pred cHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHH
Q psy12000 257 SREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEE 336 (507)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 336 (507)
.......++.++...+++++|+..+..+....|........++..+...|.++++..
T Consensus 201 -----------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (291)
T COG0457 201 -----------------------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALE 257 (291)
T ss_pred -----------------------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHH
Confidence 112233567888888899999999888888777644456667877777778999999
Q ss_pred HHHhhcccCC
Q psy12000 337 MFLLVQNEGL 346 (507)
Q Consensus 337 ~~~~~~~~~~ 346 (507)
.+.+++...+
T Consensus 258 ~~~~~~~~~~ 267 (291)
T COG0457 258 ALEKALELDP 267 (291)
T ss_pred HHHHHHHhCc
Confidence 9988875543
No 205
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.93 E-value=8.6e-06 Score=49.11 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=31.4
Q ss_pred HHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHH
Q psy12000 122 IYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQE 155 (507)
Q Consensus 122 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 155 (507)
+|+++|+.+|+++.+++++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999963
No 206
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00039 Score=63.33 Aligned_cols=134 Identities=13% Similarity=0.050 Sum_probs=88.7
Q ss_pred cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000 6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD 85 (507)
Q Consensus 6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (507)
.+..+.-|......|++.+|...|..++...|.+.++...++.|+...|+.++|...+...+......+... +
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~-l------ 206 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG-L------ 206 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH-H------
Confidence 334455566788899999999999999999999999999999999999999999999988765333221100 0
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12000 86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP 165 (507)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 165 (507)
.. .+.+..-....++. ..+++.+..+|++.++.+.+|..+...|+.++|.+.+-.+++.+-
T Consensus 207 -------~a--------~i~ll~qaa~~~~~----~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 207 -------QA--------QIELLEQAAATPEI----QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred -------HH--------HHHHHHHHhcCCCH----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 00 00000001111111 223344556777777777777777777777777777666665543
No 207
>KOG2053|consensus
Probab=97.87 E-value=0.04 Score=57.64 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=37.2
Q ss_pred HHHHhhcCHHHHHHHHH-HhhhhcCCCchHHHH-HHHHHHhhCCHHHHHHHHHhhcccCCC
Q psy12000 289 SSFFLLRSFKDVILYLS-SIKSYYTSDDSFNFN-FAQAKCALGQYKEAEEMFLLVQNEGLK 347 (507)
Q Consensus 289 ~~~~~~~~~~~Ai~~~~-~~~~~~~~~~~~~~~-lg~~~~~~g~~~~A~~~~~~~~~~~~~ 347 (507)
.++..+|+|++|.+++. ...+..+..+..+-+ .+..+...++|.+-.+.-.+++..+++
T Consensus 198 ~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 198 LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 45667788888888773 333333333333333 355667778888888888887755543
No 208
>KOG0545|consensus
Probab=97.87 E-value=6.4e-05 Score=65.97 Aligned_cols=95 Identities=18% Similarity=0.180 Sum_probs=81.6
Q ss_pred HHHHHhHhhHHHHHHHHHHHh--------hcCCchhh----------hHHHHHhhccccccchhHHHHHHHHHhcCCCch
Q psy12000 400 ASIHFLRCHYQEAIDIYKRIL--------LDHKDLLA----------LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 461 (507)
Q Consensus 400 ~~~~~~~~~~~~Ai~~~~~~l--------~~~p~~~~----------~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~ 461 (507)
|+-.|..|+|.+|++.|..++ +..|..+. ++.+.+-|+.+.|+|-++++....+|..+|+|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 345566788888888777664 45566543 456788999999999999999999999999999
Q ss_pred hhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000 462 IALNLKACNTYKLFTSRAAENQLKPILVSAGPR 494 (507)
Q Consensus 462 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
.|+..++-.+...++...|+++|+++++.+|.-
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 999999999999999999999999999999975
No 209
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.86 E-value=1e-05 Score=48.75 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=31.2
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhhccHHHHH
Q psy12000 28 IYETLRHLPNPPEDTEFNIASCYFYLGMYLQAN 60 (507)
Q Consensus 28 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~ 60 (507)
+|+++++.+|+++++|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 478999999999999999999999999999996
No 210
>KOG4555|consensus
Probab=97.82 E-value=0.00034 Score=55.27 Aligned_cols=92 Identities=10% Similarity=-0.060 Sum_probs=78.1
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-H---HHHHHhhhhh
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR-I---ALNLKACNTY 179 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~---a~~~~a~~~~ 179 (507)
-..|......|+.+.|++.|.++|...|..+.+|.+.|..+--.|+.++|++-+++++....+-. . ++.-.+.++.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 34577788899999999999999999999999999999999999999999999999998643332 2 4666778888
Q ss_pred hccChHHHHHhhHHHH
Q psy12000 180 KLFTSRAAENQLKPIL 195 (507)
Q Consensus 180 ~~~~~~~A~~~l~~~~ 195 (507)
..|+.+.|...|+...
T Consensus 127 l~g~dd~AR~DFe~AA 142 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAA 142 (175)
T ss_pred HhCchHHHHHhHHHHH
Confidence 8888888888887653
No 211
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.80 E-value=0.039 Score=53.37 Aligned_cols=199 Identities=12% Similarity=0.039 Sum_probs=103.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhh----hhccChHHHHHhhHHHHHhhCCC--CCCChh----HhH
Q psy12000 141 AMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNT----YKLFTSRAAENQLKPILVSILPP--LIDVIP----ESR 210 (507)
Q Consensus 141 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~----~~~~~~~~A~~~l~~~~~~~~~~--~~~~~~----~~~ 210 (507)
-....+.++...|-.++.-+...+|.......+...-. .-.+ -+.--+-++++++ .+.. .-+... .-.
T Consensus 305 Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~-DD~~~Tklr~yL~-lwe~~qs~DiDrqQLvh~L 382 (549)
T PF07079_consen 305 LSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCE-DDESYTKLRDYLN-LWEEIQSYDIDRQQLVHYL 382 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhc-chHHHHHHHHHHH-HHHHHHhhcccHHHHHHHH
Confidence 34456778888888888888888888775433211100 0000 0111111111110 0000 000000 112
Q ss_pred HHHHHHHHhhcc-HHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccC---cHHHHHHHHHHHHHhCCCcccccchhhh--
Q psy12000 211 LNLVIYHLKQEE-HQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTG---SREMVKAAQALFQLVGSSQSECDTVPGR-- 284 (507)
Q Consensus 211 ~~l~~~~~~~~~-~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~-- 284 (507)
..-|.-+.+.|. -++|+++++.+..-.+.+......+.....+.+. +...+..-..+-+.+.+....+-.+.-.
T Consensus 383 ~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ei 462 (549)
T PF07079_consen 383 VFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEI 462 (549)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 234556777887 6778888876644333333333333333332110 0111111111111121111111111111
Q ss_pred -hHH--HHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000 285 -QCM--ASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQ 342 (507)
Q Consensus 285 -~~l--a~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~ 342 (507)
..| |..++.+|+|.++.-+-.-+.+..| .+.++-.+|.+++...+|++|-.++.++.
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 123 4567899999999998888888889 55677779999999999999999999874
No 212
>KOG4555|consensus
Probab=97.77 E-value=0.00063 Score=53.80 Aligned_cols=99 Identities=14% Similarity=-0.011 Sum_probs=80.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCc-cccchHHHHHHhcCChhHHH
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSR-AKTRLSFHLSHKLGDEKSLM 90 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 90 (507)
-|......|+.+.|++.|.+++...|..+.+|.+.++.+..+|+.++|+..++++.+.. ...+.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trt--------------- 113 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRT--------------- 113 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchH---------------
Confidence 37778889999999999999999999999999999999999999999999998875411 11110
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch
Q psy12000 91 EYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL 133 (507)
Q Consensus 91 ~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 133 (507)
. -..+...|.+|..+|+-+.|..-|+.+-+....+
T Consensus 114 a--------cqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 114 A--------CQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred H--------HHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 0 0125678999999999999999999887766543
No 213
>KOG1070|consensus
Probab=97.72 E-value=0.004 Score=67.61 Aligned_cols=228 Identities=11% Similarity=0.066 Sum_probs=148.3
Q ss_pred CCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCC----ChHHHHHHHHHHHHhhhccC----cHHHHHHHHHHHHHhCCC
Q psy12000 203 IDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPS----VPQEYILKAVVQVTIGQDTG----SREMVKAAQALFQLVGSS 274 (507)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~----~~~~~~~~~~~~~~~g~~~~----~~~~~~~A~~~~~~~~~~ 274 (507)
.|...-.|.++...++..++.++|.+..++..+. ..++....-.+++.+-.... ....|+.|-++
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy------- 1526 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY------- 1526 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-------
Confidence 3445556888888888888888888877765332 22222222223333322222 23344444432
Q ss_pred cccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhh
Q psy12000 275 QSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYIS 354 (507)
Q Consensus 275 ~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 354 (507)
++.+..+..|.-+|.+.+++++|.++++...+...+...+|..+|..++++.+-++|...+.+++.--|...+
T Consensus 1527 ---cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH---- 1599 (1710)
T KOG1070|consen 1527 ---CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH---- 1599 (1710)
T ss_pred ---cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh----
Confidence 3344445567888999999999999888877665566667778899999999889999999888654332111
Q ss_pred hhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHH
Q psy12000 355 HLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGA 434 (507)
Q Consensus 355 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la 434 (507)
.+.+... +.+.|..|+-+.+...|+-.+..+|.-.+++.-..
T Consensus 1600 ----------------------------v~~Iskf----------AqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1600 ----------------------------VEFISKF----------AQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred ----------------------------HHHHHHH----------HHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence 1111111 23556678888999999999999998888776666
Q ss_pred hhccccccchhHHHHHHHHHhcC-CCchhhhhHHHhhhhhcCChHHHHH
Q psy12000 435 MCYYKLDYYDVSQEQVAMYLAQK-PTSRIALNLKACNTYKLFTSRAAEN 482 (507)
Q Consensus 435 ~~y~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~ 482 (507)
..-.+.|..+.....|+.++.+. +-.-+-..++=|+-|+-..|+....
T Consensus 1642 d~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred HHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 67778888899999999998763 2222333456777777565554444
No 214
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.70 E-value=3.6e-05 Score=46.52 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=28.4
Q ss_pred hhHHHHHhhccccccchhHHHHHHHHHhcCCCc
Q psy12000 428 ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 460 (507)
Q Consensus 428 ~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~ 460 (507)
.+++.+|.+|+++|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467788999999999999999999999999986
No 215
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.69 E-value=3.6e-05 Score=46.57 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=28.3
Q ss_pred hhHHHHHhhccccccchhHHHHHHHHHhcCCCc
Q psy12000 428 ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 460 (507)
Q Consensus 428 ~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~ 460 (507)
.+++.+|.+|..+|++++|+..|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467788999999999999999999999999975
No 216
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.69 E-value=7.4e-05 Score=45.16 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000 135 ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 166 (507)
Q Consensus 135 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 166 (507)
.+++++|.++..+|++++|+..|+++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35566666666666666666666666666664
No 217
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0037 Score=57.10 Aligned_cols=142 Identities=16% Similarity=0.061 Sum_probs=95.4
Q ss_pred hHHHHHHHHHhhcH-HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12000 87 KSLMEYHQKLEDSL-EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP 165 (507)
Q Consensus 87 ~~~~~~~~~l~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 165 (507)
..+.+...++...+ +..+..+.-....|++.+|...|..++...|++.++...++.|+...|+.+.|...+..+-....
T Consensus 120 sqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 120 SQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 34455555443222 33677788888999999999999999999999999999999999999999999988766432222
Q ss_pred CcHHHHHHHhhh--hhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCC
Q psy12000 166 TSRIALNLKACN--TYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP 235 (507)
Q Consensus 166 ~~~~a~~~~a~~--~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~ 235 (507)
+.. +.-+.+.+ +.+.....+....-.. ...+|.+.++++.++..+...|++++|.+.+-.+.+
T Consensus 200 ~~~-~~~l~a~i~ll~qaa~~~~~~~l~~~------~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 200 DKA-AHGLQAQIELLEQAAATPEIQDLQRR------LAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred hhH-HHHHHHHHHHHHHHhcCCCHHHHHHH------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 221 11122222 1121121111111111 134567788999999999999999999998865533
No 218
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.66 E-value=0.00032 Score=59.15 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhcCCchhhhHHHHHhhcccccc-----------chhHHHHHHHHHhcCCCchhh
Q psy12000 409 YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY-----------YDVSQEQVAMYLAQKPTSRIA 463 (507)
Q Consensus 409 ~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~-----------~~~A~~~~~~~l~~~P~~~~a 463 (507)
+++||.-|++++..+|+..++.+.+|.+|..++. |++|.++|+++.+.+|+|...
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 4555555555555555555555555555554442 455555566666666665554
No 219
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.65 E-value=0.067 Score=56.18 Aligned_cols=302 Identities=12% Similarity=-0.004 Sum_probs=167.2
Q ss_pred ChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhh--------cHHHHHHHHHHH
Q psy12000 39 PEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLED--------SLEEQLCLASIH 110 (507)
Q Consensus 39 ~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~la~~~ 110 (507)
..+.+..-+......|...+|+...-.+.+......++-.....+.+...+......+.. .|.-.+..|...
T Consensus 346 ~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~ 425 (894)
T COG2909 346 LKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLL 425 (894)
T ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHH
Confidence 357788899999999999999999888765333222222222233333333333333322 334467788999
Q ss_pred HHhhcHHHHHHHHHHHHHhCCc---------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH-----HHHHHhh
Q psy12000 111 FLRCHYQEAIDIYKRILLDHKD---------LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI-----ALNLKAC 176 (507)
Q Consensus 111 ~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----a~~~~a~ 176 (507)
..+.++++|..+..++...-|. ..+..-..|.+....|++++|+++.+.++..-|.+.. +....+.
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 9999999999999998776543 1233445678889999999999999999987776543 3334455
Q ss_pred hhhhccChHHHHHhhHHHHHhhCCCCCCChhHhH--HHHHHHHHhhcc--HHHHHHHHHhc----CCCCh-HHHHHHHHH
Q psy12000 177 NTYKLFTSRAAENQLKPILVSILPPLIDVIPESR--LNLVIYHLKQEE--HQEAFDLIKNL----EPSVP-QEYILKAVV 247 (507)
Q Consensus 177 ~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~--~~~A~~~l~~~----~~~~~-~~~~~~~~~ 247 (507)
...-.|++.+|....+...+ .........-+++ ..-+.++..+|+ +.+....+..+ .+..| ..+.+++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 55667888888877665432 1001111112222 334566777883 33322222211 11111 122222222
Q ss_pred HHHhhh--ccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCC-chHHH----H
Q psy12000 248 QVTIGQ--DTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSD-DSFNF----N 320 (507)
Q Consensus 248 ~~~~g~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~-~~~~~----~ 320 (507)
....+. ...+......+.+..... .+...+...+...|+.+.+..|+.++|...++.+.....+. +.+.+ .
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~--~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVY--TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhc--ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 222111 111111111111111110 11111111122368999999999999998887765432211 11111 1
Q ss_pred HH--HHHHhhCCHHHHHHHHHhhcc
Q psy12000 321 FA--QAKCALGQYKEAEEMFLLVQN 343 (507)
Q Consensus 321 lg--~~~~~~g~~~~A~~~~~~~~~ 343 (507)
+. ..-..+|++++|.....+...
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHhccC
Confidence 22 233347999999999887543
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.63 E-value=0.011 Score=55.93 Aligned_cols=224 Identities=17% Similarity=0.106 Sum_probs=140.8
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhh-HHHHHHHHHhhccHHHHHHHHHhCCCCcccc----chHHHHHH
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDT-EFNIASCYFYLGMYLQANQILEKVPPSRAKT----RLSFHLSH 81 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~----~~~~~~~~ 81 (507)
-+.+.-+.+....|+|+.|.+-|+.++. +|..-.+ .-.+-.-...+|..+.|..+.+.+....+.- +..+..-+
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~ 199 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARC 199 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 3455568888899999999999998876 5543211 1112222346799999999887764432221 22333333
Q ss_pred hcCChhHHHHHHH------HHhhcHHH----HHHHHHHH-HHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCH
Q psy12000 82 KLGDEKSLMEYHQ------KLEDSLEE----QLCLASIH-FLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYY 150 (507)
Q Consensus 82 ~~~~~~~~~~~~~------~l~~~~~~----~~~la~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 150 (507)
.-++.+....... .+.+...+ .+.-+... ...-+...|.+.-.++++..|+...+-..-+..+++.|+.
T Consensus 200 ~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~ 279 (531)
T COG3898 200 AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNL 279 (531)
T ss_pred hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccch
Confidence 3444443332221 11111111 12222221 2235678899999999999999999998999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHH
Q psy12000 151 DVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLI 230 (507)
Q Consensus 151 ~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l 230 (507)
.++-.+++.+-+.+|.-..+. +|......+.+..-++.. +.+..+.+.+.+..+.++..-+.-|++..|....
T Consensus 280 rKg~~ilE~aWK~ePHP~ia~-----lY~~ar~gdta~dRlkRa--~~L~slk~nnaes~~~va~aAlda~e~~~ARa~A 352 (531)
T COG3898 280 RKGSKILETAWKAEPHPDIAL-----LYVRARSGDTALDRLKRA--KKLESLKPNNAESSLAVAEAALDAGEFSAARAKA 352 (531)
T ss_pred hhhhhHHHHHHhcCCChHHHH-----HHHHhcCCCcHHHHHHHH--HHHHhcCccchHHHHHHHHHHHhccchHHHHHHH
Confidence 999999999999988766432 222333334444444444 2344566777788888888888888888887665
Q ss_pred HhcCCCCh
Q psy12000 231 KNLEPSVP 238 (507)
Q Consensus 231 ~~~~~~~~ 238 (507)
+......|
T Consensus 353 eaa~r~~p 360 (531)
T COG3898 353 EAAAREAP 360 (531)
T ss_pred HHHhhhCc
Confidence 54433333
No 221
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.62 E-value=0.00013 Score=44.00 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12000 135 ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 167 (507)
Q Consensus 135 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 167 (507)
.+++.+|.+++.+|++++|++.|++++..+|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 345556666666666666666666666666653
No 222
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.55 E-value=0.00012 Score=48.90 Aligned_cols=42 Identities=29% Similarity=0.312 Sum_probs=36.7
Q ss_pred hHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhh
Q psy12000 429 LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN 470 (507)
Q Consensus 429 ~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~ 470 (507)
..+++|..++++|+|++|....+.+|+..|+|..+..++..+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 467899999999999999999999999999999999887766
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.55 E-value=0.0017 Score=65.67 Aligned_cols=121 Identities=17% Similarity=0.104 Sum_probs=95.7
Q ss_pred hhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHh
Q psy12000 18 HLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLE 97 (507)
Q Consensus 18 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 97 (507)
...+.+.|.+.++...+..|+..-..+..|+++...|+.++|++.++++......-+ +..
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~----------------Ql~---- 304 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK----------------QLH---- 304 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH----------------hHH----
Confidence 356788899999999999999998889999999999999999999998764221110 000
Q ss_pred hcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHH-HHHHHHHHhcCCH-------HHHHHHHHHH
Q psy12000 98 DSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALN-VYGAMCYYKLDYY-------DVSQEQVAMY 160 (507)
Q Consensus 98 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-~~la~~~~~~g~~-------~~A~~~~~~~ 160 (507)
.--++.+|..+..+.+|++|..+|.++.+.+..+...| |..|-|+...|+. ++|.+.+.++
T Consensus 305 --~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 305 --HLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred --HHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 00156899999999999999999999999988765554 5577899999998 6666666655
No 224
>KOG2471|consensus
Probab=97.54 E-value=0.016 Score=56.34 Aligned_cols=52 Identities=10% Similarity=-0.022 Sum_probs=44.0
Q ss_pred HHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhC
Q psy12000 15 CHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV 66 (507)
Q Consensus 15 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~ 66 (507)
.+.++.+...+...-..+.-+..+++.+.+..++.++..|++..|.+.+...
T Consensus 215 ~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~s 266 (696)
T KOG2471|consen 215 FLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVS 266 (696)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhc
Confidence 4567777888888888887777888899999999999999999999988654
No 225
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.53 E-value=0.025 Score=55.53 Aligned_cols=156 Identities=15% Similarity=0.116 Sum_probs=101.9
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHhhhhcCC--CchHHHHHHHHHHhhCCHHHHHHHHHhhcccC-CCch-hhhhhhhcc
Q psy12000 283 GRQCMASSFFLLRSFKDVILYLSSIKSYYTS--DDSFNFNFAQAKCALGQYKEAEEMFLLVQNEG-LKND-YVYISHLTK 358 (507)
Q Consensus 283 ~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~-~~~~-~~~~~~l~~ 358 (507)
++..+|.|..+.|+.++|++.++.+.+..|. .-.+.++|..++...+.|.++...+.+--+.. |.++ ..|..
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTa---- 336 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTA---- 336 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHH----
Confidence 4557999999999999999999998876664 34678999999999999999999998864322 1222 22221
Q ss_pred cCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHh---hHHHHHHHHHHHhhcCCchhhhHHHH--
Q psy12000 359 CSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRC---HYQEAIDIYKRILLDHKDLLALNVYG-- 433 (507)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~---~~~~Ai~~~~~~l~~~p~~~~~~~~l-- 433 (507)
|.-.+...++.-. ++ ....+| --..|++.+.++++.+|.-+.....+
T Consensus 337 ----------ALLkaRav~d~fs-----------~e-------~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~ 388 (539)
T PF04184_consen 337 ----------ALLKARAVGDKFS-----------PE-------AASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKS 388 (539)
T ss_pred ----------HHHHHHhhccccC-----------ch-------hhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCC
Confidence 1111111111000 00 001112 12448888999999999988754322
Q ss_pred ----HhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhh
Q psy12000 434 ----AMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNT 471 (507)
Q Consensus 434 ----a~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~ 471 (507)
=..+.+.|+ .||+.+---.++-.-+.+.|++++-|..
T Consensus 389 LilPPehilkrGD-SEAiaYAf~hL~hWk~veGAL~lL~~tw 429 (539)
T PF04184_consen 389 LILPPEHILKRGD-SEAIAYAFFHLQHWKRVEGALNLLHCTW 429 (539)
T ss_pred CCCChHHhcCCCc-HHHHHHHHHHHHHHhcCHhHHHHHHHHh
Confidence 123557776 8888887677777777788888777754
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.52 E-value=0.13 Score=52.34 Aligned_cols=122 Identities=19% Similarity=0.197 Sum_probs=93.4
Q ss_pred hcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHH
Q psy12000 294 LRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLS 373 (507)
Q Consensus 294 ~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (507)
....+.|.++++......|+...+++..|.++...|+.++|++.|++++.... . + .
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~--~--~--------------~------ 301 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQS--E--W--------------K------ 301 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchh--h--H--------------H------
Confidence 45677788899999999999988888899999999999999999998863221 0 0 0
Q ss_pred HHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHH-HHHhhccccccc-------hh
Q psy12000 374 HKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNV-YGAMCYYKLDYY-------DV 445 (507)
Q Consensus 374 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~-~la~~y~~~g~~-------~~ 445 (507)
++.. -....+++.+....+|++|..+|.++.+.+..+..++. ..|.|+..+|+. ++
T Consensus 302 --------------Ql~~--l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~ 365 (468)
T PF10300_consen 302 --------------QLHH--LCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKE 365 (468)
T ss_pred --------------hHHH--HHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHH
Confidence 0000 00133567777889999999999999998888877554 468999999999 77
Q ss_pred HHHHHHHHHh
Q psy12000 446 SQEQVAMYLA 455 (507)
Q Consensus 446 A~~~~~~~l~ 455 (507)
|.+.++++-.
T Consensus 366 a~~l~~~vp~ 375 (468)
T PF10300_consen 366 AEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHH
Confidence 7777776643
No 227
>KOG1914|consensus
Probab=97.46 E-value=0.14 Score=50.77 Aligned_cols=82 Identities=18% Similarity=0.077 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhhcCCchhhhHHHHH-hhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHH
Q psy12000 409 YQEAIDIYKRILLDHKDLLALNVYGA-MCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPI 487 (507)
Q Consensus 409 ~~~Ai~~~~~~l~~~p~~~~~~~~la-~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 487 (507)
.+-|..+|+++.+..-..-.++..-| +=|+-+++..-|..+|+-.++.+||+|...+--..-+..+++...++++|..+
T Consensus 382 lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~ 461 (656)
T KOG1914|consen 382 LKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERV 461 (656)
T ss_pred HHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 67788888888765433323322222 23667999999999999999999999998776666666778899999999999
Q ss_pred HHh
Q psy12000 488 LVS 490 (507)
Q Consensus 488 ~~~ 490 (507)
+..
T Consensus 462 l~s 464 (656)
T KOG1914|consen 462 LTS 464 (656)
T ss_pred Hhc
Confidence 877
No 228
>KOG3364|consensus
Probab=97.45 E-value=0.00051 Score=54.67 Aligned_cols=78 Identities=31% Similarity=0.279 Sum_probs=63.7
Q ss_pred HHHHHHHHHh---HhhHHHHHHHHHHHhh-cCCchh-hhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhh
Q psy12000 396 QLCLASIHFL---RCHYQEAIDIYKRILL-DHKDLL-ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN 470 (507)
Q Consensus 396 ~~~l~~~~~~---~~~~~~Ai~~~~~~l~-~~p~~~-~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~ 470 (507)
+..++|.... ..+.++.|.+++.+++ .+|+.. ...+++|..++++|+|++|+...+..++..|+|.++..++..+
T Consensus 35 ~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~i 114 (149)
T KOG3364|consen 35 QFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETI 114 (149)
T ss_pred HHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 3445554443 2578999999999997 667654 4778899999999999999999999999999999999988887
Q ss_pred hhh
Q psy12000 471 TYK 473 (507)
Q Consensus 471 ~~~ 473 (507)
.-.
T Consensus 115 ed~ 117 (149)
T KOG3364|consen 115 EDK 117 (149)
T ss_pred HHH
Confidence 543
No 229
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.43 E-value=0.00011 Score=43.98 Aligned_cols=32 Identities=34% Similarity=0.442 Sum_probs=28.6
Q ss_pred hHHHHHhhccccccchhHHHHHHHHHhcCCCc
Q psy12000 429 LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 460 (507)
Q Consensus 429 ~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~ 460 (507)
+.+.+|+||.++|++++|++.|+.+++.+|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 46788999999999999999999999999985
No 230
>KOG0545|consensus
Probab=97.42 E-value=0.0029 Score=55.90 Aligned_cols=119 Identities=15% Similarity=0.057 Sum_probs=88.7
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC-ChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHH
Q psy12000 42 TEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG-DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120 (507)
Q Consensus 42 ~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~ 120 (507)
+...-|.-+++.|+|+||...|..++. .+-++-.+-. ....+.+. -+.....+++...++...|+|-+++
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~------~l~~L~lkEkP~e~eW~eL---dk~~tpLllNy~QC~L~~~e~yevl 250 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAII------CLRNLQLKEKPGEPEWLEL---DKMITPLLLNYCQCLLKKEEYYEVL 250 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHH------HHHHHHhccCCCChHHHHH---HHhhhHHHHhHHHHHhhHHHHHHHH
Confidence 455678889999999999998876631 0000000000 01111111 1112334788999999999999999
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 121 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
+...++|..+|++..+++..|.++...=+.++|..-|.+++..+|.-..
T Consensus 251 eh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 251 EHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 9999999999999999999999999999999999999999999997654
No 231
>KOG4642|consensus
Probab=97.41 E-value=0.00023 Score=62.39 Aligned_cols=86 Identities=20% Similarity=0.198 Sum_probs=78.5
Q ss_pred HHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHH
Q psy12000 402 IHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAE 481 (507)
Q Consensus 402 ~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~ 481 (507)
-++...+|..||+.|.+++..+|..+..+.+.++||+++.+++......+.++++.|+...+..++|........+..++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 34445689999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHH
Q psy12000 482 NQLKPI 487 (507)
Q Consensus 482 ~~~~~~ 487 (507)
..+++-
T Consensus 99 ~~Lqra 104 (284)
T KOG4642|consen 99 KVLQRA 104 (284)
T ss_pred HHHHHH
Confidence 877664
No 232
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.38 E-value=0.14 Score=48.82 Aligned_cols=218 Identities=11% Similarity=0.004 Sum_probs=117.9
Q ss_pred hhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCcHH---HHHHHhhhhhhcc-ChH
Q psy12000 113 RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA---QKPTSRI---ALNLKACNTYKLF-TSR 185 (507)
Q Consensus 113 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~p~~~~---a~~~~a~~~~~~~-~~~ 185 (507)
.|..+-|+.+-+.+-..-|.-+.+....-...+..|+|+.|+++.+.... +.|+... +..+-+...-... +..
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 45666666666666666666555555444555566666666666554432 2222221 1111000000000 111
Q ss_pred HHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHH
Q psy12000 186 AAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQ 265 (507)
Q Consensus 186 ~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 265 (507)
.|...-. ....+.|...-+-.--+..+++.|+..++-.+++..=+..|+--+....++...|+ ...+.++.|.
T Consensus 247 ~Ar~~A~-----~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRlkRa~ 319 (531)
T COG3898 247 SARDDAL-----EANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRLKRAK 319 (531)
T ss_pred HHHHHHH-----HHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHHHHHH
Confidence 1111100 01122333333445567788999999999888887633334332333333333343 3345555555
Q ss_pred HHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHh-hCCHHHHHHHHHhhccc
Q psy12000 266 ALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCA-LGQYKEAEEMFLLVQNE 344 (507)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~~~~~ 344 (507)
.+-.. .++........+..-..-|+|..|..--+.+....|.... +..++.+-.. .|+-.++..++-+++..
T Consensus 320 ~L~sl------k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~-~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 320 KLESL------KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESA-YLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHhc------CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhH-HHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 43321 2233444555678888889999998877777777777654 4457776665 49999999999888743
No 233
>KOG0551|consensus
Probab=97.38 E-value=0.004 Score=57.52 Aligned_cols=91 Identities=20% Similarity=0.066 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc----hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKD----LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNT 178 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~ 178 (507)
+-.-|+-|++.++|..|+..|.+.|..... +...|.+.|-|.+-+|+|..|+.-+.++++.+|++..++..-|.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 556899999999999999999999998644 3456788999999999999999999999999999999999888888
Q ss_pred hhccChHHHHHhhHH
Q psy12000 179 YKLFTSRAAENQLKP 193 (507)
Q Consensus 179 ~~~~~~~~A~~~l~~ 193 (507)
+.+..+..|..+.+.
T Consensus 164 ~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 164 LELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHhh
Confidence 888888888766654
No 234
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.37 E-value=0.00032 Score=41.85 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000 136 LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 166 (507)
Q Consensus 136 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 166 (507)
+++.+|.|+.++|++++|++.|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566666666666666666666666666665
No 235
>KOG1586|consensus
Probab=97.33 E-value=0.095 Score=46.34 Aligned_cols=66 Identities=14% Similarity=0.029 Sum_probs=44.5
Q ss_pred HHHHHHHHHHh-hcHHHHHHHHHHHHHhCCch------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 103 QLCLASIHFLR-CHYQEAIDIYKRILLDHKDL------LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 103 ~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
+..+|.+|..- .++++||.+|+++-+..... ...+.-.|..-..+++|.+|+.+|+++....-++.
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 45677777764 78888888888887665421 12334455555678888888888888776544444
No 236
>KOG0376|consensus
Probab=97.33 E-value=0.00023 Score=68.87 Aligned_cols=94 Identities=13% Similarity=0.064 Sum_probs=87.5
Q ss_pred HHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHH
Q psy12000 403 HFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAEN 482 (507)
Q Consensus 403 ~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~ 482 (507)
.+..++|+.|++.|.++++.+|+...+..+.+.++.+.+++-.|+.....+++.+|....++..+|...+.+..++.|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 34457899999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcc
Q psy12000 483 QLKPILVSAGPRVR 496 (507)
Q Consensus 483 ~~~~~~~~~~~~~~ 496 (507)
+|+......|.+..
T Consensus 94 ~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 94 DLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHhhhcCcCcHH
Confidence 99999999998754
No 237
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.23 E-value=0.0011 Score=44.17 Aligned_cols=43 Identities=28% Similarity=0.303 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhh
Q psy12000 135 ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN 177 (507)
Q Consensus 135 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~ 177 (507)
+..+.+|..++++|+|++|.++.+.+++.+|++..+..++..+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4567899999999999999999999999999999887665444
No 238
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.21 E-value=0.007 Score=59.25 Aligned_cols=150 Identities=14% Similarity=0.073 Sum_probs=99.5
Q ss_pred HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHH
Q psy12000 13 GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEY 92 (507)
Q Consensus 13 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (507)
-...-+..+.++-++.-.++|+++|+-+++|..+|.-. ..-..+|+++++++.+..... +.........+...+.
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~---lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEAS---LGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHh---hchhhhhhcccchhhh
Confidence 34445678889999999999999999999998888621 233566666666653211100 0000000000000000
Q ss_pred HHHHhhc----HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc--hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CC
Q psy12000 93 HQKLEDS----LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD--LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ-KP 165 (507)
Q Consensus 93 ~~~l~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p 165 (507)
..... +-....+|.+..+.|+.++|++.|+++++.+|. +..++.+|..+++.++.|.++..++.+.-+. -|
T Consensus 250 --~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 250 --WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred --hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 00000 112457999999999999999999999998874 6789999999999999999999999998543 25
Q ss_pred CcHH
Q psy12000 166 TSRI 169 (507)
Q Consensus 166 ~~~~ 169 (507)
.+..
T Consensus 328 kSAt 331 (539)
T PF04184_consen 328 KSAT 331 (539)
T ss_pred chHH
Confidence 5554
No 239
>KOG0376|consensus
Probab=97.20 E-value=0.00047 Score=66.84 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=82.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccCh
Q psy12000 105 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTS 184 (507)
Q Consensus 105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~ 184 (507)
..|...+.-++|+.|+..|.++|..+|++...+-+.+.++++.+++..|+.-+.++++.+|....++..+|...+.++.+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 34566778899999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred HHHHHhhHHH
Q psy12000 185 RAAENQLKPI 194 (507)
Q Consensus 185 ~~A~~~l~~~ 194 (507)
.+|...|+..
T Consensus 89 ~~A~~~l~~~ 98 (476)
T KOG0376|consen 89 KKALLDLEKV 98 (476)
T ss_pred HHHHHHHHHh
Confidence 9999888765
No 240
>KOG1585|consensus
Probab=97.20 E-value=0.0078 Score=53.29 Aligned_cols=102 Identities=17% Similarity=0.045 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHH
Q psy12000 41 DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120 (507)
Q Consensus 41 ~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~ 120 (507)
..+..-+.++...++|++|..++.++.+-..+++.+|+.+..+ -.-|.+......+.|+.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKay--------------------EqaamLake~~klsEvv 91 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAY--------------------EQAAMLAKELSKLSEVV 91 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHH--------------------HHHHHHHHHHHHhHHHH
Confidence 4566778888889999999999998876555566777776544 12344445566677777
Q ss_pred HHHHHHHHhC-----CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 121 DIYKRILLDH-----KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 121 ~~~~~~l~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
.+|+++.... |+....-...|--.....++++|+.+|++.+.
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqrala 138 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALA 138 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 7777765443 33333333333334455666777777776654
No 241
>KOG1586|consensus
Probab=97.19 E-value=0.016 Score=51.06 Aligned_cols=162 Identities=15% Similarity=0.081 Sum_probs=102.2
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCC----CC--ChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-------
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLP----NP--PEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT------- 73 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~----p~--~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~------- 73 (507)
++....|+.|-...++..|-..|-++-+.. .. -...|.-.+.|| +.++.++|+.+++++++.....
T Consensus 35 dl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aA 113 (288)
T KOG1586|consen 35 ELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAA 113 (288)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 455667888888888888888888875532 11 224455566665 5559999999988775411110
Q ss_pred chHHHHHHhcCCh-hHHH---HHHHHHhh--------cHHH--HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh-----
Q psy12000 74 RLSFHLSHKLGDE-KSLM---EYHQKLED--------SLEE--QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL----- 134 (507)
Q Consensus 74 ~~~~~~~~~~~~~-~~~~---~~~~~l~~--------~~~~--~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----- 134 (507)
.....++..+..+ .... .+.+.-.+ ...+ ++..|..-...|+|.+||.+|+++....-++.
T Consensus 114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys 193 (288)
T KOG1586|consen 114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYS 193 (288)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhH
Confidence 0112222222111 1111 11111110 1111 55677777889999999999999987765543
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 135 --ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 135 --~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
+..+..|.|++-..+.-.+...+++....+|....
T Consensus 194 ~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 194 AKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 34456789999989988899999999999998764
No 242
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.15 E-value=0.0056 Score=52.39 Aligned_cols=121 Identities=10% Similarity=0.036 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCCCCChh---hHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcH
Q psy12000 24 QALGIYETLRHLPNPPED---TEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSL 100 (507)
Q Consensus 24 ~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (507)
+.+...++....+|.+.- .-..+|..+...|++++|+.-++.+...+....+. .+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk-~l--------------------- 127 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLK-AL--------------------- 127 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHH-HH---------------------
Confidence 455555555555555442 23456667777777777777766554322221000 00
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
.-+.||.+...+|.+|+|+..+..+-.. ...+...-..|.++...|+-++|+..|++++..+++..
T Consensus 128 -~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 128 -AALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred -HHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 0235666777777777777666553221 12233444567777777777777777777776654443
No 243
>KOG2300|consensus
Probab=97.15 E-value=0.29 Score=47.95 Aligned_cols=117 Identities=17% Similarity=0.136 Sum_probs=70.8
Q ss_pred chhhHHHHHHHhhc--CHHHHHHHHHHHhcCCCCCh-h--hHHHHHHH-HHhhccHHHHHHHHHhCCC---Ccccc-c--
Q psy12000 7 LTDAWLGYCHFHLG--QYKQALGIYETLRHLPNPPE-D--TEFNIASC-YFYLGMYLQANQILEKVPP---SRAKT-R-- 74 (507)
Q Consensus 7 ~~~~~lg~~~~~~g--~~~~A~~~~~~~l~~~p~~~-~--~~~~la~~-~~~~g~~~eA~~~~~~~~~---~~~~~-~-- 74 (507)
...+.+|..+...| +..++|++++..+.-.|... + ....+|.+ +...++++-|...++++-. .-+.. +
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 34556788888888 89999999999988877643 3 34556665 4557899999998887621 11111 1
Q ss_pred -----hHHHHHHhcC-ChhHHH-HHHHHHh---hcH----HHHHHHHHHHHHhhcHHHHHHHH
Q psy12000 75 -----LSFHLSHKLG-DEKSLM-EYHQKLE---DSL----EEQLCLASIHFLRCHYQEAIDIY 123 (507)
Q Consensus 75 -----~~~~~~~~~~-~~~~~~-~~~~~l~---~~~----~~~~~la~~~~~~g~~~~A~~~~ 123 (507)
++.++...+. ....+. .....+. ..| .-.+.|+.++....++..|++.+
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 2223333222 111111 1111121 222 12678999999999999999873
No 244
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.12 E-value=0.00037 Score=42.01 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=28.1
Q ss_pred hhHHHHHhhccccccchhHHHHHHHHHhcCCCc
Q psy12000 428 ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 460 (507)
Q Consensus 428 ~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~ 460 (507)
.+++.+|.+|.++|++++|++.|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 356778999999999999999999999999864
No 245
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.07 E-value=0.00092 Score=40.21 Aligned_cols=32 Identities=19% Similarity=0.145 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000 135 ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 166 (507)
Q Consensus 135 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 166 (507)
.+++.+|.+|..+|++++|++.|+++++.+|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34566666666666666666666666666663
No 246
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.06 E-value=0.28 Score=46.18 Aligned_cols=128 Identities=17% Similarity=0.111 Sum_probs=83.5
Q ss_pred HhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHh
Q psy12000 51 FYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRC-HYQEAIDIYKRILLD 129 (507)
Q Consensus 51 ~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~ 129 (507)
..+|+++-|..++.|+....... .+..... ...-.++.|......+ ++++|+..++++.+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~-----------~~~~~~~-------La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSL-----------DPDMAEE-------LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcC-----------CcHHHHH-------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 46788888888888775311000 0000000 0112678888888889 999999999998877
Q ss_pred ----CC------ch----hHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhH
Q psy12000 130 ----HK------DL----LALNVYGAMCYYKLDYYD---VSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLK 192 (507)
Q Consensus 130 ----~p------~~----~~~~~~la~~~~~~g~~~---~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~ 192 (507)
.+ +. ..++..++.+|...+.++ +|.+.++.+....|+.+..+.+.-.+..+.++.+.+...+.
T Consensus 66 l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~ 145 (278)
T PF08631_consen 66 LEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILM 145 (278)
T ss_pred HHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHH
Confidence 21 11 246677899999877654 56666666777788877765555445455677788888777
Q ss_pred HHHH
Q psy12000 193 PILV 196 (507)
Q Consensus 193 ~~~~ 196 (507)
.++.
T Consensus 146 ~mi~ 149 (278)
T PF08631_consen 146 RMIR 149 (278)
T ss_pred HHHH
Confidence 7653
No 247
>KOG2610|consensus
Probab=97.06 E-value=0.08 Score=49.28 Aligned_cols=97 Identities=8% Similarity=-0.080 Sum_probs=59.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhh
Q psy12000 141 AMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQ 220 (507)
Q Consensus 141 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (507)
+-+....|+..+|-...+++++..|.+..++...-..++..|+...-...+++++. .+....|....+.-.++..+...
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip-~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP-KWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc-ccCCCCcHHHHHHHHHHhhHHHh
Confidence 44555667777777777777777777777666555556666665555555554321 11112233344455566777788
Q ss_pred ccHHHHHHHHHhcCCCCh
Q psy12000 221 EEHQEAFDLIKNLEPSVP 238 (507)
Q Consensus 221 ~~~~~A~~~l~~~~~~~~ 238 (507)
|-|++|.+..++....++
T Consensus 189 g~y~dAEk~A~ralqiN~ 206 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINR 206 (491)
T ss_pred ccchhHHHHHHhhccCCC
Confidence 888888887776544444
No 248
>KOG2610|consensus
Probab=97.01 E-value=0.01 Score=54.93 Aligned_cols=146 Identities=14% Similarity=0.110 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHhhcHHHHHH---HHHHHHHhhcHHHHHHHHHHHHHh-CCchh---HHHHHHHHHHHhcCCHHHHHHHHH
Q psy12000 86 EKSLMEYHQKLEDSLEEQLC---LASIHFLRCHYQEAIDIYKRILLD-HKDLL---ALNVYGAMCYYKLDYYDVSQEQVA 158 (507)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~---la~~~~~~g~~~~A~~~~~~~l~~-~p~~~---~~~~~la~~~~~~g~~~~A~~~~~ 158 (507)
.++..+..+.|.+.|.+.+. .-.+++-.|+.+.-...+++++.. +|+.| -+.-..+.+....|-|++|.+..+
T Consensus 120 h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ 199 (491)
T KOG2610|consen 120 HEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQAD 199 (491)
T ss_pred cHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHH
Confidence 45556667778888888554 345778899999999999999988 77764 445567788999999999999999
Q ss_pred HHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000 159 MYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN 232 (507)
Q Consensus 159 ~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~ 232 (507)
+++++||.+.-+...++.++-..++++++.+...+-.. .+....-...-.|...+..++..++|+.|++++..
T Consensus 200 ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted-~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 200 RALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTED-DWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhccc-chhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 99999999999888888888888888888765543210 00000000122456678889999999999998863
No 249
>KOG1585|consensus
Probab=96.85 E-value=0.21 Score=44.53 Aligned_cols=165 Identities=10% Similarity=-0.034 Sum_probs=96.4
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHH
Q psy12000 8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPE------DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSH 81 (507)
Q Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~ 81 (507)
++...+.+|-...+|++|..++.++.+-..++. .++-..|.+.-....+.|+..+++++.. ++.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~----------lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE----------LYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----------HHH
Confidence 444567888889999999999999986544443 2233455556667777888887777632 111
Q ss_pred hcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc------hhHHHHHHHHHHHhcCCHHHHHH
Q psy12000 82 KLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD------LLALNVYGAMCYYKLDYYDVSQE 155 (507)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~ 155 (507)
.-|..+.+..+. ..|.-.....++++|+++|++++..-.. -.+.+...+.++.+..++++|-.
T Consensus 103 E~GspdtAAmal-----------eKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 103 ECGSPDTAAMAL-----------EKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred HhCCcchHHHHH-----------HHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 122222222221 1222334557888999999988765421 13455567788889999998877
Q ss_pred HHHHHH----hcC--CCcHHHHHHHhhhhhhccChHHHHHhhHH
Q psy12000 156 QVAMYL----AQK--PTSRIALNLKACNTYKLFTSRAAENQLKP 193 (507)
Q Consensus 156 ~~~~~l----~~~--p~~~~a~~~~a~~~~~~~~~~~A~~~l~~ 193 (507)
.+.+-. +.+ |+-..++.....+++...++..|+..+..
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 766532 122 22111222222233344467777766654
No 250
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.78 E-value=0.037 Score=46.42 Aligned_cols=59 Identities=14% Similarity=-0.054 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL 161 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 161 (507)
...++..+...|++++|+..+++++..+|.+..++..+-.++..+|+..+|++.|+++.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999874
No 251
>KOG2471|consensus
Probab=96.78 E-value=0.0028 Score=61.42 Aligned_cols=136 Identities=13% Similarity=0.055 Sum_probs=95.2
Q ss_pred ccchhhHHHHHHHhhcCHHHHHHHHHHH-hcCCCC--------ChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccch
Q psy12000 5 DSLTDAWLGYCHFHLGQYKQALGIYETL-RHLPNP--------PEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRL 75 (507)
Q Consensus 5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~-l~~~p~--------~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~ 75 (507)
++...+.-+..+|..|+|.+|.+.+... +...|. ..-.|.++|.+++++|.|.-+..+|.++..+..
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c---- 314 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC---- 314 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH----
Confidence 3445566789999999999999988654 222333 224678999999999999999999998853100
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC
Q psy12000 76 SFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD 148 (507)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 148 (507)
-.+...+ ......+. .-.+.-+..++.|..|...|+.-.|.++|.++......+|.+|..+|.|.+...
T Consensus 315 -~qL~~g~-~~~~~~tl--s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 315 -SQLRNGL-KPAKTFTL--SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred -HHHhccC-CCCcceeh--hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 0000000 00000000 000112337899999999999999999999999999999999999999988654
No 252
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.72 E-value=0.014 Score=44.19 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12000 119 AIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 167 (507)
Q Consensus 119 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 167 (507)
.+..+++.+..+|++.++.+.+|..++..|++++|++.+-.+++.+|+.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4567788999999999999999999999999999999999999998876
No 253
>PRK10941 hypothetical protein; Provisional
Probab=96.69 E-value=0.0062 Score=56.37 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=65.6
Q ss_pred HHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhh
Q psy12000 399 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN 470 (507)
Q Consensus 399 l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~ 470 (507)
+..++...++++.|+.+.+.++...|+++.-.-..|.+|.++|.+..|...++.+++.-|++|.+..++..+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 446777889999999999999999999999888899999999999999999999999999999997766654
No 254
>KOG0985|consensus
Probab=96.67 E-value=1.2 Score=47.76 Aligned_cols=345 Identities=15% Similarity=0.136 Sum_probs=168.3
Q ss_pred ChhhHHHHHHHHHhhccHHHHHHHHHhCC-C-Cccc-cc----hHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHH
Q psy12000 39 PEDTEFNIASCYFYLGMYLQANQILEKVP-P-SRAK-TR----LSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHF 111 (507)
Q Consensus 39 ~~~~~~~la~~~~~~g~~~eA~~~~~~~~-~-~~~~-~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~ 111 (507)
+|+.-.-....++..+-..+-++.++++. + +... ++ +++.-+.+. +..+..+|..+|.... --..|.+-.
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD--a~~ia~iai 1059 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD--APDIAEIAI 1059 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC--chhHHHHHh
Confidence 44545556667888888999999999874 2 2111 11 233333333 5666777777775321 113455666
Q ss_pred HhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhh
Q psy12000 112 LRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQL 191 (507)
Q Consensus 112 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l 191 (507)
..+-|++|..+|++. +-+ ..+. -.+--..+..|.|.++.+++ +.+..|..+|..-++.|...+|++.+
T Consensus 1060 ~~~LyEEAF~ifkkf---~~n-~~A~---~VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKF---DMN-VSAI---QVLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred hhhHHHHHHHHHHHh---ccc-HHHH---HHHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHH
Confidence 667778887777762 111 1111 01112334455555544443 22223333344444555555555433
Q ss_pred HHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHH--HHHHHHHHhhhccCcHHHHHHHHHHHH
Q psy12000 192 KPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYI--LKAVVQVTIGQDTGSREMVKAAQALFQ 269 (507)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~A~~~~~ 269 (507)
-+ ...|..+.....+-.+.|+|++-+..+....++....++ ..-.++...++. .+-+++..
T Consensus 1128 ik----------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl-------~elE~fi~ 1190 (1666)
T KOG0985|consen 1128 IK----------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRL-------TELEEFIA 1190 (1666)
T ss_pred Hh----------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchH-------HHHHHHhc
Confidence 22 223455666677777778888777766533111110111 111122233222 22222211
Q ss_pred HhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCch
Q psy12000 270 LVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKND 349 (507)
Q Consensus 270 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~ 349 (507)
+.+ . .. ....|.-.+..|.|+.|--+|..+.. +..|+..+..+|+|..|...-+++-+..
T Consensus 1191 --gpN--~-A~---i~~vGdrcf~~~~y~aAkl~y~~vSN--------~a~La~TLV~LgeyQ~AVD~aRKAns~k---- 1250 (1666)
T KOG0985|consen 1191 --GPN--V-AN---IQQVGDRCFEEKMYEAAKLLYSNVSN--------FAKLASTLVYLGEYQGAVDAARKANSTK---- 1250 (1666)
T ss_pred --CCC--c-hh---HHHHhHHHhhhhhhHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHHhhhccchh----
Confidence 100 0 01 12356667777788877666655421 3457888888888888888777763221
Q ss_pred hhhhhhhcccC--ccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchh
Q psy12000 350 YVYISHLTKCS--PSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL 427 (507)
Q Consensus 350 ~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~ 427 (507)
+|.. -|+ ...+.++.| +--|-.- .+. .+.--.+...|..+|.|++-|..++.++-...-..
T Consensus 1251 -tWK~---VcfaCvd~~EFrlA----QiCGL~i-------ivh--adeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM 1313 (1666)
T KOG0985|consen 1251 -TWKE---VCFACVDKEEFRLA----QICGLNI-------IVH--ADELEELIEYYQDRGYFEELISLLEAGLGLERAHM 1313 (1666)
T ss_pred -HHHH---HHHHHhchhhhhHH----HhcCceE-------EEe--hHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH
Confidence 1111 011 111122211 1100000 000 00001111233345788888888888877666666
Q ss_pred hhHHHHHhhccccccchhHHHHHHHH
Q psy12000 428 ALNVYGAMCYYKLDYYDVSQEQVAMY 453 (507)
Q Consensus 428 ~~~~~la~~y~~~g~~~~A~~~~~~~ 453 (507)
.....+|..|.|- ++++-.+.++-+
T Consensus 1314 gmfTELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1314 GMFTELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 6666677666554 355555555443
No 255
>KOG0551|consensus
Probab=96.65 E-value=0.017 Score=53.52 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=83.8
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHhCCCCccccc-hHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHH
Q psy12000 42 TEFNIASCYFYLGMYLQANQILEKVPPSRAKTR-LSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120 (507)
Q Consensus 42 ~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~ 120 (507)
-+---|.-|++.++|..|+..|.+.+....... +.. -.+.+.|.+.+..|+|..|+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlna-----------------------vLY~NRAAa~~~l~NyRs~l 139 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNA-----------------------VLYTNRAAAQLYLGNYRSAL 139 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHH-----------------------HHHhhHHHHHHHHHHHHHHH
Confidence 344578889999999999999877643211110 000 01557788888999999999
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12000 121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL 171 (507)
Q Consensus 121 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~ 171 (507)
.-..+++..+|.+..+++.-|.|++.+.+++.|+..++..+..+-....+.
T Consensus 140 ~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~ 190 (390)
T KOG0551|consen 140 NDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAI 190 (390)
T ss_pred HHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 999999999999999999999999999999999999999877766555443
No 256
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.65 E-value=0.57 Score=45.72 Aligned_cols=142 Identities=15% Similarity=-0.037 Sum_probs=82.9
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHhhhhcC----CCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCc------hhhh
Q psy12000 283 GRQCMASSFFLLRSFKDVILYLSSIKSYYT----SDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKN------DYVY 352 (507)
Q Consensus 283 ~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~ 352 (507)
.+..++.+..+.|+++-|...+..+....+ ..+.+.+..+..+...|+..+|+..++..++..... ....
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~ 227 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAEL 227 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence 345678889999999999999988876542 145667778999999999999999998876521110 0001
Q ss_pred hhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHH------hHhhHHHHHHHHHHHhhcCCch
Q psy12000 353 ISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHF------LRCHYQEAIDIYKRILLDHKDL 426 (507)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~------~~~~~~~Ai~~~~~~l~~~p~~ 426 (507)
..++...... ........... ...++ ..+.+|.... ..+.+++++..|+++.+.+|..
T Consensus 228 ~~~~~~~~~~----------~~~~~~~~~~~---~~~a~---~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 228 KSGLLESLEV----------ISSTNLDKESK---ELKAK---AFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred hhcccccccc----------ccccchhhhhH---HHHHH---HHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence 0000000000 00000000000 00000 0111121111 2267899999999999999999
Q ss_pred hhhHHHHHhhcccc
Q psy12000 427 LALNVYGAMCYYKL 440 (507)
Q Consensus 427 ~~~~~~la~~y~~~ 440 (507)
...++..|..+.++
T Consensus 292 ~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 292 EKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777766654
No 257
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.59 E-value=0.036 Score=47.62 Aligned_cols=91 Identities=14% Similarity=0.016 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCch---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDL---LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY 179 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~ 179 (507)
.+.+|..+...|++++|+..++.++....|. .-+..+||.+.+.+|++|+|+..++......-.. ...-++|.++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~-~~~elrGDill 170 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA-IVAELRGDILL 170 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH-HHHHHhhhHHH
Confidence 5678999999999999999999999665543 3456789999999999999999887654322111 12334555555
Q ss_pred hccChHHHHHhhHHH
Q psy12000 180 KLFTSRAAENQLKPI 194 (507)
Q Consensus 180 ~~~~~~~A~~~l~~~ 194 (507)
..|+.++|...+++.
T Consensus 171 ~kg~k~~Ar~ay~kA 185 (207)
T COG2976 171 AKGDKQEARAAYEKA 185 (207)
T ss_pred HcCchHHHHHHHHHH
Confidence 555555555555443
No 258
>KOG1308|consensus
Probab=96.58 E-value=0.0017 Score=60.30 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=75.9
Q ss_pred HHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHH
Q psy12000 403 HFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAEN 482 (507)
Q Consensus 403 ~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~ 482 (507)
.+..|.+++||+.|.++++.+|....++...|.++.++++...|+..+..+++++||.+..+.+++..+=.+.+...+..
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34458999999999999999999999999999999999999999999999999999999999988888777777666666
Q ss_pred HHHHHHH
Q psy12000 483 QLKPILV 489 (507)
Q Consensus 483 ~~~~~~~ 489 (507)
+|....+
T Consensus 204 dl~~a~k 210 (377)
T KOG1308|consen 204 DLALACK 210 (377)
T ss_pred HHHHHHh
Confidence 5555443
No 259
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.55 E-value=0.042 Score=46.09 Aligned_cols=89 Identities=17% Similarity=0.007 Sum_probs=62.9
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCC-----c-----------------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000 106 LASIHFLRCHYQEAIDIYKRILLDHK-----D-----------------LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ 163 (507)
Q Consensus 106 la~~~~~~g~~~~A~~~~~~~l~~~p-----~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 163 (507)
.|......|+.+.++..+++++.... + ...+...++..+...|++++|+..+++++..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 45555667788889999999887652 1 1134556778888999999999999999999
Q ss_pred CCCcHHHHHHHhhhhhhccChHHHHHhhHHH
Q psy12000 164 KPTSRIALNLKACNTYKLFTSRAAENQLKPI 194 (507)
Q Consensus 164 ~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~ 194 (507)
+|.+..++..+-.++...|+...|...+..+
T Consensus 92 dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 92 DPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 9999887776666666777777776666554
No 260
>KOG3364|consensus
Probab=96.52 E-value=0.016 Score=46.33 Aligned_cols=75 Identities=31% Similarity=0.289 Sum_probs=61.9
Q ss_pred HHHHHHHHHH---hhcHHHHHHHHHHHHH-hCCc-hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhh
Q psy12000 103 QLCLASIHFL---RCHYQEAIDIYKRILL-DHKD-LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN 177 (507)
Q Consensus 103 ~~~la~~~~~---~g~~~~A~~~~~~~l~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~ 177 (507)
.+++|..+.. ..+..+-+.+++.+++ ..|+ ..+..|.||..+++.|+|++|+.+++.++...|++..+..++-.+
T Consensus 35 ~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~i 114 (149)
T KOG3364|consen 35 QFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETI 114 (149)
T ss_pred HHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 6778877765 4566789999999997 5554 457788999999999999999999999999999999887655443
No 261
>KOG4507|consensus
Probab=96.48 E-value=0.28 Score=49.23 Aligned_cols=59 Identities=12% Similarity=-0.056 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhh
Q psy12000 407 CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN 465 (507)
Q Consensus 407 ~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 465 (507)
|-.-+|-..+.+++......|-.++-+|..|.-+.+.++|++.+++++++.|+++.+-+
T Consensus 656 ~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~ 714 (886)
T KOG4507|consen 656 GLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECEN 714 (886)
T ss_pred hhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHH
Confidence 44566777777777766555666677788888888888888888888888888877644
No 262
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.40 E-value=0.037 Score=46.27 Aligned_cols=82 Identities=12% Similarity=0.061 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
++.+..+-...++.+++..++..+--..|..+++-..-|.+++..|+|.+|+.+|+.+....|..+.+.-+++++++.++
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 44555666677899999999999999999999999999999999999999999999999999999988888888887776
Q ss_pred Ch
Q psy12000 183 TS 184 (507)
Q Consensus 183 ~~ 184 (507)
+.
T Consensus 93 D~ 94 (160)
T PF09613_consen 93 DP 94 (160)
T ss_pred Ch
Confidence 64
No 263
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.38 E-value=0.0057 Score=37.29 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHH
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRIL 127 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l 127 (507)
..||.+|..+|+|++|+++|++++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555555555555555533
No 264
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.37 E-value=0.0059 Score=37.22 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH--hcCCCc
Q psy12000 136 LNVYGAMCYYKLDYYDVSQEQVAMYL--AQKPTS 167 (507)
Q Consensus 136 ~~~~la~~~~~~g~~~~A~~~~~~~l--~~~p~~ 167 (507)
++.+||.+|..+|+|++|+++|++++ ..+|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 03579999999999999999999955 445543
No 265
>PRK10941 hypothetical protein; Provisional
Probab=96.24 E-value=0.033 Score=51.56 Aligned_cols=74 Identities=15% Similarity=0.091 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC 176 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~ 176 (507)
.-++-.+|...++++.|+.+.+.++...|+++.-+.-.|.+|.++|.+..|..-++.++..-|+++.+..++..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 34677899999999999999999999999999988899999999999999999999999999999987665443
No 266
>KOG1308|consensus
Probab=96.19 E-value=0.0018 Score=60.02 Aligned_cols=90 Identities=16% Similarity=0.145 Sum_probs=77.8
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccCh
Q psy12000 105 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTS 184 (507)
Q Consensus 105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~ 184 (507)
.-+.-.+..|.+++|++.|..+|..+|....++...+.++++++++..|+.-+..++.++|+....+.+.+..+..+|++
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 34455667899999999999999999999999999999999999999999999999999999998887777777777777
Q ss_pred HHHHHhhHHH
Q psy12000 185 RAAENQLKPI 194 (507)
Q Consensus 185 ~~A~~~l~~~ 194 (507)
..|...+...
T Consensus 199 e~aa~dl~~a 208 (377)
T KOG1308|consen 199 EEAAHDLALA 208 (377)
T ss_pred HHHHHHHHHH
Confidence 7776555443
No 267
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.15 E-value=0.16 Score=47.94 Aligned_cols=122 Identities=11% Similarity=-0.033 Sum_probs=75.6
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccC
Q psy12000 105 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK-LDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT 183 (507)
Q Consensus 105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~ 183 (507)
.+.......+..+.|..+|.++....+-...+|...|.+-+. .++.+.|.++|+..++..|.+...+......+...++
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d 85 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLND 85 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCc
Confidence 344555566668888888888886666677888888888666 5566668999998888888888766655556666777
Q ss_pred hHHHHHhhHHHHHhhCCCCCCCh--hHhHHHHHHHHHhhccHHHHHHHH
Q psy12000 184 SRAAENQLKPILVSILPPLIDVI--PESRLNLVIYHLKQEEHQEAFDLI 230 (507)
Q Consensus 184 ~~~A~~~l~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~l 230 (507)
.+.|...|+..+ ..+.... ...|......=.+.|+.+....+.
T Consensus 86 ~~~aR~lfer~i----~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~ 130 (280)
T PF05843_consen 86 INNARALFERAI----SSLPKEKQSKKIWKKFIEFESKYGDLESVRKVE 130 (280)
T ss_dssp HHHHHHHHHHHC----CTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHHHHHHHHHH----HhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777653 2222211 123444444444455555554444
No 268
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.12 E-value=2.4 Score=45.00 Aligned_cols=54 Identities=9% Similarity=0.054 Sum_probs=42.5
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhhhhc---CC------CchHHHHHHHHHHhhCCHHHHHHHHH
Q psy12000 286 CMASSFFLLRSFKDVILYLSSIKSYY---TS------DDSFNFNFAQAKCALGQYKEAEEMFL 339 (507)
Q Consensus 286 ~la~~~~~~~~~~~Ai~~~~~~~~~~---~~------~~~~~~~lg~~~~~~g~~~~A~~~~~ 339 (507)
.++.+.+-.+++.+|...++.+.... |. .+..++..|..+-..|+.+.|+..|.
T Consensus 366 y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 366 YQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 46788888999999998887665432 22 24566778888888999999999998
No 269
>KOG1550|consensus
Probab=96.07 E-value=2.1 Score=44.67 Aligned_cols=288 Identities=13% Similarity=0.108 Sum_probs=160.0
Q ss_pred cHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHH
Q psy12000 115 HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKL-----DYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAEN 189 (507)
Q Consensus 115 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~ 189 (507)
+...|..+|+.+-.. .+..+.+.+|.||..- .+.++|+.+|+.+... ++.+..
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~--------------------~~~~a~ 284 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAES--------------------FKKAAT 284 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH--------------------HHHHHh
Confidence 456788888876544 3566677788888753 5788888888877543 000000
Q ss_pred hhHHHHHhhCCCCCCChhHhHHHHHHHHHhh----c-cHHHHHHHHHhc-CCCChHHHHHHHHHHHHhhhccCcHHHHHH
Q psy12000 190 QLKPILVSILPPLIDVIPESRLNLVIYHLKQ----E-EHQEAFDLIKNL-EPSVPQEYILKAVVQVTIGQDTGSREMVKA 263 (507)
Q Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~-~~~~A~~~l~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 263 (507)
+ ..+.+...+|.+|.+- . ++..|...+.+. .-.+|......|..+..-. ...++++
T Consensus 285 -------~-------~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~----~~~d~~~ 346 (552)
T KOG1550|consen 285 -------K-------GLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGT----KERDYRR 346 (552)
T ss_pred -------h-------cCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC----ccccHHH
Confidence 0 0223455666666652 2 677787777654 4455655555555544322 2345678
Q ss_pred HHHHHHHhCCCcccccchhhhhHHHHHHHh----hcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhh-CCHHHHHHHH
Q psy12000 264 AQALFQLVGSSQSECDTVPGRQCMASSFFL----LRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCAL-GQYKEAEEMF 338 (507)
Q Consensus 264 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~ 338 (507)
|.++|...... ..+.+..++|.||.. ..+...|..+++++.... .+.+.+.++..+... +.++.+...+
T Consensus 347 A~~yy~~Aa~~----G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~ 420 (552)
T KOG1550|consen 347 AFEYYSLAAKA----GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALY 420 (552)
T ss_pred HHHHHHHHHHc----CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHH
Confidence 88888755432 235566678888765 358899999999988765 333445566555443 7888887777
Q ss_pred HhhcccCCCch---hhhhhhhcccCcc----chhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhH----h
Q psy12000 339 LLVQNEGLKND---YVYISHLTKCSPS----RAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLR----C 407 (507)
Q Consensus 339 ~~~~~~~~~~~---~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~----~ 407 (507)
........... ..++......... ......++..+.+.... ........++..++.. .
T Consensus 421 ~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----------g~~~a~~~lgd~y~~g~g~~~ 489 (552)
T KOG1550|consen 421 LYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ-----------GNADAILKLGDYYYYGLGTGR 489 (552)
T ss_pred HHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhc-----------cCHHHHhhhcceeeecCCCCC
Confidence 55432221111 1111100001100 11222222222221110 1112223344444432 2
Q ss_pred hHHHHHHHHHHHhhcCCchhhhHHHHHhhccc-ccc--chhHHHHHHHHHhcCCCchh
Q psy12000 408 HYQEAIDIYKRILLDHKDLLALNVYGAMCYYK-LDY--YDVSQEQVAMYLAQKPTSRI 462 (507)
Q Consensus 408 ~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~-~g~--~~~A~~~~~~~l~~~P~~~~ 462 (507)
+++.|...|.++.... ....+++|..+.. .|- ...|...++++.+.+++...
T Consensus 490 d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~~~ 544 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRAYL 544 (552)
T ss_pred ChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchhhh
Confidence 6888999998887766 6666777776652 222 57888888888776655443
No 270
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.98 E-value=0.3 Score=46.02 Aligned_cols=129 Identities=9% Similarity=-0.071 Sum_probs=77.9
Q ss_pred HHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-hccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHH
Q psy12000 14 YCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFY-LGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEY 92 (507)
Q Consensus 14 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (507)
...-..+..+.|..+|.++++..+....+|...|.+-+. .++.+-|..+|+.+.+..+.
T Consensus 9 ~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-------------------- 68 (280)
T PF05843_consen 9 RFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-------------------- 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--------------------
T ss_pred HHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--------------------
Confidence 334445567888888888876666667778777877666 45545477777765321111
Q ss_pred HHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 93 HQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL---ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 93 ~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
++.-++.....+...|+.+.|..+|++++..-|... .++-.....-.+.|+.+...++.+++....|+..
T Consensus 69 ------~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 69 ------DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp -------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred ------CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 111122333445566778888888888877766543 3455555555667788888888777777777644
No 271
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.94 E-value=0.87 Score=38.53 Aligned_cols=142 Identities=10% Similarity=0.014 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH----HHHHHh
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDL--LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI----ALNLKA 175 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----a~~~~a 175 (507)
+.+.-+.-....+..++|+..|..+-+.+-.. .-+....|.+....|+...|+..|..+-...|--.. +-..-+
T Consensus 60 d~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 60 DAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 34455555667788999999998887665332 345667788889999999999999998765543222 222224
Q ss_pred hhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc--CCCChHHHHHHHHH
Q psy12000 176 CNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL--EPSVPQEYILKAVV 247 (507)
Q Consensus 176 ~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~--~~~~~~~~~~~~~~ 247 (507)
.++.-.|.|++-....+.+ ..+-.+....++..||..-++.|++.+|...|..+ +...|.....++.+
T Consensus 140 ~lLvD~gsy~dV~srvepL----a~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq~ 209 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPL----AGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQI 209 (221)
T ss_pred HHHhccccHHHHHHHhhhc----cCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHHH
Confidence 4445567777776655543 12334455568888999999999999999999876 33344443334433
No 272
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.94 E-value=1.5 Score=41.25 Aligned_cols=118 Identities=15% Similarity=0.039 Sum_probs=72.7
Q ss_pred HHhhcHHHHHHHHHHHHHh----CCch----hHHHHHHHHHHHhcC-CHHHHHHHHHHHHhc-------CCCcHH-----
Q psy12000 111 FLRCHYQEAIDIYKRILLD----HKDL----LALNVYGAMCYYKLD-YYDVSQEQVAMYLAQ-------KPTSRI----- 169 (507)
Q Consensus 111 ~~~g~~~~A~~~~~~~l~~----~p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~-------~p~~~~----- 169 (507)
-.+|+++.|..+|.++-.. +|+. ....|+.|...+..+ +++.|...++++.+. +...+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 3679999999999987544 3443 357788999999999 999999999988654 222222
Q ss_pred --HHHHHhhhhhhccChH---HHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000 170 --ALNLKACNTYKLFTSR---AAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL 233 (507)
Q Consensus 170 --a~~~~a~~~~~~~~~~---~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~ 233 (507)
.+..++..+...+..+ .|...++.+. ..-+..+..+..-..+..+.++.+++.+.+.++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~-----~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~m 147 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLE-----SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRM 147 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-----HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHH
Confidence 2334455555555543 3333333332 223344555544444455567777777766654
No 273
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.86 E-value=3.1 Score=44.30 Aligned_cols=188 Identities=14% Similarity=0.090 Sum_probs=85.3
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH-HhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhH
Q psy12000 132 DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNL-KACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESR 210 (507)
Q Consensus 132 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~-~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 210 (507)
+..+.+.+.+..+...|..++|+++.-.+ .+|...-...- .+.-.+..++..--....+. +-.+....+|..-
T Consensus 345 ~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~----lP~~~l~~~P~Lv 418 (894)
T COG2909 345 RLKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSLLLAWLKA----LPAELLASTPRLV 418 (894)
T ss_pred chhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHHHHHHHHh----CCHHHHhhCchHH
Confidence 34677788888888899999998764322 23322211100 00001111111111111111 0001111234444
Q ss_pred HHHHHHHHhhccHHHHHHHHHhcC-----CCChHH-------HHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccc
Q psy12000 211 LNLVIYHLKQEEHQEAFDLIKNLE-----PSVPQE-------YILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSEC 278 (507)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~l~~~~-----~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~ 278 (507)
+..+.....+.++++|-.++.++. |..+.. ..+++.+....|+...+.. -|.....+++......
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~---lar~al~~L~~~~~~~ 495 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAED---LARLALVQLPEAAYRS 495 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHhcccccchh
Confidence 555666777889999988776541 111111 1233444433333322222 2222222232221111
Q ss_pred cchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc------hHHHHHHHHHHhhC
Q psy12000 279 DTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD------SFNFNFAQAKCALG 329 (507)
Q Consensus 279 ~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~------~~~~~lg~~~~~~g 329 (507)
.+.+...+|.+..-.|++++|..+.+.+.+...... .+.+-.+.++..+|
T Consensus 496 -r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 496 -RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred -hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 122233467777778888888877766654432222 22233456666777
No 274
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.84 E-value=0.0081 Score=34.88 Aligned_cols=32 Identities=25% Similarity=0.202 Sum_probs=25.3
Q ss_pred hHHHHHhhccccccchhHHHHHHHHHhcCCCc
Q psy12000 429 LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 460 (507)
Q Consensus 429 ~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~ 460 (507)
.+..+|.++..+|++++|+..++.+++.+|++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 45667888888888888888888888887753
No 275
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.80 E-value=0.017 Score=33.44 Aligned_cols=31 Identities=26% Similarity=0.199 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000 136 LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 166 (507)
Q Consensus 136 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 166 (507)
++..+|.++..+|++++|+..++++++.+|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4455666666666666666666666655553
No 276
>KOG1550|consensus
Probab=95.80 E-value=2 Score=44.77 Aligned_cols=126 Identities=13% Similarity=0.109 Sum_probs=85.9
Q ss_pred hhHHHHHHHh-----hcCHHHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhhc-----cHHHHHHHHHhCCCCcccc
Q psy12000 9 DAWLGYCHFH-----LGQYKQALGIYETLRHL-----PNPPEDTEFNIASCYFYLG-----MYLQANQILEKVPPSRAKT 73 (507)
Q Consensus 9 ~~~lg~~~~~-----~g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g-----~~~eA~~~~~~~~~~~~~~ 73 (507)
...+|.+|+. ..|.+.|+.+|+.+.+. .-..+.+.+.+|.+|.... +++.|..++.++.....
T Consensus 247 ~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-- 324 (552)
T KOG1550|consen 247 QYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-- 324 (552)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--
Confidence 3446666664 37899999999988761 1113456778888888753 56667777766543221
Q ss_pred chHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh----
Q psy12000 74 RLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRC---HYQEAIDIYKRILLDHKDLLALNVYGAMCYYK---- 146 (507)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---- 146 (507)
+...+.+|.++.... ++..|.++|..+.... +..+.+.+|.||..
T Consensus 325 --------------------------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 325 --------------------------PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGV 376 (552)
T ss_pred --------------------------chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCc
Confidence 222556666666544 6789999999886544 56778888888875
Q ss_pred cCCHHHHHHHHHHHHhcC
Q psy12000 147 LDYYDVSQEQVAMYLAQK 164 (507)
Q Consensus 147 ~g~~~~A~~~~~~~l~~~ 164 (507)
.-+...|..+++++...+
T Consensus 377 ~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCCHHHHHHHHHHHHHcc
Confidence 236788888888887776
No 277
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.64 E-value=1.1 Score=43.61 Aligned_cols=141 Identities=12% Similarity=-0.009 Sum_probs=87.3
Q ss_pred HHHHHHHHHH---hhcHHHHHHHHHHH-HHhCCchhHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 103 QLCLASIHFL---RCHYQEAIDIYKRI-LLDHKDLLALNVYGAMCYYK---------LDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 103 ~~~la~~~~~---~g~~~~A~~~~~~~-l~~~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
....|.++.. .|+.++|+.++..+ ....+.+++++..+|.+|-. ....++|+..|.+....+|+.-.
T Consensus 182 ~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~ 261 (374)
T PF13281_consen 182 KFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS 261 (374)
T ss_pred HHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc
Confidence 5567777777 89999999999994 45556788888888887732 33588999999999999998877
Q ss_pred HHHHHhhhhhhccChHHHHHhhHHHH---HhhCCCCCCC-hhHhHH---HHHHHHHhhccHHHHHHHHHhcCCCChHHHH
Q psy12000 170 ALNLKACNTYKLFTSRAAENQLKPIL---VSILPPLIDV-IPESRL---NLVIYHLKQEEHQEAFDLIKNLEPSVPQEYI 242 (507)
Q Consensus 170 a~~~~a~~~~~~~~~~~A~~~l~~~~---~~~~~~~~~~-~~~~~~---~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~ 242 (507)
+.|+...+... |........+.++. ...+...... ...-+. .++-+.+-.|++++|...++++....|..|.
T Consensus 262 GIN~AtLL~~~-g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 262 GINAATLLMLA-GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred hHHHHHHHHHc-CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 77755444333 32222221222211 0000000000 011222 3444566688999999888887666666665
Q ss_pred HH
Q psy12000 243 LK 244 (507)
Q Consensus 243 ~~ 244 (507)
+.
T Consensus 341 l~ 342 (374)
T PF13281_consen 341 LE 342 (374)
T ss_pred HH
Confidence 44
No 278
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.60 E-value=2.6 Score=41.40 Aligned_cols=51 Identities=8% Similarity=0.014 Sum_probs=44.4
Q ss_pred HHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHH
Q psy12000 401 SIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAM 452 (507)
Q Consensus 401 ~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~ 452 (507)
.-.|..|+|.+++.+-.-+.+..| ++.++-.+|+|.+...+|++|-+++..
T Consensus 470 EyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 344567999999999999999999 888888899999999999999988764
No 279
>KOG1538|consensus
Probab=95.51 E-value=1.9 Score=44.00 Aligned_cols=56 Identities=16% Similarity=0.326 Sum_probs=36.6
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcC--------------CCCChhhHHHHHHHHHhhccHHHHHHHHHhCCC
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHL--------------PNPPEDTEFNIASCYFYLGMYLQANQILEKVPP 68 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~--------------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~ 68 (507)
+|......=+++-|.+.|-++-.. ....|+ -..+|.+....|+|.||.+.|.+...
T Consensus 591 LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~G~ 660 (1081)
T KOG1538|consen 591 LAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRSGH 660 (1081)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHcCc
Confidence 455555666666776666654321 112122 24788889999999999999988753
No 280
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.45 E-value=0.35 Score=39.83 Aligned_cols=76 Identities=11% Similarity=0.036 Sum_probs=65.7
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccC
Q psy12000 108 SIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT 183 (507)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~ 183 (507)
..-...++.+++..++..+--..|+.+++...-|.+++..|+|++|+.+|+.+....|..+.+.-+++.+++-+|+
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 3334488999999999998888999999999999999999999999999999998888888877778888776655
No 281
>KOG4814|consensus
Probab=95.44 E-value=0.12 Score=52.29 Aligned_cols=93 Identities=22% Similarity=0.107 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKD------LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC 176 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~ 176 (507)
+.+-|.-+++.++|..+++.|...+...|. +......++.||..+.|.|.|.++++++-+.+|.++..-....+
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 557788899999999999999999988774 34566788999999999999999999999999999987666666
Q ss_pred hhhhccChHHHHHhhHHHH
Q psy12000 177 NTYKLFTSRAAENQLKPIL 195 (507)
Q Consensus 177 ~~~~~~~~~~A~~~l~~~~ 195 (507)
+....++.++|...+..+.
T Consensus 437 ~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHhcchHHHHHHHHHHH
Confidence 6677888888887777654
No 282
>KOG1538|consensus
Probab=95.22 E-value=4.3 Score=41.66 Aligned_cols=93 Identities=19% Similarity=0.230 Sum_probs=47.3
Q ss_pred HHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHH
Q psy12000 14 YCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYH 93 (507)
Q Consensus 14 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (507)
++|...|.+++|...- ++-.-. .-|-.+|......=+++-|.+.|.++.+.+. +.+ +.+..
T Consensus 564 ~q~Ieag~f~ea~~ia--clgVv~---~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~-----L~l---------i~EL~ 624 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIA--CLGVTD---TDWRELAMEALEALDFETARKAYIRVRDLRY-----LEL---------ISELE 624 (1081)
T ss_pred hhhhhccchhhhhccc--ccceec---chHHHHHHHHHhhhhhHHHHHHHHHHhccHH-----HHH---------HHHHH
Confidence 3455666666654431 111111 2355666666666666666666655533211 000 00011
Q ss_pred HHHh-hcHHHHHHHHHHHHHhhcHHHHHHHHHH
Q psy12000 94 QKLE-DSLEEQLCLASIHFLRCHYQEAIDIYKR 125 (507)
Q Consensus 94 ~~l~-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 125 (507)
+.-+ ....+-..+|.+..-+|+|.||..+|.+
T Consensus 625 ~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 625 ERKKRGETPNDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHH
Confidence 1101 1112355678888889999999988876
No 283
>KOG2041|consensus
Probab=95.11 E-value=4.8 Score=41.67 Aligned_cols=180 Identities=10% Similarity=-0.069 Sum_probs=87.4
Q ss_pred hcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccc---cchHHHHHHh------cCChhHHHHHHHHHhhcHHHH
Q psy12000 33 RHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAK---TRLSFHLSHK------LGDEKSLMEYHQKLEDSLEEQ 103 (507)
Q Consensus 33 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~ 103 (507)
++.+| +++.|-.+|......-.++-|+..|-+..+.+-- .++.-..... .+..+..+++.+..-+ .+.
T Consensus 686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld--~dr 762 (1189)
T KOG2041|consen 686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLD--ADR 762 (1189)
T ss_pred HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhc--cch
Confidence 34466 5689999999998888899998888776542211 0000000000 0001111111110000 001
Q ss_pred HHHH-HHHHHhhcHHHHHHHHHHHHHhCCc--hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000 104 LCLA-SIHFLRCHYQEAIDIYKRILLDHKD--LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180 (507)
Q Consensus 104 ~~la-~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~ 180 (507)
--|| .++.+.|++-.-.++++..-....| -.+++.++|..+..+-.|++|.++|...-... ....++++
T Consensus 763 rDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e--------~~~ecly~ 834 (1189)
T KOG2041|consen 763 RDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE--------NQIECLYR 834 (1189)
T ss_pred hhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH--------hHHHHHHH
Confidence 1122 2333445555555444432211111 24577778888888888888888877642111 11233444
Q ss_pred ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000 181 LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN 232 (507)
Q Consensus 181 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~ 232 (507)
...+++-+..-. .+++. .+..-.+|..+.+.|.-++|.+.+-+
T Consensus 835 le~f~~LE~la~-----~Lpe~----s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 835 LELFGELEVLAR-----TLPED----SELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHhhhhHHHHHH-----hcCcc----cchHHHHHHHHHhhchHHHHHHHHHh
Confidence 444444332211 12222 22333567777778888888776644
No 284
>KOG3824|consensus
Probab=94.97 E-value=0.073 Score=48.88 Aligned_cols=72 Identities=13% Similarity=-0.027 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA 175 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a 175 (507)
+..|.-..+.|+.++|..+|+.++...|++++++...|......++.-+|-.+|-+++..+|.+..|+...+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 345666788999999999999999999999999999999999999999999999999999999998865443
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.94 E-value=0.13 Score=43.04 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=26.9
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccc
Q psy12000 397 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYY 443 (507)
Q Consensus 397 ~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~ 443 (507)
..-++++..+|++.+|+.+|+.+....|..+...-.+++|++.+|+.
T Consensus 48 ~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 48 LFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33455555556666666666665555565555555556666555543
No 286
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.91 E-value=0.076 Score=40.17 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=40.0
Q ss_pred HHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCc
Q psy12000 412 AIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 460 (507)
Q Consensus 412 Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~ 460 (507)
.+..+++.+..+|+++...+.+|.++...|++++|++.+-.+++.+|+.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3556778888999999999999999999999999999999999988876
No 287
>KOG0985|consensus
Probab=94.84 E-value=7.3 Score=42.34 Aligned_cols=184 Identities=16% Similarity=0.086 Sum_probs=96.1
Q ss_pred cCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHh--
Q psy12000 20 GQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLE-- 97 (507)
Q Consensus 20 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-- 97 (507)
++.+.|.++-+++ +.+++|..+|......|...+|++.|-++.+..... -....+...+..+++..+....+
T Consensus 1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~-eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYL-EVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHH-HHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 5556666655554 234566667776666777777776666654311100 01112222222222222221111
Q ss_pred -----------------------------hcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC
Q psy12000 98 -----------------------------DSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD 148 (507)
Q Consensus 98 -----------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 148 (507)
.+..+.-..|.-.+..|.|+.|.-+|..+ .-+..+|.....+|
T Consensus 1163 ~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~Lg 1234 (1666)
T KOG0985|consen 1163 VREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLG 1234 (1666)
T ss_pred hcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHH
Confidence 11122445667777777777777666543 33456777888888
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHH--hhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHH
Q psy12000 149 YYDVSQEQVAMYLAQKPTSRIALNLK--ACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEA 226 (507)
Q Consensus 149 ~~~~A~~~~~~~l~~~p~~~~a~~~~--a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 226 (507)
+|+.|....+++ ++...|... ||+. .+.+.-| ++..-..-.+.+-.-.|...|...|-+++-
T Consensus 1235 eyQ~AVD~aRKA-----ns~ktWK~VcfaCvd--~~EFrlA---------QiCGL~iivhadeLeeli~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1235 EYQGAVDAARKA-----NSTKTWKEVCFACVD--KEEFRLA---------QICGLNIIVHADELEELIEYYQDRGYFEEL 1298 (1666)
T ss_pred HHHHHHHHhhhc-----cchhHHHHHHHHHhc--hhhhhHH---------HhcCceEEEehHhHHHHHHHHHhcCcHHHH
Confidence 888888776654 222222211 2321 1122222 122222223445556788889999999999
Q ss_pred HHHHHhc
Q psy12000 227 FDLIKNL 233 (507)
Q Consensus 227 ~~~l~~~ 233 (507)
+.+++..
T Consensus 1299 Isl~Ea~ 1305 (1666)
T KOG0985|consen 1299 ISLLEAG 1305 (1666)
T ss_pred HHHHHhh
Confidence 8888754
No 288
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.82 E-value=4.3 Score=39.55 Aligned_cols=25 Identities=8% Similarity=0.037 Sum_probs=15.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHhhhhc
Q psy12000 287 MASSFFLLRSFKDVILYLSSIKSYY 311 (507)
Q Consensus 287 la~~~~~~~~~~~Ai~~~~~~~~~~ 311 (507)
++.+....|++++|++.++++....
T Consensus 311 l~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 311 LLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 4555566666666666666665553
No 289
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.65 E-value=2.4 Score=35.96 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=25.3
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHH
Q psy12000 283 GRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAK 325 (507)
Q Consensus 283 ~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~ 325 (507)
++..||..-++.|++.+|...|..+.. +...|....+.+.+.
T Consensus 169 ArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 169 AREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred HHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 455677777777888888877777765 223333334444443
No 290
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.63 E-value=0.57 Score=45.72 Aligned_cols=37 Identities=27% Similarity=0.237 Sum_probs=32.3
Q ss_pred HHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCC
Q psy12000 31 TLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVP 67 (507)
Q Consensus 31 ~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~ 67 (507)
.+++.+|.+.+.+..++.++..+|+.+.|.+.++++.
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456789999999999999999999999999988863
No 291
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.55 E-value=9.2 Score=42.20 Aligned_cols=98 Identities=16% Similarity=0.055 Sum_probs=68.4
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhh-------ccHHHHHHHHHhCCCCccccchHHHHH
Q psy12000 11 WLGYCHFHLGQYKQALGIYETLRHLPNPPE---DTEFNIASCYFYL-------GMYLQANQILEKVPPSRAKTRLSFHLS 80 (507)
Q Consensus 11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~-------g~~~eA~~~~~~~~~~~~~~~~~~~~~ 80 (507)
.+..+......|+.|+..|+++-...|.-. ++.+..|.....+ ..+++|+..|++...++
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 549 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGV---------- 549 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCC----------
Confidence 356778888999999999999999998765 4566666554332 12333333333322111
Q ss_pred HhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhH
Q psy12000 81 HKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLA 135 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 135 (507)
..|-.++..|.+|-..|+|+|=+++|.-+++..|.+|.
T Consensus 550 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 550 -----------------GAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred -----------------CCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 11334778899999999999999999999999987764
No 292
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.52 E-value=7.7 Score=41.16 Aligned_cols=65 Identities=9% Similarity=0.005 Sum_probs=47.5
Q ss_pred HHHHHHhHhhHHHHHHHHHHHhhc---CCc------hhhhHHHHHhhccccccchhHHHHHH--------HHHhcCCCch
Q psy12000 399 LASIHFLRCHYQEAIDIYKRILLD---HKD------LLALNVYGAMCYYKLDYYDVSQEQVA--------MYLAQKPTSR 461 (507)
Q Consensus 399 l~~~~~~~~~~~~Ai~~~~~~l~~---~p~------~~~~~~~la~~y~~~g~~~~A~~~~~--------~~l~~~P~~~ 461 (507)
.++..+..+++..|....+.+... .|. .+.+++..|+.+...|+.+.|+..|. .+....|.+.
T Consensus 367 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E 446 (608)
T PF10345_consen 367 QIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE 446 (608)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence 345666678888888888877642 333 35577788999999999999999997 5556666655
Q ss_pred hh
Q psy12000 462 IA 463 (507)
Q Consensus 462 ~a 463 (507)
..
T Consensus 447 l~ 448 (608)
T PF10345_consen 447 LY 448 (608)
T ss_pred HH
Confidence 43
No 293
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.37 E-value=2.1 Score=41.82 Aligned_cols=37 Identities=8% Similarity=-0.007 Sum_probs=33.2
Q ss_pred HHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000 125 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL 161 (507)
Q Consensus 125 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 161 (507)
.++..+|.+.+++..++.++..+|+.+.|-+++++++
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999886
No 294
>KOG0890|consensus
Probab=94.16 E-value=14 Score=44.15 Aligned_cols=66 Identities=8% Similarity=-0.001 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
...-..+...|+++.|..+|+++++.+|+....+...-.+.+..|.++..+...+-.....++...
T Consensus 1453 ~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~ 1518 (2382)
T KOG0890|consen 1453 YQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVD 1518 (2382)
T ss_pred HHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHH
Confidence 344456677899999999999999999998777776667778888888888877766555554443
No 295
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.16 E-value=3.1 Score=36.07 Aligned_cols=100 Identities=12% Similarity=-0.006 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc---hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCcHHHHHHHhhh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKD---LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK--PTSRIALNLKACN 177 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~a~~~~a~~ 177 (507)
+..+|..|.+.|+.++|++.|.++...... ..+..+++-.+.+..+++.....++.++-..- +.+....+
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n----- 113 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN----- 113 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH-----
Confidence 778999999999999999999998876543 34677788888899999999988888764321 11111110
Q ss_pred hhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCC
Q psy12000 178 TYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSV 237 (507)
Q Consensus 178 ~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~ 237 (507)
.....-|..++.+++|.+|...|-...+..
T Consensus 114 ------------------------------rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 114 ------------------------------RLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred ------------------------------HHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 112234566778899999999887765554
No 296
>KOG2041|consensus
Probab=94.07 E-value=8.6 Score=39.96 Aligned_cols=183 Identities=15% Similarity=0.055 Sum_probs=90.9
Q ss_pred HHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH---------HHHhhhhhhccChHHHHHhhHHHHHh
Q psy12000 127 LLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL---------NLKACNTYKLFTSRAAENQLKPILVS 197 (507)
Q Consensus 127 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~---------~~~a~~~~~~~~~~~A~~~l~~~~~~ 197 (507)
++.+| ++..|..+|..-...-.++.|...|-++-. -|.-.... ...|.+..-.|.+++|++.+-.+
T Consensus 686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~--- 760 (1189)
T KOG2041|consen 686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDA--- 760 (1189)
T ss_pred HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhcc---
Confidence 33444 456666777666666666666665554311 11110000 11222333345666666543222
Q ss_pred hCCCCCCChhHhHHHHH-HHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcc
Q psy12000 198 ILPPLIDVIPESRLNLV-IYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQS 276 (507)
Q Consensus 198 ~~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~ 276 (507)
+ +..|+ -++.+.|+|-.-+.+++.-.....+. .+-.+.-.+|+.-......+.|.++|..-...
T Consensus 761 -----d------rrDLAielr~klgDwfrV~qL~r~g~~d~dD~--~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-- 825 (1189)
T KOG2041|consen 761 -----D------RRDLAIELRKKLGDWFRVYQLIRNGGSDDDDE--GKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-- 825 (1189)
T ss_pred -----c------hhhhhHHHHHhhhhHHHHHHHHHccCCCcchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--
Confidence 1 11222 24555666666666665432221111 11223334444444445566677766543321
Q ss_pred cccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhh
Q psy12000 277 ECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLV 341 (507)
Q Consensus 277 ~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 341 (507)
..++.|+++...|++-..+ ...-|++...+=.+|.++..-|.-++|.+.|.+.
T Consensus 826 --------e~~~ecly~le~f~~LE~l----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 826 --------ENQIECLYRLELFGELEVL----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred --------HhHHHHHHHHHhhhhHHHH----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 1356777777777654332 2223445445556788888888888888877664
No 297
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.06 E-value=0.23 Score=44.50 Aligned_cols=62 Identities=18% Similarity=0.114 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhcHH-------HHHHHHHHHHHhC--C----chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000 103 QLCLASIHFLRCHYQ-------EAIDIYKRILLDH--K----DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 164 (507)
Q Consensus 103 ~~~la~~~~~~g~~~-------~A~~~~~~~l~~~--p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 164 (507)
.+.+|++|...|+-+ .|.+.|.+++... | +...+.+.+|.++.+.|++++|.+.|.+++...
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 678899999988844 5777777776554 2 335788899999999999999999999998643
No 298
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.88 E-value=6.8 Score=38.09 Aligned_cols=52 Identities=21% Similarity=0.253 Sum_probs=36.3
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhhccHHHHHHHHHhCC
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPN-PPEDTEFNIASCYFYLGMYLQANQILEKVP 67 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~~~ 67 (507)
.+.+.-.+|+++. +.+.+...+ ..++..+..+......|+++++...++++.
T Consensus 4 ~~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r 56 (352)
T PF02259_consen 4 AAEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKAR 56 (352)
T ss_pred HHHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3567788899988 333333322 334667777878889999999999887763
No 299
>KOG1464|consensus
Probab=93.77 E-value=5.3 Score=36.49 Aligned_cols=111 Identities=18% Similarity=0.197 Sum_probs=65.9
Q ss_pred hcCHHHHHHHHHHHhcCCCCChh----hHHHHHHHHHhhccHHHHHHHHHhCCC-------Cccccc----hHHHHHHhc
Q psy12000 19 LGQYKQALGIYETLRHLPNPPED----TEFNIASCYFYLGMYLQANQILEKVPP-------SRAKTR----LSFHLSHKL 83 (507)
Q Consensus 19 ~g~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~eA~~~~~~~~~-------~~~~~~----~~~~~~~~~ 83 (507)
..+.++|+..|+++++..|...+ +.-.+..+++++|+|++-...+++... ...... ++-.+. ..
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS-tS 118 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS-TS 118 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh-hh
Confidence 45799999999999999987653 445577789999999999988876421 111111 111111 11
Q ss_pred CChhHHHH----HHHHHhhcHHH------HHHHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy12000 84 GDEKSLME----YHQKLEDSLEE------QLCLASIHFLRCHYQEAIDIYKRILLDH 130 (507)
Q Consensus 84 ~~~~~~~~----~~~~l~~~~~~------~~~la~~~~~~g~~~~A~~~~~~~l~~~ 130 (507)
...+-+.. -...+++.-.+ -..||.+|+..|+|.+-.++++++-..+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SC 175 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSC 175 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHh
Confidence 11111211 12222222111 2357888888888888877777765543
No 300
>KOG3783|consensus
Probab=93.69 E-value=8.7 Score=38.73 Aligned_cols=61 Identities=15% Similarity=-0.025 Sum_probs=49.0
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHhhhh---cCC----CchHHHHHHHHHHhhCC-HHHHHHHHHhhccc
Q psy12000 284 RQCMASSFFLLRSFKDVILYLSSIKSY---YTS----DDSFNFNFAQAKCALGQ-YKEAEEMFLLVQNE 344 (507)
Q Consensus 284 ~~~la~~~~~~~~~~~Ai~~~~~~~~~---~~~----~~~~~~~lg~~~~~~g~-~~~A~~~~~~~~~~ 344 (507)
+..+|.++-..|+-..|..+|+...+. ... .|.++|.+|..|..+|. ..+|.+++.++.+.
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 456799999999999999988866521 112 26788999999999998 99999999998753
No 301
>KOG1464|consensus
Probab=93.53 E-value=2.8 Score=38.15 Aligned_cols=115 Identities=12% Similarity=0.038 Sum_probs=66.5
Q ss_pred hhcHHHHHHHHHHHHHhCCchh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCc-HHHHHH-Hhhhhhh-
Q psy12000 113 RCHYQEAIDIYKRILLDHKDLL----ALNVYGAMCYYKLDYYDVSQEQVAMYLAQ-----KPTS-RIALNL-KACNTYK- 180 (507)
Q Consensus 113 ~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~-~~a~~~-~a~~~~~- 180 (507)
..+.++|++.|+++++..|+-. .+.-.+-.+++++|+|++..+.|.+++.- ..+. ....+. +-.+.-.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3478999999999999988643 45556677899999999999888887631 1111 111111 1001000
Q ss_pred -c----cChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000 181 -L----FTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL 233 (507)
Q Consensus 181 -~----~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~ 233 (507)
. .-++.-..+++.+- +..........||.+|+..++|.+-...++++
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAK------NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqL 171 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAK------NERLWFKTNTKLGKLYFDRGEYTKLQKILKQL 171 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhh------cceeeeeccchHhhhheeHHHHHHHHHHHHHH
Confidence 0 01122222222221 11111122346899999999999988888765
No 302
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.41 E-value=3.8 Score=39.47 Aligned_cols=117 Identities=13% Similarity=-0.002 Sum_probs=75.7
Q ss_pred hcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc-----ChHHHH
Q psy12000 114 CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF-----TSRAAE 188 (507)
Q Consensus 114 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~-----~~~~A~ 188 (507)
.-.+.-+.+|+++|+.+|++..++...-.+..+..+-++..+.+++++..+|++..-+ .+.+.+.++ .+....
T Consensus 45 a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW--~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 45 ALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELW--REYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHH--HHHHHHHHHHhccCcHHHHH
Confidence 3456788999999999999999888777788888889999999999999999987643 223333332 344555
Q ss_pred HhhHHHHHhhC---CC---CCCCh-------hHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000 189 NQLKPILVSIL---PP---LIDVI-------PESRLNLVIYHLKQEEHQEAFDLIKN 232 (507)
Q Consensus 189 ~~l~~~~~~~~---~~---~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~l~~ 232 (507)
..|.+.++... .. ..+.. ......+.......|..+.|+..++.
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa 179 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQA 179 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHH
Confidence 55554432100 00 00111 12344455556667778888777653
No 303
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.32 E-value=0.13 Score=45.28 Aligned_cols=62 Identities=13% Similarity=-0.004 Sum_probs=57.3
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 108 SIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
....+.++.+.|.+.|.+++..-|+...-|+.+|....+.|+++.|...+++.++.+|.+..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34566799999999999999999999999999999999999999999999999999998865
No 304
>KOG2300|consensus
Probab=93.03 E-value=10 Score=37.68 Aligned_cols=133 Identities=15% Similarity=0.174 Sum_probs=72.7
Q ss_pred HHHHHHHHhhccHHHHHHHHHhcC---CCChHHHH---HHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchh--
Q psy12000 211 LNLVIYHLKQEEHQEAFDLIKNLE---PSVPQEYI---LKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVP-- 282 (507)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~l~~~~---~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-- 282 (507)
.+++.+-+-.|++.+|++.+..+. ...|.-.+ ..+.++..+|.+.-..+.++.|+.-|......-... .+.
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-dl~a~ 405 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-DLQAF 405 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-HHHHH
Confidence 345556667889998887765431 12222111 234456666665555556666665553221110011 111
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCC-------chHHHHHHHHHHhhCCHHHHHHHHHhhccc
Q psy12000 283 GRQCMASSFFLLRSFKDVILYLSSIKSYYTSD-------DSFNFNFAQAKCALGQYKEAEEMFLLVQNE 344 (507)
Q Consensus 283 ~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~ 344 (507)
.-.++|.+|...|+-+.--+.++.+--.+.+. ..++|-.|...+.++++.||...+.+.++.
T Consensus 406 ~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 406 CNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKM 474 (629)
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 12357888888776655544444432221111 245566777888888888888888876643
No 305
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.03 E-value=0.12 Score=45.62 Aligned_cols=58 Identities=14% Similarity=0.035 Sum_probs=54.0
Q ss_pred HhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhh
Q psy12000 406 RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA 463 (507)
Q Consensus 406 ~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a 463 (507)
.++.+-|.+.|.+++..-|++...++.+|..-.|.|+++.|...|+++++++|++-..
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 4788899999999999999999999999999999999999999999999999998754
No 306
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.92 E-value=5.4 Score=40.18 Aligned_cols=125 Identities=17% Similarity=0.114 Sum_probs=65.1
Q ss_pred HHHHhhcCHHHHHHHHH--HHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHH
Q psy12000 14 YCHFHLGQYKQALGIYE--TLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLME 91 (507)
Q Consensus 14 ~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (507)
......||++++.+... +++..-| .+....++.-+.+.|..+.|+.+... + +..|.++...++.+.+.+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D-----~--~~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD-----P--DHRFELALQLGNLDIALE 339 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS------H--HHHHHHHHHCT-HHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC-----h--HHHhHHHHhcCCHHHHHH
Confidence 44556788888777665 2232222 34466788888888999988875321 1 245677766655444333
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHH
Q psy12000 92 YHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQ 156 (507)
Q Consensus 92 ~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 156 (507)
....+. .+.-+-.||.....+|+++-|.++|+++= + +..|..+|.-.|+.++=.++
T Consensus 340 ~a~~~~-~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----d----~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 340 IAKELD-DPEKWKQLGDEALRQGNIELAEECYQKAK----D----FSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp HCCCCS-THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHH
T ss_pred HHHhcC-cHHHHHHHHHHHHHcCCHHHHHHHHHhhc----C----ccccHHHHHHhCCHHHHHHH
Confidence 222221 23346677777777777777777776632 1 22345566666665444333
No 307
>KOG4507|consensus
Probab=92.84 E-value=0.77 Score=46.21 Aligned_cols=68 Identities=12% Similarity=-0.034 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA 170 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a 170 (507)
..+||.++.+.|-.-.|-..+.+.+.++...+-..+.+|.+|..+.+.++|++.|+.+++.+|+++..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPEC 712 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhh
Confidence 67899999999999999999999999998788888999999999999999999999999999999874
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.80 E-value=0.23 Score=30.98 Aligned_cols=28 Identities=18% Similarity=0.045 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 135 ALNVYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 135 ~~~~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
.++.++|.+|..+|++++|+.++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567888888888888888888888764
No 309
>KOG2396|consensus
Probab=92.74 E-value=0.39 Score=47.39 Aligned_cols=69 Identities=22% Similarity=0.302 Sum_probs=52.5
Q ss_pred HHHHHHHHhH--hhHHHHHHHHHHHhhcCCchhhhHHHHHhhcccccc-chhHHHHHHHHHhcCCCchhhhh
Q psy12000 397 LCLASIHFLR--CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY-YDVSQEQVAMYLAQKPTSRIALN 465 (507)
Q Consensus 397 ~~l~~~~~~~--~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~-~~~A~~~~~~~l~~~P~~~~a~~ 465 (507)
+.+..+.|.. +.+.+--++|.+++..+|++++++.+-|.-.+..+. .+-|...+...|+.+|++|..+.
T Consensus 107 lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 107 LWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 4445566644 347777888888889999999888887777776665 77888888899999999888644
No 310
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.59 E-value=1.5 Score=34.25 Aligned_cols=102 Identities=17% Similarity=0.099 Sum_probs=61.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhH---HHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTE---FNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS 88 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~---~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (507)
.|..++..||+-+|+++.+..+...+++...| ..-|.+++.+. .+..+++...
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA---------~~ten~d~k~--------------- 57 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA---------KKTENPDVKF--------------- 57 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH---------HhccCchHHH---------------
Confidence 36678889999999999999988888776544 22333222111 1111111000
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
.+ .--|+++|.+.....|+....++.+|.=.-...-|+++....++.+.
T Consensus 58 --------------~y-----------Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 58 --------------RY-----------LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred --------------HH-----------HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 11 12366777777778888777777777655555566777776666654
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.57 E-value=0.6 Score=38.49 Aligned_cols=69 Identities=12% Similarity=0.055 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcC
Q psy12000 407 CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 475 (507)
Q Consensus 407 ~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~ 475 (507)
++.+++...+..+....|+.+.+-..-|+++...|++++|+..++.+.+.-|..|.+.-++++-++-++
T Consensus 24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 444555555555555555555544444555555555555555555555554454544444444444333
No 312
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.46 E-value=0.21 Score=27.65 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHH
Q psy12000 316 SFNFNFAQAKCALGQYKEAEEMFL 339 (507)
Q Consensus 316 ~~~~~lg~~~~~~g~~~~A~~~~~ 339 (507)
.+.+++|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888888888888888775
No 313
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.40 E-value=9.9 Score=35.90 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=31.5
Q ss_pred hhhHHHHHHHh----hcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhC
Q psy12000 283 GRQCMASSFFL----LRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALG 329 (507)
Q Consensus 283 ~~~~la~~~~~----~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g 329 (507)
+...+|.+|.. ..++.+|+.+|+++.+... ....++++ ++...|
T Consensus 189 a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 189 AQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 34457777755 4588999999998877654 55677788 666665
No 314
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.39 E-value=8.7 Score=35.46 Aligned_cols=201 Identities=16% Similarity=0.083 Sum_probs=101.9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCC--------chhHHHHHHHHHHHhcCCHHHHHHHHH---HHHhcCCCcHHHHH
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRILLDHK--------DLLALNVYGAMCYYKLDYYDVSQEQVA---MYLAQKPTSRIALN 172 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~---~~l~~~p~~~~a~~ 172 (507)
+.+|.-..+.+++++|+..|.+++...- +.......++.+|...|++..--+... .+.........+..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 4567777888999999999999987632 234567789999999998765433322 22222222211111
Q ss_pred HHhhhh---hhccChHHHHHhhHHHHHhhCCCCCCC--hhHhHHHHHHHHHhhccHHHHHHHHHh-------cCC--CCh
Q psy12000 173 LKACNT---YKLFTSRAAENQLKPILVSILPPLIDV--IPESRLNLVIYHLKQEEHQEAFDLIKN-------LEP--SVP 238 (507)
Q Consensus 173 ~~a~~~---~~~~~~~~A~~~l~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~l~~-------~~~--~~~ 238 (507)
++..+. +...+.+.-+...+..++ ....-... ..+.--.++.+++++|+|.+|+..+.. ++. .-.
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~ie-wA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIE-WADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 111111 111223333333333221 00000000 001223567789999999999886643 221 112
Q ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhh--HHHHHHHhhcCHHHHHHHHHHhhh
Q psy12000 239 QEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQ--CMASSFFLLRSFKDVILYLSSIKS 309 (507)
Q Consensus 239 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--~la~~~~~~~~~~~Ai~~~~~~~~ 309 (507)
..+.+...++..+.....+...+..|...-..+--++ ...+.. .=|..+....+|.-|..||=.+.+
T Consensus 166 ~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPp----qlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 166 TVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPP----QLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred ehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCH----HHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 2345556666666655555556655544332221111 111111 114445566677777776655543
No 315
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.16 E-value=0.55 Score=28.46 Aligned_cols=29 Identities=28% Similarity=0.309 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhcHHHHHHH--HHHHHHhCC
Q psy12000 103 QLCLASIHFLRCHYQEAIDI--YKRILLDHK 131 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~--~~~~l~~~p 131 (507)
++.+|..++.+|++++|+.. |+-+...+|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 45566666666666666666 334444444
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.12 E-value=0.27 Score=30.57 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDH 130 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~ 130 (507)
+.++|.+|..+|++++|+.++++++...
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 5689999999999999999999998764
No 317
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.07 E-value=1 Score=44.30 Aligned_cols=123 Identities=16% Similarity=0.052 Sum_probs=82.3
Q ss_pred HHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCC---CccccchHHHHHHhcCChhHHHHH
Q psy12000 16 HFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPP---SRAKTRLSFHLSHKLGDEKSLMEY 92 (507)
Q Consensus 16 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 92 (507)
....||...|-+....+++..|..|+.-...+.+.-.+|.|+.|...+..+.. +....
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~------------------- 359 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDST------------------- 359 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchH-------------------
Confidence 34579999999999999999999999999999999999999999987654421 11110
Q ss_pred HHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12000 93 HQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 167 (507)
Q Consensus 93 ~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 167 (507)
.-.+-...+..|++++|.+.-.-++...-+++++..-.|..--.+|-+|+|...+++++.++|..
T Consensus 360 ----------~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 360 ----------LRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred ----------HHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 00112233555666666666666665555555555444444555666677777777766665543
No 318
>KOG3824|consensus
Probab=92.01 E-value=0.27 Score=45.35 Aligned_cols=68 Identities=10% Similarity=-0.039 Sum_probs=60.5
Q ss_pred HHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhh
Q psy12000 403 HFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN 470 (507)
Q Consensus 403 ~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~ 470 (507)
.+..|+.++|..+|+.++...|+++.+...+|.....-++.=+|-.+|-+++.+.|.|..|+.++.+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 34568999999999999999999999999999888888888899999999999999999998876654
No 319
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.88 E-value=1.5 Score=37.99 Aligned_cols=100 Identities=18% Similarity=0.258 Sum_probs=54.3
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChh
Q psy12000 11 WLGYCHFHLGQYKQALGIYETLRHLPNPP---EDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEK 87 (507)
Q Consensus 11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (507)
.+|.-|...||+++|++.|.++.+..... .+.++.+.++.+..|++..+...+.++...... .++..
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~----------~~d~~ 110 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK----------GGDWE 110 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc----------cchHH
Confidence 45666666666666666666655543322 245556666666666666666655554211000 00000
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy12000 88 SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH 130 (507)
Q Consensus 88 ~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 130 (507)
... .-....|..+..+++|.+|.+.|-.++...
T Consensus 111 ----~~n------rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 111 ----RRN------RLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred ----HHH------HHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 000 002345666777899999999887776544
No 320
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.78 E-value=1.2 Score=40.94 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=62.4
Q ss_pred HHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhh
Q psy12000 401 SIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN 470 (507)
Q Consensus 401 ~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~ 470 (507)
..+...++.+.|..+.++.+..+|+++.-.--.|.+|.++|-+.-|++.++-+++.-|+++.+..++..+
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4555667899999999999999999997777789999999999999999999999999999998877664
No 321
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=91.75 E-value=6.8 Score=37.05 Aligned_cols=54 Identities=11% Similarity=-0.095 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000 118 EAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQKPTSRIALNLKA 175 (507)
Q Consensus 118 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~a~~~~a 175 (507)
.|+..|.++-... ++.+.+.+|.+|.. ..++.+|...|+++..... ..+....+
T Consensus 173 ~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 173 KALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred hHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 5666666655444 45555666666644 2356666666666665554 44444444
No 322
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.46 E-value=0.8 Score=50.10 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCC
Q psy12000 408 HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT 476 (507)
Q Consensus 408 ~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~ 476 (507)
.+.+|+..|+++. ..|.-|--+...|.+|.++|+++|-++++.-+++.+|++|..-.+.--+-|++-.
T Consensus 534 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (932)
T PRK13184 534 DFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHE 601 (932)
T ss_pred HHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 5889999998874 3455566667789999999999999999999999999999987777777666553
No 323
>KOG4814|consensus
Probab=91.44 E-value=2.1 Score=43.71 Aligned_cols=94 Identities=22% Similarity=0.107 Sum_probs=74.5
Q ss_pred HHHHHhHhhHHHHHHHHHHHhhcCCch------hhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhh
Q psy12000 400 ASIHFLRCHYQEAIDIYKRILLDHKDL------LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 473 (507)
Q Consensus 400 ~~~~~~~~~~~~Ai~~~~~~l~~~p~~------~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~ 473 (507)
+.-++...+|..++..|+..+..-|.+ .++...++.||.++.+.|.|+++++.+=+-+|.++..-....+..--
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~ 440 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA 440 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 345566789999999999988755433 45677899999999999999999999999999999987777777666
Q ss_pred cCChHHHHHHHHHHHHhCCC
Q psy12000 474 LFTSRAAENQLKPILVSAGP 493 (507)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~ 493 (507)
..+..+|-.-...+....-+
T Consensus 441 E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 441 EDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred hcchHHHHHHHHHHHhhhcc
Confidence 66777777666666655433
No 324
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.11 E-value=10 Score=33.32 Aligned_cols=53 Identities=23% Similarity=0.143 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc----hhHHHHHHHHHHHhcCCHHHH
Q psy12000 100 LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD----LLALNVYGAMCYYKLDYYDVS 153 (507)
Q Consensus 100 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A 153 (507)
++-++.||..|. .-+.++|+.++.++++..+. ++++...||.++.++|+++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344556665544 55777777777777776532 466777777777777777766
No 325
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.05 E-value=0.31 Score=26.98 Aligned_cols=23 Identities=9% Similarity=-0.094 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q psy12000 136 LNVYGAMCYYKLDYYDVSQEQVA 158 (507)
Q Consensus 136 ~~~~la~~~~~~g~~~~A~~~~~ 158 (507)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566666666666666666553
No 326
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.95 E-value=1.2 Score=40.03 Aligned_cols=63 Identities=22% Similarity=0.218 Sum_probs=48.1
Q ss_pred hhhHHHHHHHhhcC-------HHHHHHHHHHHhcCCCC--C----hhhHHHHHHHHHhhccHHHHHHHHHhCCCCc
Q psy12000 8 TDAWLGYCHFHLGQ-------YKQALGIYETLRHLPNP--P----EDTEFNIASCYFYLGMYLQANQILEKVPPSR 70 (507)
Q Consensus 8 ~~~~lg~~~~~~g~-------~~~A~~~~~~~l~~~p~--~----~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~ 70 (507)
+.+.+|.+|-..|+ +..|...|.++.+.... . ..+.+.+|.+..+.|++++|..+|.++..+.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34557888888888 55577777777765432 2 3578899999999999999999999986543
No 327
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.79 E-value=0.85 Score=34.82 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=42.9
Q ss_pred HHHhhcHHHHHHHHHHHHHhCCc---------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000 110 HFLRCHYQEAIDIYKRILLDHKD---------LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ 163 (507)
Q Consensus 110 ~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 163 (507)
....|+|.+|++.+.+.+..... ...+..++|.++...|++++|+..++++++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35679999999988888766432 2356678999999999999999999998754
No 328
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.73 E-value=1.1 Score=41.01 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=62.6
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000 105 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA 175 (507)
Q Consensus 105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a 175 (507)
++=.++...++++.|..+-++.+..+|+++.-..-.|.+|.++|.+.-|++.++.++..-|+.+.+-.++.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 45567788899999999999999999999988888899999999999999999999999999998765443
No 329
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.68 E-value=1.1 Score=32.48 Aligned_cols=56 Identities=16% Similarity=0.077 Sum_probs=45.8
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHH---HHHHHHHhhccHHHHHHHHH
Q psy12000 9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEF---NIASCYFYLGMYLQANQILE 64 (507)
Q Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~---~la~~~~~~g~~~eA~~~~~ 64 (507)
...-|.-+|...+.++|+..+.++++..++.++-+. ++..++...|+|.+++.+.-
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577788999999999999999999888876554 46667889999999998753
No 330
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.37 E-value=2 Score=31.10 Aligned_cols=57 Identities=12% Similarity=0.025 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhH---HHHHHHHHHHhcCCHHHHHHHHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLA---LNVYGAMCYYKLDYYDVSQEQVAM 159 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~ 159 (507)
.+.-|.-++.+.+.++|+..++++++..++.++ +.-.+..+|...|+|.+++.+.-.
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666678999999999999999999877654 455567789999999999887544
No 331
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.20 E-value=0.92 Score=27.46 Aligned_cols=32 Identities=16% Similarity=0.050 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCC
Q psy12000 135 ALNVYGAMCYYKLDYYDVSQEQVA--MYLAQKPT 166 (507)
Q Consensus 135 ~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~p~ 166 (507)
+.++.+|..+...|++++|++.|+ -+...+|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 456788999999999999999955 66666654
No 332
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=90.05 E-value=6.1 Score=30.91 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=23.7
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCCchhH
Q psy12000 106 LASIHFLRCHYQEAIDIYKRILLDHKDLLA 135 (507)
Q Consensus 106 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 135 (507)
+|.-++..|++-+|+++.++++..++++..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~ 31 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES 31 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc
Confidence 356678888999999999988888876653
No 333
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=89.81 E-value=3.8 Score=40.29 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhC---------CchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDH---------KDLLALNVYGAMCYYKLDYYDVSQEQVAMYL 161 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 161 (507)
...|..++...|+|..|++..+.+- .+ +-+..++|.+|.+|+.+++|..|++.|..++
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~id-l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENID-LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccC-cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457789999999999999887642 12 2356788999999999999999999999986
No 334
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.44 E-value=2.6 Score=41.51 Aligned_cols=49 Identities=14% Similarity=-0.074 Sum_probs=36.7
Q ss_pred hhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhh
Q psy12000 293 LLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLV 341 (507)
Q Consensus 293 ~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 341 (507)
..|+.-.|-.-...++...|.+|......+.+....|+|+.|.+.+..+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~ 349 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDV 349 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhch
Confidence 3567777776555566666777766666899999999999999988654
No 335
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=89.34 E-value=16 Score=33.87 Aligned_cols=29 Identities=34% Similarity=0.432 Sum_probs=23.2
Q ss_pred CCchHHHHHHHHHHhhCCHHHHHHHHHhh
Q psy12000 313 SDDSFNFNFAQAKCALGQYKEAEEMFLLV 341 (507)
Q Consensus 313 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 341 (507)
.++..+..+|..|.+.|++.+|..+|-..
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 45788888999999999999999999654
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.92 E-value=9.1 Score=38.59 Aligned_cols=30 Identities=10% Similarity=-0.011 Sum_probs=19.4
Q ss_pred CChhhHHHHHHHHHhhccHHHHHHHHHhCC
Q psy12000 38 PPEDTEFNIASCYFYLGMYLQANQILEKVP 67 (507)
Q Consensus 38 ~~~~~~~~la~~~~~~g~~~eA~~~~~~~~ 67 (507)
+++..|-.+|...+.+|+++-|+.++.++.
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 345566666666666677766666666653
No 337
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.67 E-value=1.9 Score=40.13 Aligned_cols=58 Identities=9% Similarity=-0.108 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY 160 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 160 (507)
+..++..+...|+++.+++.+++.+..+|.+..++..+-..|+..|+...|+..|+++
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 3445555556666666666666666666666666666556666666666666655554
No 338
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.34 E-value=0.95 Score=28.84 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 137 NVYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 137 ~~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
.+.+|.+|+.+|+.+.|.+.++.++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35789999999999999999999884
No 339
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=88.18 E-value=11 Score=29.80 Aligned_cols=56 Identities=14% Similarity=0.020 Sum_probs=40.7
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCCc------------hhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000 106 LASIHFLRCHYQEAIDIYKRILLDHKD------------LLALNVYGAMCYYKLDYYDVSQEQVAMYL 161 (507)
Q Consensus 106 la~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l 161 (507)
-|.-...-|-|++|...++++...... +.-.+-.|+.++..+|+|++++.....++
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 344556678999999999999876521 12345668889999999999998877765
No 340
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=87.85 E-value=19 Score=34.65 Aligned_cols=153 Identities=8% Similarity=0.041 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHc
Q psy12000 297 FKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL 376 (507)
Q Consensus 297 ~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 376 (507)
.+.-+.+++++++.+|++...+..+-.+..+..+.++..+-+++++...+.+...|..+|..+...
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~-------------- 112 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSN-------------- 112 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH--------------
Confidence 345567888888888877766655556666777888888888888876665555554432111000
Q ss_pred CCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcC-------Cc----hhhhHHHHHhhccccccchh
Q psy12000 377 GDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH-------KD----LLALNVYGAMCYYKLDYYDV 445 (507)
Q Consensus 377 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~-------p~----~~~~~~~la~~y~~~g~~~~ 445 (507)
+.. -.+.-...-|.+++..+....... |+ ...+...+..-....|..+.
T Consensus 113 ------------~~~--------f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~ 172 (321)
T PF08424_consen 113 ------------FAS--------FTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTER 172 (321)
T ss_pred ------------hcc--------CcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHH
Confidence 000 001111223444444444443321 11 12334445556668888888
Q ss_pred HHHHHHHHHhcC---CCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000 446 SQEQVAMYLAQK---PTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR 494 (507)
Q Consensus 446 A~~~~~~~l~~~---P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
|+..++..++.+ |...... ........|..-|++.-||
T Consensus 173 Ava~~Qa~lE~n~~~P~~~~~~-----------~~~~~~~~fe~FWeS~vpR 213 (321)
T PF08424_consen 173 AVALWQALLEFNFFRPESLSSS-----------SFSERLESFEEFWESEVPR 213 (321)
T ss_pred HHHHHHHHHHHHcCCccccccc-----------cHHHHHHHHHHHhCcCCCC
Confidence 888888888875 3332211 1114455688888886666
No 341
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=87.50 E-value=13 Score=29.55 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=62.0
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCCCh----------hh--HHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHH
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNPPE----------DT--EFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHL 79 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~----------~~--~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 79 (507)
-|.-.+..|-|++|...+.++.+...+-| ++ +-.++..+..+|+|++++...+++.. +|+-
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~-------YFNR 87 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR-------YFNR 87 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-------HHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH-------HHhh
Confidence 36667778999999999999877532221 22 34578889999999999987765421 1111
Q ss_pred HHhcC-ChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy12000 80 SHKLG-DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL 127 (507)
Q Consensus 80 ~~~~~-~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 127 (507)
--.+. +.+.+. +...++.|..+...|+.++|+..|+.+-
T Consensus 88 RGEL~qdeGklW---------IaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 88 RGELHQDEGKLW---------IAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp H--TTSTHHHHH---------HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccccccccchhH---------HHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 11111 122211 1124677888889999999999998864
No 342
>KOG1914|consensus
Probab=87.40 E-value=36 Score=34.62 Aligned_cols=64 Identities=8% Similarity=0.001 Sum_probs=51.7
Q ss_pred ccchhhHHHH-HHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCC
Q psy12000 5 DSLTDAWLGY-CHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPP 68 (507)
Q Consensus 5 ~~~~~~~lg~-~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~ 68 (507)
|-++.-|-.- -..+...+++....|++.+...|..+.+|.......+..++|+..+..|.++..
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444322 233445899999999999999999999999999999999999999999988754
No 343
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.20 E-value=0.91 Score=27.87 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=21.7
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcC
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHL 35 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~ 35 (507)
+++..+|.+....++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667788888888888888888777764
No 344
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.80 E-value=1 Score=34.36 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=40.1
Q ss_pred hHhhHHHHHHHHHHHhhcC-----Cc----hhhhHHHHHhhccccccchhHHHHHHHHHhcC
Q psy12000 405 LRCHYQEAIDIYKRILLDH-----KD----LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 457 (507)
Q Consensus 405 ~~~~~~~Ai~~~~~~l~~~-----p~----~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~ 457 (507)
..++|.+|++.+.+..+.. +. .......+|.++...|++++|+..++.++++-
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3478999988888776422 12 12345678999999999999999999998763
No 345
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.56 E-value=22 Score=31.28 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=12.5
Q ss_pred HHhhccHHHHHHHHHhcCCC
Q psy12000 217 HLKQEEHQEAFDLIKNLEPS 236 (507)
Q Consensus 217 ~~~~~~~~~A~~~l~~~~~~ 236 (507)
+....+|.+.++....+.+.
T Consensus 58 l~~le~Y~kCielAa~Iq~i 77 (203)
T PF11207_consen 58 LEALEKYSKCIELAAQIQHI 77 (203)
T ss_pred HHHHHHHHHHHHHHhcCeee
Confidence 44456677777777666554
No 346
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=86.41 E-value=2.5 Score=40.95 Aligned_cols=85 Identities=14% Similarity=0.052 Sum_probs=66.5
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCC-----------c--h-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000 105 CLASIHFLRCHYQEAIDIYKRILLDHK-----------D--L-----LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 166 (507)
Q Consensus 105 ~la~~~~~~g~~~~A~~~~~~~l~~~p-----------~--~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 166 (507)
.-|...+.+|+|..|+.-|..+|+... . + ..+-..|..||+++++.+-|+...-+.+..+|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 456788889999999888888887642 1 1 123346889999999999999999999999999
Q ss_pred cHHHHHHHhhhhhhccChHHHHH
Q psy12000 167 SRIALNLKACNTYKLFTSRAAEN 189 (507)
Q Consensus 167 ~~~a~~~~a~~~~~~~~~~~A~~ 189 (507)
+..-....|.+...+.++.+|-.
T Consensus 261 ~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 98777777777777777766653
No 347
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.01 E-value=1.4 Score=28.12 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=21.3
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHhc
Q psy12000 9 DAWLGYCHFHLGQYKQALGIYETLRH 34 (507)
Q Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~~l~ 34 (507)
.+.+|.+|..+||++.|.+.+++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 46678888888888888888888884
No 348
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.63 E-value=2.8 Score=38.98 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=52.5
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhC
Q psy12000 10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV 66 (507)
Q Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~ 66 (507)
..++..+...|+++.++..+++++..+|.+...|..+-..|+..|+...|+..|++.
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 346778888999999999999999999999999999999999999999999998865
No 349
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=85.14 E-value=17 Score=29.50 Aligned_cols=51 Identities=16% Similarity=0.051 Sum_probs=34.3
Q ss_pred HhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhc
Q psy12000 406 RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ 456 (507)
Q Consensus 406 ~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~ 456 (507)
+|+-++--+.+..+.+.+.-+|.+.+.+|.+|.++|+..+|.+.++++-+.
T Consensus 99 ~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 99 QGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp TT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 355455555666666555566788889999999999999999999988764
No 350
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=84.82 E-value=1.8 Score=24.87 Aligned_cols=30 Identities=20% Similarity=0.145 Sum_probs=26.0
Q ss_pred cCHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q psy12000 20 GQYKQALGIYETLRHLPNPPEDTEFNIASC 49 (507)
Q Consensus 20 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 49 (507)
|+++.|...|++++...|.++++|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 578899999999999999999999876653
No 351
>KOG1258|consensus
Probab=84.52 E-value=52 Score=33.85 Aligned_cols=61 Identities=7% Similarity=-0.064 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHH-HHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVY-GAMCYYKLDYYDVSQEQVAMYLAQ 163 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~~l~~ 163 (507)
+-..|..-++.|..+.+.++|++.+.--|-+.+.+.. ++.+--..|+.+.=...|+++...
T Consensus 82 W~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~ 143 (577)
T KOG1258|consen 82 WKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSY 143 (577)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 3456677777788888888888888877777666654 333444556666666666666544
No 352
>KOG2396|consensus
Probab=83.59 E-value=10 Score=37.96 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=52.0
Q ss_pred HHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCcHH
Q psy12000 111 FLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY-YDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 111 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~ 169 (507)
-+.+.+.+--.+|.+++..+|+++++|..-|.-.+.-+. .+.|..+|.+.++.+|+++.
T Consensus 116 kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~ 175 (568)
T KOG2396|consen 116 KKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPK 175 (568)
T ss_pred HHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChH
Confidence 344559999999999999999999999998877776665 99999999999999999997
No 353
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=83.54 E-value=1.3 Score=43.57 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=43.7
Q ss_pred HHHHHHhHhhHHHHHHHHHHHhh--------cCCchhhhHHHHHhhccccccchhHHHHHHHHH
Q psy12000 399 LASIHFLRCHYQEAIDIYKRILL--------DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL 454 (507)
Q Consensus 399 l~~~~~~~~~~~~Ai~~~~~~l~--------~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l 454 (507)
+-.+|...|+|..|++.++-+.- ..+-...+++++|.||.-+++|.+|+..|..++
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577788999999998876532 233446788899999999999999999888776
No 354
>PRK11619 lytic murein transglycosylase; Provisional
Probab=83.25 E-value=69 Score=34.23 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=43.6
Q ss_pred HHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000 288 ASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQN 343 (507)
Q Consensus 288 a~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~ 343 (507)
.......++++.+...+..+-........+.|++|.++..+|+.++|...|+++..
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34455788898887777765443345567899999999999999999999999743
No 355
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=83.24 E-value=2.3 Score=26.11 Aligned_cols=28 Identities=7% Similarity=-0.032 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 135 ALNVYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 135 ~~~~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
+++..||.+.+..++|++|++-|++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3556677777777777777777777664
No 356
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=81.83 E-value=1.6 Score=40.52 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=49.8
Q ss_pred HhhHHHHHHHHHHHhhcCCchhhhHHH-HHhhccccccchhHHHHHHHHHhcCCCchhhhh
Q psy12000 406 RCHYQEAIDIYKRILLDHKDLLALNVY-GAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN 465 (507)
Q Consensus 406 ~~~~~~Ai~~~~~~l~~~p~~~~~~~~-la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 465 (507)
.+-|.+--.+|..++..+|.+.+++.. .+.=|+-.++.+-+...+...+..+|++|..+-
T Consensus 120 ~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 120 KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 356777778888999999999987655 455567889999999999999999999998754
No 357
>KOG3783|consensus
Probab=81.77 E-value=49 Score=33.66 Aligned_cols=64 Identities=17% Similarity=0.022 Sum_probs=45.3
Q ss_pred HHHHHhhhhhhccChHHHHHhhHHHHHhhCC--CCCCChhHhHHHHHHHHHhhcc-HHHHHHHHHhc
Q psy12000 170 ALNLKACNTYKLFTSRAAENQLKPILVSILP--PLIDVIPESRLNLVIYHLKQEE-HQEAFDLIKNL 233 (507)
Q Consensus 170 a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~l~~~ 233 (507)
-+.++|+++..+|+...|...+.-..++... ...=..|.+.+.+|..|+.++. ..++...+.+.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kA 517 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKA 517 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence 4667899999999988888877654322111 1112356788999999999888 88888777654
No 358
>KOG2581|consensus
Probab=80.82 E-value=36 Score=33.27 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHhh----cCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCC
Q psy12000 407 CHYQEAIDIYKRILL----DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 459 (507)
Q Consensus 407 ~~~~~Ai~~~~~~l~----~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~ 459 (507)
+.|+.|-+...+..- .+.+.....+++|.+-.-+++|..|.+++-+++.+-|.
T Consensus 223 ~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 223 KLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 445555555554431 11123345556666666666666666666666666665
No 359
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=78.95 E-value=5.4 Score=22.67 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=19.3
Q ss_pred hcHHHHHHHHHHHHHhCCchhHHHHHH
Q psy12000 114 CHYQEAIDIYKRILLDHKDLLALNVYG 140 (507)
Q Consensus 114 g~~~~A~~~~~~~l~~~p~~~~~~~~l 140 (507)
|+.+.|..+|++++...|.++.++...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 456777788888888878777766543
No 360
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.94 E-value=40 Score=31.32 Aligned_cols=161 Identities=12% Similarity=0.129 Sum_probs=83.8
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhhhhcC--------CCchHHHHHHHHHHhhCCHHHHHHHHHhh---cccC--CCchhhh
Q psy12000 286 CMASSFFLLRSFKDVILYLSSIKSYYT--------SDDSFNFNFAQAKCALGQYKEAEEMFLLV---QNEG--LKNDYVY 352 (507)
Q Consensus 286 ~la~~~~~~~~~~~Ai~~~~~~~~~~~--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~~---~~~~--~~~~~~~ 352 (507)
.+|+-..+.+++++|+..+++++.... .......+++..|...|++..--+..... ...- +...-+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 356667788899999998887764321 12355678999999999887654443321 1100 0000111
Q ss_pred hhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHH-HhhhcHHH--HHHHHHHHHhHhhHHHHHHHHHHHhh------cC
Q psy12000 353 ISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQ-KLEDSLEE--QLCLASIHFLRCHYQEAIDIYKRILL------DH 423 (507)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~l~~~~~~--~~~l~~~~~~~~~~~~Ai~~~~~~l~------~~ 423 (507)
...+.+.......++.-+...... +++.. +-...+.. ..-+...++..|+|.+|+.....++. ..
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~------iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK 161 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTAL------IEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDK 161 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCc
Confidence 111111111111111111111110 00000 00000001 12244677788999999998877763 34
Q ss_pred CchhhhHHHHHhhccccccchhHHHHHHH
Q psy12000 424 KDLLALNVYGAMCYYKLDYYDVSQEQVAM 452 (507)
Q Consensus 424 p~~~~~~~~la~~y~~~g~~~~A~~~~~~ 452 (507)
|.-.+++..-.-+|.+..+..++...+-.
T Consensus 162 ~~Li~vhllESKvyh~irnv~KskaSLTa 190 (421)
T COG5159 162 INLITVHLLESKVYHEIRNVSKSKASLTA 190 (421)
T ss_pred cceeehhhhhHHHHHHHHhhhhhhhHHHH
Confidence 55667777777788888888887765543
No 361
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=78.76 E-value=35 Score=27.95 Aligned_cols=89 Identities=13% Similarity=0.098 Sum_probs=51.3
Q ss_pred HHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhh
Q psy12000 288 ASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTR 367 (507)
Q Consensus 288 a~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 367 (507)
-..+...+.....+.+++.+...++.++.....+..+|.+. +..+.++.+..- ....+...+ +..| ...+-++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~~-~~~yd~~~~----~~~c-~~~~l~~ 86 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDNK-SNHYDIEKV----GKLC-EKAKLYE 86 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHhc-cccCCHHHH----HHHH-HHcCcHH
Confidence 34455667899999999988777666666666677777755 456677777631 111111000 1112 2234455
Q ss_pred HHHHHHHHcCCcHHHH
Q psy12000 368 LSFHLSHKLGDEKSLM 383 (507)
Q Consensus 368 ~A~~~~~~~~~~~~~~ 383 (507)
.+..++.+.+...+++
T Consensus 87 ~~~~l~~k~~~~~~Al 102 (140)
T smart00299 87 EAVELYKKDGNFKDAI 102 (140)
T ss_pred HHHHHHHhhcCHHHHH
Confidence 6666666666655544
No 362
>KOG1839|consensus
Probab=77.41 E-value=23 Score=39.87 Aligned_cols=131 Identities=16% Similarity=0.077 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhhcHHHHHH------HHHH-HHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hc-CCCc
Q psy12000 103 QLCLASIHFLRCHYQEAID------IYKR-ILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL-------AQ-KPTS 167 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~------~~~~-~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-------~~-~p~~ 167 (507)
....|......|.+.+|.+ .+.. .-...|+....+..++.++..+|++++|+..-.++. .. .|+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 4456666667778887777 6653 344578889999999999999999999999876653 22 3444
Q ss_pred HHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCCh---hHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000 168 RIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVI---PESRLNLVIYHLKQEEHQEAFDLIKNL 233 (507)
Q Consensus 168 ~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~l~~~ 233 (507)
...+..++...+..++...|...+............+.. .....++..++...++++.|++.++..
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A 1083 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESA 1083 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 445555565556555555555555443221111122222 234456777777778888888777654
No 363
>KOG1310|consensus
Probab=77.37 E-value=9.3 Score=38.41 Aligned_cols=55 Identities=13% Similarity=-0.098 Sum_probs=41.0
Q ss_pred hcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 114 CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 114 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
|+.-.|+.-...++..+|....+++.|+.+...++++.+|++....+...+|.+.
T Consensus 425 ~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 425 GDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred ccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 3444556666667778888888888888888888888888888877777777554
No 364
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.04 E-value=9.6 Score=35.36 Aligned_cols=55 Identities=16% Similarity=-0.065 Sum_probs=40.3
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12000 106 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY 160 (507)
Q Consensus 106 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 160 (507)
.+..|...|.+.+|+++.++++..+|-+...+..+-.++..+|+--.|.+.++++
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4556666777888888888888888877777777777777777777776666654
No 365
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.87 E-value=14 Score=32.78 Aligned_cols=61 Identities=8% Similarity=0.007 Sum_probs=55.1
Q ss_pred HHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 109 IHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 109 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
-+.+.+..++|+...++-++..|.+...+..+=.++.-.|+|++|...++-+-...|++..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 4456788899999999999999999999988999999999999999999999999998875
No 366
>KOG1839|consensus
Probab=75.09 E-value=34 Score=38.55 Aligned_cols=134 Identities=13% Similarity=-0.013 Sum_probs=89.3
Q ss_pred HHHHHHHhhcCHHHHHH------HHH-HHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhc
Q psy12000 11 WLGYCHFHLGQYKQALG------IYE-TLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKL 83 (507)
Q Consensus 11 ~lg~~~~~~g~~~~A~~------~~~-~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~ 83 (507)
.-|......|.+.+|.+ .+. ......|.....+..++.++..+|++++|+....++.-..... . ..
T Consensus 937 e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~--~-----g~ 1009 (1236)
T KOG1839|consen 937 EQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERV--L-----GK 1009 (1236)
T ss_pred hhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechh--c-----cC
Confidence 35666777788887777 665 3345578888899999999999999999999877763210000 0 00
Q ss_pred CChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------CCchhHHHHHHHHHHHhcCCHHHHHH
Q psy12000 84 GDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD--------HKDLLALNVYGAMCYYKLDYYDVSQE 155 (507)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~ 155 (507)
...+.. ..+.+++...+..+....|...+.++... .|....+..+++.++...++++.|++
T Consensus 1010 ds~~t~-----------~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~ 1078 (1236)
T KOG1839|consen 1010 DSPNTK-----------LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALR 1078 (1236)
T ss_pred CCHHHH-----------HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHH
Confidence 000000 01345555666666777777777666543 34444556778888889999999999
Q ss_pred HHHHHHh
Q psy12000 156 QVAMYLA 162 (507)
Q Consensus 156 ~~~~~l~ 162 (507)
+++.++.
T Consensus 1079 ~le~A~a 1085 (1236)
T KOG1839|consen 1079 YLESALA 1085 (1236)
T ss_pred HHHHHHH
Confidence 9998876
No 367
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.30 E-value=8.6 Score=35.64 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=48.6
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEK 65 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 65 (507)
.+..|...|.+.+|+++.++++..+|-+...+..+-.++..+|+--+|++-+++
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 477788999999999999999999999999999999999999998888877665
No 368
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=74.27 E-value=8.2 Score=27.87 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHhcCCCchhhhhH
Q psy12000 444 DVSQEQVAMYLAQKPTSRIALNL 466 (507)
Q Consensus 444 ~~A~~~~~~~l~~~P~~~~a~~~ 466 (507)
.+|++.+.+++...||++.....
T Consensus 30 ~~aIe~L~q~~~~~pD~~~k~~y 52 (75)
T cd02682 30 KKAIEVLSQIVKNYPDSPTRLIY 52 (75)
T ss_pred HHHHHHHHHHHHhCCChHHHHHH
Confidence 34455555666778888875443
No 369
>PF12854 PPR_1: PPR repeat
Probab=72.87 E-value=7.6 Score=22.98 Aligned_cols=25 Identities=16% Similarity=-0.121 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12000 135 ALNVYGAMCYYKLDYYDVSQEQVAM 159 (507)
Q Consensus 135 ~~~~~la~~~~~~g~~~~A~~~~~~ 159 (507)
..+..+-..+.+.|+.++|.++|++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3455666778888888888887765
No 370
>KOG2114|consensus
Probab=71.77 E-value=33 Score=36.77 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=31.1
Q ss_pred HHHHHhhcCHHHHHHHHHHhhhhcCCC-chHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000 288 ASSFFLLRSFKDVILYLSSIKSYYTSD-DSFNFNFAQAKCALGQYKEAEEMFLLVQ 342 (507)
Q Consensus 288 a~~~~~~~~~~~Ai~~~~~~~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~~~ 342 (507)
-.++++++-|+-|+.+-+.-- .+++. .......|.-++.+|++++|...|-+.+
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI 395 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI 395 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 355666677777776544321 11111 2344456777777777777777776655
No 371
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=71.54 E-value=7.1 Score=21.92 Aligned_cols=25 Identities=12% Similarity=0.028 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 138 VYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 138 ~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
..+-.+|.+.|++++|.+.++++.+
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhH
Confidence 3444566666666666666666543
No 372
>PF13041 PPR_2: PPR repeat family
Probab=71.34 E-value=19 Score=23.31 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=12.3
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHh
Q psy12000 106 LASIHFLRCHYQEAIDIYKRILLD 129 (507)
Q Consensus 106 la~~~~~~g~~~~A~~~~~~~l~~ 129 (507)
+-..+.+.|++++|.++|+++.+.
T Consensus 9 li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 9 LISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHc
Confidence 334445555555555555555544
No 373
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=71.03 E-value=15 Score=33.79 Aligned_cols=54 Identities=15% Similarity=0.080 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCCc------hhHHHHHHHHHHHhcCCHHHHHHHH
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRILLDHKD------LLALNVYGAMCYYKLDYYDVSQEQV 157 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~ 157 (507)
..+|..|+..|+|++|+++|+.+...... ...+...+..|+..+|+.+..+.+.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34566666666666666666666443321 1234445556666666665555543
No 374
>KOG1310|consensus
Probab=70.39 E-value=22 Score=35.93 Aligned_cols=80 Identities=16% Similarity=0.034 Sum_probs=38.8
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 106 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYY---DVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 106 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
-|.--+-.+....|+..|.+++...|+....+-+.|.++++.+-. =.|+.-.-.++..+|....++..++..+..++
T Consensus 380 egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~ 459 (758)
T KOG1310|consen 380 EGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELT 459 (758)
T ss_pred hccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh
Confidence 333333444556666677776666666666666666665554322 22333333334444444444333333333333
Q ss_pred ChH
Q psy12000 183 TSR 185 (507)
Q Consensus 183 ~~~ 185 (507)
++.
T Consensus 460 r~~ 462 (758)
T KOG1310|consen 460 RYL 462 (758)
T ss_pred hHH
Confidence 333
No 375
>PF12854 PPR_1: PPR repeat
Probab=68.77 E-value=10 Score=22.36 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=14.2
Q ss_pred HHHHHHHHhhCCHHHHHHHHHh
Q psy12000 319 FNFAQAKCALGQYKEAEEMFLL 340 (507)
Q Consensus 319 ~~lg~~~~~~g~~~~A~~~~~~ 340 (507)
..+-..|.+.|+.++|.+.|++
T Consensus 11 ~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 11 NTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHh
Confidence 3356666677777777766654
No 376
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=68.73 E-value=17 Score=30.04 Aligned_cols=47 Identities=19% Similarity=0.168 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY 149 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 149 (507)
.+..+.-.+..|+|.-|.++...++..+|++..+....+.++.++|.
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 56677778888888889888888888888888888888887777664
No 377
>PF13041 PPR_2: PPR repeat family
Probab=68.60 E-value=9.9 Score=24.67 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=13.7
Q ss_pred HHHHHHhhCCHHHHHHHHHhhcc
Q psy12000 321 FAQAKCALGQYKEAEEMFLLVQN 343 (507)
Q Consensus 321 lg~~~~~~g~~~~A~~~~~~~~~ 343 (507)
+-..+.+.|++++|.+.|+++.+
T Consensus 9 li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 9 LISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHH
Confidence 44556666666666666666553
No 378
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=68.31 E-value=12 Score=34.38 Aligned_cols=26 Identities=35% Similarity=0.485 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHhC
Q psy12000 41 DTEFNIASCYFYLGMYLQANQILEKV 66 (507)
Q Consensus 41 ~~~~~la~~~~~~g~~~eA~~~~~~~ 66 (507)
.+...+|.-|+..|++++|...++.+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44555555555555555555555554
No 379
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=68.20 E-value=1.4e+02 Score=30.33 Aligned_cols=135 Identities=17% Similarity=0.080 Sum_probs=73.2
Q ss_pred cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccc---c----chHHH
Q psy12000 6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAK---T----RLSFH 78 (507)
Q Consensus 6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~---~----~~~~~ 78 (507)
...++.++.||.+.| .++=....+++.+.+=++...---++..|- .++-+.+..+|.++..+-.. + .++-.
T Consensus 99 kmal~el~q~y~en~-n~~l~~lWer~ve~dfnDvv~~ReLa~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeK 176 (711)
T COG1747 99 KMALLELLQCYKENG-NEQLYSLWERLVEYDFNDVVIGRELADKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEK 176 (711)
T ss_pred HHHHHHHHHHHHhcC-chhhHHHHHHHHHhcchhHHHHHHHHHHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHH
Confidence 345566777777763 355566666666666655544444555444 48888888888776431111 1 12322
Q ss_pred HHHhcCCh-hHHHHHHHHHhhcH-HH----HHH-HHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHH
Q psy12000 79 LSHKLGDE-KSLMEYHQKLEDSL-EE----QLC-LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAM 142 (507)
Q Consensus 79 ~~~~~~~~-~~~~~~~~~l~~~~-~~----~~~-la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 142 (507)
+-...++. +........++... +. .+. +-.-|-...++++|+.+...+++.+..+..++-++-.
T Consensus 177 L~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~ 247 (711)
T COG1747 177 LPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIE 247 (711)
T ss_pred HHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHH
Confidence 22222222 22222233333211 11 111 1123445789999999999999988877776655543
No 380
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.65 E-value=63 Score=31.95 Aligned_cols=57 Identities=19% Similarity=-0.035 Sum_probs=41.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCCChh--hHHH--HHHHHHhhccHHHHHHHHHhCCC
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNPPED--TEFN--IASCYFYLGMYLQANQILEKVPP 68 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~--la~~~~~~g~~~eA~~~~~~~~~ 68 (507)
.+...+..++|..|.+.++.+.+.-|.... .+.. .|..+.-..++++|.+.+++...
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 577888999999999999999886333333 3333 34445567889999999887653
No 381
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.48 E-value=1.2e+02 Score=29.11 Aligned_cols=110 Identities=13% Similarity=0.093 Sum_probs=59.6
Q ss_pred hhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHH
Q psy12000 219 KQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFK 298 (507)
Q Consensus 219 ~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 298 (507)
..|.|+++.+.+.+-.. ..-.-+..|.++...++.......++.|++-|+.-.+.... ...+--..|.+.
T Consensus 40 ~~~~y~Q~~q~~kk~~~-~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~--S~~~A~~vGst~------- 109 (449)
T COG3014 40 PKKAYEQSKQFTKKKKN-ALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSA--STRGAGYVGATM------- 109 (449)
T ss_pred chhHHHHHHHhhhhhhH-HHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhhee--ccccccchhhhh-------
Confidence 35566666665543211 00012235777777888777777777777766542221110 000000122222
Q ss_pred HHHHHHHHhhhhcCCC---chHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000 299 DVILYLSSIKSYYTSD---DSFNFNFAQAKCALGQYKEAEEMFLLVQ 342 (507)
Q Consensus 299 ~Ai~~~~~~~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~~ 342 (507)
+-+.+...+|.. ..+++.+|.-|+...+++.|.--|.++.
T Consensus 110 ----vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan 152 (449)
T COG3014 110 ----INDNVRAYGGNIYEGVLINYYKALNYMLLNDSAKARVEFNRAN 152 (449)
T ss_pred ----hccchhhcCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHH
Confidence 222233333332 2345668999999999999999998875
No 382
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=67.43 E-value=35 Score=27.79 Aligned_cols=61 Identities=18% Similarity=0.050 Sum_probs=42.9
Q ss_pred HHHHHH-HHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000 103 QLCLAS-IHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ 163 (507)
Q Consensus 103 ~~~la~-~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 163 (507)
+..+|. +...+|+-++--++++.+...+..++++...+|.+|-+.|+..+|.+++.++-+.
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 444443 5567888888888888888766678899999999999999999999999887643
No 383
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=67.06 E-value=8.8 Score=31.75 Aligned_cols=52 Identities=15% Similarity=0.070 Sum_probs=40.8
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHH
Q psy12000 8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQA 59 (507)
Q Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA 59 (507)
.-+..+...+..|+|.-|..+.+.++..+|++.++...++.++.++|.-.+.
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 3445678889999999999999999999999999999999998887765543
No 384
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=66.23 E-value=11 Score=35.18 Aligned_cols=26 Identities=4% Similarity=-0.077 Sum_probs=17.6
Q ss_pred hHhhHHHHHHHHHHHhhcCCchhhhH
Q psy12000 405 LRCHYQEAIDIYKRILLDHKDLLALN 430 (507)
Q Consensus 405 ~~~~~~~Ai~~~~~~l~~~p~~~~~~ 430 (507)
..++++.+...|.+++..+|++|.++
T Consensus 154 ~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 154 EIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred hhccHHHHHHHHHhhhccCCCCchHH
Confidence 34667777777777777777776654
No 385
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=66.05 E-value=38 Score=24.49 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILL 128 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~ 128 (507)
+...|.-+-+.|++.+|+.+|+++++
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455566677887777777766553
No 386
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=66.05 E-value=1e+02 Score=31.84 Aligned_cols=107 Identities=12% Similarity=-0.119 Sum_probs=60.4
Q ss_pred HHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhC-CCCccccc-hHHHHHHhcCChhHHHHHH
Q psy12000 16 HFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV-PPSRAKTR-LSFHLSHKLGDEKSLMEYH 93 (507)
Q Consensus 16 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 93 (507)
+...++...|+-....++..+|.+..+..+++.+....|..-.+...+... ....+.+. .+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------------- 141 (620)
T COG3914 77 LAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGH--------------- 141 (620)
T ss_pred ccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhh---------------
Confidence 334455555555556666666666666666666555555555555444331 11111110 0000
Q ss_pred HHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q psy12000 94 QKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMC 143 (507)
Q Consensus 94 ~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 143 (507)
...++.++......|+..++.....++....|.++.+...+...
T Consensus 142 ------~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 142 ------LIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred ------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 01134467777888888889888889888888887665544443
No 387
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=65.61 E-value=8.8 Score=27.74 Aligned_cols=17 Identities=6% Similarity=-0.101 Sum_probs=9.3
Q ss_pred ccccchhHHHHHHHHHh
Q psy12000 439 KLDYYDVSQEQVAMYLA 455 (507)
Q Consensus 439 ~~g~~~~A~~~~~~~l~ 455 (507)
..|++++|+..|.++++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 34555555555555554
No 388
>KOG2063|consensus
Probab=64.44 E-value=2.3e+02 Score=31.32 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHhhCCHHHHHHHHHhhccc
Q psy12000 315 DSFNFNFAQAKCALGQYKEAEEMFLLVQNE 344 (507)
Q Consensus 315 ~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~ 344 (507)
..++...+..+.+.|+.++|+..|...+..
T Consensus 684 ~~l~ee~aill~rl~khe~aL~Iyv~~L~d 713 (877)
T KOG2063|consen 684 DELYEERAILLGRLGKHEEALHIYVHELDD 713 (877)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence 345666788888899999999998877653
No 389
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=63.96 E-value=54 Score=29.90 Aligned_cols=57 Identities=9% Similarity=0.088 Sum_probs=39.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhhhhcCCCc-hHHHHHHHHHHh-hCCHHHHHHHHHhhc
Q psy12000 286 CMASSFFLLRSFKDVILYLSSIKSYYTSDD-SFNFNFAQAKCA-LGQYKEAEEMFLLVQ 342 (507)
Q Consensus 286 ~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~-~~~~~lg~~~~~-~g~~~~A~~~~~~~~ 342 (507)
.+|.+....++|++.+.+++++...+++-. .=...++.+|-. .|..-.+...+..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 578889999999999999999887765432 223336666644 466677777776554
No 390
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.55 E-value=1.4e+02 Score=29.47 Aligned_cols=61 Identities=15% Similarity=-0.038 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh--HHHHHHHH--HHHhcCCHHHHHHHHHHHHhc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL--ALNVYGAM--CYYKLDYYDVSQEQVAMYLAQ 163 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~la~--~~~~~g~~~~A~~~~~~~l~~ 163 (507)
....+.-.+..++|..|.++|..+...-|+.. ..+..++. -+...-++.+|.+.++.++..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45677788899999999999999998634433 34555544 446788999999999998765
No 391
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=60.35 E-value=1.4e+02 Score=27.31 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch-hHHHHHHHHHHH-hcCCHHHHHHHHHHHHhc
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDL-LALNVYGAMCYY-KLDYYDVSQEQVAMYLAQ 163 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~ 163 (507)
++..+|.+..+.|+|++.+.+.++++..+|+- .+=+..++.+|- ..|..-.+...+..+...
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 35678999999999999999999999998752 333444555553 356666666666665543
No 392
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=59.91 E-value=19 Score=20.50 Aligned_cols=25 Identities=12% Similarity=-0.154 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 138 VYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 138 ~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
..+-.+|.+.|++++|.++|+++..
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445567777778888777777654
No 393
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=59.85 E-value=1.1e+02 Score=30.48 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=27.9
Q ss_pred CCchhHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12000 130 HKDLLALNVYGAM-CYYKLDYYDVSQEQVAMYLAQKPTSRIA 170 (507)
Q Consensus 130 ~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~l~~~p~~~~a 170 (507)
.|.+...-...|+ ..++.++|-.|-...+++|+..|....+
T Consensus 295 Qp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a 336 (422)
T PF06957_consen 295 QPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVA 336 (422)
T ss_dssp -HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHH
T ss_pred cHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence 3444444444444 5678999999999999999999887653
No 394
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=59.44 E-value=31 Score=24.91 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=5.3
Q ss_pred HHHHHHHHHHh
Q psy12000 410 QEAIDIYKRIL 420 (507)
Q Consensus 410 ~~Ai~~~~~~l 420 (507)
++|+.++++++
T Consensus 4 ~~Ai~lv~~Av 14 (75)
T cd02684 4 EKAIALVVQAV 14 (75)
T ss_pred HHHHHHHHHHH
Confidence 34455555543
No 395
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=59.06 E-value=33 Score=31.96 Aligned_cols=44 Identities=11% Similarity=-0.266 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 119 AIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 119 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
|+.+|.+++...|++...++.+|.++...|+.=.|+-+|-+.+-
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~ 44 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLA 44 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHS
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHh
Confidence 67899999999999999999999999999999888888877764
No 396
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.03 E-value=23 Score=31.13 Aligned_cols=51 Identities=16% Similarity=0.070 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCC
Q psy12000 408 HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 459 (507)
Q Consensus 408 ~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~ 459 (507)
..+..++..++.+...|+ +.++..++.++...|+.++|....+++...+|.
T Consensus 126 ~l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345666777888888885 556667789999999999999999999999993
No 397
>KOG2581|consensus
Probab=57.96 E-value=2e+02 Score=28.44 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL 134 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 134 (507)
.+.+|.+...+++|..|.++|-+++...|.+.
T Consensus 250 ~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 250 LYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 45688888899999999999999998888743
No 398
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=57.23 E-value=51 Score=32.47 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=49.5
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12000 105 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAM 159 (507)
Q Consensus 105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 159 (507)
.+..+|...++.+-|+..-.+.|..+|.+..-+..-|.|+-.+.+|.+|-..+--
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSami 287 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMI 287 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999999999999999998888899999999999999776543
No 399
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.00 E-value=45 Score=25.52 Aligned_cols=51 Identities=10% Similarity=-0.003 Sum_probs=39.9
Q ss_pred HHHHHhhc-CCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhh
Q psy12000 415 IYKRILLD-HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN 465 (507)
Q Consensus 415 ~~~~~l~~-~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 465 (507)
.++++-.. -|--|-++..+|+.|.+.|+.|.|+..|+.==.++|++.....
T Consensus 59 ~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmD 110 (121)
T COG4259 59 YLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMD 110 (121)
T ss_pred HHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHH
Confidence 44555433 3444567888999999999999999999999999999987543
No 400
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=54.84 E-value=31 Score=19.66 Aligned_cols=26 Identities=8% Similarity=-0.243 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 137 NVYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 137 ~~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
+..+-.++.+.|+++.|..+|+...+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455666677777777777766543
No 401
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=54.83 E-value=19 Score=25.35 Aligned_cols=13 Identities=38% Similarity=0.861 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHHH
Q psy12000 407 CHYQEAIDIYKRI 419 (507)
Q Consensus 407 ~~~~~Ai~~~~~~ 419 (507)
|+|++|+.+|+++
T Consensus 19 g~~~~A~~~Y~~a 31 (69)
T PF04212_consen 19 GNYEEALELYKEA 31 (69)
T ss_dssp TSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3444444444433
No 402
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=54.67 E-value=2e+02 Score=27.59 Aligned_cols=86 Identities=13% Similarity=0.038 Sum_probs=48.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchh
Q psy12000 286 CMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAK 365 (507)
Q Consensus 286 ~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 365 (507)
....++...++|++=..+.+. + ..|.-+--...+....|...+|..+..++.. + . -...|.+.|.
T Consensus 213 lki~aLa~~~~w~eL~~fa~s-k----KsPIGyepFv~~~~~~~~~~eA~~yI~k~~~-~-~--------rv~~y~~~~~ 277 (319)
T PF04840_consen 213 LKIKALAENKDWDELEKFAKS-K----KSPIGYEPFVEACLKYGNKKEASKYIPKIPD-E-E--------RVEMYLKCGD 277 (319)
T ss_pred HHHHHHHhcCCHHHHHHHHhC-C----CCCCChHHHHHHHHHCCCHHHHHHHHHhCCh-H-H--------HHHHHHHCCC
Confidence 345677788888765554332 2 1222222345566677888888888877422 1 1 1223455677
Q ss_pred hhHHHHHHHHcCCcHHHHHHH
Q psy12000 366 TRLSFHLSHKLGDEKSLMEYH 386 (507)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~~~~ 386 (507)
+..|.+.+.+..+.+....+.
T Consensus 278 ~~~A~~~A~~~kd~~~L~~i~ 298 (319)
T PF04840_consen 278 YKEAAQEAFKEKDIDLLKQIL 298 (319)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 777777766666555443333
No 403
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=54.41 E-value=42 Score=32.96 Aligned_cols=49 Identities=16% Similarity=0.068 Sum_probs=44.5
Q ss_pred hcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCC
Q psy12000 19 LGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVP 67 (507)
Q Consensus 19 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~ 67 (507)
.+..-+|+.+++.++...|.+......+.++|..+|-...|...+....
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~ 244 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLD 244 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcC
Confidence 5567789999999999999999999999999999999999999997653
No 404
>KOG1497|consensus
Probab=52.93 E-value=2.1e+02 Score=27.26 Aligned_cols=90 Identities=14% Similarity=0.003 Sum_probs=58.2
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHhhhhc-CCC------chHHHHHHHHHHhhCCHHHHHHHHHhh--cccCCCchh---
Q psy12000 283 GRQCMASSFFLLRSFKDVILYLSSIKSYY-TSD------DSFNFNFAQAKCALGQYKEAEEMFLLV--QNEGLKNDY--- 350 (507)
Q Consensus 283 ~~~~la~~~~~~~~~~~Ai~~~~~~~~~~-~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~--~~~~~~~~~--- 350 (507)
.+..||.+|.+.++|..|...+..+-... +.. -.....+|.+|.+.++..+|..+..++ +-.+..+..
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqi 184 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQI 184 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHH
Confidence 45679999999999999999877654322 211 133455799999999999999999875 222222222
Q ss_pred hhhhhhcccCccchhhhHHHHH
Q psy12000 351 VYISHLTKCSPSRAKTRLSFHL 372 (507)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~A~~~ 372 (507)
.|..+.++++-..+++-+|-..
T Consensus 185 e~kvc~ARvlD~krkFlEAAqr 206 (399)
T KOG1497|consen 185 EYKVCYARVLDYKRKFLEAAQR 206 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2223335555556677666443
No 405
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=51.29 E-value=21 Score=25.89 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHHh
Q psy12000 407 CHYQEAIDIYKRIL 420 (507)
Q Consensus 407 ~~~~~Ai~~~~~~l 420 (507)
|+|++|+.+|+.++
T Consensus 20 g~y~eA~~~Y~~ai 33 (76)
T cd02681 20 GRYSEAVFYYKEAA 33 (76)
T ss_pred cCHHHHHHHHHHHH
Confidence 44555554444443
No 406
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.71 E-value=66 Score=28.15 Aligned_cols=54 Identities=15% Similarity=0.053 Sum_probs=43.3
Q ss_pred hcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 114 CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 114 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
+..+..++..++.+...|+ +.++.+++.++...|+.++|.....++....|.+.
T Consensus 125 ~~l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHH
Confidence 3445566777778888885 56777889999999999999999999999999443
No 407
>KOG1920|consensus
Probab=50.67 E-value=4.3e+02 Score=30.15 Aligned_cols=266 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHhcC--CHHHHHHHHHHHH--hcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHH
Q psy12000 121 DIYKRILLDHKDLLALNVYGAMCYYKLD--YYDVSQEQVAMYL--AQKPTSRIALNLKACNTYKLFTSRAAENQLKPILV 196 (507)
Q Consensus 121 ~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l--~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~ 196 (507)
+..++++...+.+ .....|-..|.+.+ ..++|+....+.. ...+.-..++..+..+-=-.--++-|...+
T Consensus 778 ~~vr~~l~~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn~lfn~ALgtY----- 851 (1265)
T KOG1920|consen 778 DAVRNALERRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVNELFNSALGTY----- 851 (1265)
T ss_pred HHHHHHHhhcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHHHHHHhhhccc-----
Q ss_pred hhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHH-HHHHhCCCc
Q psy12000 197 SILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQA-LFQLVGSSQ 275 (507)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~-~~~~~~~~~ 275 (507)
+.-+.+-.+...+.+..+=+-.+.++. .-.....+-.+-..+++...+..++...-. +|....
T Consensus 852 -----------Dl~Lal~VAq~SqkDPkEyLP~L~el~--~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~--- 915 (1265)
T KOG1920|consen 852 -----------DLDLALLVAQKSQKDPKEYLPFLNELK--KMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECK--- 915 (1265)
T ss_pred -----------chHHHHHHHHHhccChHHHHHHHHHHh--hchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHH---
Q ss_pred ccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhh
Q psy12000 276 SECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISH 355 (507)
Q Consensus 276 ~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 355 (507)
..-.+.|-|++|+.+++--.+. ....+...|.-+...+++++|.-+|+++
T Consensus 916 -------------n~I~kh~Ly~~aL~ly~~~~e~---~k~i~~~ya~hL~~~~~~~~Aal~Ye~~-------------- 965 (1265)
T KOG1920|consen 916 -------------NYIKKHGLYDEALALYKPDSEK---QKVIYEAYADHLREELMSDEAALMYERC-------------- 965 (1265)
T ss_pred -------------HHHHhcccchhhhheeccCHHH---HHHHHHHHHHHHHHhccccHHHHHHHHh--------------
Q ss_pred hcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhc----HHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHH
Q psy12000 356 LTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDS----LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNV 431 (507)
Q Consensus 356 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~ 431 (507)
|+.++|...|...++-.+++.....+... ..-...|.......+++-+|-++.+..+.....-...
T Consensus 966 --------GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~l-- 1035 (1265)
T KOG1920|consen 966 --------GKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVAL-- 1035 (1265)
T ss_pred --------ccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHH--
Q ss_pred HHHhhccccccchhHHHHHHHH
Q psy12000 432 YGAMCYYKLDYYDVSQEQVAMY 453 (507)
Q Consensus 432 ~la~~y~~~g~~~~A~~~~~~~ 453 (507)
|.+-..|++|+..-...
T Consensus 1036 -----l~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1036 -----LCKAKEWEEALRVASKA 1052 (1265)
T ss_pred -----HhhHhHHHHHHHHHHhc
No 408
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=50.55 E-value=26 Score=25.63 Aligned_cols=34 Identities=12% Similarity=0.024 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHh
Q psy12000 407 CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA 455 (507)
Q Consensus 407 ~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~ 455 (507)
+.|+.|..+..+++. +...|..++|+..|+++++
T Consensus 3 ~~~~~A~~~I~kaL~---------------~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 3 GYYKQAFEEISKALR---------------ADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred hHHHHHHHHHHHHhh---------------hhhcCCHHHHHHHHHHHHH
Confidence 345666666655554 2234555555555555543
No 409
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=50.46 E-value=56 Score=29.21 Aligned_cols=56 Identities=9% Similarity=-0.022 Sum_probs=48.8
Q ss_pred HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCC
Q psy12000 13 GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPP 68 (507)
Q Consensus 13 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~ 68 (507)
..-+...+...+|+...+.-++.+|.+......+-.++.-.|+|++|..-++-+..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 34567788999999999999999999999999999999999999999987776543
No 410
>KOG0276|consensus
Probab=49.05 E-value=2.2e+02 Score=29.72 Aligned_cols=45 Identities=7% Similarity=-0.176 Sum_probs=26.9
Q ss_pred HHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12000 111 FLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY 160 (507)
Q Consensus 111 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 160 (507)
.+.|+++.|.++-.+ .++..=+-.||...+..|++..|.+.|.++
T Consensus 648 l~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 345666666554333 233344556677777777777777776665
No 411
>KOG1463|consensus
Probab=48.70 E-value=2.6e+02 Score=27.00 Aligned_cols=56 Identities=7% Similarity=0.063 Sum_probs=41.9
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhcC--CCCCh--------hhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000 10 AWLGYCHFHLGQYKQALGIYETLRHL--PNPPE--------DTEFNIASCYFYLGMYLQANQILEK 65 (507)
Q Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~--------~~~~~la~~~~~~g~~~eA~~~~~~ 65 (507)
++.+.......++++++..|..++.. .|.+. ..-..+|..+.+.|+.++-......
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~ 73 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITS 73 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 66777777788899999999999874 23322 2456789999999998887766554
No 412
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=48.58 E-value=36 Score=23.97 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHH
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRILL 128 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l~ 128 (507)
...|.-.-..|++++|+.+|.+++.
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4456666677788888777777653
No 413
>KOG2422|consensus
Probab=48.27 E-value=3.4e+02 Score=28.25 Aligned_cols=140 Identities=15% Similarity=0.080 Sum_probs=69.3
Q ss_pred CCChhHhHHHHHHHHHhhccHHHHHHHHHhc--------CCC-------------ChHHHHHHHHHHHHhhhccCcHHHH
Q psy12000 203 IDVIPESRLNLVIYHLKQEEHQEAFDLIKNL--------EPS-------------VPQEYILKAVVQVTIGQDTGSREMV 261 (507)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~--------~~~-------------~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (507)
.|.+.+..+.++.+...+|+.+.|.+++.+. .|. .|...... .+....-+.....+..
T Consensus 280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~Fy-L~l~r~m~~l~~RGC~ 358 (665)
T KOG2422|consen 280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFY-LALFRYMQSLAQRGCW 358 (665)
T ss_pred CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHH-HHHHHHHHHHHhcCCh
Confidence 4556666777777777777777776655431 111 11111100 0011111112234566
Q ss_pred HHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcC--CCchHHHH--HHHHHHhhCC---HHHH
Q psy12000 262 KAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYT--SDDSFNFN--FAQAKCALGQ---YKEA 334 (507)
Q Consensus 262 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~--~~~~~~~~--lg~~~~~~g~---~~~A 334 (507)
..|.++-+.+...+...|.+-...++-....+.++|.--|++++....... ..|.+.|. +|..|..... -..|
T Consensus 359 rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa 438 (665)
T KOG2422|consen 359 RTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSA 438 (665)
T ss_pred HHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHH
Confidence 777777666554444434444444444445567788888877766532221 11223344 4445555444 3456
Q ss_pred HHHHHhhcc
Q psy12000 335 EEMFLLVQN 343 (507)
Q Consensus 335 ~~~~~~~~~ 343 (507)
...+.+++.
T Consensus 439 ~~~l~qAl~ 447 (665)
T KOG2422|consen 439 LNALLQALK 447 (665)
T ss_pred HHHHHHHHH
Confidence 666666653
No 414
>KOG0276|consensus
Probab=47.36 E-value=2.4e+02 Score=29.47 Aligned_cols=77 Identities=16% Similarity=0.030 Sum_probs=44.2
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000 9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS 88 (507)
Q Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (507)
+-.+++.+-.+|-.++| |+..|+. + ..-.+..+.|+++.|...+.++.+.
T Consensus 617 rt~va~Fle~~g~~e~A-------L~~s~D~-d---~rFelal~lgrl~iA~~la~e~~s~------------------- 666 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQA-------LELSTDP-D---QRFELALKLGRLDIAFDLAVEANSE------------------- 666 (794)
T ss_pred hhhHHhHhhhccchHhh-------hhcCCCh-h---hhhhhhhhcCcHHHHHHHHHhhcch-------------------
Confidence 33455555555555544 4444443 2 2334456788888888876655321
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy12000 89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL 127 (507)
Q Consensus 89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 127 (507)
..+-.||.+....|++..|.++|.++-
T Consensus 667 ------------~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 667 ------------VKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred ------------HHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 113456666677777777777776653
No 415
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=47.21 E-value=90 Score=25.28 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=22.3
Q ss_pred HHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHH
Q psy12000 109 IHFLRCHYQEAIDIYKRILLDHKDLLALNVYGA 141 (507)
Q Consensus 109 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 141 (507)
.+...-+.+.|..+|++++..+|++..++..+-
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i 117 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPDHLPAHLAMI 117 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence 334455668889999999999999888776543
No 416
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=46.72 E-value=55 Score=33.67 Aligned_cols=52 Identities=10% Similarity=-0.160 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCCchhhhHHHH------HhhccccccchhHHHHHHHHHhcCCCchhh
Q psy12000 412 AIDIYKRILLDHKDLLALNVYG------AMCYYKLDYYDVSQEQVAMYLAQKPTSRIA 463 (507)
Q Consensus 412 Ai~~~~~~l~~~p~~~~~~~~l------a~~y~~~g~~~~A~~~~~~~l~~~P~~~~a 463 (507)
++..-+.+....|++......+ |.....+|+..++...+..+....|.++.+
T Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~ 178 (620)
T COG3914 121 LADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRV 178 (620)
T ss_pred HHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhh
Confidence 3333444666666666554444 444555556666666666666666666554
No 417
>KOG0546|consensus
Probab=45.28 E-value=13 Score=35.52 Aligned_cols=71 Identities=14% Similarity=-0.022 Sum_probs=58.7
Q ss_pred hHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcC
Q psy12000 405 LRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 475 (507)
Q Consensus 405 ~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~ 475 (507)
..+.+..|+-.-..++..+|.....++..+..+..+.++++|++.+..+.+..|++......+..+.-..+
T Consensus 287 k~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~ 357 (372)
T KOG0546|consen 287 KVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKK 357 (372)
T ss_pred cccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence 34566777777677777888888899999999999999999999999999999999998777666654433
No 418
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=44.69 E-value=28 Score=25.33 Aligned_cols=15 Identities=7% Similarity=-0.004 Sum_probs=6.7
Q ss_pred HHHHHHHhcCCCchh
Q psy12000 448 EQVAMYLAQKPTSRI 462 (507)
Q Consensus 448 ~~~~~~l~~~P~~~~ 462 (507)
+.|..+++..||...
T Consensus 34 e~l~~~lk~e~d~~~ 48 (77)
T cd02683 34 DLLMQVLKGTKDEAK 48 (77)
T ss_pred HHHHHHHhhCCCHHH
Confidence 333344444555443
No 419
>KOG1463|consensus
Probab=44.28 E-value=3e+02 Score=26.55 Aligned_cols=88 Identities=7% Similarity=0.017 Sum_probs=53.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHh----hhhcCCC--chHHHHHHHHHHhhCCHHHHHHHHHhhccc---CCCch--hhhhh
Q psy12000 286 CMASSFFLLRSFKDVILYLSSI----KSYYTSD--DSFNFNFAQAKCALGQYKEAEEMFLLVQNE---GLKND--YVYIS 354 (507)
Q Consensus 286 ~la~~~~~~~~~~~Ai~~~~~~----~~~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~---~~~~~--~~~~~ 354 (507)
.+...|+..++|.+|+.....+ ++.+... ..+...=..+|....+..+|...+..+-.. -+.+. ..-+.
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 4788999999999999765544 3333222 244454578899999999999999766421 11111 11122
Q ss_pred hh-cccCccchhhhHHHHHH
Q psy12000 355 HL-TKCSPSRAKTRLSFHLS 373 (507)
Q Consensus 355 ~l-~~~~~~~~~~~~A~~~~ 373 (507)
+. |..+...++|.-|+.++
T Consensus 213 LqSGIlha~ekDykTafSYF 232 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYF 232 (411)
T ss_pred HhccceeecccccchHHHHH
Confidence 21 44455556666665543
No 420
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=44.24 E-value=66 Score=25.12 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=22.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhc
Q psy12000 11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLG 54 (507)
Q Consensus 11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 54 (507)
.-|-..+..||+..|.+...++-+..+..+-.+..-|++...+|
T Consensus 64 ~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 64 SRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 34555666666666666666665543333333333444444433
No 421
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=43.88 E-value=67 Score=25.95 Aligned_cols=43 Identities=21% Similarity=0.168 Sum_probs=31.1
Q ss_pred HHHHHHHHhh--hhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhh
Q psy12000 299 DVILYLSSIK--SYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLV 341 (507)
Q Consensus 299 ~Ai~~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 341 (507)
++.++|+-+. .+......++..-|..+...|++++|.++|+..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 7777777654 344555555566788999999999999999864
No 422
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.77 E-value=86 Score=27.21 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=12.7
Q ss_pred hHhhHHHHHHHHHHHhhcCCchhh
Q psy12000 405 LRCHYQEAIDIYKRILLDHKDLLA 428 (507)
Q Consensus 405 ~~~~~~~Ai~~~~~~l~~~p~~~~ 428 (507)
..|+|++|..++++... +|++..
T Consensus 123 ~~g~Fk~A~eiLkr~~~-d~~~~~ 145 (200)
T cd00280 123 ENGEFKKAEEVLKRLFS-DPESQK 145 (200)
T ss_pred hcCchHHHHHHHHHHhc-CCCchh
Confidence 34566666666666655 444443
No 423
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=43.13 E-value=44 Score=24.24 Aligned_cols=26 Identities=27% Similarity=0.139 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILL 128 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~ 128 (507)
+...|.-.-+.|+|++|+.+|+++++
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34456666778888888888888764
No 424
>KOG0530|consensus
Probab=43.13 E-value=2.8e+02 Score=25.79 Aligned_cols=78 Identities=8% Similarity=0.004 Sum_probs=58.5
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChH
Q psy12000 108 SIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK-LDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSR 185 (507)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~ 185 (507)
.++.+..+.+.|+.+-..+|..+|-+-.++...=.|.-. +.+..+=++++..++..+|.+-..+...-.+.-..|+..
T Consensus 51 AI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 51 AIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPS 129 (318)
T ss_pred HHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcc
Confidence 456677888999999999999999988887766555544 446778889999999999999887655544444445443
No 425
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=42.82 E-value=30 Score=32.21 Aligned_cols=43 Identities=19% Similarity=0.033 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCC
Q psy12000 25 ALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVP 67 (507)
Q Consensus 25 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~ 67 (507)
|..+|.++....|++...|..+|.+....|+.=+|+-.|-++.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHH
Confidence 7889999999999999999999999999999999998777653
No 426
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=42.60 E-value=47 Score=24.15 Aligned_cols=24 Identities=25% Similarity=0.131 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHH
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRIL 127 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l 127 (507)
...|.-.-..|+|++|+.+|.++|
T Consensus 10 ~~~Ave~D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 10 LKRAVELDQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH
Confidence 344555566677777777766655
No 427
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=42.37 E-value=1.7e+02 Score=23.57 Aligned_cols=43 Identities=14% Similarity=0.065 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhC--CchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12000 118 EAIDIYKRILLDH--KDLLALNVYGAMCYYKLDYYDVSQEQVAMY 160 (507)
Q Consensus 118 ~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 160 (507)
.+.++|+.+.... -..+..|..-|..+...|++++|.++|+..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 5666666665543 234445555566666666666666666654
No 428
>KOG2280|consensus
Probab=41.82 E-value=4.8e+02 Score=28.15 Aligned_cols=64 Identities=16% Similarity=0.037 Sum_probs=36.4
Q ss_pred chhhHHHHHHHhhcC--HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCc
Q psy12000 7 LTDAWLGYCHFHLGQ--YKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSR 70 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~ 70 (507)
.++.--+..+....+ =+++++...+=+...-...-.+..+|.-.+..|+++-|...++.-+.+.
T Consensus 472 ~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~ 537 (829)
T KOG2280|consen 472 RVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSG 537 (829)
T ss_pred HHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCcc
Confidence 334444555555422 2334444444444311222356778888899999999998887655433
No 429
>KOG0890|consensus
Probab=41.56 E-value=7.9e+02 Score=30.61 Aligned_cols=154 Identities=8% Similarity=-0.048 Sum_probs=85.3
Q ss_pred HHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy12000 45 NIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYK 124 (507)
Q Consensus 45 ~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~ 124 (507)
.+|.+-++.|.|..|+.++++........ ... ...+..+-.+|...+++|.-.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--------------~~~---------e~l~fllq~lY~~i~dpDgV~Gv~~ 1444 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--------------ETE---------EALYFLLQNLYGSIHDPDGVEGVSA 1444 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--------------HHH---------HHHHHHHHHHHHhcCCcchhhhHHH
Confidence 56777777888888887777642111100 000 0113345558888888888776665
Q ss_pred HHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCC
Q psy12000 125 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLID 204 (507)
Q Consensus 125 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~ 204 (507)
. ....|.-. ..-..+...|+|..|...|+++++.+|+.+..+.-.-...+..+.++..+...+-.+ ...+
T Consensus 1445 ~-r~a~~sl~----~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~-----~~~s 1514 (2382)
T KOG0890|consen 1445 R-RFADPSLY----QQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLI-----INRS 1514 (2382)
T ss_pred H-hhcCccHH----HHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchh-----hccC
Confidence 3 12333321 223456678999999999999999999977544322222334445555554333221 1111
Q ss_pred ChhHhHHHHHH-HHHhhccHHHHHHHHH
Q psy12000 205 VIPESRLNLVI-YHLKQEEHQEAFDLIK 231 (507)
Q Consensus 205 ~~~~~~~~l~~-~~~~~~~~~~A~~~l~ 231 (507)
....-+.+++. +-.+.+++|.-...+.
T Consensus 1515 e~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1515 EEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 11222333332 3367777777666654
No 430
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=40.19 E-value=3.8e+02 Score=26.48 Aligned_cols=54 Identities=13% Similarity=-0.061 Sum_probs=40.1
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCCCh-----hhHHHHHH--HHHhhccHHHHHHHHHh
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNPPE-----DTEFNIAS--CYFYLGMYLQANQILEK 65 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~--~~~~~g~~~eA~~~~~~ 65 (507)
.+...+..++|..|.+.|+++++..++.. ..+..++. .+.-.-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 46678899999999999999998865432 22334444 44557889999999985
No 431
>KOG0687|consensus
Probab=39.78 E-value=3.5e+02 Score=25.98 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCC------chhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHK------DLLALNVYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
....|.-|.+.|+-+.|.+.+++.....- |-.-....+|..|....=..+.++..+.+++
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE 172 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIE 172 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777665542 1122333456666555544455544444443
No 432
>KOG2062|consensus
Probab=39.67 E-value=5.2e+02 Score=27.92 Aligned_cols=210 Identities=8% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCC-HHHHHHHH
Q psy12000 260 MVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQ-YKEAEEMF 338 (507)
Q Consensus 260 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~ 338 (507)
.+...+...+.+.+....++...+-.....+|+.+|+|++|++|--.+.....-++...|..+.++--... .+++.+.|
T Consensus 38 EIsd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~ 117 (929)
T KOG2062|consen 38 EISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETY 117 (929)
T ss_pred HhhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHh
Q ss_pred H--h-hcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHH-HHHHhhhcHHHHHHHHHHHHhHhhHHHHHH
Q psy12000 339 L--L-VQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLME-YHQKLEDSLEEQLCLASIHFLRCHYQEAID 414 (507)
Q Consensus 339 ~--~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~ 414 (507)
+ + ....+++-..+...++++|+... ++..++-+..+.-..+-.-. ++..-...-.-...+........+-+--.+
T Consensus 118 ~~~~~~~~iD~rL~~iv~rmi~kcl~d~-e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~ 196 (929)
T KOG2062|consen 118 KNPEQKSPIDQRLRDIVERMIQKCLDDN-EYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNK 196 (929)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhhhh-HHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHhhcCCchhh-hHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhh
Q psy12000 415 IYKRILLDHKDLLA-LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNT 471 (507)
Q Consensus 415 ~~~~~l~~~p~~~~-~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~ 471 (507)
.+..+++..-+-+. -++.+..||.-+.+.+.+.+.+++.++ ..+.-.++..-.+++
T Consensus 197 vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~-e~~~llayQIAFDL~ 253 (929)
T KOG2062|consen 197 VLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVK-EDDLLLAYQIAFDLY 253 (929)
T ss_pred HHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHh-cchhhhHHHHHHHHh
No 433
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.84 E-value=1.3e+02 Score=20.71 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLD 129 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 129 (507)
++..-..+...|++++|.++.+++...
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 566667777888888888888877644
No 434
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.10 E-value=3.5e+02 Score=25.50 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLA---LNVYGAMCYYKLDYYDVSQEQVAMYLAQK 164 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 164 (507)
..+|.+|..+.-..+.++..+.+++...|... .-...|.-.+..-+|.+|-.++..++...
T Consensus 159 iRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 159 IRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 45777887777777888888888877765321 12223555556667778877777766443
No 435
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=37.77 E-value=2.6e+02 Score=26.33 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=22.7
Q ss_pred hHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000 207 PESRLNLVIYHLKQEEHQEAFDLIKNL 233 (507)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~A~~~l~~~ 233 (507)
.+++.|+|..|...++.+.+.+.+.+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 478899999999999999998877653
No 436
>KOG4151|consensus
Probab=37.72 E-value=42 Score=35.67 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhh
Q psy12000 407 CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN 465 (507)
Q Consensus 407 ~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 465 (507)
++|.+++....-++...|....+....+.+|.-+++.|-|++.+......+|.++.+.-
T Consensus 107 ~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 107 GEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred cchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 68888999889999999999998888899999999999999999999999999976543
No 437
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=37.62 E-value=44 Score=19.62 Aligned_cols=17 Identities=35% Similarity=0.718 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhCCc
Q psy12000 116 YQEAIDIYKRILLDHKD 132 (507)
Q Consensus 116 ~~~A~~~~~~~l~~~p~ 132 (507)
++.|..+|++.+...|+
T Consensus 3 ~dRAR~IyeR~v~~hp~ 19 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE 19 (32)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 44455555555544443
No 438
>KOG2997|consensus
Probab=36.87 E-value=36 Score=32.10 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=14.9
Q ss_pred hHhhHHHHHHHHHHHhhcCCchhhh
Q psy12000 405 LRCHYQEAIDIYKRILLDHKDLLAL 429 (507)
Q Consensus 405 ~~~~~~~Ai~~~~~~l~~~p~~~~~ 429 (507)
+.|..-+||..|..+++..||....
T Consensus 31 q~G~l~dai~fYR~AlqI~~diEs~ 55 (366)
T KOG2997|consen 31 QDGSLYDAINFYRDALQIVPDIESK 55 (366)
T ss_pred hcCcHHHHHHHHHhhhcCCchHHHH
Confidence 3456666666666666666665443
No 439
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=36.46 E-value=70 Score=31.39 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=32.5
Q ss_pred hcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12000 114 CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY 160 (507)
Q Consensus 114 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 160 (507)
+..-+|+.+++.++...|.+..+...+..+|..+|-.+.|.+.|..+
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 44456777777777777777777777777777777777777766543
No 440
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=36.21 E-value=65 Score=18.28 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=16.8
Q ss_pred HHHHHHHHhcCCCchhhhhHHHhhh
Q psy12000 447 QEQVAMYLAQKPTSRIALNLKACNT 471 (507)
Q Consensus 447 ~~~~~~~l~~~P~~~~a~~~~~~~~ 471 (507)
++.-..++..+|.|..+++.+-++.
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll 27 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHH
Confidence 4556677777777777777665554
No 441
>PRK11619 lytic murein transglycosylase; Provisional
Probab=36.17 E-value=5.8e+02 Score=27.43 Aligned_cols=118 Identities=5% Similarity=-0.049 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHH-HHHHhcC--ChhHHHHHHHHHhhcHHH-HHHHHH--HHHHhh
Q psy12000 41 DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSF-HLSHKLG--DEKSLMEYHQKLEDSLEE-QLCLAS--IHFLRC 114 (507)
Q Consensus 41 ~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~l~~~~~~-~~~la~--~~~~~g 114 (507)
...+.-+.-....|++..+.....+..+.+...-+-+ .+..... ...++..+.....+.|.. .+.... .+.+.+
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~ 113 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTNFIRANPTLPPARSLQSRFVNELARRE 113 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcc
Confidence 3456777778888888888777766644333211111 1111111 234444444444444432 221111 122456
Q ss_pred cHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 115 HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 115 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
++..-+..+ ...|.+.......+......|+.++|.+...++-.
T Consensus 114 ~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~ 157 (644)
T PRK11619 114 DWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWL 157 (644)
T ss_pred CHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 666655533 23477777777777888889998888877777643
No 442
>KOG0546|consensus
Probab=35.93 E-value=17 Score=34.76 Aligned_cols=67 Identities=16% Similarity=0.098 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
..+++.+-.+.+.+..|+..-..++..+++...+++..+..+....++++|++.+..+....|++..
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred ccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 3457778888899999998888888888899999999999999999999999999999999998874
No 443
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=35.90 E-value=3e+02 Score=25.02 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=11.0
Q ss_pred hcHHHHHHHHHHHHHhCCc
Q psy12000 114 CHYQEAIDIYKRILLDHKD 132 (507)
Q Consensus 114 g~~~~A~~~~~~~l~~~p~ 132 (507)
++...|+.++++++..+|.
T Consensus 192 ~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 192 ETLQLALALLQRAFQLNDK 210 (230)
T ss_pred ccHHHHHHHHHHHHHhCCC
Confidence 4555566666666666553
No 444
>KOG0686|consensus
Probab=35.74 E-value=4.4e+02 Score=26.16 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=16.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHH
Q psy12000 105 CLASIHFLRCHYQEAIDIYKRILL 128 (507)
Q Consensus 105 ~la~~~~~~g~~~~A~~~~~~~l~ 128 (507)
.-|.+....++|..|..+|-.+..
T Consensus 234 ~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 234 AAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666777788888887765543
No 445
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=34.80 E-value=1.3e+02 Score=24.22 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLAL 136 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 136 (507)
...+|..+..+|++++|...|-+++..+|.-.+.
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~L 99 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAEL 99 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 4578999999999999999999999999876543
No 446
>KOG0686|consensus
Probab=34.61 E-value=4.7e+02 Score=25.98 Aligned_cols=98 Identities=17% Similarity=0.152 Sum_probs=55.5
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHH
Q psy12000 208 ESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCM 287 (507)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 287 (507)
.++..+|..|...|+.+.|++.+.+..+-.... +..+ ..+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~---khvI----------------------------------nm~ln~ 193 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSA---KHVI----------------------------------NMCLNL 193 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch---HHHH----------------------------------HHHHHH
Confidence 356778899999999999998887643221110 0001 111122
Q ss_pred HHHHHhhcCHHHHHHHHHHhhhhcC---C-----CchHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000 288 ASSFFLLRSFKDVILYLSSIKSYYT---S-----DDSFNFNFAQAKCALGQYKEAEEMFLLVQ 342 (507)
Q Consensus 288 a~~~~~~~~~~~Ai~~~~~~~~~~~---~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~~~ 342 (507)
..+-...|+|.+...+..++..... + .....-.-|.+.+.+++|..|..+|-.+.
T Consensus 194 i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 194 ILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2333345555555555555443310 0 11222335778888889999999997764
No 447
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.36 E-value=1.4e+02 Score=30.83 Aligned_cols=45 Identities=7% Similarity=-0.012 Sum_probs=32.6
Q ss_pred HHHHHHHHhCCchh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12000 121 DIYKRILLDHKDLL-ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP 165 (507)
Q Consensus 121 ~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 165 (507)
++++..++..|..+ .-++.++.|+..+++-+.|..+++++.+.+-
T Consensus 194 ~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~end 239 (926)
T COG5116 194 EILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKEND 239 (926)
T ss_pred HHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhhhh
Confidence 45666777776542 2355677888889999999999988876554
No 448
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=33.36 E-value=5.2e+02 Score=26.07 Aligned_cols=65 Identities=12% Similarity=0.098 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHh--CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCcH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLD--HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA-QKPTSR 168 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~ 168 (507)
...+...+...|..++++.+.+.=+.. .||+..+.. +-..+++.|+|..|.++...++. ...+++
T Consensus 106 ~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~-Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~ 173 (429)
T PF10037_consen 106 HHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL-LMDHFLKKGNYKSAAKVATEMMLQEEFDNP 173 (429)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH-HHHHHhhcccHHHHHHHHHHHHHhhccCCc
Confidence 346677788888899999988776554 377766554 34678888999999988887654 334443
No 449
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=33.28 E-value=4e+02 Score=24.70 Aligned_cols=28 Identities=21% Similarity=-0.101 Sum_probs=22.2
Q ss_pred ChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000 205 VIPESRLNLVIYHLKQEEHQEAFDLIKN 232 (507)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~~~~A~~~l~~ 232 (507)
-+|+.+..+|..|++.|++.+|..++..
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 3678899999999999999999988853
No 450
>KOG3807|consensus
Probab=33.21 E-value=4.5e+02 Score=25.28 Aligned_cols=146 Identities=11% Similarity=0.047 Sum_probs=0.0
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHH
Q psy12000 10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSL 89 (507)
Q Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (507)
+.+-...-+..+..+-|+.-..+++++|.-+.++..++ --..--.-+|++.++++.+... ..+.-.......+..
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLA--EEEa~Ti~~AE~l~k~ALka~e---~~yr~sqq~qh~~~~ 262 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLA--EEEATTIVDAERLFKQALKAGE---TIYRQSQQCQHQSPQ 262 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhh--hhhhhhHHHHHHHHHHHHHHHH---HHHhhHHHHhhhccc
Q ss_pred HHHHHHHhhcHHH--HHHHHHHHHHhhcHHHHHHHHHHHHHhCC--chhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12000 90 MEYHQKLEDSLEE--QLCLASIHFLRCHYQEAIDIYKRILLDHK--DLLALNVYGAMCYYKLDYYDVSQEQVAMY 160 (507)
Q Consensus 90 ~~~~~~l~~~~~~--~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 160 (507)
.+....-...... .-.||.+-.++|+..+|++.|+.+.+..| .-..++-++-.....+.-|.....++-+.
T Consensus 263 ~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 263 HEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred hhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 451
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.20 E-value=2.3e+02 Score=21.87 Aligned_cols=48 Identities=10% Similarity=-0.004 Sum_probs=35.6
Q ss_pred HHHHHHHhC-CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 122 IYKRILLDH-KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 122 ~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
.++++-..+ +--+..+-.||.+|.+.|+-+.|..-|+.=-...|.+..
T Consensus 59 ~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 59 YLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred HHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchh
Confidence 344444343 344567778899999999999999999888888888765
No 452
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=33.07 E-value=2.6e+02 Score=22.58 Aligned_cols=47 Identities=9% Similarity=0.000 Sum_probs=36.5
Q ss_pred HhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHH
Q psy12000 17 FHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILE 64 (507)
Q Consensus 17 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 64 (507)
...+.....+.+++.++..++.++..+..+..+|... +.++.+..++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3457899999999999998888888888888888765 4455556665
No 453
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=32.81 E-value=78 Score=31.02 Aligned_cols=30 Identities=10% Similarity=-0.137 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q psy12000 22 YKQALGIYETLRHLPNPPEDTEFNIASCYF 51 (507)
Q Consensus 22 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 51 (507)
|+.|++-.+..++..|++....+..+.+++
T Consensus 130 FdaAlER~e~Gl~~~p~s~~L~l~~skIll 159 (404)
T PF12753_consen 130 FDAALERVELGLEKFPDSILLLLAKSKILL 159 (404)
T ss_dssp HHHHHHHHHHGGSSS--H-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcCCCchhHHHHHHHHHH
Confidence 566777777777778887665555554443
No 454
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=31.44 E-value=5.5e+02 Score=25.74 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc-hh-----HHHHHHHHHHHhcC
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKD-LL-----ALNVYGAMCYYKLD 148 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~-----~~~~~la~~~~~~g 148 (507)
.-.||...+..|+|+-|...|+-+....-. .. .+.-..|.+.+..+
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~ 262 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQG 262 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcC
Confidence 346999999999999999999998876542 22 23334555666555
No 455
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=31.43 E-value=2.6e+02 Score=21.97 Aligned_cols=40 Identities=13% Similarity=-0.023 Sum_probs=16.1
Q ss_pred hcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHH
Q psy12000 114 CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVS 153 (507)
Q Consensus 114 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 153 (507)
-..+||..+..-.-........+..-.....++.|+|++|
T Consensus 20 HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A 59 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA 59 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444554444433322222222333334455555555555
No 456
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.36 E-value=1e+02 Score=26.74 Aligned_cols=36 Identities=11% Similarity=0.163 Sum_probs=25.0
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHH
Q psy12000 105 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGA 141 (507)
Q Consensus 105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 141 (507)
....+..+.|.|++|.+++++... +|++......|.
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~ 151 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLL 151 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHH
Confidence 344567788888888888888877 776655444443
No 457
>KOG1076|consensus
Probab=31.26 E-value=6.9e+02 Score=26.83 Aligned_cols=60 Identities=10% Similarity=0.091 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHH-hhcCCchhhhHHHHHhhccccccchhHHHHHH---HHHhcCCCchhhhhHH
Q psy12000 408 HYQEAIDIYKRI-LLDHKDLLALNVYGAMCYYKLDYYDVSQEQVA---MYLAQKPTSRIALNLK 467 (507)
Q Consensus 408 ~~~~Ai~~~~~~-l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~---~~l~~~P~~~~a~~~~ 467 (507)
.|..-+...++. +.-.|++..-+...|.=-...|+|.++.++.. ++..+.|+...+++++
T Consensus 633 ~frr~Le~serqsf~gPPEn~RehVvaAsKAm~~Gnw~~c~~fi~nn~KvW~Lfpn~d~V~~Ml 696 (843)
T KOG1076|consen 633 SFRRQLEHSERQSFTGPPENTREHVVAASKAMQKGNWQKCFEFIVNNIKVWDLFPNADTVLDML 696 (843)
T ss_pred HHHHHHHHHhhccccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhhhhHHHhcccHHHHHHHH
Confidence 456666666554 45778998877776666778999999999765 4678889988776653
No 458
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=31.17 E-value=1.8e+02 Score=22.67 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLD 129 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 129 (507)
.+..|.+....||+..|.+...++-+.
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 345566666667777777766666444
No 459
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=31.14 E-value=87 Score=22.68 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=11.6
Q ss_pred HHHHHHhhcHHHHHHHHHHHHH
Q psy12000 107 ASIHFLRCHYQEAIDIYKRILL 128 (507)
Q Consensus 107 a~~~~~~g~~~~A~~~~~~~l~ 128 (507)
|.-.-..|+|++|+.+|.++++
T Consensus 13 A~~eD~~gny~eA~~lY~~ale 34 (75)
T cd02680 13 AFDEDEKGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHhhHhhhHHHHHHHHHHHHH
Confidence 3333445566666666655553
No 460
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=30.78 E-value=4.9e+02 Score=25.01 Aligned_cols=51 Identities=14% Similarity=-0.004 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12000 99 SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVA 158 (507)
Q Consensus 99 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 158 (507)
+|-.+.....+....|+..+|..+..+ -|+. .....|++.|+|.+|.+..-
T Consensus 236 sPIGyepFv~~~~~~~~~~eA~~yI~k----~~~~-----~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 236 SPIGYEPFVEACLKYGNKKEASKYIPK----IPDE-----ERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCCChHHHHHHHHHCCCHHHHHHHHHh----CChH-----HHHHHHHHCCCHHHHHHHHH
Confidence 333344455566677888888888777 3332 34567888999999987643
No 461
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=30.70 E-value=2.9e+02 Score=22.33 Aligned_cols=58 Identities=14% Similarity=0.036 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCch---------------hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDL---------------LALNVYGAMCYYKLDYYDVSQEQVAMY 160 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~ 160 (507)
+..+|....+.+++-.++-.|++++....+- .-.-+++|..+-.+|+.+-.+++++-+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 4567888888888888888888888654211 123467888888899988888887654
No 462
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=29.21 E-value=1.2e+02 Score=17.37 Aligned_cols=26 Identities=8% Similarity=-0.207 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhc----CCHHHHHHHHHHHH
Q psy12000 136 LNVYGAMCYYKL----DYYDVSQEQVAMYL 161 (507)
Q Consensus 136 ~~~~la~~~~~~----g~~~~A~~~~~~~l 161 (507)
+.+.+|.+|..- .+.++|..+++++.
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa 32 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAA 32 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 344555555431 25555555555543
No 463
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=28.21 E-value=1e+02 Score=22.13 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=12.9
Q ss_pred HHHHHHHhhcHHHHHHHHHHHH
Q psy12000 106 LASIHFLRCHYQEAIDIYKRIL 127 (507)
Q Consensus 106 la~~~~~~g~~~~A~~~~~~~l 127 (507)
.|.-.-..|++++|+.+|.+++
T Consensus 14 ~Av~~d~~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 14 KALKADEAGDYEEALELYKKAI 35 (77)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555666666666666554
No 464
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=27.87 E-value=9.3e+02 Score=27.27 Aligned_cols=51 Identities=10% Similarity=0.037 Sum_probs=33.8
Q ss_pred hcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhC--CHHHHHHHHHhhccc
Q psy12000 294 LRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALG--QYKEAEEMFLLVQNE 344 (507)
Q Consensus 294 ~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~~~~~ 344 (507)
.++.+.-.+.+..+.....+...+....-.+|.+++ ++++|+....+....
T Consensus 791 ~~KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 791 ESKVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred ccHHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 445555556555555433444556666778888888 899999988877633
No 465
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=27.27 E-value=6.7e+02 Score=25.42 Aligned_cols=79 Identities=5% Similarity=-0.026 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhhcHHH---HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000 87 KSLMEYHQKLEDSLEE---QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ 163 (507)
Q Consensus 87 ~~~~~~~~~l~~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 163 (507)
++.....+.++++|.+ ++.|..-+..+|.+++-.+.|+++..-.|-.+.++..--..-...++|..-..+|.+++..
T Consensus 26 ~D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 26 GDELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred chHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 3344677788888876 7889999999999999999999999888876666544333334557888888888888765
Q ss_pred CC
Q psy12000 164 KP 165 (507)
Q Consensus 164 ~p 165 (507)
.-
T Consensus 106 ~l 107 (660)
T COG5107 106 SL 107 (660)
T ss_pred hc
Confidence 43
No 466
>PLN00061 photosystem II protein Psb27; Provisional
Probab=26.92 E-value=3.7e+02 Score=22.31 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHH
Q psy12000 410 QEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILV 489 (507)
Q Consensus 410 ~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (507)
-+.++.+..+++.+|++..-.. .--++|.+..+.++..+-.++.+..+.....+ .-|.+.+-.---
T Consensus 61 r~VV~tLresl~l~p~D~~~~~---------~aa~~Ake~IndYisryR~~~~V~gl~SfttM-----qtALnsLAghYs 126 (150)
T PLN00061 61 REVVKTLRESLKEDPKDEAKFR---------RTADAAKESIREYLGNWRGQKTVAEEESYVEL-----EKAIRSLASFYS 126 (150)
T ss_pred HHHHHHHHHHHccCCcchHHHH---------HHHHHHHHHHHHHHHHhcCCccccccchHHHH-----HHHHHHHHHHHH
Confidence 3345556677778887765211 12478888888998888777766555444444 233333444444
Q ss_pred hCCCCccCCC
Q psy12000 490 SAGPRVRFPP 499 (507)
Q Consensus 490 ~~~~~~~~~~ 499 (507)
.+|++-.||+
T Consensus 127 syGpnrPLPe 136 (150)
T PLN00061 127 KAGPSAPLPE 136 (150)
T ss_pred hcCCCCCCCH
Confidence 5566666664
No 467
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=26.51 E-value=4.2e+02 Score=26.69 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=38.9
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhh--hhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000 286 CMASSFFLLRSFKDVILYLSSIK--SYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQ 342 (507)
Q Consensus 286 ~la~~~~~~~~~~~Ai~~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~ 342 (507)
.+...+...|..++++..++.=. -+.|++-.+.+ +-..+.+.|+|..|.++...+.
T Consensus 108 a~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~-Lmd~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 108 ALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL-LMDHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH-HHHHHhhcccHHHHHHHHHHHH
Confidence 45566778888888888776433 34466654433 6677888888888888887654
No 468
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=26.48 E-value=1.2e+02 Score=21.81 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=13.2
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHH
Q psy12000 105 CLASIHFLRCHYQEAIDIYKRIL 127 (507)
Q Consensus 105 ~la~~~~~~g~~~~A~~~~~~~l 127 (507)
..|.-.-..|+|++|+.+|.+++
T Consensus 11 ~~Av~~D~~g~y~eA~~~Y~~ai 33 (75)
T cd02678 11 KKAIEEDNAGNYEEALRLYQHAL 33 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444555666666666666554
No 469
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.30 E-value=6.1e+02 Score=24.61 Aligned_cols=36 Identities=3% Similarity=-0.124 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 133 LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 133 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
++-+-|..|..+...|++-++...+.+...+.|+..
T Consensus 212 npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~ 247 (449)
T COG3014 212 NPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQS 247 (449)
T ss_pred hHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhh
Confidence 455666677777778888888888888877777643
No 470
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=26.06 E-value=22 Score=36.91 Aligned_cols=55 Identities=7% Similarity=-0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHH--hCCc-hhHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRILL--DHKD-LLALNVYGAMCYYKLDYYDVSQEQVA 158 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l~--~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~ 158 (507)
+.-+..+...|++..|..++.++-. ..|. ........|.+....|++++|++.+.
T Consensus 28 L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~ 85 (536)
T PF04348_consen 28 LLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLN 85 (536)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhc
Confidence 3445555566666666666555441 1221 22333444555555666666665554
No 471
>KOG2168|consensus
Probab=25.80 E-value=9.2e+02 Score=26.54 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=16.6
Q ss_pred HHhhccHHHHHHHHHhc--CCCChH
Q psy12000 217 HLKQEEHQEAFDLIKNL--EPSVPQ 239 (507)
Q Consensus 217 ~~~~~~~~~A~~~l~~~--~~~~~~ 239 (507)
+...|++++|+..++.+ .|.++.
T Consensus 717 ~y~~~~~e~aL~~le~l~LiP~~~~ 741 (835)
T KOG2168|consen 717 LYHNGEWEEALSILEHLDLIPLDPL 741 (835)
T ss_pred HHhhhHHHHHHHHHHHHhccCCChh
Confidence 45689999999988765 455543
No 472
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=25.68 E-value=1.2e+02 Score=29.81 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccH
Q psy12000 22 YKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMY 56 (507)
Q Consensus 22 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 56 (507)
..+|+++++++-. ...|+.|..+|.+++.+|+.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL 366 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNL 366 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcc
Confidence 5667888887754 55678899999998888775
No 473
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=25.51 E-value=1.6e+02 Score=17.65 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=17.4
Q ss_pred HhHHHHHHHHHhhcc---HHHHHHHHHhcCCC
Q psy12000 208 ESRLNLVIYHLKQEE---HQEAFDLIKNLEPS 236 (507)
Q Consensus 208 ~~~~~l~~~~~~~~~---~~~A~~~l~~~~~~ 236 (507)
+..+++|..+++... ..+.+.+++++...
T Consensus 2 qt~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~ 33 (35)
T PF14852_consen 2 QTQFNYAWGLVKSNNREDQQEGIALLEELYRD 33 (35)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHCCC
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 456777777776543 44566666655433
No 474
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=25.19 E-value=1e+02 Score=24.70 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=17.3
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCCCh
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNPPE 40 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~ 40 (507)
+|..+...|++++|...|-+++...|+..
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 56666666666666666666666666543
No 475
>KOG4563|consensus
Probab=24.98 E-value=2e+02 Score=27.98 Aligned_cols=53 Identities=8% Similarity=-0.033 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCC--------chhHHHHHHHHHHHhcCCHHHHH
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHK--------DLLALNVYGAMCYYKLDYYDVSQ 154 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~ 154 (507)
.++..|+-++.++++++|...|..+..+.. ++.++++..|..++..++++..+
T Consensus 43 ~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 43 ELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367889999999999999999999987653 45667777888888877765553
No 476
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=24.64 E-value=1.3e+02 Score=21.45 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=13.4
Q ss_pred HHHHHHHhhcHHHHHHHHHHHH
Q psy12000 106 LASIHFLRCHYQEAIDIYKRIL 127 (507)
Q Consensus 106 la~~~~~~g~~~~A~~~~~~~l 127 (507)
.|.-.-..|++++|+.+|.+++
T Consensus 12 ~Av~~D~~g~~~~Al~~Y~~a~ 33 (75)
T cd02656 12 QAVKEDEDGNYEEALELYKEAL 33 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455577777777666655
No 477
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.57 E-value=2.8e+02 Score=20.12 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHhhc-CCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHH
Q psy12000 408 HYQEAIDIYKRILLD-HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKP 486 (507)
Q Consensus 408 ~~~~Ai~~~~~~l~~-~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 486 (507)
.|++|+..++.++.. ..++.. .++++..|++.+.+ .+.|-. .-..++...+.
T Consensus 6 sfEeal~~LE~Iv~~LE~~~l~--------------Leesl~lyeeG~~L---------~k~C~~----~L~~aE~ki~~ 58 (76)
T PRK14063 6 SFEEAISQLEHLVSKLEQGDVP--------------LEEAISYFKEGMEL---------SKLCDE----KLKNVQEQMAV 58 (76)
T ss_pred CHHHHHHHHHHHHHHHHCCCCC--------------HHHHHHHHHHHHHH---------HHHHHH----HHHHHHHHHHH
Confidence 477788877777652 222221 24555555555443 222221 23566666666
Q ss_pred HHHhCCCCccCCCCcc
Q psy12000 487 ILVSAGPRVRFPPGAD 502 (507)
Q Consensus 487 ~~~~~~~~~~~~~~~~ 502 (507)
|+...+.-+.|++.++
T Consensus 59 l~~~~~~~~~~~~~~~ 74 (76)
T PRK14063 59 ILGEDGELEPFTALGD 74 (76)
T ss_pred HHhcCCCCCCCCcccc
Confidence 7665555566766654
No 478
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=24.47 E-value=1.4e+02 Score=21.48 Aligned_cols=22 Identities=23% Similarity=0.144 Sum_probs=11.9
Q ss_pred HHHHHHHhhcHHHHHHHHHHHH
Q psy12000 106 LASIHFLRCHYQEAIDIYKRIL 127 (507)
Q Consensus 106 la~~~~~~g~~~~A~~~~~~~l 127 (507)
.|.-.-..|+|++|+.+|.+++
T Consensus 12 ~Av~~D~~g~y~eA~~lY~~al 33 (75)
T cd02684 12 QAVKKDQRGDAAAALSLYCSAL 33 (75)
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 3444445566666666555554
No 479
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=24.44 E-value=3.5e+02 Score=21.25 Aligned_cols=53 Identities=25% Similarity=0.327 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY 160 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 160 (507)
.+.....+..+|+|++|+ .+......+++.-..|.|-.+.|--+++...+.++
T Consensus 43 ~lIr~~sLmNrG~Yq~AL-----l~~~~~~~pdL~p~~AL~a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 43 ALIRLSSLMNRGDYQEAL-----LLPQCHCYPDLEPWAALCAWKLGLASALESRLTRL 95 (116)
T ss_dssp HHHHHHHHHHTT-HHHHH-----HHHTTS--GGGHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH-----HhcccCCCccHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 556677889999999992 23344455566666788999999999998887765
No 480
>KOG2114|consensus
Probab=24.04 E-value=9.9e+02 Score=26.32 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=33.9
Q ss_pred HHHhhcCHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhhccHHHHHHHHHhCCC
Q psy12000 15 CHFHLGQYKQALGIYETLRHLPNPP-EDTEFNIASCYFYLGMYLQANQILEKVPP 68 (507)
Q Consensus 15 ~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~~~~ 68 (507)
..++...|+-|+..-+.- ..+++. .+.+-..|.-++..|++++|...|-+.+.
T Consensus 343 iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 445666777777766542 222222 24556678888888888888888776643
No 481
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=23.79 E-value=8.2e+02 Score=25.28 Aligned_cols=84 Identities=10% Similarity=-0.099 Sum_probs=41.3
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHH
Q psy12000 108 SIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAA 187 (507)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A 187 (507)
.++-..-+..--..+..+++... ++.-+++.++.||... ..++=..+++++++.+-++..--.-++..+ ..++.+.+
T Consensus 74 ~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y-Ekik~sk~ 150 (711)
T COG1747 74 TIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY-EKIKKSKA 150 (711)
T ss_pred HHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH-HHhchhhH
Confidence 33333334444445555555433 3344566667777666 445556666666665555544322233322 22444444
Q ss_pred HHhhHHH
Q psy12000 188 ENQLKPI 194 (507)
Q Consensus 188 ~~~l~~~ 194 (507)
...|.++
T Consensus 151 a~~f~Ka 157 (711)
T COG1747 151 AEFFGKA 157 (711)
T ss_pred HHHHHHH
Confidence 4445444
No 482
>KOG0292|consensus
Probab=23.61 E-value=7e+02 Score=27.65 Aligned_cols=145 Identities=17% Similarity=0.047 Sum_probs=0.0
Q ss_pred CCccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHh
Q psy12000 3 NADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHK 82 (507)
Q Consensus 3 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~ 82 (507)
++++.+++.|+ ..-|+.+.|++...++ ++++.|..+|...+.+|+.+=|+.+|++. ..-..+..++..
T Consensus 643 VkD~~tRF~La---Le~gnle~ale~akkl-----dd~d~w~rLge~Al~qgn~~IaEm~yQ~~----knfekLsfLYli 710 (1202)
T KOG0292|consen 643 VKDERTRFELA---LECGNLEVALEAAKKL-----DDKDVWERLGEEALRQGNHQIAEMCYQRT----KNFEKLSFLYLI 710 (1202)
T ss_pred ecCcchheeee---hhcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHhcchHHHHHHHHHh----hhhhheeEEEEE
Q ss_pred cCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 83 LGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
.++.+++.......+ .-+=+...++.--|-.-.+...+++......+-+|...+ ..|.-++|.++.+.+-.
T Consensus 711 Tgn~eKL~Km~~iae-----~r~D~~~~~qnalYl~dv~ervkIl~n~g~~~laylta~----~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 711 TGNLEKLSKMMKIAE-----IRNDATGQFQNALYLGDVKERVKILENGGQLPLAYLTAA----AHGLEDQAEKLGEELEK 781 (1202)
T ss_pred eCCHHHHHHHHHHHH-----hhhhhHHHHHHHHHhccHHHHHHHHHhcCcccHHHHHHh----hcCcHHHHHHHHHhhcc
Q ss_pred cCCCcH
Q psy12000 163 QKPTSR 168 (507)
Q Consensus 163 ~~p~~~ 168 (507)
..|.-|
T Consensus 782 ~~~~lP 787 (1202)
T KOG0292|consen 782 QVPSLP 787 (1202)
T ss_pred ccCCCC
No 483
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=23.39 E-value=2.2e+02 Score=22.98 Aligned_cols=74 Identities=18% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhh--hhcCCCchHHHHHHHHHHhhCCHHHHHHHH
Q psy12000 261 VKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIK--SYYTSDDSFNFNFAQAKCALGQYKEAEEMF 338 (507)
Q Consensus 261 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 338 (507)
++++++.|.....-..++..+..+...+... ++..++|.-+. .+......++-..|..+...|++.+|.++|
T Consensus 49 Lerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 49 LERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred Hh
Q psy12000 339 LL 340 (507)
Q Consensus 339 ~~ 340 (507)
+.
T Consensus 123 ~~ 124 (125)
T smart00777 123 QL 124 (125)
T ss_pred Hc
No 484
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=23.39 E-value=1.7e+02 Score=17.14 Aligned_cols=12 Identities=8% Similarity=-0.000 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q psy12000 150 YDVSQEQVAMYL 161 (507)
Q Consensus 150 ~~~A~~~~~~~l 161 (507)
+++|+.+|+++.
T Consensus 24 ~~~A~~~~~~Aa 35 (39)
T PF08238_consen 24 YEKAFKWYEKAA 35 (39)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccchHHHHHHHH
Confidence 455555555443
No 485
>KOG4563|consensus
Probab=23.10 E-value=1.3e+02 Score=29.15 Aligned_cols=55 Identities=9% Similarity=-0.062 Sum_probs=44.4
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHhcCCC--------CChhhHHHHHHHHHhhccHHHHHHHH
Q psy12000 9 DAWLGYCHFHLGQYKQALGIYETLRHLPN--------PPEDTEFNIASCYFYLGMYLQANQIL 63 (507)
Q Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~eA~~~~ 63 (507)
.+..|.-.+.++++++|...|..++.+.. ...++++..|.+++..++++...-..
T Consensus 44 lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 44 LVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34579999999999999999999987632 33477889999999999988876543
No 486
>KOG2066|consensus
Probab=23.09 E-value=1e+03 Score=26.02 Aligned_cols=148 Identities=13% Similarity=0.042 Sum_probs=0.0
Q ss_pred hhhccChHHHHHhhHHHHHhhCCCCCCC--hhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhcc
Q psy12000 178 TYKLFTSRAAENQLKPILVSILPPLIDV--IPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDT 255 (507)
Q Consensus 178 ~~~~~~~~~A~~~l~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~ 255 (507)
.++.+.+++|..+. +......+. ..+....+..-++..|+|++|-..+-.+...+...|...-.....+++.
T Consensus 366 ll~~k~yeeAl~~~-----k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l- 439 (846)
T KOG2066|consen 366 LLEKKKYEEALDAA-----KASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL- 439 (846)
T ss_pred HHHhhHHHHHHHHH-----HhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc-
Q ss_pred CcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCC--------------------Cc
Q psy12000 256 GSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTS--------------------DD 315 (507)
Q Consensus 256 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~--------------------~~ 315 (507)
..++.-.+..+...+.......|...+. ..-..+++.+.+.+++ +.
T Consensus 440 ---------~~Ia~~lPt~~~rL~p~vYemvLve~L~-----~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~ 505 (846)
T KOG2066|consen 440 ---------TDIAPYLPTGPPRLKPLVYEMVLVEFLA-----SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSEST 505 (846)
T ss_pred ---------chhhccCCCCCcccCchHHHHHHHHHHH-----HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccch
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHhhcccC
Q psy12000 316 SFNFNFAQAKCALGQYKEAEEMFLLVQNEG 345 (507)
Q Consensus 316 ~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~ 345 (507)
...-.|+..|...++|++|+..|.++.+.+
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccChH
No 487
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=22.10 E-value=3.2e+02 Score=19.93 Aligned_cols=60 Identities=18% Similarity=0.065 Sum_probs=49.6
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhC
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV 66 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~ 66 (507)
..-.+.|.+-...|=.++|.....-.-..-|+...-...-+.+++-+|+...|...+...
T Consensus 7 ~L~VEaalAavNH~L~~ea~ailnalP~li~D~~~r~vcea~llfGL~~~~~A~~~L~~~ 66 (79)
T TIGR02498 7 KLVVEAALAAVNHSLPKEAHSILNALPQIIPDKKDRLVCEAILLFGLNHKNDAVKLLENM 66 (79)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHhcccccCCHhHHHHHHHHHHHhcCcHHHHHHHHhcC
Confidence 344567778888888999999888777777887777888999999999999999988764
No 488
>KOG0529|consensus
Probab=21.83 E-value=3.9e+02 Score=26.51 Aligned_cols=52 Identities=12% Similarity=-0.026 Sum_probs=21.4
Q ss_pred HHHHHHhhcCCchhhhHHHHHhhcccccc--chhHHHHHHHHHhcCCCchhhhh
Q psy12000 414 DIYKRILLDHKDLLALNVYGAMCYYKLDY--YDVSQEQVAMYLAQKPTSRIALN 465 (507)
Q Consensus 414 ~~~~~~l~~~p~~~~~~~~la~~y~~~g~--~~~A~~~~~~~l~~~P~~~~a~~ 465 (507)
.+...+++.+|+.-.+.....|++.+.+. +..=+...+++++.+|.|-.+++
T Consensus 96 ~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~ 149 (421)
T KOG0529|consen 96 KYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWH 149 (421)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchH
Confidence 33334444444444444444444443332 22333344444444444444444
No 489
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=21.63 E-value=1.8e+02 Score=21.01 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=10.7
Q ss_pred HHHHHHhhcHHHHHHHHHHHH
Q psy12000 107 ASIHFLRCHYQEAIDIYKRIL 127 (507)
Q Consensus 107 a~~~~~~g~~~~A~~~~~~~l 127 (507)
|.-.-..|+|++|..+|.+++
T Consensus 13 Ave~d~~~~y~eA~~~Y~~~i 33 (75)
T cd02677 13 ALEKEEEGDYEAAFEFYRAGV 33 (75)
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 333344455555555555544
No 490
>KOG0530|consensus
Probab=20.56 E-value=7e+02 Score=23.29 Aligned_cols=62 Identities=8% Similarity=-0.026 Sum_probs=41.6
Q ss_pred HHhhcCHH-HHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhh
Q psy12000 291 FFLLRSFK-DVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVY 352 (507)
Q Consensus 291 ~~~~~~~~-~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 352 (507)
....|++. .-+++.+.+...+..+--++-.+-++....+.|+.=+.+-.+.++.+..++..|
T Consensus 122 ve~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAW 184 (318)
T KOG0530|consen 122 VELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAW 184 (318)
T ss_pred HHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchh
Confidence 33344444 455677777766655544566688888888889999998888886665554333
No 491
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=20.39 E-value=7.5e+02 Score=23.54 Aligned_cols=144 Identities=13% Similarity=0.016 Sum_probs=82.4
Q ss_pred hhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHH--------HhCCC---------Ccccc-chHHHH
Q psy12000 18 HLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQIL--------EKVPP---------SRAKT-RLSFHL 79 (507)
Q Consensus 18 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~--------~~~~~---------~~~~~-~~~~~~ 79 (507)
..+++.+.++..++.+..+|.=-+..++.+.++.++|. +++...+ .+.+. .+... ...-.+
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T~~WL 189 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDETRAWL 189 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHHHHHH
Confidence 56788899999999998888877899999999999994 4444432 22221 01100 011111
Q ss_pred HHhcCChhHHHHH-HHHHh--hcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc---hhHHHHHHHHHHHhcCCHHHH
Q psy12000 80 SHKLGDEKSLMEY-HQKLE--DSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD---LLALNVYGAMCYYKLDYYDVS 153 (507)
Q Consensus 80 ~~~~~~~~~~~~~-~~~l~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A 153 (507)
............. ..... ........-+......|..+.|+..++..+...++ ..-..+.++.++...|..+-|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA 269 (301)
T TIGR03362 190 AQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELA 269 (301)
T ss_pred HhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 1110000000000 00000 00011234466677788889999888876554332 233455677888888888888
Q ss_pred HHHHHHHHh
Q psy12000 154 QEQVAMYLA 162 (507)
Q Consensus 154 ~~~~~~~l~ 162 (507)
..+++.+.+
T Consensus 270 ~~ll~~L~~ 278 (301)
T TIGR03362 270 QQLYAALDQ 278 (301)
T ss_pred HHHHHHHHH
Confidence 888887653
No 492
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=20.05 E-value=5.7e+02 Score=28.87 Aligned_cols=112 Identities=14% Similarity=0.141 Sum_probs=64.6
Q ss_pred hHHHHHHHHHhhc--cHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhH
Q psy12000 209 SRLNLVIYHLKQE--EHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQC 286 (507)
Q Consensus 209 ~~~~l~~~~~~~~--~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 286 (507)
-...+..+|.+++ ++++|+..+.++...++.. ...+.-| +.-......-|+.|+..|+. ...
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~-ae~alky--l~fLvDvn~Ly~~ALG~YDl-------------~La 877 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREEDPES-AEEALKY--LCFLVDVNKLYDVALGTYDL-------------ELA 877 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHH-HHHHHhH--heeeccHHHHHHHHhhhcCH-------------HHH
Confidence 3455667788888 8899988887765443221 1111111 11112223344555444321 012
Q ss_pred HHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhh
Q psy12000 287 MASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLV 341 (507)
Q Consensus 287 la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 341 (507)
+..+-..+++..|=+-++++....+|.- ..=.+-..+|+|++|+.++.++
T Consensus 878 l~VAq~SQkDPKEYLPfL~~L~~l~~~~-----rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 878 LMVAQQSQKDPKEYLPFLQELQKLPPLY-----RRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred HHHHHHhccChHHHHHHHHHHHhCChhh-----eeeeHhhhhCCHHHHHHHHHhh
Confidence 3445566788888888888877765432 2334456789999999988654
Done!