Query psy12000
Match_columns 507
No_of_seqs 226 out of 2286
Neff 10.2
Searched_HMMs 29240
Date Fri Aug 16 16:09:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12000.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12000hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 8.1E-39 2.8E-43 317.4 39.6 382 10-475 3-387 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 8.9E-35 3E-39 288.3 36.9 366 45-494 4-372 (388)
3 2xpi_A Anaphase-promoting comp 100.0 1.1E-34 3.6E-39 304.1 39.0 433 9-494 87-583 (597)
4 2xpi_A Anaphase-promoting comp 100.0 8.6E-33 2.9E-37 289.7 35.6 433 7-472 118-595 (597)
5 2gw1_A Mitochondrial precursor 100.0 5.6E-33 1.9E-37 285.2 32.2 384 6-469 6-491 (514)
6 3fp2_A TPR repeat-containing p 100.0 6.3E-32 2.2E-36 279.1 31.3 406 7-465 26-500 (537)
7 2gw1_A Mitochondrial precursor 100.0 1.2E-30 4E-35 267.9 36.1 408 40-495 6-483 (514)
8 2y4t_A DNAJ homolog subfamily 100.0 1.6E-30 5.6E-35 262.5 36.4 373 21-495 7-415 (450)
9 3ieg_A DNAJ homolog subfamily 100.0 6.7E-31 2.3E-35 256.3 32.0 324 5-473 2-352 (359)
10 2y4t_A DNAJ homolog subfamily 100.0 4.9E-30 1.7E-34 259.0 36.4 350 7-462 27-416 (450)
11 4g1t_A Interferon-induced prot 100.0 6E-30 2.1E-34 260.2 33.0 395 7-468 52-471 (472)
12 3fp2_A TPR repeat-containing p 100.0 3.3E-30 1.1E-34 266.3 28.8 383 101-496 26-497 (537)
13 3ieg_A DNAJ homolog subfamily 100.0 3.8E-29 1.3E-33 243.8 33.8 319 101-496 4-341 (359)
14 3hym_B Cell division cycle pro 100.0 2E-27 7E-32 229.0 25.3 291 102-472 24-315 (330)
15 2xm6_A Protein corresponding t 100.0 4.5E-26 1.5E-30 232.9 36.1 389 6-494 39-471 (490)
16 3hym_B Cell division cycle pro 100.0 1.4E-26 4.7E-31 223.2 30.1 285 5-351 21-306 (330)
17 4g1t_A Interferon-induced prot 100.0 4.9E-27 1.7E-31 238.7 26.6 410 19-495 24-464 (472)
18 1fch_A Peroxisomal targeting s 100.0 9.4E-27 3.2E-31 228.3 23.5 310 15-456 34-359 (368)
19 1fch_A Peroxisomal targeting s 99.9 1E-26 3.5E-31 228.0 22.4 329 19-490 14-359 (368)
20 4eqf_A PEX5-related protein; a 99.9 5E-25 1.7E-29 216.1 23.4 275 103-494 68-356 (365)
21 3cv0_A Peroxisome targeting si 99.9 8.9E-25 3E-29 210.2 21.9 281 103-496 24-321 (327)
22 4eqf_A PEX5-related protein; a 99.9 1.3E-24 4.4E-29 213.2 20.6 263 8-341 67-353 (365)
23 2xm6_A Protein corresponding t 99.9 3.8E-22 1.3E-26 203.8 38.0 370 24-493 25-435 (490)
24 3cv0_A Peroxisome targeting si 99.9 3.5E-24 1.2E-28 206.0 20.7 266 7-343 22-314 (327)
25 3u4t_A TPR repeat-containing p 99.9 4.5E-23 1.6E-27 193.1 25.1 263 6-328 3-268 (272)
26 3u4t_A TPR repeat-containing p 99.9 2E-23 7E-28 195.5 19.9 250 103-472 6-266 (272)
27 2h6f_A Protein farnesyltransfe 99.9 2E-23 6.8E-28 204.7 20.5 250 7-328 98-366 (382)
28 2ooe_A Cleavage stimulation fa 99.9 6.3E-21 2.1E-25 196.7 40.1 415 4-493 9-495 (530)
29 3uq3_A Heat shock protein STI1 99.9 2E-23 6.8E-28 193.5 18.6 244 102-470 7-256 (258)
30 3mkr_A Coatomer subunit epsilo 99.9 2.7E-22 9.1E-27 190.1 25.7 264 108-466 7-274 (291)
31 2h6f_A Protein farnesyltransfe 99.9 8.1E-23 2.8E-27 200.3 22.0 245 102-473 99-365 (382)
32 2pl2_A Hypothetical conserved 99.9 9.5E-23 3.2E-27 184.7 19.8 197 5-233 4-211 (217)
33 3sf4_A G-protein-signaling mod 99.9 8.5E-22 2.9E-26 195.3 26.1 323 2-449 3-369 (406)
34 3mkr_A Coatomer subunit epsilo 99.9 1.3E-21 4.6E-26 185.2 24.0 258 12-348 5-268 (291)
35 2ooe_A Cleavage stimulation fa 99.9 8.7E-20 3E-24 188.2 38.6 387 29-494 2-458 (530)
36 3e4b_A ALGK; tetratricopeptide 99.9 3.5E-21 1.2E-25 194.2 25.9 382 10-490 7-421 (452)
37 2pl2_A Hypothetical conserved 99.9 4.9E-22 1.7E-26 180.0 17.7 195 101-341 6-211 (217)
38 3sf4_A G-protein-signaling mod 99.9 3.6E-21 1.2E-25 190.8 24.2 302 103-477 12-363 (406)
39 4a1s_A PINS, partner of inscut 99.9 7.1E-21 2.4E-25 189.4 25.1 287 103-461 51-377 (411)
40 3uq3_A Heat shock protein STI1 99.9 8.4E-21 2.9E-25 175.7 20.6 235 4-345 3-237 (258)
41 3ro2_A PINS homolog, G-protein 99.9 4.1E-20 1.4E-24 177.7 25.3 285 103-460 8-336 (338)
42 1xnf_A Lipoprotein NLPI; TPR, 99.9 6.4E-21 2.2E-25 178.5 18.9 257 10-338 9-269 (275)
43 4a1s_A PINS, partner of inscut 99.9 1.1E-20 3.6E-25 188.1 20.2 281 9-344 51-372 (411)
44 3ro2_A PINS homolog, G-protein 99.9 2.1E-20 7.3E-25 179.6 21.3 284 7-344 6-332 (338)
45 2q7f_A YRRB protein; TPR, prot 99.9 1.6E-20 5.6E-25 172.3 19.0 212 103-471 26-237 (243)
46 3vtx_A MAMA; tetratricopeptide 99.9 2.4E-20 8.2E-25 163.9 18.2 173 99-350 4-176 (184)
47 3vtx_A MAMA; tetratricopeptide 99.8 3.5E-20 1.2E-24 162.9 17.9 164 5-194 4-167 (184)
48 3ulq_A Response regulator aspa 99.8 7E-20 2.4E-24 180.8 21.7 251 103-459 106-371 (383)
49 3e4b_A ALGK; tetratricopeptide 99.8 1.9E-19 6.6E-24 181.4 24.6 346 104-490 7-387 (452)
50 1xnf_A Lipoprotein NLPI; TPR, 99.8 4.3E-20 1.5E-24 172.9 17.7 254 107-450 12-269 (275)
51 2ho1_A Type 4 fimbrial biogene 99.8 3.7E-19 1.3E-23 164.4 23.1 66 103-168 40-105 (252)
52 2q7f_A YRRB protein; TPR, prot 99.8 5.1E-20 1.7E-24 169.0 16.8 205 6-241 23-230 (243)
53 2vq2_A PILW, putative fimbrial 99.8 1.1E-18 3.7E-23 157.9 24.1 66 103-168 11-76 (225)
54 4abn_A Tetratricopeptide repea 99.8 9.4E-19 3.2E-23 177.5 24.3 212 113-482 81-313 (474)
55 1ouv_A Conserved hypothetical 99.8 2.4E-18 8.3E-23 161.2 24.5 230 100-464 6-259 (273)
56 2ho1_A Type 4 fimbrial biogene 99.8 1.9E-18 6.6E-23 159.6 20.9 202 7-239 38-244 (252)
57 4i17_A Hypothetical protein; T 99.8 1.9E-17 6.6E-22 150.6 26.5 212 100-437 7-224 (228)
58 2ond_A Cleavage stimulation fa 99.8 4E-18 1.4E-22 162.9 23.0 253 117-470 33-306 (308)
59 4abn_A Tetratricopeptide repea 99.8 5.3E-19 1.8E-23 179.3 16.7 196 6-233 102-318 (474)
60 1ouv_A Conserved hypothetical 99.8 1.1E-17 3.8E-22 156.7 24.5 215 83-352 19-259 (273)
61 3q15_A PSP28, response regulat 99.8 7.1E-18 2.4E-22 166.1 24.1 248 103-457 104-366 (378)
62 2vq2_A PILW, putative fimbrial 99.8 4.2E-18 1.4E-22 153.9 20.6 203 6-239 8-217 (225)
63 1xi4_A Clathrin heavy chain; a 99.8 8.4E-16 2.9E-20 165.5 39.9 391 12-454 991-1426(1630)
64 4i17_A Hypothetical protein; T 99.8 2E-18 7E-23 157.1 17.3 201 5-245 6-221 (228)
65 3ulq_A Response regulator aspa 99.8 2.7E-18 9.2E-23 169.4 19.3 246 10-343 107-367 (383)
66 3qky_A Outer membrane assembly 99.8 1.9E-18 6.4E-23 160.9 16.9 155 4-181 13-198 (261)
67 4ga2_A E3 SUMO-protein ligase 99.8 2.3E-19 8E-24 152.1 9.2 147 11-183 2-149 (150)
68 4gyw_A UDP-N-acetylglucosamine 99.8 2E-18 6.8E-23 182.1 17.4 164 7-196 10-173 (723)
69 4gyw_A UDP-N-acetylglucosamine 99.8 3.6E-18 1.2E-22 180.2 16.0 173 278-494 6-178 (723)
70 1xi4_A Clathrin heavy chain; a 99.8 1.9E-15 6.4E-20 162.9 36.4 303 3-343 1102-1427(1630)
71 3nf1_A KLC 1, kinesin light ch 99.8 4.2E-18 1.4E-22 162.1 14.7 265 103-459 30-310 (311)
72 1b89_A Protein (clathrin heavy 99.8 3.9E-18 1.3E-22 165.7 14.4 382 14-476 11-403 (449)
73 4ga2_A E3 SUMO-protein ligase 99.8 1.4E-18 4.9E-23 147.2 9.5 145 287-475 3-148 (150)
74 2pzi_A Probable serine/threoni 99.8 2.1E-17 7.2E-22 175.0 20.1 193 17-241 402-610 (681)
75 3qky_A Outer membrane assembly 99.7 3.5E-17 1.2E-21 152.3 18.0 175 280-495 14-229 (261)
76 1hz4_A MALT regulatory protein 99.7 8.7E-16 3E-20 150.6 28.3 279 8-343 16-321 (373)
77 2yhc_A BAMD, UPF0169 lipoprote 99.7 2E-16 6.7E-21 143.8 21.7 200 101-347 5-216 (225)
78 3q15_A PSP28, response regulat 99.7 1.3E-16 4.4E-21 157.0 21.1 244 9-310 104-365 (378)
79 2ond_A Cleavage stimulation fa 99.7 2.5E-16 8.6E-21 150.4 21.7 195 6-231 6-227 (308)
80 1hz4_A MALT regulatory protein 99.7 7.4E-16 2.5E-20 151.1 25.2 309 103-493 17-352 (373)
81 3as5_A MAMA; tetratricopeptide 99.7 1.4E-16 4.8E-21 139.0 17.3 168 1-194 1-170 (186)
82 3nf1_A KLC 1, kinesin light ch 99.7 6.2E-17 2.1E-21 153.9 16.0 167 8-194 29-221 (311)
83 2yhc_A BAMD, UPF0169 lipoprote 99.7 3.4E-16 1.2E-20 142.2 18.9 188 284-496 7-219 (225)
84 3urz_A Uncharacterized protein 99.7 4E-16 1.4E-20 139.9 19.0 170 100-315 4-191 (208)
85 3edt_B KLC 2, kinesin light ch 99.7 2.5E-16 8.7E-21 147.3 17.4 247 17-343 12-280 (283)
86 3urz_A Uncharacterized protein 99.7 4.5E-16 1.5E-20 139.5 17.9 185 6-240 4-190 (208)
87 3edt_B KLC 2, kinesin light ch 99.7 1.1E-16 3.8E-21 149.7 13.4 254 112-457 13-282 (283)
88 3as5_A MAMA; tetratricopeptide 99.7 7.4E-16 2.5E-20 134.4 16.5 167 284-494 11-177 (186)
89 1qqe_A Vesicular transport pro 99.7 1.5E-15 5.1E-20 143.8 19.6 227 21-347 32-272 (292)
90 2r5s_A Uncharacterized protein 99.7 7E-16 2.4E-20 134.3 15.4 164 4-194 4-170 (176)
91 1qqe_A Vesicular transport pro 99.7 4.8E-15 1.7E-19 140.3 21.3 207 9-240 40-273 (292)
92 2pzi_A Probable serine/threoni 99.7 1.9E-15 6.3E-20 160.1 17.8 211 34-271 388-602 (681)
93 3qou_A Protein YBBN; thioredox 99.6 3.5E-15 1.2E-19 140.8 17.1 163 6-194 117-281 (287)
94 4gco_A Protein STI-1; structur 99.6 8.5E-16 2.9E-20 125.7 11.0 119 32-176 5-123 (126)
95 1b89_A Protein (clathrin heavy 99.6 9.9E-15 3.4E-19 141.9 19.8 307 4-344 30-355 (449)
96 3gyz_A Chaperone protein IPGC; 99.6 2.3E-16 7.8E-21 133.1 6.7 127 16-168 12-138 (151)
97 4gco_A Protein STI-1; structur 99.6 1.4E-15 4.9E-20 124.4 9.6 119 308-470 6-124 (126)
98 3dra_A Protein farnesyltransfe 99.6 6E-14 2E-18 132.1 21.2 239 111-495 43-293 (306)
99 2r5s_A Uncharacterized protein 99.6 7E-15 2.4E-19 127.9 13.9 161 284-489 9-172 (176)
100 3gyz_A Chaperone protein IPGC; 99.6 1.5E-15 5E-20 128.1 6.6 117 302-462 23-139 (151)
101 4f3v_A ESX-1 secretion system 99.6 4.3E-14 1.5E-18 130.1 15.9 233 103-475 10-255 (282)
102 3qou_A Protein YBBN; thioredox 99.6 4.3E-14 1.5E-18 133.3 16.0 164 282-489 118-283 (287)
103 2fo7_A Synthetic consensus TPR 99.6 6.2E-14 2.1E-18 115.0 14.1 135 7-167 2-136 (136)
104 2ifu_A Gamma-SNAP; membrane fu 99.6 6E-14 2E-18 133.7 16.0 172 106-346 42-225 (307)
105 2vgx_A Chaperone SYCD; alterna 99.6 6.4E-15 2.2E-19 124.2 8.1 123 22-170 3-125 (148)
106 3dra_A Protein farnesyltransfe 99.5 4E-13 1.4E-17 126.5 20.3 139 17-181 43-193 (306)
107 2vsy_A XCC0866; transferase, g 99.5 6.4E-14 2.2E-18 145.5 16.4 151 19-195 2-155 (568)
108 3dss_A Geranylgeranyl transfer 99.5 2.6E-12 9E-17 121.6 24.2 164 297-494 126-308 (331)
109 2vsy_A XCC0866; transferase, g 99.5 1E-13 3.5E-18 144.0 15.5 164 259-468 3-169 (568)
110 2ifu_A Gamma-SNAP; membrane fu 99.5 4.3E-13 1.5E-17 127.8 17.5 140 284-463 79-230 (307)
111 2xcb_A PCRH, regulatory protei 99.5 2.5E-14 8.7E-19 119.6 7.5 121 26-172 4-124 (142)
112 1hh8_A P67PHOX, NCF-2, neutrop 99.5 1.5E-13 5.3E-18 123.0 13.2 134 7-169 7-156 (213)
113 1p5q_A FKBP52, FK506-binding p 99.5 5.4E-15 1.8E-19 142.8 3.2 122 102-228 149-285 (336)
114 2e2e_A Formate-dependent nitri 99.5 4.7E-14 1.6E-18 122.6 8.6 134 13-172 17-153 (177)
115 2vgx_A Chaperone SYCD; alterna 99.5 3.8E-14 1.3E-18 119.4 7.7 120 303-466 9-128 (148)
116 2fo7_A Synthetic consensus TPR 99.5 7E-13 2.4E-17 108.5 14.6 133 284-460 4-136 (136)
117 1p5q_A FKBP52, FK506-binding p 99.5 1.4E-14 4.8E-19 139.9 3.4 159 18-188 125-284 (336)
118 3mv2_B Coatomer subunit epsilo 99.5 2.2E-12 7.5E-17 120.2 17.7 189 300-495 85-287 (310)
119 2xcb_A PCRH, regulatory protei 99.5 1.2E-13 4.1E-18 115.4 8.2 123 303-469 6-128 (142)
120 2c2l_A CHIP, carboxy terminus 99.5 1.1E-12 3.6E-17 123.3 15.4 192 102-343 6-198 (281)
121 2hr2_A Hypothetical protein; a 99.4 1.6E-13 5.6E-18 114.3 8.3 114 7-168 12-136 (159)
122 2e2e_A Formate-dependent nitri 99.4 3.1E-13 1.1E-17 117.4 10.4 135 291-469 20-157 (177)
123 3rjv_A Putative SEL1 repeat pr 99.4 6.7E-12 2.3E-16 112.5 19.4 166 99-347 17-200 (212)
124 1a17_A Serine/threonine protei 99.4 1E-12 3.4E-17 112.3 12.9 129 8-162 15-145 (166)
125 4gcn_A Protein STI-1; structur 99.4 1.1E-12 3.6E-17 107.3 11.5 106 8-133 10-116 (127)
126 4f3v_A ESX-1 secretion system 99.4 4.8E-13 1.6E-17 123.1 9.9 211 11-233 12-234 (282)
127 2c2l_A CHIP, carboxy terminus 99.4 2.8E-12 9.5E-17 120.4 15.1 101 7-133 5-105 (281)
128 3rjv_A Putative SEL1 repeat pr 99.4 3.2E-12 1.1E-16 114.7 14.7 171 24-233 4-194 (212)
129 3mv2_B Coatomer subunit epsilo 99.4 1.6E-11 5.6E-16 114.3 19.6 250 8-349 15-287 (310)
130 4gcn_A Protein STI-1; structur 99.4 1.2E-12 4.2E-17 106.9 10.6 99 103-233 11-109 (127)
131 3upv_A Heat shock protein STI1 99.4 1.7E-12 5.8E-17 105.8 11.4 60 7-66 5-64 (126)
132 1hh8_A P67PHOX, NCF-2, neutrop 99.4 1.3E-11 4.4E-16 110.3 18.3 140 42-233 8-147 (213)
133 3u3w_A Transcriptional activat 99.4 1.2E-11 4.1E-16 116.8 18.9 175 103-343 78-265 (293)
134 4e6h_A MRNA 3'-END-processing 99.4 2.6E-09 9E-14 111.4 38.1 406 86-493 49-536 (679)
135 3upv_A Heat shock protein STI1 99.4 1.3E-12 4.5E-17 106.4 10.5 100 39-164 3-102 (126)
136 2lni_A Stress-induced-phosphop 99.4 1.9E-12 6.4E-17 106.0 11.4 117 6-148 16-132 (133)
137 1a17_A Serine/threonine protei 99.4 1E-11 3.5E-16 105.9 16.1 126 102-232 15-142 (166)
138 2qfc_A PLCR protein; TPR, HTH, 99.4 8.2E-12 2.8E-16 118.0 16.9 135 10-164 79-226 (293)
139 2qfc_A PLCR protein; TPR, HTH, 99.4 1.4E-11 4.9E-16 116.3 18.1 174 103-342 78-264 (293)
140 2vyi_A SGTA protein; chaperone 99.4 2.9E-12 1E-16 104.3 11.3 117 8-150 14-130 (131)
141 3sz7_A HSC70 cochaperone (SGT) 99.4 4.2E-12 1.4E-16 108.7 12.5 112 315-470 11-122 (164)
142 3dss_A Geranylgeranyl transfer 99.4 2.2E-10 7.7E-15 108.3 25.1 251 18-352 41-312 (331)
143 3u3w_A Transcriptional activat 99.4 6.1E-12 2.1E-16 118.8 14.0 134 12-165 81-227 (293)
144 2lni_A Stress-induced-phosphop 99.4 4E-12 1.4E-16 104.1 11.0 118 37-180 13-130 (133)
145 2xev_A YBGF; tetratricopeptide 99.4 1.4E-11 4.7E-16 100.5 14.1 70 103-172 42-114 (129)
146 1zu2_A Mitochondrial import re 99.4 3.1E-12 1E-16 106.4 10.1 106 16-171 12-128 (158)
147 2fbn_A 70 kDa peptidylprolyl i 99.3 4.9E-12 1.7E-16 112.0 11.7 163 13-188 11-176 (198)
148 3q7a_A Farnesyltransferase alp 99.3 7.1E-11 2.4E-15 112.2 19.8 142 16-183 64-216 (349)
149 3sz7_A HSC70 cochaperone (SGT) 99.3 1.3E-11 4.4E-16 105.7 13.4 94 102-195 13-106 (164)
150 4e6h_A MRNA 3'-END-processing 99.3 1.2E-08 4.1E-13 106.5 37.7 67 4-70 62-133 (679)
151 2fbn_A 70 kDa peptidylprolyl i 99.3 2.8E-12 9.7E-17 113.5 8.9 120 103-227 41-176 (198)
152 2vyi_A SGTA protein; chaperone 99.3 2.7E-11 9.1E-16 98.5 13.7 117 102-223 14-130 (131)
153 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 9.5E-13 3.2E-17 132.5 5.4 159 18-188 246-405 (457)
154 1hxi_A PEX5, peroxisome target 99.3 6.2E-12 2.1E-16 101.7 8.8 100 397-496 21-120 (121)
155 1wao_1 Serine/threonine protei 99.3 1.1E-12 3.7E-17 132.7 5.3 126 7-158 7-134 (477)
156 2hr2_A Hypothetical protein; a 99.3 7.9E-12 2.7E-16 104.2 9.3 103 397-499 15-140 (159)
157 1na0_A Designed protein CTPR3; 99.3 3.5E-11 1.2E-15 96.9 12.7 72 104-175 47-118 (125)
158 1dce_A Protein (RAB geranylger 99.3 4.1E-11 1.4E-15 123.3 16.2 204 112-460 40-271 (567)
159 3rkv_A Putative peptidylprolyl 99.3 2.4E-11 8.4E-16 103.7 12.3 93 103-195 14-124 (162)
160 3q7a_A Farnesyltransferase alp 99.3 3.8E-10 1.3E-14 107.2 21.5 234 106-346 60-334 (349)
161 3rkv_A Putative peptidylprolyl 99.3 6.7E-12 2.3E-16 107.2 8.6 123 8-180 13-144 (162)
162 1hxi_A PEX5, peroxisome target 99.3 2.3E-11 7.8E-16 98.3 11.3 90 103-192 20-109 (121)
163 1na0_A Designed protein CTPR3; 99.3 2.8E-11 9.5E-16 97.5 11.8 116 7-148 10-125 (125)
164 3q49_B STIP1 homology and U bo 99.3 1.2E-11 4.1E-16 102.0 9.7 63 104-166 47-109 (137)
165 3gw4_A Uncharacterized protein 99.3 1.3E-10 4.6E-15 102.6 17.1 164 16-232 2-172 (203)
166 2kck_A TPR repeat; tetratricop 99.3 1.4E-11 4.7E-16 97.3 9.5 107 36-168 2-111 (112)
167 3q49_B STIP1 homology and U bo 99.3 9.7E-11 3.3E-15 96.5 14.9 96 100-195 9-104 (137)
168 1elw_A TPR1-domain of HOP; HOP 99.3 2.5E-11 8.6E-16 96.7 10.9 109 7-175 5-113 (118)
169 4b4t_Q 26S proteasome regulato 99.3 1.7E-10 5.7E-15 115.1 18.7 208 4-231 2-240 (434)
170 2dba_A Smooth muscle cell asso 99.3 1.2E-10 4E-15 97.1 14.6 120 35-177 23-142 (148)
171 1elw_A TPR1-domain of HOP; HOP 99.2 2.1E-10 7.2E-15 91.2 15.1 94 102-195 6-99 (118)
172 4b4t_Q 26S proteasome regulato 99.2 2.6E-10 8.8E-15 113.7 18.7 207 102-342 6-243 (434)
173 1zu2_A Mitochondrial import re 99.2 1.6E-11 5.5E-16 102.0 8.1 109 292-468 13-132 (158)
174 1wao_1 Serine/threonine protei 99.2 5.8E-12 2E-16 127.3 6.2 134 286-463 11-157 (477)
175 2kck_A TPR repeat; tetratricop 99.2 6.5E-11 2.2E-15 93.4 10.9 107 311-461 2-111 (112)
176 2xev_A YBGF; tetratricopeptide 99.2 1.9E-10 6.5E-15 93.6 14.0 92 103-194 5-102 (129)
177 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 9.4E-11 3.2E-15 117.9 14.6 123 102-229 270-407 (457)
178 2dba_A Smooth muscle cell asso 99.2 9E-11 3.1E-15 97.9 12.1 115 6-146 28-145 (148)
179 3ro3_A PINS homolog, G-protein 99.2 5E-11 1.7E-15 100.8 9.1 139 7-165 10-160 (164)
180 2if4_A ATFKBP42; FKBP-like, al 99.2 5.6E-12 1.9E-16 121.6 3.3 145 8-195 181-326 (338)
181 3k9i_A BH0479 protein; putativ 99.2 4.8E-11 1.6E-15 95.8 7.6 70 103-172 30-99 (117)
182 1ihg_A Cyclophilin 40; ppiase 99.2 8.6E-11 2.9E-15 114.6 10.8 88 103-190 276-363 (370)
183 3gw4_A Uncharacterized protein 99.2 7.1E-10 2.4E-14 97.9 15.6 166 111-342 3-174 (203)
184 1ihg_A Cyclophilin 40; ppiase 99.2 4.1E-10 1.4E-14 109.7 15.1 123 102-229 225-363 (370)
185 1elr_A TPR2A-domain of HOP; HO 99.2 4.3E-10 1.5E-14 91.2 12.8 123 6-148 4-126 (131)
186 1dce_A Protein (RAB geranylger 99.1 3.7E-10 1.3E-14 116.2 14.3 156 277-476 59-241 (567)
187 3k9i_A BH0479 protein; putativ 99.1 3.2E-11 1.1E-15 96.8 4.1 89 407-495 4-95 (117)
188 1elr_A TPR2A-domain of HOP; HO 99.1 5.7E-10 1.9E-14 90.5 11.5 66 102-167 6-71 (131)
189 2l6j_A TPR repeat-containing p 99.1 1.2E-10 4.2E-15 91.9 6.9 86 102-187 6-97 (111)
190 2if4_A ATFKBP42; FKBP-like, al 99.1 1.9E-10 6.5E-15 110.9 8.7 127 102-233 181-325 (338)
191 3ro3_A PINS homolog, G-protein 99.0 1.7E-09 5.9E-14 91.1 10.8 130 103-232 12-154 (164)
192 1na3_A Designed protein CTPR2; 99.0 3E-09 1E-13 80.4 11.0 79 102-180 11-89 (91)
193 2l6j_A TPR repeat-containing p 99.0 2.7E-10 9.1E-15 89.9 3.9 90 397-486 8-103 (111)
194 2kc7_A BFR218_protein; tetratr 98.9 3.1E-09 1.1E-13 82.0 6.8 91 398-496 5-96 (99)
195 1na3_A Designed protein CTPR2; 98.9 8.2E-09 2.8E-13 77.9 8.5 77 397-473 13-89 (91)
196 2uy1_A Cleavage stimulation fa 98.8 4.1E-06 1.4E-10 84.6 29.5 182 298-485 196-378 (493)
197 2kc7_A BFR218_protein; tetratr 98.8 1.7E-08 5.7E-13 77.8 9.2 68 104-171 4-72 (99)
198 2kat_A Uncharacterized protein 98.8 1.1E-08 3.9E-13 81.3 7.3 81 412-492 4-84 (115)
199 3ma5_A Tetratricopeptide repea 98.8 2.1E-08 7.1E-13 77.6 7.7 68 100-167 7-74 (100)
200 3ma5_A Tetratricopeptide repea 98.7 1.2E-08 4.2E-13 78.9 6.2 89 396-499 10-98 (100)
201 2kat_A Uncharacterized protein 98.7 5.4E-08 1.8E-12 77.3 9.7 76 118-193 3-78 (115)
202 3n71_A Histone lysine methyltr 98.7 1E-07 3.5E-12 95.7 13.1 127 13-161 316-462 (490)
203 3n71_A Histone lysine methyltr 98.7 2.1E-07 7.1E-12 93.5 14.6 129 104-232 313-460 (490)
204 1klx_A Cysteine rich protein B 98.7 2.3E-07 7.7E-12 76.5 11.7 112 19-164 8-127 (138)
205 1pc2_A Mitochondria fission pr 98.6 2.6E-07 9E-12 75.8 11.5 75 103-177 35-114 (152)
206 2v5f_A Prolyl 4-hydroxylase su 98.6 3.6E-07 1.2E-11 71.1 11.1 75 100-174 5-86 (104)
207 3ly7_A Transcriptional activat 98.5 2.8E-06 9.6E-11 80.5 15.7 141 12-173 202-348 (372)
208 2v5f_A Prolyl 4-hydroxylase su 98.5 4.6E-07 1.6E-11 70.5 8.5 74 395-468 7-87 (104)
209 3bee_A Putative YFRE protein; 98.5 6.9E-07 2.4E-11 67.7 9.0 70 100-169 6-78 (93)
210 3bee_A Putative YFRE protein; 98.3 1.2E-06 4.3E-11 66.2 7.1 67 396-462 9-78 (93)
211 1klx_A Cysteine rich protein B 98.3 1E-05 3.5E-10 66.4 12.9 108 113-233 8-123 (138)
212 3u64_A Protein TP_0956; tetrat 98.3 4.5E-05 1.5E-09 69.4 17.1 82 114-195 177-267 (301)
213 2uy1_A Cleavage stimulation fa 98.2 0.00016 5.3E-09 73.0 22.5 159 9-169 173-355 (493)
214 1pc2_A Mitochondria fission pr 98.2 3.7E-06 1.3E-10 69.0 8.0 78 393-470 32-114 (152)
215 3u64_A Protein TP_0956; tetrat 98.2 7.9E-05 2.7E-09 67.7 16.5 129 219-347 133-272 (301)
216 3qww_A SET and MYND domain-con 98.1 2.5E-05 8.4E-10 77.1 12.0 93 109-232 307-407 (433)
217 3qwp_A SET and MYND domain-con 98.1 1.8E-05 6.3E-10 78.1 11.0 112 14-147 295-426 (429)
218 3qwp_A SET and MYND domain-con 98.0 2.4E-05 8.1E-10 77.3 11.3 58 105-162 292-357 (429)
219 3ly7_A Transcriptional activat 98.0 7.8E-05 2.7E-09 70.7 13.8 73 399-473 283-355 (372)
220 1nzn_A CGI-135 protein, fissio 98.0 1.3E-05 4.3E-10 63.3 6.9 76 396-471 38-118 (126)
221 3o48_A Mitochondria fission 1 98.0 2.2E-05 7.5E-10 62.0 8.0 77 396-472 43-123 (134)
222 3qww_A SET and MYND domain-con 98.0 5.7E-05 1.9E-09 74.5 12.5 68 103-170 343-423 (433)
223 1nzn_A CGI-135 protein, fissio 97.9 3E-05 1E-09 61.1 8.1 77 101-177 36-117 (126)
224 1y8m_A FIS1; mitochondria, unk 97.9 4.3E-05 1.5E-09 61.1 8.7 75 396-470 42-120 (144)
225 3o48_A Mitochondria fission 1 97.8 0.00021 7.3E-09 56.4 10.7 78 100-177 40-121 (134)
226 4g26_A Pentatricopeptide repea 97.8 0.00026 8.8E-09 71.5 14.4 165 210-377 29-202 (501)
227 1y8m_A FIS1; mitochondria, unk 97.7 0.00035 1.2E-08 55.9 11.0 78 100-177 39-120 (144)
228 4g26_A Pentatricopeptide repea 97.7 0.0039 1.3E-07 62.8 21.1 162 105-311 31-205 (501)
229 3ffl_A Anaphase-promoting comp 97.1 0.0032 1.1E-07 51.9 10.1 119 103-240 23-157 (167)
230 3ffl_A Anaphase-promoting comp 97.0 0.002 6.9E-08 53.0 7.7 61 8-68 65-150 (167)
231 4h7y_A Dual specificity protei 96.7 0.018 6.1E-07 46.4 10.8 115 35-169 8-129 (161)
232 3kae_A CDC27, possible protein 96.6 0.22 7.6E-06 40.8 16.4 111 7-135 34-149 (242)
233 3mkq_B Coatomer subunit alpha; 96.2 0.17 6E-06 42.3 14.4 56 5-68 7-62 (177)
234 3mkq_A Coatomer beta'-subunit; 95.7 0.2 6.9E-06 53.4 16.3 45 14-63 607-652 (814)
235 4h7y_A Dual specificity protei 95.4 0.14 4.7E-06 41.3 10.0 119 310-465 8-132 (161)
236 3txn_A 26S proteasome regulato 95.3 1.9 6.3E-05 41.4 19.4 132 208-342 20-166 (394)
237 3kae_A CDC27, possible protein 95.2 1.1 3.7E-05 36.8 17.8 124 16-173 12-153 (242)
238 3mkq_A Coatomer beta'-subunit; 94.7 0.55 1.9E-05 50.0 15.8 145 12-237 635-779 (814)
239 4gns_B Protein CSD3, chitin bi 94.6 0.25 8.6E-06 51.6 12.1 56 105-160 342-397 (754)
240 1qsa_A Protein (soluble lytic 94.3 5.4 0.00019 40.8 23.0 58 286-343 290-347 (618)
241 3mkq_B Coatomer subunit alpha; 93.5 1.7 5.7E-05 36.3 12.8 48 290-342 14-61 (177)
242 3txn_A 26S proteasome regulato 93.5 5.5 0.00019 38.1 19.1 58 105-162 104-167 (394)
243 1zbp_A Hypothetical protein VP 92.7 0.31 1.1E-05 43.6 7.6 62 109-170 6-67 (273)
244 4gns_B Protein CSD3, chitin bi 92.0 0.23 8E-06 51.9 6.9 56 13-68 344-399 (754)
245 1qsa_A Protein (soluble lytic 90.1 18 0.00062 36.9 22.5 88 286-375 257-344 (618)
246 1zbp_A Hypothetical protein VP 89.6 1 3.5E-05 40.3 7.7 55 14-68 5-59 (273)
247 3spa_A Mtrpol, DNA-directed RN 89.5 3 0.0001 44.9 12.3 92 103-196 130-229 (1134)
248 3spa_A Mtrpol, DNA-directed RN 89.4 0.84 2.9E-05 49.0 8.1 58 286-343 170-229 (1134)
249 1ya0_A SMG-7 transcript varian 89.0 1.8 6.1E-05 43.0 9.8 69 103-171 155-223 (497)
250 2ff4_A Probable regulatory pro 88.9 1.2 4.1E-05 42.9 8.4 59 103-161 174-232 (388)
251 4b4t_R RPN7, 26S proteasome re 88.9 1.2 4.2E-05 43.5 8.6 58 9-66 134-194 (429)
252 1wy6_A Hypothetical protein ST 88.7 7.7 0.00026 30.7 11.0 51 406-456 104-154 (172)
253 3lvg_A Clathrin heavy chain 1; 88.7 0.0014 4.8E-08 63.5 -12.0 219 206-453 53-288 (624)
254 2ff4_A Probable regulatory pro 88.5 0.78 2.7E-05 44.2 6.8 56 11-66 176-231 (388)
255 4b4t_P 26S proteasome regulato 88.2 20 0.00068 34.9 21.6 193 113-342 29-245 (445)
256 4b4t_R RPN7, 26S proteasome re 87.9 2.9 9.8E-05 40.8 10.5 91 103-193 134-233 (429)
257 4fhn_B Nucleoporin NUP120; pro 87.0 2.1 7.1E-05 47.7 9.9 123 106-233 818-964 (1139)
258 4b4t_P 26S proteasome regulato 86.3 1.9 6.7E-05 42.2 8.3 102 10-130 141-248 (445)
259 3lpz_A GET4 (YOR164C homolog); 85.8 22 0.00076 33.0 22.1 42 298-339 119-160 (336)
260 3lvg_A Clathrin heavy chain 1; 84.6 0.00088 3E-08 64.9 -15.8 145 38-233 52-196 (624)
261 4fhn_B Nucleoporin NUP120; pro 83.5 7.4 0.00025 43.2 12.2 139 11-159 817-963 (1139)
262 1wfd_A Hypothetical protein 15 78.0 2.3 8E-05 31.2 3.9 49 445-499 40-91 (93)
263 4ady_A RPN2, 26S proteasome re 77.4 82 0.0028 33.8 30.2 24 9-32 73-96 (963)
264 1ya0_A SMG-7 transcript varian 75.2 6.2 0.00021 39.1 7.4 71 397-467 156-226 (497)
265 1wy6_A Hypothetical protein ST 75.0 10 0.00035 30.0 6.9 61 103-163 93-154 (172)
266 4b4t_S RPN3, 26S proteasome re 70.7 2.6 9E-05 41.6 3.4 137 16-168 146-304 (523)
267 2wpv_A GET4, UPF0363 protein Y 68.8 40 0.0014 30.9 10.7 116 208-338 34-157 (312)
268 3bu8_A Telomeric repeat-bindin 56.8 74 0.0025 27.2 9.1 97 402-499 123-228 (235)
269 2w2u_A Hypothetical P60 katani 55.6 9.8 0.00034 27.1 3.2 13 409-421 16-28 (83)
270 2v6y_A AAA family ATPase, P60 53.5 11 0.00038 26.8 3.2 13 409-421 8-20 (83)
271 4a5x_A MITD1, MIT domain-conta 53.2 27 0.00091 25.0 5.2 11 407-417 30-40 (86)
272 2rpa_A Katanin P60 ATPase-cont 52.5 7 0.00024 27.5 1.9 21 45-65 17-37 (78)
273 3ax2_A Mitochondrial import re 49.3 43 0.0015 23.1 5.5 33 103-135 20-52 (73)
274 4b4t_S RPN3, 26S proteasome re 48.5 25 0.00085 34.8 5.8 70 41-133 232-303 (523)
275 2cpt_A SKD1 protein, vacuolar 47.8 29 0.00099 26.5 5.0 13 409-421 15-27 (117)
276 3ax2_A Mitochondrial import re 47.5 39 0.0013 23.3 5.0 31 12-42 23-53 (73)
277 3t5x_A PCI domain-containing p 46.6 26 0.00088 29.9 5.1 29 10-38 18-46 (203)
278 2rpa_A Katanin P60 ATPase-cont 46.4 20 0.00069 25.1 3.5 27 103-129 15-41 (78)
279 4gq2_M Nucleoporin NUP120; bet 42.9 3E+02 0.01 29.7 13.8 52 287-342 816-867 (950)
280 4ady_A RPN2, 26S proteasome re 41.8 3.6E+02 0.012 29.0 27.0 193 137-343 379-588 (963)
281 3t5x_A PCI domain-containing p 39.8 55 0.0019 27.8 6.1 31 103-133 17-47 (203)
282 2w2u_A Hypothetical P60 katani 39.2 38 0.0013 24.0 4.1 25 103-127 22-46 (83)
283 2vkj_A TM1634; membrane protei 38.1 61 0.0021 23.1 4.8 39 400-438 60-101 (106)
284 1om2_A Protein (mitochondrial 37.1 70 0.0024 23.3 5.3 33 103-135 23-55 (95)
285 2v6y_A AAA family ATPase, P60 36.9 43 0.0015 23.7 4.1 23 105-127 16-38 (83)
286 2crb_A Nuclear receptor bindin 36.5 46 0.0016 24.0 4.0 24 104-127 19-42 (97)
287 2wvi_A Mitotic checkpoint seri 36.4 1.7E+02 0.0058 23.8 8.1 48 117-164 77-126 (164)
288 4gq2_M Nucleoporin NUP120; bet 35.7 4.5E+02 0.015 28.3 16.0 107 11-130 815-927 (950)
289 4a1g_A Mitotic checkpoint seri 35.4 1.7E+02 0.0057 23.5 7.8 45 119-163 84-130 (152)
290 2vkj_A TM1634; membrane protei 34.2 78 0.0027 22.6 4.8 44 103-146 56-102 (106)
291 2crb_A Nuclear receptor bindin 32.9 29 0.00099 25.0 2.5 23 432-454 20-42 (97)
292 2ynq_A ESSB; membrane protein, 31.6 2E+02 0.007 23.1 8.3 23 397-419 77-99 (161)
293 3esl_A Checkpoint serine/threo 31.4 1.8E+02 0.0062 24.5 7.7 50 295-344 93-144 (202)
294 4a5x_A MITD1, MIT domain-conta 31.1 60 0.0021 23.1 4.1 25 104-128 20-44 (86)
295 3t5v_B Nuclear mRNA export pro 30.3 48 0.0016 32.3 4.6 63 105-167 181-254 (455)
296 2ijq_A Hypothetical protein; s 29.9 1.8E+02 0.0061 23.6 7.2 59 8-66 34-101 (161)
297 2ijq_A Hypothetical protein; s 29.5 2.1E+02 0.0072 23.1 7.6 60 103-162 35-103 (161)
298 3ph0_C ASCG; type III secretio 28.6 1.1E+02 0.0039 19.7 4.5 41 295-335 20-60 (61)
299 4aez_C MAD3, mitotic spindle c 28.3 2.1E+02 0.0073 24.5 7.8 47 117-163 131-179 (223)
300 3bqo_A Telomeric repeat-bindin 27.1 1.4E+02 0.0047 25.2 6.0 34 401-434 125-158 (211)
301 2dl1_A Spartin; SPG20, MIT, st 26.6 76 0.0026 24.1 4.0 18 406-423 16-33 (116)
302 3t5v_B Nuclear mRNA export pro 25.5 51 0.0017 32.1 3.8 58 287-344 182-249 (455)
303 2cfu_A SDSA1; SDS-hydrolase, l 25.4 1E+02 0.0035 31.7 6.3 47 103-149 452-498 (658)
304 2v6x_A Vacuolar protein sortin 25.4 85 0.0029 22.1 4.1 24 105-128 18-41 (85)
305 1wfd_A Hypothetical protein 15 25.3 85 0.0029 22.7 4.1 24 104-127 19-42 (93)
306 2ynq_A ESSB; membrane protein, 24.2 2.8E+02 0.0095 22.4 7.1 17 143-159 82-98 (161)
307 2cfu_A SDSA1; SDS-hydrolase, l 24.1 82 0.0028 32.4 5.3 49 9-57 452-500 (658)
308 1om2_A Protein (mitochondrial 23.6 59 0.002 23.7 2.9 28 12-39 26-53 (95)
309 3mv2_A Coatomer subunit alpha; 23.0 4.4E+02 0.015 24.1 11.3 39 131-169 203-242 (325)
310 3eab_A Spastin; spastin, MIT, 22.8 70 0.0024 23.0 3.1 18 406-423 10-27 (89)
311 2cpt_A SKD1 protein, vacuolar 22.5 1E+02 0.0035 23.4 4.3 23 105-127 23-45 (117)
312 3esl_A Checkpoint serine/threo 22.3 1.3E+02 0.0046 25.3 5.3 49 409-457 95-145 (202)
313 3bu8_A Telomeric repeat-bindin 21.9 84 0.0029 26.8 3.9 35 107-141 121-155 (235)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=8.1e-39 Score=317.37 Aligned_cols=382 Identities=14% Similarity=0.000 Sum_probs=325.1
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHH
Q psy12000 10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSL 89 (507)
Q Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (507)
+.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++....+.
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~----------------- 65 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL----------------- 65 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------------
Confidence 357899999999999999999999999999999999999999999999999988776432221
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 90 MEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 90 ~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
.+..+..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|++.|++++..+|++..
T Consensus 66 ---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 136 (388)
T 1w3b_A 66 ---------LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136 (388)
T ss_dssp ---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH
T ss_pred ---------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 12337789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHH
Q psy12000 170 ALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAV 246 (507)
Q Consensus 170 a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~ 246 (507)
++..++.++...|++++|...++++++ ..|..+.++.++|.++...|++++|+..+++. .|.++..+...|.
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 211 (388)
T 1w3b_A 137 VRSDLGNLLKALGRLEEAKACYLKAIE-----TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 999999999999999999999998763 34566789999999999999999999988764 6777777777777
Q ss_pred HHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHH
Q psy12000 247 VQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKC 326 (507)
Q Consensus 247 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~ 326 (507)
++...|+...+...++++... .|+...++..+|.++...|++++|+..++++....|+++.++.++|.++.
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSL---------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK 282 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh---------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 777777665555555555432 23334456678889999999999999999888888888888888999999
Q ss_pred hhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhH
Q psy12000 327 ALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLR 406 (507)
Q Consensus 327 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 406 (507)
..|++++|+..|++++...|.+...+ ..++.++...
T Consensus 283 ~~g~~~~A~~~~~~al~~~p~~~~~~--------------------------------------------~~l~~~~~~~ 318 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLCPTHADSL--------------------------------------------NNLANIKREQ 318 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHCTTCHHHH--------------------------------------------HHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhhCcccHHHH--------------------------------------------HHHHHHHHHc
Confidence 99999999999988875544322111 2234566777
Q ss_pred hhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcC
Q psy12000 407 CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 475 (507)
Q Consensus 407 ~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~ 475 (507)
|++++|+..|+++++..|+++.++..+|.+|.+.|++++|+..|+++++++|+++.+++.+|.++..++
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999999999999999999877654
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=8.9e-35 Score=288.28 Aligned_cols=366 Identities=13% Similarity=-0.045 Sum_probs=303.7
Q ss_pred HHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy12000 45 NIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYK 124 (507)
Q Consensus 45 ~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~ 124 (507)
.+|..++..|++++|+..++++....+.+ +..+..+|.++...|++++|+..++
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~--------------------------~~~~~~l~~~~~~~~~~~~a~~~~~ 57 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDN--------------------------TGVLLLLSSIHFQCRRLDRSAHFST 57 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTC--------------------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------------------------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46888999999999999887654322221 2225678899999999999999999
Q ss_pred HHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCC
Q psy12000 125 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLID 204 (507)
Q Consensus 125 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~ 204 (507)
+++..+|.++.+++.+|.++...|++++|++.|++++..+|++..++..++.++...|++++|...++++++ ..|
T Consensus 58 ~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----~~p 132 (388)
T 1w3b_A 58 LAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ-----YNP 132 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH-----HCT
T ss_pred HHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988753 245
Q ss_pred ChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccch
Q psy12000 205 VIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTV 281 (507)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 281 (507)
..+.++..+|.++...|++++|+..+.+. .|.++..+...|.++...|+...+...++++++. .|+..
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~p~~~ 203 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL---------DPNFL 203 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---------CTTCH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCCcH
Confidence 56678899999999999999999988764 6666666766777776666554444444444431 23345
Q ss_pred hhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCc
Q psy12000 282 PGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSP 361 (507)
Q Consensus 282 ~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 361 (507)
.++..+|.++...|++++|+..++++....|++..++.++|.++..+|++++|+..|++++...|.....+
T Consensus 204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--------- 274 (388)
T 1w3b_A 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY--------- 274 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH---------
Confidence 56667888888888888888888888888888877888888888888888888888888876554322111
Q ss_pred cchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccc
Q psy12000 362 SRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD 441 (507)
Q Consensus 362 ~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g 441 (507)
..++.++...|++++|+..|+++++..|+++..+..+|.++.+.|
T Consensus 275 -----------------------------------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 275 -----------------------------------CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp -----------------------------------HHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred -----------------------------------HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Confidence 234456677799999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000 442 YYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR 494 (507)
Q Consensus 442 ~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
++++|+..++++++.+|+++.+++.++.++...++.+.|...|++.++..|.+
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999999999999999999999976
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-34 Score=304.13 Aligned_cols=433 Identities=15% Similarity=0.063 Sum_probs=293.9
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000 9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS 88 (507)
Q Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (507)
...++..+...|++++|+..|++++...|+. ..++.+|.++...|++++|+..++++...+...
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------------- 150 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSS--------------- 150 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCH---------------
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccch---------------
Confidence 3457889999999999999999999988855 678899999999999999999999885322211
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC----------------CchhHHHHHHHHHHHhcCCHHH
Q psy12000 89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH----------------KDLLALNVYGAMCYYKLDYYDV 152 (507)
Q Consensus 89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----------------p~~~~~~~~la~~~~~~g~~~~ 152 (507)
..+..+|.+|...|++++|+..|+++.... |.+..+++.+|.+|.+.|++++
T Consensus 151 ------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 151 ------------ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp ------------HHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred ------------hHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 123455666666666666666665432222 2235556666666666666666
Q ss_pred HHHHHHHHHhcCCCcHHHHHHH--------------------------------------hhhhhhccChHHHHHhhHHH
Q psy12000 153 SQEQVAMYLAQKPTSRIALNLK--------------------------------------ACNTYKLFTSRAAENQLKPI 194 (507)
Q Consensus 153 A~~~~~~~l~~~p~~~~a~~~~--------------------------------------a~~~~~~~~~~~A~~~l~~~ 194 (507)
|++.|++++..+|++..++..+ +..+.+.|++++|...++.+
T Consensus 219 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 219 AKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 6666666666666655543322 33444667777787777654
Q ss_pred HHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHh
Q psy12000 195 LVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLV 271 (507)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 271 (507)
.+ . +..+.++..++..|...|++++|+..+.++ .|.++..+...+.++...|+.. +|..+++.+
T Consensus 299 ~~-----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-------~A~~~~~~~ 365 (597)
T 2xpi_A 299 NG-----L-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN-------KLYLISNDL 365 (597)
T ss_dssp TT-----G-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHH-------HHHHHHHHH
T ss_pred hc-----C-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHH-------HHHHHHHHH
Confidence 21 1 345567778888888888888888777654 4555555656666666665443 444444332
Q ss_pred CCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhh
Q psy12000 272 GSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYV 351 (507)
Q Consensus 272 ~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 351 (507)
.. ..++....+..+|.+|.+.|++++|+.+|+++....|++..++..+|.+|.+.|++++|++.|++++...+.+...
T Consensus 366 ~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 443 (597)
T 2xpi_A 366 VD--RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP 443 (597)
T ss_dssp HH--HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHH
T ss_pred Hh--hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence 21 1123344455678888888888888888888777777777677778888888888888888888776555444333
Q ss_pred hhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhc------CCc
Q psy12000 352 YISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD------HKD 425 (507)
Q Consensus 352 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~------~p~ 425 (507)
+. .++.++...|++++|...+.++... -...+.....++.++...|++++|+..|+++++. +|+
T Consensus 444 ~~-~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~ 513 (597)
T 2xpi_A 444 YL-FLGMQHMQLGNILLANEYLQSSYAL---------FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513 (597)
T ss_dssp HH-HHHHHHHHHTCHHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred HH-HHHHHHHHcCCHHHHHHHHHHHHHh---------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh
Confidence 32 2455666667777776665543210 0011122344566777778888888888888776 555
Q ss_pred h-hhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000 426 L-LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR 494 (507)
Q Consensus 426 ~-~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
. ..++..+|.+|.+.|++++|++.++++++.+|+++.++..++.++...++.+.|...|+++++..|.+
T Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 514 PWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 4 56777788888888888888888888888888888888888888888888888888888888888876
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-33 Score=289.65 Aligned_cols=433 Identities=13% Similarity=0.049 Sum_probs=337.9
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE 86 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (507)
...+.+|.++...|++++|+..|++++.. |.++.++..++.+|...|++++|+..|++.............+. ....
T Consensus 118 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~ 194 (597)
T 2xpi_A 118 NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL--MQDG 194 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC------------CCCS
T ss_pred hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccc--cccc
Confidence 45667999999999999999999999765 66788999999999999999999999996532211000000000 0000
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHH------------------------
Q psy12000 87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAM------------------------ 142 (507)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~------------------------ 142 (507)
+ ....+..+..+|.+|...|++++|+..|++++..+|++..++..++.
T Consensus 195 ~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (597)
T 2xpi_A 195 G--------IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266 (597)
T ss_dssp S--------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG
T ss_pred c--------cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccc
Confidence 0 00112337789999999999999999999999999998887776643
Q ss_pred --------------HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhH
Q psy12000 143 --------------CYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPE 208 (507)
Q Consensus 143 --------------~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~ 208 (507)
+|.+.|++++|++.|++++.. |.+..+++.++.++.+.|++++|...++++.+ ..|....
T Consensus 267 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 340 (597)
T 2xpi_A 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILE-----IDPYNLD 340 (597)
T ss_dssp GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCCT
T ss_pred hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----cCcccHH
Confidence 455899999999999998877 77788888899999999999999999998763 1234556
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhh
Q psy12000 209 SRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQ 285 (507)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 285 (507)
++..++.++...|++++|+..+.++ .|.++..+...+.++...|+...+...++++.+. .+....++.
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~ 411 (597)
T 2xpi_A 341 VYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM---------DPQFGPAWI 411 (597)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---------CCCCHHHHH
Confidence 7889999999999999999988754 6777777777788887777655444444444331 223445667
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchh
Q psy12000 286 CMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAK 365 (507)
Q Consensus 286 ~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 365 (507)
.+|.++...|++++|+++|+++....|++..++..+|.+|.+.|++++|++.|++++...+.+...+. .++.++...|+
T Consensus 412 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~ 490 (597)
T 2xpi_A 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLN-ELGVVAFNKSD 490 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHhCC
Confidence 89999999999999999999999888988888889999999999999999999999866655544443 35778888888
Q ss_pred hhHHHHHHHHcCCcHHHHHHHHHhhhc----HHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccc
Q psy12000 366 TRLSFHLSHKLGDEKSLMEYHQKLEDS----LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD 441 (507)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g 441 (507)
+++|...+.+.... ....... ......++.++...|++++|+..|+++++.+|+++.++..+|.+|.+.|
T Consensus 491 ~~~A~~~~~~~~~~------~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 491 MQTAINHFQNALLL------VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHHHHHHHHHHHH------HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh------hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 99888777654211 0000001 1223456778888999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHhcCCCchhhhhHHHhhhh
Q psy12000 442 YYDVSQEQVAMYLAQKPTSRIALNLKACNTY 472 (507)
Q Consensus 442 ~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~ 472 (507)
++++|++.++++++++|+++.++..++.++-
T Consensus 565 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 565 IPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999998888753
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-33 Score=285.18 Aligned_cols=384 Identities=13% Similarity=0.081 Sum_probs=256.6
Q ss_pred cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000 6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD 85 (507)
Q Consensus 6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (507)
.+..+.+|.+++..|+|++|+..|+++++.+| ++.+++.+|.++...|++++|+..++++....+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------ 72 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY------------ 72 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH------------
Confidence 35667789999999999999999999999999 58899999999999999999999998875422221
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch--------------------------------
Q psy12000 86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL-------------------------------- 133 (507)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------------------------------- 133 (507)
+..++.+|.++...|++++|+..|++++...|.+
T Consensus 73 --------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 138 (514)
T 2gw1_A 73 --------------SKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATA 138 (514)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------
T ss_pred --------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2236778999999999999999999998887632
Q ss_pred -----------------------------------------------hHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-
Q psy12000 134 -----------------------------------------------LALNVYGAMCYYK---LDYYDVSQEQVAMYLA- 162 (507)
Q Consensus 134 -----------------------------------------------~~~~~~la~~~~~---~g~~~~A~~~~~~~l~- 162 (507)
..+++.+|.+++. .|++++|+..|++++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 218 (514)
T 2gw1_A 139 TPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARL 218 (514)
T ss_dssp ------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH
T ss_pred hhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Confidence 4445555555554 6666666666666665
Q ss_pred ----c--CCCc-------HHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHH
Q psy12000 163 ----Q--KPTS-------RIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDL 229 (507)
Q Consensus 163 ----~--~p~~-------~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 229 (507)
. +|++ ..++..+|.+++..|++++|...++++++ ..|. +.++..+|.++...|++++|+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-----~~~~-~~~~~~l~~~~~~~~~~~~A~~~ 292 (514)
T 2gw1_A 219 FEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-----LFPR-VNSYIYMALIMADRNDSTEYYNY 292 (514)
T ss_dssp HHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH-----HCCC-HHHHHHHHHHHHTSSCCTTGGGH
T ss_pred hhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----hCcc-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 3 3332 33455555555666666666666555432 1122 45556666666666666666555
Q ss_pred HHhc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHH
Q psy12000 230 IKNL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSS 306 (507)
Q Consensus 230 l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~ 306 (507)
+.+. .|.++..+...+.++...|+...+...+++++.. .+....++..+|.++...|++++|+.++++
T Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 363 (514)
T 2gw1_A 293 FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL---------DPENIFPYIQLACLAYRENKFDDCETLFSE 363 (514)
T ss_dssp HHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT---------CSSCSHHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5442 3444444444555555555443333333333221 111222344456666666666666666666
Q ss_pred hhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHH
Q psy12000 307 IKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYH 386 (507)
Q Consensus 307 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 386 (507)
+....|+++.+++.+|.++...|++++|+..|++++...+.+....
T Consensus 364 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------------------------------- 409 (514)
T 2gw1_A 364 AKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY---------------------------------- 409 (514)
T ss_dssp HHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS----------------------------------
T ss_pred HHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH----------------------------------
Confidence 6555555555555566666666666666666665543221110000
Q ss_pred HHhhhcHHHHHHHHHHHHh---HhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhh
Q psy12000 387 QKLEDSLEEQLCLASIHFL---RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA 463 (507)
Q Consensus 387 ~~l~~~~~~~~~l~~~~~~---~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a 463 (507)
........++.++.. .|++++|+..|++++...|+++.++..+|.+|.++|++++|+..++++++++|+++.+
T Consensus 410 ----~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 410 ----VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp ----SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred ----HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence 000022445667788 8999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHh
Q psy12000 464 LNLKAC 469 (507)
Q Consensus 464 ~~~~~~ 469 (507)
+..+..
T Consensus 486 ~~~~~~ 491 (514)
T 2gw1_A 486 LQAITF 491 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=6.3e-32 Score=279.12 Aligned_cols=406 Identities=15% Similarity=0.101 Sum_probs=247.6
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-chHHHHHH---h
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT-RLSFHLSH---K 82 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~~~~---~ 82 (507)
...+.+|.+++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..++++....+.. ..++.++. .
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 4557789999999999999999999999999999999999999999999999999999875433322 12222221 2
Q ss_pred cCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh----------------------------
Q psy12000 83 LGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL---------------------------- 134 (507)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---------------------------- 134 (507)
.++.+.+....+.+...|.........+...+...+|+..+++++...|...
T Consensus 106 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp HTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred cCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 2232222222222221111111111122222222333333333332211100
Q ss_pred ---------HHHHHHHHHH--------HhcCCHHHHHHHHHHHHhcCCCcHH-------HHHHHhhhhhhccChHHHHHh
Q psy12000 135 ---------ALNVYGAMCY--------YKLDYYDVSQEQVAMYLAQKPTSRI-------ALNLKACNTYKLFTSRAAENQ 190 (507)
Q Consensus 135 ---------~~~~~la~~~--------~~~g~~~~A~~~~~~~l~~~p~~~~-------a~~~~a~~~~~~~~~~~A~~~ 190 (507)
.....++.++ ...|++++|+..+++++..+|+++. ++..++.++...|++++|...
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 265 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVL 265 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 0111111111 1224666677777777766666644 344455555666666666666
Q ss_pred hHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHH
Q psy12000 191 LKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQAL 267 (507)
Q Consensus 191 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 267 (507)
++++++ ..|. +.++..+|.++...|++++|+..+.+. .|.++..+...|.++...|+...+...++++++.
T Consensus 266 ~~~~~~-----~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 266 LQESIN-----LHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHH-----HCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHh-----cCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 666542 1222 456666666666667777666666543 4555555555555555555443333333333321
Q ss_pred HHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCC
Q psy12000 268 FQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLK 347 (507)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~ 347 (507)
.++...++..+|.++...|++++|+.+++++....|+++.++.++|.++...|++++|+..|++++...+.
T Consensus 340 ---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 340 ---------NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp ---------CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 12223345567888888888888888888888888877777778888888888888888888887643321
Q ss_pred chhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhH----------hhHHHHHHHHH
Q psy12000 348 NDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLR----------CHYQEAIDIYK 417 (507)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~----------~~~~~Ai~~~~ 417 (507)
+...+... + ....++.++... |++++|+..|+
T Consensus 411 ~~~~~~~~-~-------------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~ 452 (537)
T 3fp2_A 411 QEKIHVGI-G-------------------------------------PLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452 (537)
T ss_dssp CSSCSSTT-H-------------------------------------HHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred chhhHHHH-H-------------------------------------HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH
Confidence 11111000 0 001223445555 99999999999
Q ss_pred HHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhh
Q psy12000 418 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN 465 (507)
Q Consensus 418 ~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 465 (507)
++++.+|+++.++..+|.+|.++|++++|+..|+++++..|+++....
T Consensus 453 ~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 453 KACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999999999999999999999998755
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-30 Score=267.89 Aligned_cols=408 Identities=11% Similarity=-0.021 Sum_probs=308.0
Q ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHH
Q psy12000 40 EDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEA 119 (507)
Q Consensus 40 ~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A 119 (507)
++.++.+|.+++..|++++|+..|+++....+. +..+..+|.++...|++++|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------------------~~~~~~la~~~~~~g~~~~A 58 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKED---------------------------PVFYSNLSACYVSVGDLKKV 58 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC---------------------------HHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc---------------------------HHHHHhHHHHHHHHhhHHHH
Confidence 467899999999999999999999887532221 22367889999999999999
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhH-------
Q psy12000 120 IDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLK------- 192 (507)
Q Consensus 120 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~------- 192 (507)
+..|++++..+|++..+++.+|.++..+|++++|+..|++++..+|.+...................+...+.
T Consensus 59 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 138 (514)
T 2gw1_A 59 VEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATA 138 (514)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998765432211111111111111111110
Q ss_pred ---------------------------HHHHhhCC-------CCCCChhHhHHHHHHHHHh---hccHHHHHHHHHhc--
Q psy12000 193 ---------------------------PILVSILP-------PLIDVIPESRLNLVIYHLK---QEEHQEAFDLIKNL-- 233 (507)
Q Consensus 193 ---------------------------~~~~~~~~-------~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~l~~~-- 233 (507)
... .... -..+..+.+++.+|..++. .|++++|+..+.+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 217 (514)
T 2gw1_A 139 TPTELSTQPAKERKDKQENLPSVTSMASFF-GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217 (514)
T ss_dssp ------------------CCCCHHHHHHHH-TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred hhhhccCChhhHHHhhccCCchhHHHHHHH-hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 000 0000 0013457889999998886 99999999888653
Q ss_pred --------CCCC-------hHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHH
Q psy12000 234 --------EPSV-------PQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFK 298 (507)
Q Consensus 234 --------~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 298 (507)
.|.+ +..+...|.++...|+. ++|+.+|+.+... .++ ..++..+|.++...|+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~A~~~~~~~l~~--~~~-~~~~~~l~~~~~~~~~~~ 287 (514)
T 2gw1_A 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP-------LGAHEDIKKAIEL--FPR-VNSYIYMALIMADRNDST 287 (514)
T ss_dssp HHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH-------HHHHHHHHHHHHH--CCC-HHHHHHHHHHHHTSSCCT
T ss_pred HhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHhh--Ccc-HHHHHHHHHHHHHCCCHH
Confidence 2222 22344455555555544 4555555443221 122 455667899999999999
Q ss_pred HHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCC
Q psy12000 299 DVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGD 378 (507)
Q Consensus 299 ~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 378 (507)
+|+.+++++....|++..++..+|.++...|++++|+..|++++...+.+...+ ..++.++...|+++.|...+.+...
T Consensus 288 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~ 366 (514)
T 2gw1_A 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPY-IQLACLAYRENKFDDCETLFSEAKR 366 (514)
T ss_dssp TGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHH-HHHHHHTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHH-HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999998888889999999999999999999999986655544333 2357788888888888776655321
Q ss_pred cHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhh------hHHHHHhhccc---cccchhHHHH
Q psy12000 379 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLA------LNVYGAMCYYK---LDYYDVSQEQ 449 (507)
Q Consensus 379 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~------~~~~la~~y~~---~g~~~~A~~~ 449 (507)
.....+.....++.++...|++++|+..|++++...|+++. ++..+|.+|.+ .|++++|+..
T Consensus 367 ---------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 367 ---------KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp ---------HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred ---------HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 01112223355677888889999999999999999888865 88899999999 9999999999
Q ss_pred HHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCc
Q psy12000 450 VAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRV 495 (507)
Q Consensus 450 ~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (507)
++++++.+|+++.++..++.++..+++.+.|...|++.++..|.+.
T Consensus 438 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 9999999999999999999999999999999999999999999874
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.6e-30 Score=262.49 Aligned_cols=373 Identities=10% Similarity=0.015 Sum_probs=281.7
Q ss_pred CHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcH
Q psy12000 21 QYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSL 100 (507)
Q Consensus 21 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (507)
....+...+.+++..+|.++..++.+|.+++..|++++|+..|+++....+. .+
T Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--------------------------~~ 60 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--------------------------NY 60 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CH
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--------------------------cH
Confidence 3445677888899999999999999999999999999999999876432111 12
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH---HHHHHHhhh
Q psy12000 101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR---IALNLKACN 177 (507)
Q Consensus 101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~a~~~~a~~ 177 (507)
..++.+|.++...|++++|+..|++++..+|++..++..+|.++..+|++++|++.|++++..+|++. .++..++.+
T Consensus 61 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 140 (450)
T 2y4t_A 61 IAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 33678999999999999999999999999999999999999999999999999999999999999988 655443332
Q ss_pred hhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhc
Q psy12000 178 TYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQD 254 (507)
Q Consensus 178 ~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~ 254 (507)
.. ...+..+|..+...|++++|+..+.++ .|.++..+...+.++...|+.
T Consensus 141 ~~---------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 193 (450)
T 2y4t_A 141 DE---------------------------MQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP 193 (450)
T ss_dssp HH---------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCG
T ss_pred HH---------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCH
Confidence 11 123566788888899999998888754 566777777778888888877
Q ss_pred cCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHH------------H
Q psy12000 255 TGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNF------------A 322 (507)
Q Consensus 255 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~l------------g 322 (507)
..+...++++.+.. ++...++..+|.++...|++++|+.+++++....|++..++..+ |
T Consensus 194 ~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 264 (450)
T 2y4t_A 194 RKAISDLKAASKLK---------NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 264 (450)
T ss_dssp GGGHHHHHHHHHHH---------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 77777776665532 22344566789999999999999999999988888887665544 8
Q ss_pred HHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHH
Q psy12000 323 QAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASI 402 (507)
Q Consensus 323 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 402 (507)
.++...|++++|+..|++++...+.+..... .....++.+
T Consensus 265 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~----------------------------------------~~~~~l~~~ 304 (450)
T 2y4t_A 265 EELIRDGRYTDATSKYESVMKTEPSIAEYTV----------------------------------------RSKERICHC 304 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCCSSHHHHH----------------------------------------HHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcchHHHH----------------------------------------HHHHHHHHH
Confidence 8999999999999999988755443211100 011334567
Q ss_pred HHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHH------------hh
Q psy12000 403 HFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA------------CN 470 (507)
Q Consensus 403 ~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~------------~~ 470 (507)
+...|++++|+..+++++..+|+++.++..+|.+|.++|++++|+..++++++++|+++.++..++ ..
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 384 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDY 384 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhH
Confidence 777899999999999999999999999999999999999999999999999999999999998888 44
Q ss_pred hhhcC-----ChHHHHHHHHH-HHHhCCCCc
Q psy12000 471 TYKLF-----TSRAAENQLKP-ILVSAGPRV 495 (507)
Q Consensus 471 ~~~~~-----~~~~~~~~~~~-~~~~~~~~~ 495 (507)
+..++ ..+.++..|++ .++..|.+.
T Consensus 385 y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp GGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred HHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 44444 33455666776 667777654
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=6.7e-31 Score=256.31 Aligned_cols=324 Identities=13% Similarity=0.029 Sum_probs=251.5
Q ss_pred ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000 5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG 84 (507)
Q Consensus 5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (507)
+.+..+.+|.+++..|+|++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++....+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------ 69 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD------------ 69 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------------
Confidence 34667889999999999999999999999999999999999999999999999999998876432221
Q ss_pred ChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC---chhHHHHHH------------HHHHHhcCC
Q psy12000 85 DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK---DLLALNVYG------------AMCYYKLDY 149 (507)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l------------a~~~~~~g~ 149 (507)
.+..+..+|.++...|++++|+..|++++..+| +++.++..+ |.++...|+
T Consensus 70 --------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 70 --------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD 135 (359)
T ss_dssp --------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred --------------cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 122367789999999999999999999999999 888888777 688888888
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHH
Q psy12000 150 YDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDL 229 (507)
Q Consensus 150 ~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 229 (507)
+++|++.+++++..+|+++.++ ..+|.++...|++++|+..
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~A~~~ 176 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELR---------------------------------------ELRAECFIKEGEPRKAISD 176 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHH---------------------------------------HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHH---------------------------------------HHHHHHHHHCCCHHHHHHH
Confidence 8888888888888888776544 4455555566666666655
Q ss_pred HHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhh
Q psy12000 230 IKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKS 309 (507)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~ 309 (507)
+.+....+|. ...++..+|.++...|++++|+..++++..
T Consensus 177 ~~~~~~~~~~----------------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 177 LKAASKLKSD----------------------------------------NTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHTTCSC----------------------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC----------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5443211111 111233467777777888888888877777
Q ss_pred hcCCCchHH------------HHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcC
Q psy12000 310 YYTSDDSFN------------FNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLG 377 (507)
Q Consensus 310 ~~~~~~~~~------------~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 377 (507)
..|++..++ ..+|.++...|++++|+..|++++...+.+.....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------------------ 272 (359)
T 3ieg_A 217 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTV------------------------ 272 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHH------------------------
T ss_pred hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH------------------------
Confidence 777765433 24588899999999999999998765543221110
Q ss_pred CcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcC
Q psy12000 378 DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 457 (507)
Q Consensus 378 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~ 457 (507)
.....++.++...|++++|+..|+++++.+|+++.++..+|.+|.++|++++|+..|+++++.+
T Consensus 273 ----------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 273 ----------------RSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp ----------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ----------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 0012345677778999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhHHHhhhhh
Q psy12000 458 PTSRIALNLKACNTYK 473 (507)
Q Consensus 458 P~~~~a~~~~~~~~~~ 473 (507)
|+++.+...++.+...
T Consensus 337 p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 337 ENDQQIREGLEKAQRL 352 (359)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHH
Confidence 9999988877776554
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=4.9e-30 Score=259.01 Aligned_cols=350 Identities=15% Similarity=0.014 Sum_probs=286.9
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE 86 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (507)
...+.+|.+++..|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..++++....+.
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------------- 92 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-------------- 92 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--------------
Confidence 345568999999999999999999999999999999999999999999999999999887432221
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh---HHHHHH------------HHHHHhcCCHH
Q psy12000 87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL---ALNVYG------------AMCYYKLDYYD 151 (507)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l------------a~~~~~~g~~~ 151 (507)
.+..+..+|.++...|++++|+..|++++..+|++. .++..+ |.++...|+++
T Consensus 93 ------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 93 ------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 122367899999999999999999999999999988 765554 77799999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHH
Q psy12000 152 VSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIK 231 (507)
Q Consensus 152 ~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~ 231 (507)
+|+..|++++..+|+++.++..++.++...|++++|...++++.+ ..|..+.++..+|.+|...|++++|+..+.
T Consensus 161 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK-----LKNDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHH-----HHCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999998763 235567899999999999999999999987
Q ss_pred hc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhh
Q psy12000 232 NL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIK 308 (507)
Q Consensus 232 ~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~ 308 (507)
++ .|.++..+...+.+ ... .....+|.++...|++++|+.+|+++.
T Consensus 236 ~~~~~~p~~~~~~~~~~~~--------------~~~-----------------~~~~~~~~~~~~~g~~~~A~~~~~~~l 284 (450)
T 2y4t_A 236 ECLKLDQDHKRCFAHYKQV--------------KKL-----------------NKLIESAEELIRDGRYTDATSKYESVM 284 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHH--------------HHH-----------------HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCCChHHHHHHHHHH--------------HHH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 65 45544332211100 000 112246899999999999999999999
Q ss_pred hhcCCCch----HHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHH
Q psy12000 309 SYYTSDDS----FNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLME 384 (507)
Q Consensus 309 ~~~~~~~~----~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 384 (507)
...|+++. .+..+|.++...|++++|+..|++++...|.+...+
T Consensus 285 ~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~-------------------------------- 332 (450)
T 2y4t_A 285 KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL-------------------------------- 332 (450)
T ss_dssp HHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH--------------------------------
T ss_pred hcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH--------------------------------
Confidence 99888743 567899999999999999999999876544322111
Q ss_pred HHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHH------------hhccccc-----cchhHH
Q psy12000 385 YHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGA------------MCYYKLD-----YYDVSQ 447 (507)
Q Consensus 385 ~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la------------~~y~~~g-----~~~~A~ 447 (507)
..++.++...|++++|+..|+++++.+|+++.++..++ ..|..+| ..+++.
T Consensus 333 ------------~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~ 400 (450)
T 2y4t_A 333 ------------KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII 400 (450)
T ss_dssp ------------HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred ------------HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence 23445667779999999999999999999999988888 6677777 566778
Q ss_pred HHHHH-HHhcCCCchh
Q psy12000 448 EQVAM-YLAQKPTSRI 462 (507)
Q Consensus 448 ~~~~~-~l~~~P~~~~ 462 (507)
+.|++ +++.+||+..
T Consensus 401 ~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 401 KAYRKLALQWHPDNFQ 416 (450)
T ss_dssp HHHHHHHHHSCGGGCC
T ss_pred HHHHHHHHHhCCCCCC
Confidence 89986 8999999753
No 11
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.98 E-value=6e-30 Score=260.16 Aligned_cols=395 Identities=13% Similarity=-0.011 Sum_probs=242.1
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcC---------CCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHH
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHL---------PNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSF 77 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~ 77 (507)
.++..+|.++..+|++++|++.|++++++ +|.....|.++|.+|..+|++++|+.+++++.....
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~------ 125 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE------ 125 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH------
Confidence 34556999999999999999999999875 566677899999999999999999999987632100
Q ss_pred HHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHH--hhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh---cCCHHH
Q psy12000 78 HLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFL--RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK---LDYYDV 152 (507)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~ 152 (507)
....... ...++.+..+|.++.. .++|++|+++|++++..+|++++++..+|.++.. .++.++
T Consensus 126 ----~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~ 193 (472)
T 4g1t_A 126 ----KFSSPYR--------IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQN 193 (472)
T ss_dssp ----HSCCSSC--------CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCC
T ss_pred ----hcccccc--------hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHH
Confidence 0000000 0011223445555444 5689999999999999999999999999988665 567789
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHhhhhh----hccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHH
Q psy12000 153 SQEQVAMYLAQKPTSRIALNLKACNTY----KLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFD 228 (507)
Q Consensus 153 A~~~~~~~l~~~p~~~~a~~~~a~~~~----~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 228 (507)
|++.+++++..+|+++.++..++..+. ..+++++|...++++.. ..|..+.++.++|.+|...|++++|+.
T Consensus 194 al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~-----~~~~~~~~~~~lg~~~~~~~~~~~A~~ 268 (472)
T 4g1t_A 194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE-----KAPGVTDVLRSAAKFYRRKDEPDKAIE 268 (472)
T ss_dssp THHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHH-----HCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----hCccHHHHHHHHHHHHHHcCchHHHHH
Confidence 999999999999999988776665443 34567888888887653 356677899999999999999999999
Q ss_pred HHHhc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHH
Q psy12000 229 LIKNL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLS 305 (507)
Q Consensus 229 ~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~ 305 (507)
.+.+. .|.++..+...|.++...+... .+ .. ....+......+.+++|+..++
T Consensus 269 ~~~~al~~~p~~~~~~~~lg~~y~~~~~~~-------~~------~~-----------~~~~~~~~~~~~~~~~A~~~~~ 324 (472)
T 4g1t_A 269 LLKKALEYIPNNAYLHCQIGCCYRAKVFQV-------MN------LR-----------ENGMYGKRKLLELIGHAVAHLK 324 (472)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-------HH------C-----------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHh-------hh------HH-----------HHHHHHHHHHHhhHHHHHHHHH
Confidence 98764 6777766666665554322110 00 00 0011222233445667777777
Q ss_pred HhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchh---hhhhhhcc-cCccchhhhHHHHHHHHcCCcHH
Q psy12000 306 SIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDY---VYISHLTK-CSPSRAKTRLSFHLSHKLGDEKS 381 (507)
Q Consensus 306 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~ 381 (507)
++....|....+++++|.+|..+|++++|+.+|++++...+.+.. .+.. ++. .....+++++|+..|.+...
T Consensus 325 ~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Ai~~y~kal~--- 400 (472)
T 4g1t_A 325 KADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLR-YGNFQLYQMKCEDKAIHHFIEGVK--- 400 (472)
T ss_dssp HHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHH-HHHHHHHTSSCHHHHHHHHHHHHH---
T ss_pred HHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHh---
Confidence 777777766666677777777777777777777777654433221 1111 111 11223334444433322100
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCch
Q psy12000 382 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 461 (507)
Q Consensus 382 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~ 461 (507)
+. +.. ....+....+..++++++..+|+++.++..+|.+|..+|++++|+++|+++|+..|.+|
T Consensus 401 -------i~--~~~-------~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 401 -------IN--QKS-------REKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp -------SC--CCC-------HHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred -------cC--ccc-------HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 00 000 00012234455667788888888888888889999999999999999999998888888
Q ss_pred hhhhHHH
Q psy12000 462 IALNLKA 468 (507)
Q Consensus 462 ~a~~~~~ 468 (507)
.+..-+|
T Consensus 465 ~a~~~~G 471 (472)
T 4g1t_A 465 SASSWNG 471 (472)
T ss_dssp -------
T ss_pred cHhhcCC
Confidence 8765443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=3.3e-30 Score=266.26 Aligned_cols=383 Identities=15% Similarity=0.025 Sum_probs=291.7
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000 101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180 (507)
Q Consensus 101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~ 180 (507)
+.++.+|..++..|++++|+..|++++..+|+++.+++.+|.|+..+|++++|++.+++++..+|+++.++..+|.++..
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHhhHHHHH--------------------------hhCCC---------------------------------
Q psy12000 181 LFTSRAAENQLKPILV--------------------------SILPP--------------------------------- 201 (507)
Q Consensus 181 ~~~~~~A~~~l~~~~~--------------------------~~~~~--------------------------------- 201 (507)
.|++++|...++.+.. +.+..
T Consensus 106 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp HTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred cCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 9999999988753200 00000
Q ss_pred ---CCCChhHhHHHHHHH--------HHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHH
Q psy12000 202 ---LIDVIPESRLNLVIY--------HLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQAL 267 (507)
Q Consensus 202 ---~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 267 (507)
..+........++.+ ....|++++|+..+.++ .|.++..+...+.++..+|......+.+++|+..
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 265 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVL 265 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 000000011222222 22346899999888765 5666555555555566666555445566777777
Q ss_pred HHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCC
Q psy12000 268 FQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLK 347 (507)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~ 347 (507)
|+.+... .++ ..++..+|.++...|++++|+.+++++....|+++.+++.+|.++...|++++|+..|++++...+.
T Consensus 266 ~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 342 (537)
T 3fp2_A 266 LQESINL--HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342 (537)
T ss_dssp HHHHHHH--CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence 7654322 222 4456679999999999999999999999999999889999999999999999999999999866554
Q ss_pred chhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchh
Q psy12000 348 NDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL 427 (507)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~ 427 (507)
+...+. .++.++...|+++.|...+.+.... -...+.....++.++...|++++|+..|+++++..|+..
T Consensus 343 ~~~~~~-~la~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 343 NVYPYI-QLACLLYKQGKFTESEAFFNETKLK---------FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp CSHHHH-HHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred CHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHh---------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 443332 3566777778888777665543110 111222335567788888999999999999998877765
Q ss_pred hh------HHHHHhhcccc----------ccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhC
Q psy12000 428 AL------NVYGAMCYYKL----------DYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSA 491 (507)
Q Consensus 428 ~~------~~~la~~y~~~----------g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (507)
.. ...+|.+|..+ |++++|+..++++++.+|+++.++..+|.+++.+++.+.|...|++.++..
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 43 45567889988 999999999999999999999999999999999999999999999999999
Q ss_pred CCCcc
Q psy12000 492 GPRVR 496 (507)
Q Consensus 492 ~~~~~ 496 (507)
|....
T Consensus 493 ~~~~~ 497 (537)
T 3fp2_A 493 RTMDE 497 (537)
T ss_dssp --CHH
T ss_pred CCcHH
Confidence 98743
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=3.8e-29 Score=243.84 Aligned_cols=319 Identities=12% Similarity=0.047 Sum_probs=257.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000 101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180 (507)
Q Consensus 101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~ 180 (507)
+.++.+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..+++++..+|+++.++..+|.++..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 44788999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred ccChHHHHHhhHHHHHhhCCCCCC---ChhHhHHHH------------HHHHHhhccHHHHHHHHHhcCCCChHHHHHHH
Q psy12000 181 LFTSRAAENQLKPILVSILPPLID---VIPESRLNL------------VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKA 245 (507)
Q Consensus 181 ~~~~~~A~~~l~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~ 245 (507)
.|++++|...++++. ...| ..+.++..+ |.++...|++++|+..+.+.
T Consensus 84 ~~~~~~A~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------------ 146 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVL-----KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI------------ 146 (359)
T ss_dssp HTCHHHHHHHHHHHH-----TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------
T ss_pred cCChHHHHHHHHHHH-----hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH------------
Confidence 999999998888764 2344 455566555 34455555555555444332
Q ss_pred HHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHH
Q psy12000 246 VVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAK 325 (507)
Q Consensus 246 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~ 325 (507)
.+. .|+...++..+|.++...|++++|+.+++++....|+++.+++.+|.++
T Consensus 147 -------------------~~~---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 147 -------------------LEV---------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY 198 (359)
T ss_dssp -------------------HHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred -------------------HHh---------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 110 1122234456889999999999999999999988898888888999999
Q ss_pred HhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHh
Q psy12000 326 CALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFL 405 (507)
Q Consensus 326 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 405 (507)
...|++++|+..|++++...+.....+. .+.. +. .......++.++..
T Consensus 199 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------------~~~~-------------~~-~~~~~~~~a~~~~~ 246 (359)
T 3ieg_A 199 YQLGDHELSLSEVRECLKLDQDHKRCFA------------------HYKQ-------------VK-KLNKLIESAEELIR 246 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHH------------------HHHH-------------HH-HHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCccchHHHH------------------HHHH-------------HH-HHHHHHHHHHHHHH
Confidence 9999999999999998765543322211 0000 00 01112345667788
Q ss_pred HhhHHHHHHHHHHHhhcCCchhh----hHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHH
Q psy12000 406 RCHYQEAIDIYKRILLDHKDLLA----LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAE 481 (507)
Q Consensus 406 ~~~~~~Ai~~~~~~l~~~p~~~~----~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~ 481 (507)
.|++++|+..|+++++..|+++. ++..+|.+|.++|++++|+..++++++.+|+++.++..+|.+++.+++.+.|.
T Consensus 247 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 326 (359)
T 3ieg_A 247 DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI 326 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 89999999999999999999874 35578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcc
Q psy12000 482 NQLKPILVSAGPRVR 496 (507)
Q Consensus 482 ~~~~~~~~~~~~~~~ 496 (507)
..|+..++..|.+..
T Consensus 327 ~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 327 QDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHHHTTCTTCHH
T ss_pred HHHHHHHhcCCCChH
Confidence 999999999998754
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=2e-27 Score=228.99 Aligned_cols=291 Identities=11% Similarity=0.030 Sum_probs=243.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL 181 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~ 181 (507)
..+.+|..++..|++++|+.+|++++..+|.+..++..++.++...|++++|+..+++++..+|+++.++..++.++...
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV 103 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHH
Q psy12000 182 F-TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREM 260 (507)
Q Consensus 182 ~-~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 260 (507)
| ++++|...+++++ ...|..+.++..+|.++...|++++|+..+.+.....|
T Consensus 104 ~~~~~~A~~~~~~a~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---------------------- 156 (330)
T 3hym_B 104 GHKNEHARRYLSKAT-----TLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK---------------------- 156 (330)
T ss_dssp CSCHHHHHHHHHHHH-----TTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT----------------------
T ss_pred hhhHHHHHHHHHHHH-----HhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc----------------------
Confidence 9 8999999888775 24455678899999999999999999888765311111
Q ss_pred HHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHh
Q psy12000 261 VKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLL 340 (507)
Q Consensus 261 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 340 (507)
+...++..+|.++...|++++|+.+++++....|+++.++..+|.++...|++++|+..|++
T Consensus 157 ------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 218 (330)
T 3hym_B 157 ------------------GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLD 218 (330)
T ss_dssp ------------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 11122345899999999999999999999999999988999999999999999999999999
Q ss_pred hcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHh
Q psy12000 341 VQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL 420 (507)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l 420 (507)
++...+... +... ..........++.++...|++++|+..|++++
T Consensus 219 a~~~~~~~~----------------------------~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 219 ALEKIKAIG----------------------------NEVT-------VDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp HHHHHTTTS----------------------------CSCT-------TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhcc----------------------------cccc-------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 864321100 0000 00000112345667778899999999999999
Q ss_pred hcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhh
Q psy12000 421 LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY 472 (507)
Q Consensus 421 ~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~ 472 (507)
+..|+++.++..+|.+|.++|++++|+..++++++.+|+++.++..++..+.
T Consensus 264 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 264 VLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp HHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred hhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988763
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=4.5e-26 Score=232.94 Aligned_cols=389 Identities=14% Similarity=0.047 Sum_probs=239.4
Q ss_pred cchhhHHHHHHHh----hcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----hccHHHHHHHHHhCCCCccccchHH
Q psy12000 6 SLTDAWLGYCHFH----LGQYKQALGIYETLRHLPNPPEDTEFNIASCYFY----LGMYLQANQILEKVPPSRAKTRLSF 77 (507)
Q Consensus 6 ~~~~~~lg~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~~~~~~~~~~~~~ 77 (507)
.++.+.+|.+|+. .+++++|+.+|+++++. .++++++.+|.+|.. .+++++|+.+++++.+.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------- 108 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-------- 108 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------
Confidence 4455666777766 67777777777777654 456667777777776 67777777766654211
Q ss_pred HHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh----cCC
Q psy12000 78 HLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFL----RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDY 149 (507)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~ 149 (507)
..+..++.+|.+|.. .+++++|+.+|+++... +++.+++.+|.+|.. .++
T Consensus 109 --------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 109 --------------------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp --------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred --------------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC
Confidence 112224566677666 66777777777776554 456667777777766 667
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh----ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHh----hc
Q psy12000 150 YDVSQEQVAMYLAQKPTSRIALNLKACNTYK----LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLK----QE 221 (507)
Q Consensus 150 ~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~----~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 221 (507)
+++|++.|++++.. +++.+...++.++.. .+++++|...+++..+ ...+.+..++|.+|.. .+
T Consensus 167 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-------~~~~~a~~~lg~~y~~g~g~~~ 237 (490)
T 2xm6_A 167 YVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT-------SGDELGQLHLADMYYFGIGVTQ 237 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHcCCCCCC
Confidence 77777777777654 355666666666655 5666666666666542 1234566666666665 56
Q ss_pred cHHHHHHHHHhc-CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhh-----c
Q psy12000 222 EHQEAFDLIKNL-EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLL-----R 295 (507)
Q Consensus 222 ~~~~A~~~l~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~ 295 (507)
++++|+..+++. ...++......+.++.. |. .....+++|+.+|++..+. ....+...+|.+|... +
T Consensus 238 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~-g~--~~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~~~~g~~~ 310 (490)
T 2xm6_A 238 DYTQSRVLFSQSAEQGNSIAQFRLGYILEQ-GL--AGAKEPLKALEWYRKSAEQ----GNSDGQYYLAHLYDKGAEGVAK 310 (490)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-TT--TSSCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHCBTTBCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHC-CC--CCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcC
Confidence 666666666543 23333333333333322 10 0112334444444433221 1122333455555554 5
Q ss_pred CHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhC---CHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHH
Q psy12000 296 SFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALG---QYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHL 372 (507)
Q Consensus 296 ~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 372 (507)
++++|+.+++++.+. .++.+.+++|.+|...| ++++|+.+|+++.+.+.
T Consensus 311 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~-------------------------- 362 (490)
T 2xm6_A 311 NREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGE-------------------------- 362 (490)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCC--------------------------
Confidence 555555555555433 22334455555555533 55555555555433221
Q ss_pred HHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHh----HhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccc----cccch
Q psy12000 373 SHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFL----RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYD 444 (507)
Q Consensus 373 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~----~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~----~g~~~ 444 (507)
++....++.++.. .+++++|+.+|+++.+.. ++.+.+.+|.+|.+ .++++
T Consensus 363 --------------------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 363 --------------------KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp --------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred --------------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHH
Confidence 2223445556665 579999999999998854 57788899999998 89999
Q ss_pred hHHHHHHHHHhcC---CCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000 445 VSQEQVAMYLAQK---PTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR 494 (507)
Q Consensus 445 ~A~~~~~~~l~~~---P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
+|+..|+++++.. |+++.+.+.++.++.. ..+.++...+..++++|++
T Consensus 421 ~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~ 471 (490)
T 2xm6_A 421 QAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPE 471 (490)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 4589998888887553 5666776779999998876
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.4e-26 Score=223.21 Aligned_cols=285 Identities=8% Similarity=-0.028 Sum_probs=233.6
Q ss_pred ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000 5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG 84 (507)
Q Consensus 5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (507)
..+..+.+|..++..|+|++|+..|+++++.+|.+..++..++.++...|++++|+..++++....+.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------ 88 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS------------ 88 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC------------
Confidence 34567778999999999999999999999999999999999999999999999999998876432221
Q ss_pred ChhHHHHHHHHHhhcHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000 85 DEKSLMEYHQKLEDSLEEQLCLASIHFLRC-HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ 163 (507)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 163 (507)
.+..+..+|.++...| ++++|+.+|++++..+|+++.++..+|.++...|++++|++.+++++..
T Consensus 89 --------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 154 (330)
T 3hym_B 89 --------------NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL 154 (330)
T ss_dssp --------------STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------------CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 1223677899999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHH
Q psy12000 164 KPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYIL 243 (507)
Q Consensus 164 ~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~ 243 (507)
+|++..++..++.++...|++++|...++++. ...|..+.++..+|.++...|++++|+..+.+.
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---------- 219 (330)
T 3hym_B 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQAL-----SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDA---------- 219 (330)
T ss_dssp TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH-----TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----------
T ss_pred ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHH----------
Confidence 99988888888888888899999988888764 234556778888888888888888888777543
Q ss_pred HHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHH
Q psy12000 244 KAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQ 323 (507)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~ 323 (507)
+............+....++..+|.++...|++++|+.+++++....|++..+++++|.
T Consensus 220 ---------------------~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~ 278 (330)
T 3hym_B 220 ---------------------LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGY 278 (330)
T ss_dssp ---------------------HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred ---------------------HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 11111111111112223345678999999999999999999999999999999999999
Q ss_pred HHHhhCCHHHHHHHHHhhcccCCCchhh
Q psy12000 324 AKCALGQYKEAEEMFLLVQNEGLKNDYV 351 (507)
Q Consensus 324 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 351 (507)
++...|++++|+.+|++++...|.+...
T Consensus 279 ~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (330)
T 3hym_B 279 IHSLMGNFENAVDYFHTALGLRRDDTFS 306 (330)
T ss_dssp HHHHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHccCCCchHH
Confidence 9999999999999999998777655433
No 17
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=4.9e-27 Score=238.66 Aligned_cols=410 Identities=13% Similarity=-0.024 Sum_probs=263.4
Q ss_pred hcCHHHHHHHHHHHh----cCC--CCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHH
Q psy12000 19 LGQYKQALGIYETLR----HLP--NPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEY 92 (507)
Q Consensus 19 ~g~~~~A~~~~~~~l----~~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (507)
.++++.++..+++.+ +.. +.....+..+|.++..+|++++|++.++++.+..... ......
T Consensus 24 l~~~~~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~---------~~~~~~---- 90 (472)
T 4g1t_A 24 LMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE---------HADQAE---- 90 (472)
T ss_dssp TTTTCCCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------SGGGCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc---------Cccccc----
Confidence 344445555554443 322 2334677889999999999999999998874210000 000000
Q ss_pred HHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC--------chhHHHHHHHHHHHhc--CCHHHHHHHHHHHHh
Q psy12000 93 HQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK--------DLLALNVYGAMCYYKL--DYYDVSQEQVAMYLA 162 (507)
Q Consensus 93 ~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~ 162 (507)
......+.++|.+|..+|++++|+.+|++++.+.| +.+.++.++|.++... +++++|++.|++++.
T Consensus 91 ----~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~ 166 (472)
T 4g1t_A 91 ----IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE 166 (472)
T ss_dssp ----TTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 00112266899999999999999999999998743 4567888888777664 579999999999999
Q ss_pred cCCCcHHHHHHHhhhhhhc---cChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHh----hccHHHHHHHHHh---
Q psy12000 163 QKPTSRIALNLKACNTYKL---FTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLK----QEEHQEAFDLIKN--- 232 (507)
Q Consensus 163 ~~p~~~~a~~~~a~~~~~~---~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~l~~--- 232 (507)
.+|+++.++..++.+.+.. ++.++|...++++++ ..|..+.++.++|..+.. .|++++|...+++
T Consensus 167 ~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~-----l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~ 241 (472)
T 4g1t_A 167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR-----LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE 241 (472)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH-----HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-----cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999888777776554 456777777776642 356667778778766544 5778889888875
Q ss_pred cCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcC
Q psy12000 233 LEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYT 312 (507)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~ 312 (507)
..|..+..+...|.++...|+...+...+++|++. .|+...++..+|.+|..++....+..
T Consensus 242 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~y~~~~~~~~~~~---------- 302 (472)
T 4g1t_A 242 KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY---------IPNNAYLHCQIGCCYRAKVFQVMNLR---------- 302 (472)
T ss_dssp HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------STTCHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---------CCChHHHHHHHHHHHHHHHHHhhhHH----------
Confidence 47888887878888888888776666666665542 23344455667877754332222111
Q ss_pred CCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcC---CcH-HHHHHHHH
Q psy12000 313 SDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLG---DEK-SLMEYHQK 388 (507)
Q Consensus 313 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~-~~~~~~~~ 388 (507)
....+......+.+++|+..|++++..++.....+. .+|.++...|++++|...+.+.. ..+ .....+
T Consensus 303 -----~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~-- 374 (472)
T 4g1t_A 303 -----ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS-ILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH-- 374 (472)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHH-HHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHH--
T ss_pred -----HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhh-hHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHH--
Confidence 112333344456789999999999866554433332 35778888899999988776642 111 111111
Q ss_pred hhhcHHHHHHHHHH-HHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHH
Q psy12000 389 LEDSLEEQLCLASI-HFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLK 467 (507)
Q Consensus 389 l~~~~~~~~~l~~~-~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~ 467 (507)
..++.+ .+..|++++|+..|+++++..|++.... +..+.+...++++++.+|+++.+++.+
T Consensus 375 --------~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~----------~~~~~l~~~~~~~l~~~p~~~~~~~~L 436 (472)
T 4g1t_A 375 --------LRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE----------KMKDKLQKIAKMRLSKNGADSEALHVL 436 (472)
T ss_dssp --------HHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH----------HHHHHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred --------HHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH----------HHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 223333 3456899999999999999999876532 234566778889999999999999999
Q ss_pred HhhhhhcCChHHHHHHHHHHHHhCCCCc
Q psy12000 468 ACNTYKLFTSRAAENQLKPILVSAGPRV 495 (507)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (507)
|.++...++.+.|..-|++.++..|.+.
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHHHHHHCC-----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999887653
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=9.4e-27 Score=228.31 Aligned_cols=310 Identities=13% Similarity=0.003 Sum_probs=206.7
Q ss_pred HHHhhcCHHHHHH-HHHHHhcCCCCCh----hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHH
Q psy12000 15 CHFHLGQYKQALG-IYETLRHLPNPPE----DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSL 89 (507)
Q Consensus 15 ~~~~~g~~~~A~~-~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (507)
++...|+|++|+. .|+++++..|.++ ..++.+|.++...|++++|+..++++....+..
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------------- 97 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH---------------- 97 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----------------
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------
Confidence 5666677777777 7777777666653 456677777777777777777776654322211
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 90 MEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 90 ~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
+..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|++.+++++..+|++..
T Consensus 98 ----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 167 (368)
T 1fch_A 98 ----------MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH 167 (368)
T ss_dssp ----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG
T ss_pred ----------HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 1224566777777777777777777777777777777777777777777777777777777777776654
Q ss_pred HHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy12000 170 ALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQV 249 (507)
Q Consensus 170 a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 249 (507)
.+...+.+ ... .........++.++ ..|++++|+..+.+....+|.
T Consensus 168 ~~~~~~~~-------~~~----------------~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~---------- 213 (368)
T 1fch_A 168 LVTPAEEG-------AGG----------------AGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPT---------- 213 (368)
T ss_dssp GCC--------------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTT----------
T ss_pred HHHHHHHH-------hhh----------------hcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcC----------
Confidence 32211000 000 00011222455555 777888887776543111110
Q ss_pred HhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhC
Q psy12000 250 TIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALG 329 (507)
Q Consensus 250 ~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g 329 (507)
. .....+..+|.++...|++++|+.+++++....|+++.+++++|.++...|
T Consensus 214 ---------------------------~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 214 ---------------------------S-IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp ---------------------------S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred ---------------------------c-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC
Confidence 0 012234468999999999999999999999999998888999999999999
Q ss_pred CHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhH
Q psy12000 330 QYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHY 409 (507)
Q Consensus 330 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 409 (507)
++++|+..|++++...+..... ...++.++...|++
T Consensus 266 ~~~~A~~~~~~al~~~~~~~~~--------------------------------------------~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPGYIRS--------------------------------------------RYNLGISCINLGAH 301 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHH--------------------------------------------HHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHHHHHhCCCcHHH--------------------------------------------HHHHHHHHHHCCCH
Confidence 9999999999987654432211 12345677778999
Q ss_pred HHHHHHHHHHhhcCCch-----------hhhHHHHHhhccccccchhHHHHHHHHHhc
Q psy12000 410 QEAIDIYKRILLDHKDL-----------LALNVYGAMCYYKLDYYDVSQEQVAMYLAQ 456 (507)
Q Consensus 410 ~~Ai~~~~~~l~~~p~~-----------~~~~~~la~~y~~~g~~~~A~~~~~~~l~~ 456 (507)
++|+..|++++...|++ ..++..+|.+|.++|++++|..+++++++.
T Consensus 302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 99999999999988887 788999999999999999999998877664
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=1e-26 Score=228.05 Aligned_cols=329 Identities=11% Similarity=0.044 Sum_probs=224.7
Q ss_pred hcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHH-HHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHh
Q psy12000 19 LGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQ-ILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLE 97 (507)
Q Consensus 19 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 97 (507)
.+.++.+...++.+.+..|. ++...|+|++|+. .++++....+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~---------------------- 61 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDAE----------AHPWLSDYDDLTSATYDKGYQFEEENPL---------------------- 61 (368)
T ss_dssp ------------------------------------------CHHHHCCCCCCSSCTT----------------------
T ss_pred cccHHHHHHHHHHHHcCCch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcc----------------------
Confidence 34444455555544444432 5666799999999 99987653322200
Q ss_pred hcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhh
Q psy12000 98 DSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN 177 (507)
Q Consensus 98 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~ 177 (507)
.....++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|++.|++++..+|+++.++..++.
T Consensus 62 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~- 140 (368)
T 1fch_A 62 RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAV- 140 (368)
T ss_dssp TTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHH-
Confidence 0001156789999999999999999999999999999999999999999999999999999999999988765554444
Q ss_pred hhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhc
Q psy12000 178 TYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQD 254 (507)
Q Consensus 178 ~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~ 254 (507)
+|...|++++|+..+.+. .|.++..+...+..
T Consensus 141 --------------------------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~------- 175 (368)
T 1fch_A 141 --------------------------------------SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG------- 175 (368)
T ss_dssp --------------------------------------HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------------
T ss_pred --------------------------------------HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-------
Confidence 445555555555555432 23322211110000
Q ss_pred cCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCC--CchHHHHHHHHHHhhCCHH
Q psy12000 255 TGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTS--DDSFNFNFAQAKCALGQYK 332 (507)
Q Consensus 255 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~ 332 (507)
.... .+.. ....++.++ ..|++++|+.+++++....|+ +..+++++|.++...|+++
T Consensus 176 -------~~~~-----------~~~~--~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~ 234 (368)
T 1fch_A 176 -------AGGA-----------GLGP--SKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD 234 (368)
T ss_dssp ------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHH
T ss_pred -------hhhh-----------cccH--HHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHH
Confidence 0000 0000 011356666 899999999999999999998 6778889999999999999
Q ss_pred HHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHH
Q psy12000 333 EAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEA 412 (507)
Q Consensus 333 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~A 412 (507)
+|+..|++++...+.+...+ ..++.++...|++++|
T Consensus 235 ~A~~~~~~al~~~~~~~~~~--------------------------------------------~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 235 KAVDCFTAALSVRPNDYLLW--------------------------------------------NKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHH--------------------------------------------HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCcCCHHHH--------------------------------------------HHHHHHHHHcCCHHHH
Confidence 99999999876544322111 2345567778999999
Q ss_pred HHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCc-----------hhhhhHHHhhhhhcCChHHHH
Q psy12000 413 IDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS-----------RIALNLKACNTYKLFTSRAAE 481 (507)
Q Consensus 413 i~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~-----------~~a~~~~~~~~~~~~~~~~~~ 481 (507)
+..|++++...|+++.++..+|.+|.++|++++|+..+++++++.|++ +.++..++.++..++..+.|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 999999999999999999999999999999999999999999999998 889999999999999999988
Q ss_pred HHHHHHHHh
Q psy12000 482 NQLKPILVS 490 (507)
Q Consensus 482 ~~~~~~~~~ 490 (507)
+.++.-++.
T Consensus 351 ~~~~~~l~~ 359 (368)
T 1fch_A 351 AADARDLST 359 (368)
T ss_dssp HHHTTCHHH
T ss_pred HhHHHHHHH
Confidence 866654443
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=5e-25 Score=216.09 Aligned_cols=275 Identities=11% Similarity=0.007 Sum_probs=209.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
++.+|..+...|++++|+.+|++++..+|+++.+++.+|.++...|++++|++.|++++..+|++..++
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------- 136 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKAL----------- 136 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH-----------
Confidence 778999999999999999999999999999999999999999999999999999999999999876544
Q ss_pred ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHH
Q psy12000 183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVK 262 (507)
Q Consensus 183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 262 (507)
.++|.+|...|++++|+..+.+.....|.... ....++
T Consensus 137 ----------------------------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~---------- 174 (365)
T 4eqf_A 137 ----------------------------MALAVSYTNTSHQQDACEALKNWIKQNPKYKY----LVKNKK---------- 174 (365)
T ss_dssp ----------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHC----C---------------
T ss_pred ----------------------------HHHHHHHHccccHHHHHHHHHHHHHhCccchH----HHhhhc----------
Confidence 45556666666777776666554222222100 000000
Q ss_pred HHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCC--CchHHHHHHHHHHhhCCHHHHHHHHHh
Q psy12000 263 AAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTS--DDSFNFNFAQAKCALGQYKEAEEMFLL 340 (507)
Q Consensus 263 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~ 340 (507)
........+|.++...|++++|+.+++++....|+ ++.+++++|.++..+|++++|+..|++
T Consensus 175 ----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 238 (365)
T 4eqf_A 175 ----------------GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNA 238 (365)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ----------------cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 00001224688999999999999999999999998 778889999999999999999999999
Q ss_pred hcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHh
Q psy12000 341 VQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL 420 (507)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l 420 (507)
++...|.+...+ ..++.++...|++++|+..|++++
T Consensus 239 al~~~p~~~~~~--------------------------------------------~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 239 ALTVRPEDYSLW--------------------------------------------NRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHCTTCHHHH--------------------------------------------HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHH--------------------------------------------HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 876554332111 234557777899999999999999
Q ss_pred hcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCC------------chhhhhHHHhhhhhcCChHHHHHHHHHHH
Q psy12000 421 LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT------------SRIALNLKACNTYKLFTSRAAENQLKPIL 488 (507)
Q Consensus 421 ~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (507)
+.+|+++.++..+|.+|.++|++++|+..|++++++.|+ +..++..++.++..++..+.+++ +.
T Consensus 275 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~----~~ 350 (365)
T 4eqf_A 275 EIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA----AN 350 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH----HH
T ss_pred hcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH----HH
Confidence 999999999999999999999999999999999999988 36677888888887776665555 44
Q ss_pred HhCCCC
Q psy12000 489 VSAGPR 494 (507)
Q Consensus 489 ~~~~~~ 494 (507)
+.+|+.
T Consensus 351 ~~~l~~ 356 (365)
T 4eqf_A 351 LGDLDV 356 (365)
T ss_dssp TTCCGG
T ss_pred HhhHHH
Confidence 445543
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.93 E-value=8.9e-25 Score=210.17 Aligned_cols=281 Identities=10% Similarity=0.022 Sum_probs=218.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
++.+|..+...|++++|+.+|++++..+|++..++..+|.++...|++++|++.+++++..+|++..++..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~--------- 94 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA--------- 94 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH---------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHH---------
Confidence 67899999999999999999999999999999999999999999999999999999999999987755444
Q ss_pred ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHH
Q psy12000 183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSRE 259 (507)
Q Consensus 183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~ 259 (507)
+|.++...|++++|+..+.+. .|.++..+......
T Consensus 95 ------------------------------la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~------------ 132 (327)
T 3cv0_A 95 ------------------------------LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA------------ 132 (327)
T ss_dssp ------------------------------HHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------------
T ss_pred ------------------------------HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH------------
Confidence 444555555555555555443 22222111100000
Q ss_pred HHHHHHHHHHHhCCCcccccchhhhhHH-HH-HHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHH
Q psy12000 260 MVKAAQALFQLVGSSQSECDTVPGRQCM-AS-SFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEM 337 (507)
Q Consensus 260 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l-a~-~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 337 (507)
. ++.. ....+ +. ++...|++++|+.+++++....|++..++..+|.++...|++++|+..
T Consensus 133 -----------~------~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 194 (327)
T 3cv0_A 133 -----------D------VDID-DLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAAN 194 (327)
T ss_dssp -------------------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------H------HHHH-HHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 0 0000 00123 33 478889999999999999999998888889999999999999999999
Q ss_pred HHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHH
Q psy12000 338 FLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYK 417 (507)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~ 417 (507)
|++++...+.+... ...++.++...|++++|+..|+
T Consensus 195 ~~~~~~~~~~~~~~--------------------------------------------~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 195 LRRAVELRPDDAQL--------------------------------------------WNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHCTTCHHH--------------------------------------------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCCcHHH--------------------------------------------HHHHHHHHHHcCCHHHHHHHHH
Confidence 99987554332111 1233456677799999999999
Q ss_pred HHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCC------------chhhhhHHHhhhhhcCChHHHHHHHH
Q psy12000 418 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT------------SRIALNLKACNTYKLFTSRAAENQLK 485 (507)
Q Consensus 418 ~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~------------~~~a~~~~~~~~~~~~~~~~~~~~~~ 485 (507)
++++..|+++.++..+|.+|.++|++++|+..++++++..|+ ++.++..++.++..+++.+.|.+.++
T Consensus 231 ~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 231 RALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 88999999999999999999999888
Q ss_pred HHHHhCCCCcc
Q psy12000 486 PILVSAGPRVR 496 (507)
Q Consensus 486 ~~~~~~~~~~~ 496 (507)
..++..|....
T Consensus 311 ~~l~~~~~~~~ 321 (327)
T 3cv0_A 311 QNVEPFAKEFG 321 (327)
T ss_dssp CCSHHHHHHTT
T ss_pred HHHHhcchhhh
Confidence 88877766543
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=1.3e-24 Score=213.17 Aligned_cols=263 Identities=10% Similarity=-0.068 Sum_probs=169.0
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChh
Q psy12000 8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEK 87 (507)
Q Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (507)
..+.+|.+++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++....+.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------------- 131 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN--------------- 131 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---------------
Confidence 35667777777777777777777777777777777777777777777777777777765321111
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHH----------HHHHHhcCCHHHHHHHH
Q psy12000 88 SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYG----------AMCYYKLDYYDVSQEQV 157 (507)
Q Consensus 88 ~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l----------a~~~~~~g~~~~A~~~~ 157 (507)
.+..+..+|.++...|++++|+.+|++++..+|++..++..+ |.++...|++++|++.+
T Consensus 132 -----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 132 -----------NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 112255677777777777777777777777777665555444 77777777777777777
Q ss_pred HHHHhcCCC--cHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCC
Q psy12000 158 AMYLAQKPT--SRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP 235 (507)
Q Consensus 158 ~~~l~~~p~--~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~ 235 (507)
++++..+|+ ++.++..+|.++...|++++|+..++++++ ..|..+.++.++|.+|...|++++|+..+++.
T Consensus 201 ~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-- 273 (365)
T 4eqf_A 201 LEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT-----VRPEDYSLWNRLGATLANGDRSEEAVEAYTRA-- 273 (365)
T ss_dssp HHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--
T ss_pred HHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--
Confidence 777777777 666666666666666666666666665542 12334556666666666666666666555432
Q ss_pred CChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCC--
Q psy12000 236 SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTS-- 313 (507)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~-- 313 (507)
++. .|+...++..+|.++...|++++|+.+++++....|+
T Consensus 274 -----------------------------l~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 274 -----------------------------LEI---------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315 (365)
T ss_dssp -----------------------------HHH---------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred -----------------------------Hhc---------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence 110 1112223445777788888888888888877766654
Q ss_pred ----------CchHHHHHHHHHHhhCCHHHHHHHHHhh
Q psy12000 314 ----------DDSFNFNFAQAKCALGQYKEAEEMFLLV 341 (507)
Q Consensus 314 ----------~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 341 (507)
...++..+|.++...|+.+.|.....+.
T Consensus 316 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 316 NQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp -----------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred CCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 2455667888888888888887777664
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=3.8e-22 Score=203.82 Aligned_cols=370 Identities=10% Similarity=-0.037 Sum_probs=284.7
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHh----hccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhc
Q psy12000 24 QALGIYETLRHLPNPPEDTEFNIASCYFY----LGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDS 99 (507)
Q Consensus 24 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (507)
.++..++++.+ +.++++++.+|.+|.. .+++++|+.+++++.+. ..
T Consensus 25 ~~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----------------------------~~ 74 (490)
T 2xm6_A 25 VNLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----------------------------GY 74 (490)
T ss_dssp CCHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------------------------TC
T ss_pred HHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----------------------------CC
Confidence 34666666654 6778999999999999 89999999999876321 11
Q ss_pred HHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12000 100 LEEQLCLASIHFL----RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQKPTSRIAL 171 (507)
Q Consensus 100 ~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~a~ 171 (507)
+..++.||.+|.. .+++++|+.+|+++... +++.+.+.+|.+|.. .+++++|++.|+++... +++.+.
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~ 150 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQ 150 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 3347789999999 99999999999999875 578889999999999 89999999999999765 577888
Q ss_pred HHHhhhhhh----ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHh----hccHHHHHHHHHhc-CCCChHHHH
Q psy12000 172 NLKACNTYK----LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLK----QEEHQEAFDLIKNL-EPSVPQEYI 242 (507)
Q Consensus 172 ~~~a~~~~~----~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~l~~~-~~~~~~~~~ 242 (507)
..++.++.. .+++++|...++++.+ ...+.++.+||.+|.. .+++++|+..+.+. ...++....
T Consensus 151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~-------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 223 (490)
T 2xm6_A 151 QSMGDAYFEGDGVTRDYVMAREWYSKAAE-------QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQL 223 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHH
Confidence 888888876 6789999999988754 1356889999999998 89999999988764 344555555
Q ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHh----hcCHHHHHHHHHHhhhhcCCCchHH
Q psy12000 243 LKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFL----LRSFKDVILYLSSIKSYYTSDDSFN 318 (507)
Q Consensus 243 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~Ai~~~~~~~~~~~~~~~~~ 318 (507)
..+.++.. |. .....+++|+.+|++..+.. ...+...+|.+|.. .+++++|+.+|+++.+. .++.+.
T Consensus 224 ~lg~~y~~-g~--g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~ 294 (490)
T 2xm6_A 224 HLADMYYF-GI--GVTQDYTQSRVLFSQSAEQG----NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQ 294 (490)
T ss_dssp HHHHHHHH-TS--SSCCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHH
T ss_pred HHHHHHHc-CC--CCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHH
Confidence 55555543 11 11235667777776654321 23455567888887 78888888888887654 345567
Q ss_pred HHHHHHHHhh-----CCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcH
Q psy12000 319 FNFAQAKCAL-----GQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSL 393 (507)
Q Consensus 319 ~~lg~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 393 (507)
+++|.+|... +++++|+.+|+++.+.++...
T Consensus 295 ~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a-------------------------------------------- 330 (490)
T 2xm6_A 295 YYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATA-------------------------------------------- 330 (490)
T ss_dssp HHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHH--------------------------------------------
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHH--------------------------------------------
Confidence 7788888877 788888888888765432211
Q ss_pred HHHHHHHHHHHhH---hhHHHHHHHHHHHhhcCCchhhhHHHHHhhccc----cccchhHHHHHHHHHhcCCCchhhhhH
Q psy12000 394 EEQLCLASIHFLR---CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQKPTSRIALNL 466 (507)
Q Consensus 394 ~~~~~l~~~~~~~---~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~ 466 (507)
...++.++... .++++|+.+|+++.+. +++.+.+.+|.+|.. .+++++|+..|+++++. +++.+++.
T Consensus 331 --~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~ 404 (490)
T 2xm6_A 331 --QANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQ 404 (490)
T ss_dssp --HHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred --HHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHH
Confidence 12233344432 3899999999999986 568889999999999 89999999999999985 57899999
Q ss_pred HHhhhhh----cCChHHHHHHHHHHHHhCCC
Q psy12000 467 KACNTYK----LFTSRAAENQLKPILVSAGP 493 (507)
Q Consensus 467 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 493 (507)
+|.+++. ..+...|..-|+..++..|.
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 9999998 78899999999999998853
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=3.5e-24 Score=205.96 Aligned_cols=266 Identities=13% Similarity=-0.026 Sum_probs=217.2
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE 86 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (507)
...+.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++....+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------- 87 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-------------- 87 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC--------------
Confidence 445778999999999999999999999999999999999999999999999999999876432111
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHH--------------HH-HHHhcCCHH
Q psy12000 87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYG--------------AM-CYYKLDYYD 151 (507)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l--------------a~-~~~~~g~~~ 151 (507)
.+..+..+|.++...|++++|+..|++++..+|++..++..+ +. ++...|+++
T Consensus 88 ------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 88 ------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHH
T ss_pred ------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHH
Confidence 122366789999999999999999999999999988877776 66 789999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHH
Q psy12000 152 VSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIK 231 (507)
Q Consensus 152 ~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~ 231 (507)
+|+..+++++..+|+++.++..++.++...|++++|...++++.+ ..|..+.++..+|.++...|++++|+..+.
T Consensus 156 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE-----LRPDDAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999998888888888899999999988887653 234556788888888888888888888776
Q ss_pred hcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhc
Q psy12000 232 NLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYY 311 (507)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~ 311 (507)
+..... ++...++..+|.++...|++++|+.+++++....
T Consensus 231 ~a~~~~----------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 231 RALDIN----------------------------------------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp HHHHHC----------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcC----------------------------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 531111 1112234468899999999999999999999888
Q ss_pred CC------------CchHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000 312 TS------------DDSFNFNFAQAKCALGQYKEAEEMFLLVQN 343 (507)
Q Consensus 312 ~~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~ 343 (507)
|+ ...++..+|.++..+|++++|...+++++.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 271 VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88 667888899999999999999999988764
No 25
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.92 E-value=4.5e-23 Score=193.11 Aligned_cols=263 Identities=11% Similarity=0.077 Sum_probs=193.3
Q ss_pred cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000 6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD 85 (507)
Q Consensus 6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (507)
++..+..|.+++..|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..++++...+.....
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------- 72 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA---------- 72 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC----------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH----------
Confidence 4567889999999999999999999999999999999999999999999999999999987653211110
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12000 86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP 165 (507)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 165 (507)
....+..+|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|++.+++++..+|
T Consensus 73 -------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 139 (272)
T 3u4t_A 73 -------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139 (272)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC
T ss_pred -------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC
Confidence 0122678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHH
Q psy12000 166 TSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKA 245 (507)
Q Consensus 166 ~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~ 245 (507)
+++.++..+|...+..+++++|...++++++ +.|.++..+..++
T Consensus 140 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------------------------~~p~~~~~~~~~~ 183 (272)
T 3u4t_A 140 TDPKVFYELGQAYYYNKEYVKADSSFVKVLE------------------------------------LKPNIYIGYLWRA 183 (272)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------------HSTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------hCccchHHHHHHH
Confidence 9887766666233333355555555544331 2344444444555
Q ss_pred HHHHHhhh---ccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHH
Q psy12000 246 VVQVTIGQ---DTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFA 322 (507)
Q Consensus 246 ~~~~~~g~---~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg 322 (507)
.++..+++ ...+...++++++.....+... ......++..+|.++...|++++|+.+++++.+.+|+++.+.-.++
T Consensus 184 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 184 RANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence 55555555 4445555666655543222110 0011234556899999999999999999999999999887776666
Q ss_pred HHHHhh
Q psy12000 323 QAKCAL 328 (507)
Q Consensus 323 ~~~~~~ 328 (507)
.+....
T Consensus 263 ~~~~~~ 268 (272)
T 3u4t_A 263 MKLEHH 268 (272)
T ss_dssp ------
T ss_pred hhhccc
Confidence 654443
No 26
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.91 E-value=2e-23 Score=195.49 Aligned_cols=250 Identities=18% Similarity=0.175 Sum_probs=194.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|++.+++++. .|.++.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~------------- 71 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK------------- 71 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT-------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh-------------
Confidence 678899999999999999999999999999999999999999999999999999999988 443321
Q ss_pred ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHH
Q psy12000 183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVK 262 (507)
Q Consensus 183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 262 (507)
..+.++..+|.++...|++++|+..+.+....+|
T Consensus 72 ----------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~------------------------ 105 (272)
T 3u4t_A 72 ----------------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT------------------------ 105 (272)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------------------------
T ss_pred ----------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc------------------------
Confidence 1234677888999999999999888865311111
Q ss_pred HHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000 263 AAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQ 342 (507)
Q Consensus 263 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~ 342 (507)
+...++..+|.++...|++++|+.+++++....|+++.+++++|...+..+++++|+..|++++
T Consensus 106 ----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 169 (272)
T 3u4t_A 106 ----------------TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVL 169 (272)
T ss_dssp ----------------TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122344689999999999999999999999999998889999944445569999999999988
Q ss_pred ccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhh---HHHHHHHHHHH
Q psy12000 343 NEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCH---YQEAIDIYKRI 419 (507)
Q Consensus 343 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~---~~~Ai~~~~~~ 419 (507)
...|.+...+ ..++.++...++ +++|+..|+++
T Consensus 170 ~~~p~~~~~~--------------------------------------------~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 170 ELKPNIYIGY--------------------------------------------LWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHSTTCHHHH--------------------------------------------HHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HhCccchHHH--------------------------------------------HHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 6654432111 112334444455 78888888888
Q ss_pred hhcC---Cc-----hhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhh
Q psy12000 420 LLDH---KD-----LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY 472 (507)
Q Consensus 420 l~~~---p~-----~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~ 472 (507)
++.. |+ ...++..+|.+|.++|++++|++.++++++++|+++.+...++.+.-
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 8654 44 23577889999999999999999999999999999999887766543
No 27
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.91 E-value=2e-23 Score=204.66 Aligned_cols=250 Identities=6% Similarity=-0.077 Sum_probs=199.7
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhcc-HHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGM-YLQANQILEKVPPSRAKTRLSFHLSHKLGD 85 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (507)
.+...+|.++...|++++|+..|+++++.+|++..+|+++|.++..+|+ +++|+..++++....+.+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~------------ 165 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN------------ 165 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC------------
Confidence 4556689999999999999999999999999999999999999999997 999999998875432221
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12000 86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP 165 (507)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 165 (507)
+..+..+|.++...|++++|+..|+++|..+|++..+++++|.++..+|++++|+..+++++..+|
T Consensus 166 --------------~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P 231 (382)
T 2h6f_A 166 --------------YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231 (382)
T ss_dssp --------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred --------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 233778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHhhhhhh-ccChHHHH-----HhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhc--cHHHHHHHHHhcCCCC
Q psy12000 166 TSRIALNLKACNTYK-LFTSRAAE-----NQLKPILVSILPPLIDVIPESRLNLVIYHLKQE--EHQEAFDLIKNLEPSV 237 (507)
Q Consensus 166 ~~~~a~~~~a~~~~~-~~~~~~A~-----~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~l~~~~~~~ 237 (507)
++..+++.++.++.. .|..++|. ..+++++. ..|..+.+|.+++.++...| ++++|++.+.++ ..+
T Consensus 232 ~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~-----l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~ 305 (382)
T 2h6f_A 232 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK-----LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS 305 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT
T ss_pred CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC
Confidence 999999999998888 45547763 55555442 34556677777777777766 567776666544 222
Q ss_pred hHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhc---------CHHHHHHHHHHh-
Q psy12000 238 PQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLR---------SFKDVILYLSSI- 307 (507)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---------~~~~Ai~~~~~~- 307 (507)
| +...++..+|.+|..+| .+++|+++++++
T Consensus 306 p----------------------------------------~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~ 345 (382)
T 2h6f_A 306 H----------------------------------------SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILA 345 (382)
T ss_dssp C----------------------------------------CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred C----------------------------------------CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 1 22223335666776653 258899999998
Q ss_pred hhhcCCCchHHHHHHHHHHhh
Q psy12000 308 KSYYTSDDSFNFNFAQAKCAL 328 (507)
Q Consensus 308 ~~~~~~~~~~~~~lg~~~~~~ 328 (507)
.+.+|....++..++.++..+
T Consensus 346 ~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 346 KEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HTTCGGGHHHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHH
Confidence 788888877777788776654
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=6.3e-21 Score=196.75 Aligned_cols=415 Identities=9% Similarity=-0.047 Sum_probs=257.6
Q ss_pred CccchhhHH--HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHH
Q psy12000 4 ADSLTDAWL--GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSH 81 (507)
Q Consensus 4 ~~~~~~~~l--g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~ 81 (507)
.|.+...|+ +. +...|++++|...|+++++.+|.+..+|..++......|++++|...|+++....+...++...+.
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 455666664 44 356899999999999999999999999999999999999999999999999875553333222221
Q ss_pred hcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHH----HHHHHHHh---CCchhHHHHHHHHHHHh--------
Q psy12000 82 KLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAID----IYKRILLD---HKDLLALNVYGAMCYYK-------- 146 (507)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~----~~~~~l~~---~p~~~~~~~~la~~~~~-------- 146 (507)
.+....|++++|.+ .|++++.. +|++..++...+.....
T Consensus 88 --------------------------~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~ 141 (530)
T 2ooe_A 88 --------------------------YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYA 141 (530)
T ss_dssp --------------------------HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTT
T ss_pred --------------------------HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHH
Confidence 11122233333332 44444433 23334444443333322
Q ss_pred -cCCHHHHHHHHHHHHhcCCCcHHHHHHHhh---------------hhhhccChHHHHHhhHHHHH--hhCC----CCCC
Q psy12000 147 -LDYYDVSQEQVAMYLAQKPTSRIALNLKAC---------------NTYKLFTSRAAENQLKPILV--SILP----PLID 204 (507)
Q Consensus 147 -~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~---------------~~~~~~~~~~A~~~l~~~~~--~~~~----~~~~ 204 (507)
.|++++|..+|++++. .|........... +....+++..|...++.... ..+. ..+|
T Consensus 142 ~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 142 ENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp HHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 4555555555555555 3433211110000 00122344455444433210 1111 1122
Q ss_pred Ch-------hHhHHHHHHHHHh----hcc----HHHHHHHHHh---cCCCChHHHHHHHHHHHH-------hhhccCcHH
Q psy12000 205 VI-------PESRLNLVIYHLK----QEE----HQEAFDLIKN---LEPSVPQEYILKAVVQVT-------IGQDTGSRE 259 (507)
Q Consensus 205 ~~-------~~~~~~l~~~~~~----~~~----~~~A~~~l~~---~~~~~~~~~~~~~~~~~~-------~g~~~~~~~ 259 (507)
.. ...|......-.. .++ ..+++..+++ ..|.++..+...+..+.. .|+...+..
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 21 1233333222111 112 1344444443 357888888777776654 344321111
Q ss_pred HHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc-hHHHHHHHHHHhhCCHHHHHHHH
Q psy12000 260 MVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD-SFNFNFAQAKCALGQYKEAEEMF 338 (507)
Q Consensus 260 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~ 338 (507)
..++|...|+..... ..|+....+..+|.++...|++++|...|+++...+|+++ .++..+|.++.+.|++++|.+.|
T Consensus 301 ~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 301 FSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 123566666655431 1234455667789999999999999999999999888774 47788999999999999999999
Q ss_pred HhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHH-HhHhhHHHHHHHHH
Q psy12000 339 LLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIH-FLRCHYQEAIDIYK 417 (507)
Q Consensus 339 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~-~~~~~~~~Ai~~~~ 417 (507)
++++...+.....+.. .+.+. ...|++++|+.+|+
T Consensus 380 ~~Al~~~~~~~~~~~~--------------------------------------------~a~~~~~~~~~~~~A~~~~e 415 (530)
T 2ooe_A 380 KKAREDARTRHHVYVT--------------------------------------------AALMEYYCSKDKSVAFKIFE 415 (530)
T ss_dssp HHHHTCTTCCTHHHHH--------------------------------------------HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHhccCCchHHHHH--------------------------------------------HHHHHHHHcCChhHHHHHHH
Confidence 9998654432222110 11121 23588999999999
Q ss_pred HHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchh----hhhHHHhhhhhc--CChHHHHHHHHHHHHhC
Q psy12000 418 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI----ALNLKACNTYKL--FTSRAAENQLKPILVSA 491 (507)
Q Consensus 418 ~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~----a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 491 (507)
++++..|+++.++..+|..+.++|+.++|...|+++++..|.+|. .+. .++.|+. ++.+.+...++..++..
T Consensus 416 ~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~--~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 416 LGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA--RFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHH--HHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999888765 332 3344443 45566777888888888
Q ss_pred CC
Q psy12000 492 GP 493 (507)
Q Consensus 492 ~~ 493 (507)
|.
T Consensus 494 p~ 495 (530)
T 2ooe_A 494 RE 495 (530)
T ss_dssp HH
T ss_pred ch
Confidence 84
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2e-23 Score=193.49 Aligned_cols=244 Identities=11% Similarity=0.049 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL 181 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~ 181 (507)
.+..+|.+++..|++++|+.+|++++..+ +++.+++.+|.++..+|++++|++.+++++..+|++....
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------- 75 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY---------- 75 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH----------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch----------
Confidence 37789999999999999999999999999 8899999999999999999999999999998776542100
Q ss_pred cChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHH
Q psy12000 182 FTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMV 261 (507)
Q Consensus 182 ~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (507)
+..+.++..+|.++...|++++|+..+.+.....|
T Consensus 76 ----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----------------------- 110 (258)
T 3uq3_A 76 ----------------------KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR----------------------- 110 (258)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----------------------
T ss_pred ----------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-----------------------
Confidence 01135677889999999999999887764311000
Q ss_pred HHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhh
Q psy12000 262 KAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLV 341 (507)
Q Consensus 262 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 341 (507)
-+.++...|++++|+..++++....|+...+++.+|.++...|++++|+..|+++
T Consensus 111 -------------------------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 165 (258)
T 3uq3_A 111 -------------------------TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM 165 (258)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------------------------hhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 0345667788999999999998888888888899999999999999999999998
Q ss_pred cccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhh
Q psy12000 342 QNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILL 421 (507)
Q Consensus 342 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~ 421 (507)
+...+.+...+ ..++.++...|++++|+..|+++++
T Consensus 166 ~~~~~~~~~~~--------------------------------------------~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 166 IKRAPEDARGY--------------------------------------------SNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHCTTCHHHH--------------------------------------------HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCcccHHHH--------------------------------------------HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 76554322111 2344567777999999999999999
Q ss_pred cCCchhhhHHHHHhhccccccchhHHHHHHHHHhcC------CCchhhhhHHHhh
Q psy12000 422 DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK------PTSRIALNLKACN 470 (507)
Q Consensus 422 ~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~------P~~~~a~~~~~~~ 470 (507)
.+|+++.++..+|.+|.++|++++|+..++++++.+ |++..+...+...
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999999999999999999999999999999999 8888887766654
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=2.7e-22 Score=190.08 Aligned_cols=264 Identities=9% Similarity=0.014 Sum_probs=197.8
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhCCch-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHH
Q psy12000 108 SIHFLRCHYQEAIDIYKRILLDHKDL-LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRA 186 (507)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~ 186 (507)
.-.+..|+|.+|+..++++...+|++ .++...++.+|+.+|++++|+..++. .+|....++..++..+...++.+.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34577899999999999988888877 46878889999999999999987765 255555566677777777777888
Q ss_pred HHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHH
Q psy12000 187 AENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQA 266 (507)
Q Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 266 (507)
|+..+++++. ....|..+.+++.+|.++...|++++|+..+.+ |.++.
T Consensus 84 A~~~l~~ll~---~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~--------------------------- 131 (291)
T 3mkr_A 84 IVAELDREMS---RSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLE--------------------------- 131 (291)
T ss_dssp HHHHHHHHHH---SCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHH---------------------------
T ss_pred HHHHHHHHHh---cccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHH---------------------------
Confidence 8887776542 112455667788888888888888888888765 33322
Q ss_pred HHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHH--HHHHhhCCHHHHHHHHHhhccc
Q psy12000 267 LFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFA--QAKCALGQYKEAEEMFLLVQNE 344 (507)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg--~~~~~~g~~~~A~~~~~~~~~~ 344 (507)
++..+|.++..+|++++|+..++++....|++....+..+ ..+...|++++|+..|++++..
T Consensus 132 ----------------~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 132 ----------------CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp ----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 2234678888899999999999998888877643322223 2333458899999999988765
Q ss_pred CCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCC
Q psy12000 345 GLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK 424 (507)
Q Consensus 345 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p 424 (507)
.|.+...+ ..++.++...|++++|+..|++++..+|
T Consensus 196 ~p~~~~~~--------------------------------------------~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 196 CSPTLLLL--------------------------------------------NGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp SCCCHHHH--------------------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCCcHHHH--------------------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 54332211 2234566677899999999999999999
Q ss_pred chhhhHHHHHhhccccccchh-HHHHHHHHHhcCCCchhhhhH
Q psy12000 425 DLLALNVYGAMCYYKLDYYDV-SQEQVAMYLAQKPTSRIALNL 466 (507)
Q Consensus 425 ~~~~~~~~la~~y~~~g~~~~-A~~~~~~~l~~~P~~~~a~~~ 466 (507)
+++.++.++|.++..+|++++ +..+++++++.+|+++.+..+
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 999999999999999999976 467889999999999987653
No 31
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.90 E-value=8.1e-23 Score=200.32 Aligned_cols=245 Identities=7% Similarity=0.016 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY-YDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~ 180 (507)
.+..+|.++...|++++|+..|+++|..+|++..+++++|.++..+|+ +++|+..|++++..+|++..+++.+|
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g----- 173 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR----- 173 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHH-----
Confidence 378899999999999999999999999999999999999999999997 99999999999999999886555444
Q ss_pred ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCc
Q psy12000 181 LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGS 257 (507)
Q Consensus 181 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~ 257 (507)
.++...|++++|+..+++. +|.+
T Consensus 174 ----------------------------------~~~~~~g~~~eAl~~~~kal~ldP~~-------------------- 199 (382)
T 2h6f_A 174 ----------------------------------VLVEWLRDPSQELEFIADILNQDAKN-------------------- 199 (382)
T ss_dssp ----------------------------------HHHHHHTCCTTHHHHHHHHHHHCTTC--------------------
T ss_pred ----------------------------------HHHHHccCHHHHHHHHHHHHHhCccC--------------------
Confidence 4444555555555444332 2332
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHh-hCCHHHH--
Q psy12000 258 REMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCA-LGQYKEA-- 334 (507)
Q Consensus 258 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A-- 334 (507)
..++..+|.++...|++++|+.++++++..+|++..+++++|.++.. .|.+++|
T Consensus 200 -----------------------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 200 -----------------------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp -----------------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred -----------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHH
Confidence 23445678899999999999999999999999999999999999999 5665888
Q ss_pred ---HHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHh--hH
Q psy12000 335 ---EEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRC--HY 409 (507)
Q Consensus 335 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~--~~ 409 (507)
+++|++++..+|.+...| ..++.++...| ++
T Consensus 257 ~~el~~~~~Al~l~P~~~~a~--------------------------------------------~~l~~ll~~~g~~~~ 292 (382)
T 2h6f_A 257 EREVQYTLEMIKLVPHNESAW--------------------------------------------NYLKGILQDRGLSKY 292 (382)
T ss_dssp HHHHHHHHHHHHHSTTCHHHH--------------------------------------------HHHHHHHTTTCGGGC
T ss_pred HHHHHHHHHHHHHCCCCHHHH--------------------------------------------HHHHHHHHccCccch
Confidence 588999886665443222 11222333334 68
Q ss_pred HHHHHHHHHHhhcCCchhhhHHHHHhhccccc---------cchhHHHHHHHH-HhcCCCchhhhhHHHhhhhh
Q psy12000 410 QEAIDIYKRILLDHKDLLALNVYGAMCYYKLD---------YYDVSQEQVAMY-LAQKPTSRIALNLKACNTYK 473 (507)
Q Consensus 410 ~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g---------~~~~A~~~~~~~-l~~~P~~~~a~~~~~~~~~~ 473 (507)
++|++.++++ +.+|+++.++..+|.+|.++| .+++|++.|+++ ++++|.....+..++..+..
T Consensus 293 ~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 293 PNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 9999999998 899999999999999999985 359999999999 99999999999988876654
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.90 E-value=9.5e-23 Score=184.65 Aligned_cols=197 Identities=15% Similarity=0.075 Sum_probs=164.9
Q ss_pred ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000 5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG 84 (507)
Q Consensus 5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (507)
+..+.+.+|.+++..|++++|+..|+++++.+|+++++++.+|.++..+|++++|+..++++....+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----------- 72 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY----------- 72 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----------
Confidence 445778899999999999999999999999999999999999999999999999999998875432221
Q ss_pred ChhHHHHHHHHHhhcHHHHHHHHHHHHHh-----------hcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHH
Q psy12000 85 DEKSLMEYHQKLEDSLEEQLCLASIHFLR-----------CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVS 153 (507)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 153 (507)
+..+..+|.++... |++++|+..|+++++.+|+++.+++.+|.++..+|++++|
T Consensus 73 ---------------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 73 ---------------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp ---------------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHH
Confidence 22366788888888 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000 154 QEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL 233 (507)
Q Consensus 154 ~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~ 233 (507)
+..|++++..+ +++.++..+|.++...|++++|+..++++++ ..|..+.++.++|.++...|++++|+..+++.
T Consensus 138 ~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 138 EASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALE-----QAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999 8999999999999999999999999998763 35667789999999999999999999988765
No 33
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.90 E-value=8.5e-22 Score=195.30 Aligned_cols=323 Identities=13% Similarity=0.063 Sum_probs=229.0
Q ss_pred CCCccchh--hHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccch
Q psy12000 2 GNADSLTD--AWLGYCHFHLGQYKQALGIYETLRHLPNPPE----DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRL 75 (507)
Q Consensus 2 ~~~~~~~~--~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~ 75 (507)
|+.+..+. +..|.+++..|++++|+..|+++++..|.++ .++..+|.+++..|++++|+..++++..
T Consensus 3 ~~~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------- 75 (406)
T 3sf4_A 3 GSMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT------- 75 (406)
T ss_dssp --CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------
Confidence 33444443 5689999999999999999999999999885 5788999999999999999999887632
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch------hHHHHHHHHHHHhcCC
Q psy12000 76 SFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL------LALNVYGAMCYYKLDY 149 (507)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~ 149 (507)
+....++.. .....+..+|.++...|++++|+..|++++...|.. ..++..+|.++...|+
T Consensus 76 ---~~~~~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 76 ---LARTIGDQL----------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp ---HHHHTTCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHhccccH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 111111110 011226789999999999999999999999987754 4588999999999999
Q ss_pred --------------------HHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHh
Q psy12000 150 --------------------YDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPES 209 (507)
Q Consensus 150 --------------------~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~ 209 (507)
+++|++.+++++...+.. ...+....+
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~---------------------------------~~~~~~~~~ 189 (406)
T 3sf4_A 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL---------------------------------GDRAAQGRA 189 (406)
T ss_dssp TCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT---------------------------------TCHHHHHHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---------------------------------cCcHHHHHH
Confidence 888888887776432110 001112346
Q ss_pred HHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHH
Q psy12000 210 RLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMAS 289 (507)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 289 (507)
+.++|.+|...|++++|+..+.+.. +....... ......++..+|.
T Consensus 190 ~~~la~~~~~~g~~~~A~~~~~~al-------------------------------~~~~~~~~---~~~~~~~~~~la~ 235 (406)
T 3sf4_A 190 FGNLGNTHYLLGNFRDAVIAHEQRL-------------------------------LIAKEFGD---KAAERRAYSNLGN 235 (406)
T ss_dssp HHHHHHHHHHHTBHHHHHHHHHHHH-------------------------------HHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH-------------------------------HHHHhcCC---cHHHHHHHHHHHH
Confidence 7889999999999999988886531 11111000 0001123456899
Q ss_pred HHHhhcCHHHHHHHHHHhhhhcCCC------chHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccc
Q psy12000 290 SFFLLRSFKDVILYLSSIKSYYTSD------DSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSR 363 (507)
Q Consensus 290 ~~~~~~~~~~Ai~~~~~~~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 363 (507)
++...|++++|+.+++++....+.. ..++.++|.++...|++++|+.+|++++....
T Consensus 236 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----------------- 298 (406)
T 3sf4_A 236 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ----------------- 298 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH-----------------
Confidence 9999999999999999887665433 45677899999999999999999998753211
Q ss_pred hhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcC------CchhhhHHHHHhhc
Q psy12000 364 AKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH------KDLLALNVYGAMCY 437 (507)
Q Consensus 364 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~------p~~~~~~~~la~~y 437 (507)
+.++...... ....++.++...|++++|+.+|+++++.. |....+...+|.+|
T Consensus 299 -----------~~~~~~~~~~----------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 357 (406)
T 3sf4_A 299 -----------ELNDRIGEGR----------ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQ 357 (406)
T ss_dssp -----------HTTCHHHHHH----------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----------hcCCcHHHHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 1111111001 11345667888899999999999998753 34456788899999
Q ss_pred cccccchhHHHH
Q psy12000 438 YKLDYYDVSQEQ 449 (507)
Q Consensus 438 ~~~g~~~~A~~~ 449 (507)
..+|+...+...
T Consensus 358 ~~~g~~~~~~~~ 369 (406)
T 3sf4_A 358 MVLGLSYSTNNS 369 (406)
T ss_dssp HHHHTTSCC---
T ss_pred HHhhHhHHHHHH
Confidence 999988655443
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.89 E-value=1.3e-21 Score=185.23 Aligned_cols=258 Identities=12% Similarity=0.064 Sum_probs=191.5
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHH
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNPPE-DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLM 90 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (507)
-....|..|+|..|+..++++...+|.+. +....++++|+.+|++++|+..++.. .++.
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--~~~~------------------ 64 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPE------------------ 64 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--SCHH------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc--CChh------------------
Confidence 34667889999999999999888888773 67789999999999999999877542 1111
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 91 EYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD--HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 91 ~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
...+..++..+...|++++|++.+++++.. +|+++.+++.+|.++...|++++|++.+++ |++.
T Consensus 65 ---------~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~ 130 (291)
T 3mkr_A 65 ---------LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSL 130 (291)
T ss_dssp ---------HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSH
T ss_pred ---------HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCH
Confidence 011446778888889999999999999876 599999999999999999999999999887 7777
Q ss_pred HHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHH--HHHHhhccHHHHHHHHHhcCCCChHHHHHHHH
Q psy12000 169 IALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLV--IYHLKQEEHQEAFDLIKNLEPSVPQEYILKAV 246 (507)
Q Consensus 169 ~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~ 246 (507)
.++..++.++.++|+.++|...++++.+. .|......+..+ .++...|++++|+..++++
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-----~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~------------- 192 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQ-----DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEM------------- 192 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHH-------------
Confidence 77777777777777777777776665421 111111111111 2222335555555555432
Q ss_pred HHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHH
Q psy12000 247 VQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKC 326 (507)
Q Consensus 247 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~ 326 (507)
... .|+....+..+|.++...|++++|+..+++++..+|+++.+++++|.++.
T Consensus 193 -------------------------l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~ 245 (291)
T 3mkr_A 193 -------------------------ADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245 (291)
T ss_dssp -------------------------HHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -------------------------HHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 111 12233345568999999999999999999999999999999999999999
Q ss_pred hhCCHHH-HHHHHHhhcccCCCc
Q psy12000 327 ALGQYKE-AEEMFLLVQNEGLKN 348 (507)
Q Consensus 327 ~~g~~~~-A~~~~~~~~~~~~~~ 348 (507)
..|++++ +..++++++..+|.+
T Consensus 246 ~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 246 HLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTC
T ss_pred HcCCCHHHHHHHHHHHHHhCCCC
Confidence 9999976 568888887666544
No 35
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=8.7e-20 Score=188.18 Aligned_cols=387 Identities=11% Similarity=-0.051 Sum_probs=267.6
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHH
Q psy12000 29 YETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLAS 108 (507)
Q Consensus 29 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~ 108 (507)
|+++++.+|.+.++|..++.. ...|++++|...++++....|.. +..+..+|.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~--------------------------~~~w~~~~~ 54 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSS--------------------------GRFWKLYIE 54 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTC--------------------------HHHHHHHHH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCC--------------------------HHHHHHHHH
Confidence 678888999999999999984 78999999999999986644432 122566788
Q ss_pred HHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHH-HHHhcCCHHHHHH----HHHHHHh---cCCCcHHHHHHHhhhhhh
Q psy12000 109 IHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAM-CYYKLDYYDVSQE----QVAMYLA---QKPTSRIALNLKACNTYK 180 (507)
Q Consensus 109 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~-~~~~~g~~~~A~~----~~~~~l~---~~p~~~~a~~~~a~~~~~ 180 (507)
.+...|++++|+.+|++++...| +.+++...+. +....|++++|.+ .|++++. .+|++...+...+.....
T Consensus 55 ~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~ 133 (530)
T 2ooe_A 55 AEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKG 133 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhc
Confidence 88899999999999999999999 5677777774 4456788888776 7777765 356666555444443322
Q ss_pred ---------ccChHHHHHhhHHHHHhhCCCCCCCh-hHhHHHHHHH-------------HHhhccHHHHHHHHHh-----
Q psy12000 181 ---------LFTSRAAENQLKPILVSILPPLIDVI-PESRLNLVIY-------------HLKQEEHQEAFDLIKN----- 232 (507)
Q Consensus 181 ---------~~~~~~A~~~l~~~~~~~~~~~~~~~-~~~~~~l~~~-------------~~~~~~~~~A~~~l~~----- 232 (507)
.|+.+.|...|++++. .+... ...+...+.. ....++|++|...+..
T Consensus 134 ~~~~~~~~~~~~~~~a~~~y~~al~-----~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~ 208 (530)
T 2ooe_A 134 VEAVGSYAENQRITAVRRVYQRGCV-----NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVM 208 (530)
T ss_dssp SCCCSSTTHHHHHHHHHHHHHHHTT-----SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHhHHHHHHHHHHHHHh-----chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5778888888887642 21111 1222222211 1246778888765543
Q ss_pred --c-------CCCCh----H-HHHHHHHHHHHhhhc---cCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHh--
Q psy12000 233 --L-------EPSVP----Q-EYILKAVVQVTIGQD---TGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFL-- 293 (507)
Q Consensus 233 --~-------~~~~~----~-~~~~~~~~~~~~g~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~-- 293 (507)
+ .|... . .......+....+.. .......+.++..|+..... .|.....+..+|..+..
T Consensus 209 ~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~ 286 (530)
T 2ooe_A 209 KGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSS 286 (530)
T ss_dssp HHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHH
T ss_pred HHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhc
Confidence 1 11110 0 111122222222211 01111122333444332211 22333456667877775
Q ss_pred -----hcCHH-------HHHHHHHHhhh-hcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCch-hhhhhhhccc
Q psy12000 294 -----LRSFK-------DVILYLSSIKS-YYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKND-YVYISHLTKC 359 (507)
Q Consensus 294 -----~~~~~-------~Ai~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 359 (507)
.|+++ +|+..++++.. ..|++..+++.+|.++...|++++|...|++++..++.+. ..|
T Consensus 287 ~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------- 359 (530)
T 2ooe_A 287 KLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVY------- 359 (530)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHH-------
T ss_pred hhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHH-------
Confidence 79987 99999999997 7898888899999999999999999999999987654331 122
Q ss_pred CccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhh-cc
Q psy12000 360 SPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMC-YY 438 (507)
Q Consensus 360 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~-y~ 438 (507)
..++.+....|++++|+.+|+++++..|.....+...|.+ +.
T Consensus 360 -------------------------------------~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 360 -------------------------------------IQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 402 (530)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 1122334445889999999999999999877766655554 44
Q ss_pred ccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000 439 KLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR 494 (507)
Q Consensus 439 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
..|++++|...|+.+++.+|+++.++...+.....+++...|++.|+..+...|.+
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 69999999999999999999999999999999998889999999999999986643
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.88 E-value=3.5e-21 Score=194.20 Aligned_cols=382 Identities=14% Similarity=-0.002 Sum_probs=235.5
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccH---HHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000 10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMY---LQANQILEKVPPSRAKTRLSFHLSHKLGDE 86 (507)
Q Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~---~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (507)
..+|..++..|++++|++.|+++.+. .++++++.+|.++...|++ ++|+.+|+++.+..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~---------------- 68 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTS---------------- 68 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC------------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCC----------------
Confidence 56899999999999999999999764 5678999999999999999 89999998886431
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHhh-----cHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000 87 KSLMEYHQKLEDSLEEQLCLASIHFLRC-----HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL 161 (507)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 161 (507)
+..++.+|.+++..| ++++|+.+|++++.. +++.+++.+|.+|...+..+++.+.++.+.
T Consensus 69 -------------~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~ 133 (452)
T 3e4b_A 69 -------------PRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQIS 133 (452)
T ss_dssp ---------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHH
T ss_pred -------------HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 112567777665554 899999999999874 445688999999998887666655554444
Q ss_pred hc-CCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhc---cHHHHHHHHHhc---C
Q psy12000 162 AQ-KPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQE---EHQEAFDLIKNL---E 234 (507)
Q Consensus 162 ~~-~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~l~~~---~ 234 (507)
.. .+.++.+...++.++...+.++.+......+.+... ...+.++++||.+|...| ++++|+..+++. .
T Consensus 134 ~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 134 QWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp HHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 32 234556777778887777766666555443332211 223458888898888888 888888888764 2
Q ss_pred CCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHH-H--HhhcCHHHHHHHHHHhhhhc
Q psy12000 235 PSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASS-F--FLLRSFKDVILYLSSIKSYY 311 (507)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~-~--~~~~~~~~Ai~~~~~~~~~~ 311 (507)
+.....+...|.++.. |. .....+++|+.+|++.. ++...+...||.+ + ...+++++|+.+|+++...
T Consensus 210 ~~~a~~~~~Lg~~y~~-g~--~~~~d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~- 280 (452)
T 3e4b_A 210 TVTAQRVDSVARVLGD-AT--LGTPDEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA- 280 (452)
T ss_dssp CSCHHHHHHHHHHHTC-GG--GSSCCHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHhC-CC--CCCCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-
Confidence 2222222344444421 11 12245667777776654 2234455667776 3 4577888888877776643
Q ss_pred CCCchHHHHHHHHHHhhC-----CHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHH
Q psy12000 312 TSDDSFNFNFAQAKCALG-----QYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYH 386 (507)
Q Consensus 312 ~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 386 (507)
.++.+.+++|.+|. .| ++++|+.+|+++. ++....
T Consensus 281 -g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A------------------------------------- 320 (452)
T 3e4b_A 281 -DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAA------------------------------------- 320 (452)
T ss_dssp -TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHH-------------------------------------
T ss_pred -CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHH-------------------------------------
Confidence 35566777887777 55 7888888887776 332111
Q ss_pred HHhhhcHHHHHHHHHHHHh----HhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccc----cccchhHHHHHHHHHhcCC
Q psy12000 387 QKLEDSLEEQLCLASIHFL----RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQKP 458 (507)
Q Consensus 387 ~~l~~~~~~~~~l~~~~~~----~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~----~g~~~~A~~~~~~~l~~~P 458 (507)
...+|.++.. ..++++|+.+|+++.+ ++++...+.+|.+|.. ..++++|...|+.+.+..+
T Consensus 321 ---------~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 321 ---------DYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp ---------HHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred ---------HHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 1223333332 2388999999999876 4567788889998874 4588999999999988654
Q ss_pred CchhhhhHHHhhhhhcCC--hHHHHHHHHHHHHh
Q psy12000 459 TSRIALNLKACNTYKLFT--SRAAENQLKPILVS 490 (507)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 490 (507)
+.+...++.+.-.+.. ...+++.++.....
T Consensus 390 --~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 390 --PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp --HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 4444556666554443 33444455544444
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.88 E-value=4.9e-22 Score=179.96 Aligned_cols=195 Identities=18% Similarity=0.109 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000 101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180 (507)
Q Consensus 101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~ 180 (507)
..++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+++.++..+|.++..
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999988888888887
Q ss_pred c-----------cChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy12000 181 L-----------FTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQV 249 (507)
Q Consensus 181 ~-----------~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 249 (507)
. |++++|+..++++++ ..|..+.++.++|.++..+|++++|+..+++
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~al~-----~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~----------------- 143 (217)
T 2pl2_A 86 LYRQAEDRERGKGYLEQALSVLKDAER-----VNPRYAPLHLQRGLVYALLGERDKAEASLKQ----------------- 143 (217)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------
T ss_pred hhhhhhhhcccccCHHHHHHHHHHHHH-----hCcccHHHHHHHHHHHHHcCChHHHHHHHHH-----------------
Confidence 7 777777777766542 2445556677777777777777777666643
Q ss_pred HhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhC
Q psy12000 250 TIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALG 329 (507)
Q Consensus 250 ~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g 329 (507)
|++. . +...++..+|.++...|++++|+..++++...+|+++.+++++|.++..+|
T Consensus 144 --------------al~~---------~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 144 --------------ALAL---------E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG 199 (217)
T ss_dssp --------------HHHH---------C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--
T ss_pred --------------HHhc---------c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 2221 0 112334568999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhh
Q psy12000 330 QYKEAEEMFLLV 341 (507)
Q Consensus 330 ~~~~A~~~~~~~ 341 (507)
++++|+..|+++
T Consensus 200 ~~~~A~~~~~~~ 211 (217)
T 2pl2_A 200 KAEEAARAAALE 211 (217)
T ss_dssp ------------
T ss_pred CHHHHHHHHHHH
Confidence 999999999876
No 38
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.88 E-value=3.6e-21 Score=190.76 Aligned_cols=302 Identities=15% Similarity=0.012 Sum_probs=216.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCcHHHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL----ALNVYGAMCYYKLDYYDVSQEQVAMYLAQ------KPTSRIALN 172 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~a~~ 172 (507)
++.+|..+...|++++|+.+|++++...|+++ .++..+|.++...|++++|+..+++++.. .|....++.
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 56789999999999999999999999999874 67889999999999999999999998765 233344666
Q ss_pred HHhhhhhhccChHHHHHhhHHHHHhhCCC--CCCChhHhHHHHHHHHHhhcc--------------------HHHHHHHH
Q psy12000 173 LKACNTYKLFTSRAAENQLKPILVSILPP--LIDVIPESRLNLVIYHLKQEE--------------------HQEAFDLI 230 (507)
Q Consensus 173 ~~a~~~~~~~~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~l 230 (507)
.+|.++...|++++|...++++.+ .... ..+....++.++|.+|...|+ +++|+..+
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLD-ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-HHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 677777778888888777776542 1000 011123456677777777777 44444333
Q ss_pred HhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhh
Q psy12000 231 KNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSY 310 (507)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~ 310 (507)
++++.++..... .+....++..+|.++...|++++|+.+++++...
T Consensus 171 -------------------------------~~al~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 171 -------------------------------EENLSLVTALGD---RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp -------------------------------HHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHhccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 333333332211 1112234557899999999999999999998876
Q ss_pred cCCCch------HHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHH
Q psy12000 311 YTSDDS------FNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLME 384 (507)
Q Consensus 311 ~~~~~~------~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 384 (507)
.+.... ++.++|.++...|++++|+.+|++++...+ ..++......
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----------------------------~~~~~~~~~~ 268 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR----------------------------QLKDRAVEAQ 268 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------------------HTTCHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH----------------------------hCcCchHHHH
Confidence 554332 778899999999999999999998863221 0011000000
Q ss_pred HHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCch------hhhHHHHHhhccccccchhHHHHHHHHHhcC-
Q psy12000 385 YHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL------LALNVYGAMCYYKLDYYDVSQEQVAMYLAQK- 457 (507)
Q Consensus 385 ~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~------~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~- 457 (507)
....++.++...|++++|+..|++++...|.. ..++..+|.+|.++|++++|+..+++++++.
T Consensus 269 ----------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 269 ----------SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp ----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 11335667788899999999999998764433 5577889999999999999999999999874
Q ss_pred -----CCchhhhhHHHhhhhhcCCh
Q psy12000 458 -----PTSRIALNLKACNTYKLFTS 477 (507)
Q Consensus 458 -----P~~~~a~~~~~~~~~~~~~~ 477 (507)
|....++..++.++..++..
T Consensus 339 ~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 339 EVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCCcchhHHHHHHHHHHHHhhHh
Confidence 34456777788888776643
No 39
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.88 E-value=7.1e-21 Score=189.41 Aligned_cols=287 Identities=12% Similarity=0.024 Sum_probs=210.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCcHHHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL----ALNVYGAMCYYKLDYYDVSQEQVAMYLAQ------KPTSRIALN 172 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~a~~ 172 (507)
++.+|..+...|++++|+.+|++++...|+++ .++..+|.++...|++++|+..+++++.. +|....++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 66899999999999999999999999999876 57899999999999999999999999876 455556777
Q ss_pred HHhhhhhhccChHHHHHhhHHHHHhhC-CCCCCChhHhHHHHHHHHHhhcc-----------------HHHHHHHHHhcC
Q psy12000 173 LKACNTYKLFTSRAAENQLKPILVSIL-PPLIDVIPESRLNLVIYHLKQEE-----------------HQEAFDLIKNLE 234 (507)
Q Consensus 173 ~~a~~~~~~~~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~l~~~~ 234 (507)
.+|.++...|++++|...+.+++...- ....+....++.++|.+|...|+ +++|+..+.
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~--- 207 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ--- 207 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH---
Confidence 788888888888888887777643100 01112234567777777777777 444444443
Q ss_pred CCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCC
Q psy12000 235 PSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSD 314 (507)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~ 314 (507)
+++++...... .+....++..+|.++...|++++|+.+++++....+..
T Consensus 208 ----------------------------~al~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 208 ----------------------------ENLKLMRDLGD---RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp ----------------------------HHHHHHHHHTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHcCC---HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 22222222211 11122345578999999999999999999988766543
Q ss_pred ch------HHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHH
Q psy12000 315 DS------FNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQK 388 (507)
Q Consensus 315 ~~------~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 388 (507)
.. ++.++|.+|..+|++++|+.+|++++...+ +.++.....
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----------------------------~~~~~~~~~----- 303 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV----------------------------ELGEREVEA----- 303 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH----------------------------HTTCHHHHH-----
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH----------------------------HcCCHHHHH-----
Confidence 32 678899999999999999999998864221 011100000
Q ss_pred hhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCch------hhhHHHHHhhccccccchhHHHHHHHHHhcCCCch
Q psy12000 389 LEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL------LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 461 (507)
Q Consensus 389 l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~------~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~ 461 (507)
.....++.++...|++++|+.+|++++...|+. ..++..+|.+|.++|++++|+..+++++++.+...
T Consensus 304 -----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 304 -----QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 111345667888899999999999999764433 45788899999999999999999999999886643
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=8.4e-21 Score=175.71 Aligned_cols=235 Identities=15% Similarity=0.091 Sum_probs=179.2
Q ss_pred CccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhc
Q psy12000 4 ADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKL 83 (507)
Q Consensus 4 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~ 83 (507)
........+|.+++..|++++|+..|+++++.+ .++.+++.+|.++...|++++|+..++++....+...
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--------- 72 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR--------- 72 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc---------
Confidence 345677889999999999999999999999999 8889999999999999999999999988643211110
Q ss_pred CChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000 84 GDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ 163 (507)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 163 (507)
.... ..+..+..+|.++...|++++|+..|++++...|+ +.++..+|++++|+..+++++..
T Consensus 73 ~~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~ 134 (258)
T 3uq3_A 73 ADYK----------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYV 134 (258)
T ss_dssp CCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchH----------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHc
Confidence 0000 00223678999999999999999999999999987 45788889999999999999888
Q ss_pred CCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHH
Q psy12000 164 KPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYIL 243 (507)
Q Consensus 164 ~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~ 243 (507)
+|.++.+ +..+|.++...|++++|+..+.+....+|.
T Consensus 135 ~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---- 171 (258)
T 3uq3_A 135 NPEKAEE---------------------------------------ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---- 171 (258)
T ss_dssp CHHHHHH---------------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred CcchHHH---------------------------------------HHHHHHHHHHhcCHHHHHHHHHHHHhcCcc----
Confidence 7765544 445566666666666666666554211111
Q ss_pred HHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHH
Q psy12000 244 KAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQ 323 (507)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~ 323 (507)
...++..+|.++...|++++|+.+++++....|+++.+++.+|.
T Consensus 172 ------------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~ 215 (258)
T 3uq3_A 172 ------------------------------------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 215 (258)
T ss_dssp ------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ------------------------------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 01112346788888888888888888888888888878888888
Q ss_pred HHHhhCCHHHHHHHHHhhcccC
Q psy12000 324 AKCALGQYKEAEEMFLLVQNEG 345 (507)
Q Consensus 324 ~~~~~g~~~~A~~~~~~~~~~~ 345 (507)
++..+|++++|+..|++++...
T Consensus 216 ~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 216 AQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 8888888888888888876544
No 41
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.86 E-value=4.1e-20 Score=177.66 Aligned_cols=285 Identities=15% Similarity=0.036 Sum_probs=200.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCch----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCcHHHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDL----LALNVYGAMCYYKLDYYDVSQEQVAMYLAQ------KPTSRIALN 172 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~a~~ 172 (507)
++..|..+...|++++|+.+|++++...|++ ..++..+|.++...|++++|++.+++++.. .|....++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 6678999999999999999999999999987 467889999999999999999999998765 333344566
Q ss_pred HHhhhhhhccChHHHHHhhHHHHHhhCCCC--CCChhHhHHHHHHHHHhhcc--------------------HHHHHHHH
Q psy12000 173 LKACNTYKLFTSRAAENQLKPILVSILPPL--IDVIPESRLNLVIYHLKQEE--------------------HQEAFDLI 230 (507)
Q Consensus 173 ~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~l 230 (507)
.+|.++...|++++|...+.++.+ ..... .+....++..+|.+|...|+ +++|+..+
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLD-ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH-HHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 677777777777777777776542 11111 11123356667777777777 44444444
Q ss_pred HhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhh
Q psy12000 231 KNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSY 310 (507)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~ 310 (507)
. +++........ .+....++..+|.++...|++++|+.+++++...
T Consensus 167 ~-------------------------------~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 167 E-------------------------------ENLSLVTALGD---RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp H-------------------------------HHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H-------------------------------HHHHHHHhcCC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3 22222222211 1111233456899999999999999999988766
Q ss_pred cCCCc------hHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHH
Q psy12000 311 YTSDD------SFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLME 384 (507)
Q Consensus 311 ~~~~~------~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 384 (507)
.+... .++.++|.++...|++++|+.+|++++...+ ..++......
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----------------------------~~~~~~~~~~ 264 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR----------------------------QLKDRAVEAQ 264 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----------------------------HTTCHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------------------------hhcchhHHHH
Confidence 44322 3678899999999999999999998763211 0011000000
Q ss_pred HHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCch------hhhHHHHHhhccccccchhHHHHHHHHHhcCC
Q psy12000 385 YHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL------LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP 458 (507)
Q Consensus 385 ~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~------~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P 458 (507)
....++.++...|++++|+.++++++...|.. ..++..+|.+|.++|++++|...+++++++.|
T Consensus 265 ----------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 265 ----------SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp ----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred ----------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 11335567788899999999999998765443 44777899999999999999999999999877
Q ss_pred Cc
Q psy12000 459 TS 460 (507)
Q Consensus 459 ~~ 460 (507)
+.
T Consensus 335 ~~ 336 (338)
T 3ro2_A 335 EV 336 (338)
T ss_dssp --
T ss_pred hh
Confidence 53
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.86 E-value=6.4e-21 Score=178.54 Aligned_cols=257 Identities=11% Similarity=0.032 Sum_probs=197.2
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhcCC----CCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000 10 AWLGYCHFHLGQYKQALGIYETLRHLP----NPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD 85 (507)
Q Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (507)
+.++......|++++|+..|+++++.. |.++.+++.+|.++...|++++|+..++++....+.
T Consensus 9 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------------- 75 (275)
T 1xnf_A 9 EVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------------- 75 (275)
T ss_dssp GGSCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------------
T ss_pred cceeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-------------
Confidence 345556677899999999999999974 456688999999999999999999999887532221
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12000 86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP 165 (507)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 165 (507)
.+..+..+|.++...|++++|+.+|++++..+|+++.+++.+|.++..+|++++|+..+++++..+|
T Consensus 76 -------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 142 (275)
T 1xnf_A 76 -------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142 (275)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred -------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 1223678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHH
Q psy12000 166 TSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKA 245 (507)
Q Consensus 166 ~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~ 245 (507)
++.......+.. ...|++++|...+.+.... . +... ....++.+++..+++++|+..+.+.....|...
T Consensus 143 ~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~-~----~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 211 (275)
T 1xnf_A 143 NDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEK-S----DKEQ-WGWNIVEFYLGNISEQTLMERLKADATDNTSLA---- 211 (275)
T ss_dssp TCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHH-S----CCCS-THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH----
T ss_pred CChHHHHHHHHH-HHhcCHHHHHHHHHHHHhc-C----Ccch-HHHHHHHHHHHhcCHHHHHHHHHHHhccccccc----
Confidence 998765544433 5668888888888766531 1 1111 224567777777888888877776554433210
Q ss_pred HHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHH
Q psy12000 246 VVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAK 325 (507)
Q Consensus 246 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~ 325 (507)
++....+..+|.++...|++++|+.+++++...+|++.. ..+.++
T Consensus 212 --------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~ 256 (275)
T 1xnf_A 212 --------------------------------EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV---EHRYAL 256 (275)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH---HHHHHH
T ss_pred --------------------------------ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH---HHHHHH
Confidence 000123446899999999999999999999999887643 358889
Q ss_pred HhhCCHHHHHHHH
Q psy12000 326 CALGQYKEAEEMF 338 (507)
Q Consensus 326 ~~~g~~~~A~~~~ 338 (507)
...|++++|++.|
T Consensus 257 ~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 257 LELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHhhHHHH
Confidence 9999999999988
No 43
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.86 E-value=1.1e-20 Score=188.15 Aligned_cols=281 Identities=16% Similarity=0.060 Sum_probs=200.9
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000 9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPE----DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG 84 (507)
Q Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (507)
.+.+|.+++..|++++|+..|+++++..|.++ .++..+|.++...|++++|+..++++.. ++...+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----------~~~~~~ 120 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT----------LAKSMN 120 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----------HHHHTT
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------HHHHcc
Confidence 45589999999999999999999999999987 5789999999999999999999987632 111111
Q ss_pred ChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh------CCchhHHHHHHHHHHHhcCC---------
Q psy12000 85 DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD------HKDLLALNVYGAMCYYKLDY--------- 149 (507)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~--------- 149 (507)
+.. .....+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|+
T Consensus 121 ~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 190 (411)
T 4a1s_A 121 DRL----------GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGK 190 (411)
T ss_dssp CHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred Cch----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchh
Confidence 100 01123678999999999999999999999998 56677899999999999999
Q ss_pred --------HHHHHHHHHHHHhcC------CCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCC--CCCChhHhHHHH
Q psy12000 150 --------YDVSQEQVAMYLAQK------PTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPP--LIDVIPESRLNL 213 (507)
Q Consensus 150 --------~~~A~~~~~~~l~~~------p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~l 213 (507)
+++|++.+++++... |....++..+|.+++..|++++|...+++..+ .... .......++.++
T Consensus 191 ~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l 269 (411)
T 4a1s_A 191 FGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR-IAREFGDRAAERRANSNL 269 (411)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHhcCCcHHHHHHHHHH
Confidence 999999999887542 22223555666677777777777776666542 1000 001112356666
Q ss_pred HHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHh
Q psy12000 214 VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFL 293 (507)
Q Consensus 214 ~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 293 (507)
|.+|..+|++++|+..+.+. +........ ......++..+|.++..
T Consensus 270 a~~~~~~g~~~~A~~~~~~a-------------------------------l~~~~~~~~---~~~~~~~~~~la~~~~~ 315 (411)
T 4a1s_A 270 GNSHIFLGQFEDAAEHYKRT-------------------------------LALAVELGE---REVEAQSCYSLGNTYTL 315 (411)
T ss_dssp HHHHHTTTCHHHHHHHHHHH-------------------------------HHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHH-------------------------------HHHHHHcCC---HHHHHHHHHHHHHHHHH
Confidence 77777777777776666432 222211110 00112234468999999
Q ss_pred hcCHHHHHHHHHHhhhhcCCC------chHHHHHHHHHHhhCCHHHHHHHHHhhccc
Q psy12000 294 LRSFKDVILYLSSIKSYYTSD------DSFNFNFAQAKCALGQYKEAEEMFLLVQNE 344 (507)
Q Consensus 294 ~~~~~~Ai~~~~~~~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~ 344 (507)
.|++++|+.+++++....+.. ..++..+|.+|..+|++++|+.+|++++..
T Consensus 316 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 316 LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999999999887654322 346778999999999999999999998654
No 44
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.86 E-value=2.1e-20 Score=179.64 Aligned_cols=284 Identities=15% Similarity=0.072 Sum_probs=200.7
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHh
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPE----DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHK 82 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~ 82 (507)
...+..|.+++..|++++|+..|+++++..|.++ .++..+|.++...|++++|+..++++... ...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~~~ 75 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL----------ART 75 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------hhc
Confidence 3456689999999999999999999999999984 67889999999999999999998876321 111
Q ss_pred cCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch------hHHHHHHHHHHHhcCC-------
Q psy12000 83 LGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL------LALNVYGAMCYYKLDY------- 149 (507)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~------- 149 (507)
.++.. .....+..+|.++...|++++|+..|++++...|.. ..++..+|.++...|+
T Consensus 76 ~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 145 (338)
T 3ro2_A 76 IGDQL----------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP 145 (338)
T ss_dssp HTCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSC
T ss_pred ccccH----------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchh
Confidence 11110 011226789999999999999999999999886543 3488899999999999
Q ss_pred -------------HHHHHHHHHHHHhc------CCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhC-CCCCCChhHh
Q psy12000 150 -------------YDVSQEQVAMYLAQ------KPTSRIALNLKACNTYKLFTSRAAENQLKPILVSIL-PPLIDVIPES 209 (507)
Q Consensus 150 -------------~~~A~~~~~~~l~~------~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~-~~~~~~~~~~ 209 (507)
+++|++.+++++.. .|....++..++.+++..|++++|...++++.+... ....+....+
T Consensus 146 ~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 225 (338)
T 3ro2_A 146 QDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 225 (338)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 99999999988754 222233555667777777777777777766542100 0001112235
Q ss_pred HHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHH
Q psy12000 210 RLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMAS 289 (507)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 289 (507)
+.++|.++...|++++|+..+.+. +........ ......++..+|.
T Consensus 226 ~~~l~~~~~~~g~~~~A~~~~~~a-------------------------------l~~~~~~~~---~~~~~~~~~~la~ 271 (338)
T 3ro2_A 226 YSNLGNAYIFLGEFETASEYYKKT-------------------------------LLLARQLKD---RAVEAQSCYSLGN 271 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH-------------------------------HHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-------------------------------HHHHHhhcc---hhHHHHHHHHHHH
Confidence 666777777777777776666542 222211110 0011223446899
Q ss_pred HHHhhcCHHHHHHHHHHhhhhcCCC------chHHHHHHHHHHhhCCHHHHHHHHHhhccc
Q psy12000 290 SFFLLRSFKDVILYLSSIKSYYTSD------DSFNFNFAQAKCALGQYKEAEEMFLLVQNE 344 (507)
Q Consensus 290 ~~~~~~~~~~Ai~~~~~~~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~ 344 (507)
++...|++++|+.+++++....+.. ..++..+|.+|...|++++|..+|++++..
T Consensus 272 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 272 TYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999887654322 346678999999999999999999998653
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.86 E-value=1.6e-20 Score=172.27 Aligned_cols=212 Identities=9% Similarity=0.005 Sum_probs=145.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
++.+|..+...|++++|+.+|++++..+|++..++..+|.++...|++++|+..+++++..+|++..++
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----------- 94 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAY----------- 94 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----------
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHH-----------
Confidence 678899999999999999999999999999999999999999999999999999888887776544221
Q ss_pred ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHH
Q psy12000 183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVK 262 (507)
Q Consensus 183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 262 (507)
.
T Consensus 95 ----------------------------~--------------------------------------------------- 95 (243)
T 2q7f_A 95 ----------------------------Y--------------------------------------------------- 95 (243)
T ss_dssp ----------------------------H---------------------------------------------------
T ss_pred ----------------------------H---------------------------------------------------
Confidence 1
Q ss_pred HHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000 263 AAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQ 342 (507)
Q Consensus 263 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~ 342 (507)
.+|.++...|++++|+.+++++....|++..+++.+|.++...|++++|+..|++++
T Consensus 96 -----------------------~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 152 (243)
T 2q7f_A 96 -----------------------GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152 (243)
T ss_dssp -----------------------HHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 234555556666666666666666666666666777777777777777777777765
Q ss_pred ccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhc
Q psy12000 343 NEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD 422 (507)
Q Consensus 343 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~ 422 (507)
...+.+... ...++.+++..|++++|+..|++++..
T Consensus 153 ~~~~~~~~~--------------------------------------------~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 153 ELNENDTEA--------------------------------------------RFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHCTTCHHH--------------------------------------------HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HhCCccHHH--------------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 443221110 122344556667788888888888888
Q ss_pred CCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhh
Q psy12000 423 HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNT 471 (507)
Q Consensus 423 ~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~ 471 (507)
.|+++.++..+|.+|.++|++++|+..++++++.+|+++.++..++.+.
T Consensus 189 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 189 DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 8888888888899999999999999999999999999998877666553
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.85 E-value=2.4e-20 Score=163.88 Aligned_cols=173 Identities=13% Similarity=0.047 Sum_probs=141.2
Q ss_pred cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhh
Q psy12000 99 SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNT 178 (507)
Q Consensus 99 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~ 178 (507)
.+..++.+|.+|..+|+|++|++.|+++++.+|+++.++..+|.++..+|++++|+..+++++..+|++..++..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----- 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYI----- 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHH-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHH-----
Confidence 344588999999999999999999999999999999999999999999999999999999999999988765443
Q ss_pred hhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcH
Q psy12000 179 YKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSR 258 (507)
Q Consensus 179 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 258 (507)
+|.++...+++++|...+.+....+
T Consensus 79 ----------------------------------~~~~~~~~~~~~~a~~~~~~a~~~~--------------------- 103 (184)
T 3vtx_A 79 ----------------------------------LGSANFMIDEKQAAIDALQRAIALN--------------------- 103 (184)
T ss_dssp ----------------------------------HHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred ----------------------------------HHHHHHHcCCHHHHHHHHHHHHHhC---------------------
Confidence 4444555566666655554321000
Q ss_pred HHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHH
Q psy12000 259 EMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMF 338 (507)
Q Consensus 259 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 338 (507)
|....++..+|.++...|++++|++.|+++.+.+|+++.+++++|.+|..+|++++|+.+|
T Consensus 104 -------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 104 -------------------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 1112233457899999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCCchh
Q psy12000 339 LLVQNEGLKNDY 350 (507)
Q Consensus 339 ~~~~~~~~~~~~ 350 (507)
+++++.+|.+..
T Consensus 165 ~~al~~~p~~a~ 176 (184)
T 3vtx_A 165 KKALEKEEKKAK 176 (184)
T ss_dssp HHHHHTTHHHHH
T ss_pred HHHHhCCccCHH
Confidence 999987765443
No 47
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.85 E-value=3.5e-20 Score=162.86 Aligned_cols=164 Identities=16% Similarity=0.091 Sum_probs=136.7
Q ss_pred ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000 5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG 84 (507)
Q Consensus 5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (507)
...+++.+|.+|..+|+|++|++.|+++++.+|+++++++.+|.++..+|++++|+..+.++....+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~----------- 72 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS----------- 72 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-----------
Confidence 345788899999999999999999999999999999999999999999999999999988764322211
Q ss_pred ChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000 85 DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 164 (507)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 164 (507)
+..+..+|.++...+++++|+..+.+++..+|++..++..+|.++..+|++++|++.|+++++.+
T Consensus 73 ---------------~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~ 137 (184)
T 3vtx_A 73 ---------------AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK 137 (184)
T ss_dssp ---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc
Confidence 22256778889999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHhhhhhhccChHHHHHhhHHH
Q psy12000 165 PTSRIALNLKACNTYKLFTSRAAENQLKPI 194 (507)
Q Consensus 165 p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~ 194 (507)
|+++.++..+|.++...|++++|+..++++
T Consensus 138 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 138 PGFIRAYQSIGLAYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 988876666666655555555555555544
No 48
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.85 E-value=7e-20 Score=180.78 Aligned_cols=251 Identities=13% Similarity=0.033 Sum_probs=182.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHh---CC---chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLD---HK---DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC 176 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~---~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~ 176 (507)
++.+|.++...|++++|+..|++++.. .| ....+++.+|.+|..+|++++|+..+++++...+....
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~------- 178 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA------- 178 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST-------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc-------
Confidence 445999999999999999999999987 23 35688999999999999999999999999876544321
Q ss_pred hhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccC
Q psy12000 177 NTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTG 256 (507)
Q Consensus 177 ~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~ 256 (507)
+ .+....++.++|.+|...|++++|+..+.+.
T Consensus 179 -------~------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----------------------- 210 (383)
T 3ulq_A 179 -------Y------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKA----------------------- 210 (383)
T ss_dssp -------T------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------
T ss_pred -------c------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-----------------------
Confidence 0 0112246788999999999999998888643
Q ss_pred cHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhh-----c-CCCchHHHHHHHHHHhhCC
Q psy12000 257 SREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSY-----Y-TSDDSFNFNFAQAKCALGQ 330 (507)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~-----~-~~~~~~~~~lg~~~~~~g~ 330 (507)
+..+..... .+....++..+|.+|..+|++++|+.+++++... + |....+++++|.+|..+|+
T Consensus 211 --------l~~~~~~~~---~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 279 (383)
T 3ulq_A 211 --------YSMAEAEKQ---PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK 279 (383)
T ss_dssp --------HHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC
T ss_pred --------HHHHHHcCC---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC
Confidence 111111100 0011123456899999999999999999998763 3 4455678899999999999
Q ss_pred HHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhh--
Q psy12000 331 YKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCH-- 408 (507)
Q Consensus 331 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~-- 408 (507)
+++|+.+|++++.... +.++.... ..+ ..++.++...|+
T Consensus 280 ~~~A~~~~~~al~~~~----------------------------~~~~~~~~-~~~----------~~l~~~~~~~~~~~ 320 (383)
T 3ulq_A 280 IDKAHEYHSKGMAYSQ----------------------------KAGDVIYL-SEF----------EFLKSLYLSGPDEE 320 (383)
T ss_dssp HHHHHHHHHHHHHHHH----------------------------HHTCHHHH-HHH----------HHHHHHHTSSCCHH
T ss_pred HHHHHHHHHHHHHHHH----------------------------HcCCHHHH-HHH----------HHHHHHHhCCCcHH
Confidence 9999999999864211 11110000 000 113345555555
Q ss_pred -HHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCC
Q psy12000 409 -YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 459 (507)
Q Consensus 409 -~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~ 459 (507)
+++|+.++++. ...|....+...+|.+|.++|++++|...+++++++...
T Consensus 321 ~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 321 AIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 88899998887 455666678888999999999999999999999886543
No 49
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.84 E-value=1.9e-19 Score=181.40 Aligned_cols=346 Identities=11% Similarity=-0.013 Sum_probs=231.6
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYY---DVSQEQVAMYLAQKPTSRIALNLKACNTYK 180 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~ 180 (507)
..+|.++...|++++|+..|+++.+. +++++++.+|.+|...|++ ++|++.|++++.. ++.+.+.++.+++.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 35788999999999999999999765 5678888999999999999 9999999999866 55666777775554
Q ss_pred cc-----ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHH---HHHHHhc-CCCChHHHHHHHHHHHHh
Q psy12000 181 LF-----TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEA---FDLIKNL-EPSVPQEYILKAVVQVTI 251 (507)
Q Consensus 181 ~~-----~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A---~~~l~~~-~~~~~~~~~~~~~~~~~~ 251 (507)
.+ ++++|...+++..+ +.++.++++||.+|...+..+++ ...+.+. .+.++......|.++...
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~-------~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFA-------NGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQ 154 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHH-------TTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcC
Confidence 44 67889988888753 23345889999999987765544 3333332 234566667777777766
Q ss_pred hhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhc---CHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhh
Q psy12000 252 GQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLR---SFKDVILYLSSIKSYYTSDDSFNFNFAQAKCAL 328 (507)
Q Consensus 252 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~ 328 (507)
+... ...+.+..+++...... + .+...||.+|...| ++++|+.+|+++....|.....++++|.+|...
T Consensus 155 ~~~~---~~~~~a~~~~~~a~~~~--~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 155 GTYD---QHLDDVERICKAALNTT--D---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDA 226 (452)
T ss_dssp TCGG---GGHHHHHHHHHHHTTTC--T---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCG
T ss_pred CCcc---cCHHHHHHHHHHHHcCC--H---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 6543 34455666776554322 1 25668999999999 999999999999988877766668899999876
Q ss_pred ----CCHHHHHHHHHhhcccCCCchhhhhhhhccc-C--ccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHH
Q psy12000 329 ----GQYKEAEEMFLLVQNEGLKNDYVYISHLTKC-S--PSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLAS 401 (507)
Q Consensus 329 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 401 (507)
+++++|+.+|+++. ++.......+ +.+ + ...+++++|+..+.+.-+ ...++....+|.
T Consensus 227 ~~~~~d~~~A~~~~~~aa-~g~~~a~~~L---g~~~~~~~~~~d~~~A~~~~~~Aa~-----------~g~~~A~~~Lg~ 291 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIA-PGYPASWVSL---AQLLYDFPELGDVEQMMKYLDNGRA-----------ADQPRAELLLGK 291 (452)
T ss_dssp GGSSCCHHHHHHHHHHHG-GGSTHHHHHH---HHHHHHSGGGCCHHHHHHHHHHHHH-----------TTCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHc-CCCHHHHHHH---HHHHHhCCCCCCHHHHHHHHHHHHH-----------CCCHHHHHHHHH
Confidence 79999999999988 5544444443 333 1 235566666655544211 012344566777
Q ss_pred HHHhHh-----hHHHHHHHHHHHhhcCCchhhhHHHHHhhccc----cccchhHHHHHHHHHhcCCCchhhhhHHHhhhh
Q psy12000 402 IHFLRC-----HYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY 472 (507)
Q Consensus 402 ~~~~~~-----~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~ 472 (507)
++. .| ++++|+.+|+++. |+++.+.+++|.+|.. ..++++|+..|+++.+ ++++.+.+.+|..+.
T Consensus 292 ~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 292 LYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFS 365 (452)
T ss_dssp HHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHH
T ss_pred HHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHH
Confidence 766 55 9999999999999 9999999999999987 4499999999999977 678888888998877
Q ss_pred h----cCChHHHHHHHHHHHHh
Q psy12000 473 K----LFTSRAAENQLKPILVS 490 (507)
Q Consensus 473 ~----~~~~~~~~~~~~~~~~~ 490 (507)
. ..+...|..-|+...+.
T Consensus 366 ~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 366 QGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp SCTTBCCCHHHHHHHHHHHHTT
T ss_pred hCCCCCCCHHHHHHHHHHHHHC
Confidence 4 23556666666655544
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.84 E-value=4.3e-20 Score=172.86 Aligned_cols=254 Identities=12% Similarity=-0.009 Sum_probs=145.5
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHh----CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 107 ASIHFLRCHYQEAIDIYKRILLD----HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 107 a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
+.+....|++++|+..|++++.. .|.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence 33445568899999999999987 35677888999999999999999999999999999988776666666666666
Q ss_pred ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHH
Q psy12000 183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVK 262 (507)
Q Consensus 183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 262 (507)
++++|...++++++ ..|..+.++..+|.+|...|++++|+..+.+....+|.
T Consensus 92 ~~~~A~~~~~~al~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----------------------- 143 (275)
T 1xnf_A 92 NFDAAYEAFDSVLE-----LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN----------------------- 143 (275)
T ss_dssp CHHHHHHHHHHHHH-----HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------------
T ss_pred CHHHHHHHHHHHHh-----cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----------------------
Confidence 66666655555432 12223445555666666666666665555432100000
Q ss_pred HHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000 263 AAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQ 342 (507)
Q Consensus 263 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~ 342 (507)
..... ....+....|++++|+.+++++....|++... +.++.++...++.++|+..+++++
T Consensus 144 -----------------~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~ 204 (275)
T 1xnf_A 144 -----------------DPFRS-LWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG-WNIVEFYLGNISEQTLMERLKADA 204 (275)
T ss_dssp -----------------CHHHH-HHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHC
T ss_pred -----------------ChHHH-HHHHHHHHhcCHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHhcCHHHHHHHHHHHh
Confidence 00001 11222344566666666665555555544332 335555556666666666666554
Q ss_pred ccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhc
Q psy12000 343 NEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD 422 (507)
Q Consensus 343 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~ 422 (507)
...+... .........++.++...|++++|+..|++++..
T Consensus 205 ~~~~~~~----------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 205 TDNTSLA----------------------------------------EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp CSHHHHH----------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccccccc----------------------------------------ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 3221000 000011233455666666667777777776666
Q ss_pred CCchhhhHHHHHhhccccccchhHHHHH
Q psy12000 423 HKDLLALNVYGAMCYYKLDYYDVSQEQV 450 (507)
Q Consensus 423 ~p~~~~~~~~la~~y~~~g~~~~A~~~~ 450 (507)
+|++... .+.++..+|++++|++.+
T Consensus 245 ~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 NVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CCTTCHH---HHHHHHHHHHHHHC----
T ss_pred CchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 6655433 245566666666666655
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.84 E-value=3.7e-19 Score=164.40 Aligned_cols=66 Identities=12% Similarity=-0.023 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|++.+++++..+|++.
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 105 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA 105 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH
Confidence 678888888889999999999999888888888888888888889999999888888887777654
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.84 E-value=5.1e-20 Score=168.99 Aligned_cols=205 Identities=12% Similarity=0.022 Sum_probs=164.1
Q ss_pred cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000 6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD 85 (507)
Q Consensus 6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (507)
....+.+|.+++..|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..++++....+.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------- 89 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS------------- 89 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-------------
Confidence 4556678999999999999999999999999999999999999999999999999999876432111
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12000 86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP 165 (507)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 165 (507)
.+..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|
T Consensus 90 -------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 156 (243)
T 2q7f_A 90 -------------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156 (243)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred -------------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 1223667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHH
Q psy12000 166 TSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEY 241 (507)
Q Consensus 166 ~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~ 241 (507)
+++.++..++.+++..|++++|...++.+.+ ..+..+.++..+|.+|...|++++|+..+++. .|.++..+
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 230 (243)
T 2q7f_A 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTE-----QDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLAL 230 (243)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHH
Confidence 9999999999999999999999999998753 23456778999999999999999999988764 56665543
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.83 E-value=1.1e-18 Score=157.87 Aligned_cols=66 Identities=23% Similarity=0.117 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|++.+++++..+|++.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 76 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA 76 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 567777777788888888888888877777777777778888778888888777777777666554
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.82 E-value=9.4e-19 Score=177.51 Aligned_cols=212 Identities=9% Similarity=-0.027 Sum_probs=170.4
Q ss_pred hhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhh
Q psy12000 113 RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYY-DVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQL 191 (507)
Q Consensus 113 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l 191 (507)
.+++++|+..+++.....|+...+++.+|.++...|++ ++|++.|+++++.+|++..+
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a--------------------- 139 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEA--------------------- 139 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHH---------------------
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHH---------------------
Confidence 45577777788877777788888888888888888888 88888888877777765421
Q ss_pred HHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHh
Q psy12000 192 KPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLV 271 (507)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 271 (507)
T Consensus 140 -------------------------------------------------------------------------------- 139 (474)
T 4abn_A 140 -------------------------------------------------------------------------------- 139 (474)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhh---------CCHHHHHHHHHhhc
Q psy12000 272 GSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCAL---------GQYKEAEEMFLLVQ 342 (507)
Q Consensus 272 ~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~~~ 342 (507)
+..+|.+|...|++++|+.+|+++....|+ ..++.++|.++..+ |++++|+..|++++
T Consensus 140 ------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al 206 (474)
T 4abn_A 140 ------------WNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV 206 (474)
T ss_dssp ------------HHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH
Confidence 113566777778888888888888888887 47788899999999 99999999999988
Q ss_pred ccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhH--------hhHHHHHH
Q psy12000 343 NEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLR--------CHYQEAID 414 (507)
Q Consensus 343 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~--------~~~~~Ai~ 414 (507)
..++.+...+ ..++.++... |++++|+.
T Consensus 207 ~~~p~~~~~~--------------------------------------------~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 207 QMDVLDGRSW--------------------------------------------YILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp HHCTTCHHHH--------------------------------------------HHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhCCCCHHHH--------------------------------------------HHHHHHHHHHHHhhccccchHHHHHH
Confidence 6655433222 1123344444 88999999
Q ss_pred HHHHHhhcCC---chhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHH
Q psy12000 415 IYKRILLDHK---DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAEN 482 (507)
Q Consensus 415 ~~~~~l~~~p---~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~ 482 (507)
.|++++..+| +++.+++.+|.+|..+|++++|+..|+++++++|+++.++..++.++..++..+.|..
T Consensus 243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999999999999999999999999999988777666665
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.82 E-value=2.4e-18 Score=161.24 Aligned_cols=230 Identities=10% Similarity=-0.009 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000 100 LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQKPTSRIALNLKA 175 (507)
Q Consensus 100 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~a~~~~a 175 (507)
+..++.+|.++...|++++|+.+|++++. |+++.+++.+|.++.. .+++++|+..|+++++.+ +
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-------- 73 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y-------- 73 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C--------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C--------
Confidence 44577888888888888888888888887 6777888888888888 888888888888876543 2
Q ss_pred hhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHh----hccHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q psy12000 176 CNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLK----QEEHQEAFDLIKNLEPSVPQEYILKAVVQVTI 251 (507)
Q Consensus 176 ~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 251 (507)
+.++.++|.+|.. .+++++|+..+++....
T Consensus 74 -------------------------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--------------- 107 (273)
T 1ouv_A 74 -------------------------------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--------------- 107 (273)
T ss_dssp -------------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---------------
T ss_pred -------------------------------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc---------------
Confidence 2456677777777 88888888777542100
Q ss_pred hhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHh----hcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHh
Q psy12000 252 GQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFL----LRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCA 327 (507)
Q Consensus 252 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~ 327 (507)
+...++..+|.+|.. .+++++|+.+++++.+.. ++.+.+++|.+|..
T Consensus 108 ---------------------------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 108 ---------------------------KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDA 158 (273)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred ---------------------------CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence 011233467888888 999999999999988764 55678889999999
Q ss_pred ----hCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHH
Q psy12000 328 ----LGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIH 403 (507)
Q Consensus 328 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 403 (507)
.+++++|+.+|+++++.++... ...++.++
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~~~~a----------------------------------------------~~~lg~~~ 192 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLKDSPG----------------------------------------------CFNAGNMY 192 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCHHH----------------------------------------------HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHH----------------------------------------------HHHHHHHH
Confidence 9999999999999865432111 12234455
Q ss_pred Hh----HhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccc----cccchhHHHHHHHHHhcCCCchhhh
Q psy12000 404 FL----RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQKPTSRIAL 464 (507)
Q Consensus 404 ~~----~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~----~g~~~~A~~~~~~~l~~~P~~~~a~ 464 (507)
.. .+++++|+.+|+++++..| +...+.+|.+|.+ .|++++|+..|+++++..|+++...
T Consensus 193 ~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 193 HHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp HHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred HcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 55 6899999999999999876 6778889999999 9999999999999999999877653
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.81 E-value=1.9e-18 Score=159.56 Aligned_cols=202 Identities=12% Similarity=-0.061 Sum_probs=176.9
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE 86 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (507)
.+.+.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++....+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-------------- 103 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-------------- 103 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--------------
Confidence 445678999999999999999999999999999999999999999999999999999876432111
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000 87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILL--DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 164 (507)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 164 (507)
.+..+..+|.++...|++++|+.+|++++. ..|.+..++..+|.++...|++++|+..+++++..+
T Consensus 104 ------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 104 ------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171 (252)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 122366789999999999999999999999 889999999999999999999999999999999999
Q ss_pred CCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChH
Q psy12000 165 PTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQ 239 (507)
Q Consensus 165 p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~ 239 (507)
|.+..++..++.+++..|++++|...++.+.+ ..+..+.++..++.++...|++++|...++++ .|.++.
T Consensus 172 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQ-----GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 99999999999999999999999999988752 44566788899999999999999999988765 455543
No 57
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.80 E-value=1.9e-17 Score=150.61 Aligned_cols=212 Identities=8% Similarity=-0.017 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhh
Q psy12000 100 LEEQLCLASIHFLRCHYQEAIDIYKRILLDHK-DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNT 178 (507)
Q Consensus 100 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~ 178 (507)
|..++.+|.+++..|++++|+..|++++..+| .+..+++++|.++..+|++++|++.+++++..+|++..+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-------- 78 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANA-------- 78 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHH--------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHH--------
Confidence 44578899999999999999999999999998 888999999999999999999999999999999987654
Q ss_pred hhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhcc
Q psy12000 179 YKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDT 255 (507)
Q Consensus 179 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~ 255 (507)
+..+|.+|..+|++++|+..+++. .|.++......+
T Consensus 79 -------------------------------~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~---------- 117 (228)
T 4i17_A 79 -------------------------------YIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYA---------- 117 (228)
T ss_dssp -------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH----------
T ss_pred -------------------------------HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH----------
Confidence 445666666777777777666543 444443211111
Q ss_pred CcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCC--CchHHHHHHHHHHhhCCHHH
Q psy12000 256 GSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTS--DDSFNFNFAQAKCALGQYKE 333 (507)
Q Consensus 256 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~~ 333 (507)
.++..+|.++...|++++|+.+++++.+.+|+ ...+++++|.+|..+|+.
T Consensus 118 --------------------------~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~-- 169 (228)
T 4i17_A 118 --------------------------IYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD-- 169 (228)
T ss_dssp --------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH--
T ss_pred --------------------------HHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH--
Confidence 12335789999999999999999999999998 778899999999877643
Q ss_pred HHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHH
Q psy12000 334 AEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 413 (507)
Q Consensus 334 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai 413 (507)
.++++..........+. +......+.|++|+
T Consensus 170 ---~~~~a~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~A~ 200 (228)
T 4i17_A 170 ---VLRKATPLASSNKEKYA----------------------------------------------SEKAKADAAFKKAV 200 (228)
T ss_dssp ---HHHHHGGGTTTCHHHHH----------------------------------------------HHHHHHHHHHHHHH
T ss_pred ---HHHHHHhcccCCHHHHH----------------------------------------------HHHHHHHHHHHHHH
Confidence 34444332211111000 01112236688888
Q ss_pred HHHHHHhhcCCchhhhHHHHHhhc
Q psy12000 414 DIYKRILLDHKDLLALNVYGAMCY 437 (507)
Q Consensus 414 ~~~~~~l~~~p~~~~~~~~la~~y 437 (507)
.+|+++++.+|+++.+...++.+.
T Consensus 201 ~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 201 DYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHH
Confidence 888888888888887776666543
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=4e-18 Score=162.87 Aligned_cols=253 Identities=9% Similarity=0.014 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHh-cCCCcHHHHHHHhhhhhhc
Q psy12000 117 QEAIDIYKRILLDHKDLLALNVYGAMCYYK-------LDYY-------DVSQEQVAMYLA-QKPTSRIALNLKACNTYKL 181 (507)
Q Consensus 117 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~~l~-~~p~~~~a~~~~a~~~~~~ 181 (507)
++|+..|++++..+|+++++++.+|..+.. .|++ ++|+..|++++. .+|++..++..++.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999988874 5886 899999999999 6999998888888888888
Q ss_pred cChHHHHHhhHHHHHhhCCCCCCChhH-hHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHH
Q psy12000 182 FTSRAAENQLKPILVSILPPLIDVIPE-SRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREM 260 (507)
Q Consensus 182 ~~~~~A~~~l~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 260 (507)
|++++|...|+++++ ..|..+. ++.++|.++.+.|++++|...+.+.....|..
T Consensus 113 ~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~-------------------- 167 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA-----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR-------------------- 167 (308)
T ss_dssp TCHHHHHHHHHHHHT-----SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC--------------------
T ss_pred CCHHHHHHHHHHHHh-----ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--------------------
Confidence 899999988887752 3455555 88889999989999999888886542222210
Q ss_pred HHHHHHHHHHhCCCcccccchhhhhHHHHHHH-hhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHH
Q psy12000 261 VKAAQALFQLVGSSQSECDTVPGRQCMASSFF-LLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFL 339 (507)
Q Consensus 261 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 339 (507)
...+...+.... ..|++++|+.+|+++....|+++.++..+|..+..+|++++|...|+
T Consensus 168 --------------------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 227 (308)
T 2ond_A 168 --------------------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 227 (308)
T ss_dssp --------------------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 011111222222 36999999999999999999998899999999999999999999999
Q ss_pred hhccc---CCC-chhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHH
Q psy12000 340 LVQNE---GLK-NDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDI 415 (507)
Q Consensus 340 ~~~~~---~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~ 415 (507)
+++.. ++. ....+ ..++......|++++|..+
T Consensus 228 ~al~~~~l~p~~~~~l~--------------------------------------------~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 228 RVLTSGSLPPEKSGEIW--------------------------------------------ARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHSSSSCGGGCHHHH--------------------------------------------HHHHHHHHHHSCHHHHHHH
T ss_pred HHHhccCCCHHHHHHHH--------------------------------------------HHHHHHHHHcCCHHHHHHH
Confidence 99764 211 11111 1122234445899999999
Q ss_pred HHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhh
Q psy12000 416 YKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN 470 (507)
Q Consensus 416 ~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~ 470 (507)
++++++..|++..... ++.+..+ ..++.++|+++.++|.+|..
T Consensus 264 ~~~a~~~~p~~~~~~~-~~~~~~r-----------~~~l~~~P~~~~~ln~lgY~ 306 (308)
T 2ond_A 264 EKRRFTAFREEYEGKE-TALLVDR-----------YKFMDLYPCSASELKALGYK 306 (308)
T ss_dssp HHHHHHHTTTTTSSCH-HHHHHTT-----------TCBTTBCSSCHHHHHTTTCC
T ss_pred HHHHHHHcccccccch-HHHHHHH-----------HHhcccCCCCHHHHHhcCCC
Confidence 9999999998765332 1332111 16778999999999988864
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.80 E-value=5.3e-19 Score=179.31 Aligned_cols=196 Identities=9% Similarity=-0.107 Sum_probs=175.1
Q ss_pred cchhhHHHHHHHhhcCH-HHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000 6 SLTDAWLGYCHFHLGQY-KQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG 84 (507)
Q Consensus 6 ~~~~~~lg~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (507)
....+.+|.++...|+| ++|+..|+++++.+|+++++|+.+|.++..+|++++|+.+++++....+..
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------- 170 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNK----------- 170 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCH-----------
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCH-----------
Confidence 34566789999999999 999999999999999999999999999999999999999999886543321
Q ss_pred ChhHHHHHHHHHhhcHHHHHHHHHHHHHh---------hcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhc--------
Q psy12000 85 DEKSLMEYHQKLEDSLEEQLCLASIHFLR---------CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKL-------- 147 (507)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-------- 147 (507)
..+..+|.++... |++++|+..|++++..+|++..+++.+|.++..+
T Consensus 171 ----------------~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 171 ----------------VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp ----------------HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred ----------------HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcccc
Confidence 1255678888888 9999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCC---CcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHH
Q psy12000 148 DYYDVSQEQVAMYLAQKP---TSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQ 224 (507)
Q Consensus 148 g~~~~A~~~~~~~l~~~p---~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (507)
|++++|+..|++++..+| +++.++..+|.++...|++++|...++++.+ ..|..+.++.+++.++...|+++
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----l~p~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA-----LDPAWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999998753 34667789999999999999999
Q ss_pred HHHHHHHhc
Q psy12000 225 EAFDLIKNL 233 (507)
Q Consensus 225 ~A~~~l~~~ 233 (507)
+|+..+.++
T Consensus 310 eAi~~~~~~ 318 (474)
T 4abn_A 310 SLLESKGKT 318 (474)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHhccc
Confidence 999877665
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.80 E-value=1.1e-17 Score=156.70 Aligned_cols=215 Identities=11% Similarity=-0.024 Sum_probs=167.6
Q ss_pred cCChhHHHHHHH-HHh-hcHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh----cCCHHH
Q psy12000 83 LGDEKSLMEYHQ-KLE-DSLEEQLCLASIHFL----RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDV 152 (507)
Q Consensus 83 ~~~~~~~~~~~~-~l~-~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~ 152 (507)
.++.+.+..+.+ .+. ..+..++.+|.++.. .|++++|+.+|++++..+ ++.+++.+|.+|.. .+++++
T Consensus 19 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~ 96 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNK 96 (273)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHH
Confidence 344444444333 333 345558999999999 999999999999999885 78899999999999 999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHhhhhhh----ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHh----hccHH
Q psy12000 153 SQEQVAMYLAQKPTSRIALNLKACNTYK----LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLK----QEEHQ 224 (507)
Q Consensus 153 A~~~~~~~l~~~p~~~~a~~~~a~~~~~----~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 224 (507)
|++.|++++..+ ++.++..++.++.. .+++++|...++++.+ ...+.++.++|.+|.. .++++
T Consensus 97 A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-------~~~~~a~~~lg~~~~~~~~~~~~~~ 167 (273)
T 1ouv_A 97 ALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-------LNDGDGCTILGSLYDAGRGTPKDLK 167 (273)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-------cCcHHHHHHHHHHHHcCCCCCCCHH
Confidence 999999999874 67788888888887 8888888888887753 1145677888888887 78888
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHh----hcCHHHH
Q psy12000 225 EAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFL----LRSFKDV 300 (507)
Q Consensus 225 ~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A 300 (507)
+|+..+++.... +...++..+|.+|.. .+++++|
T Consensus 168 ~A~~~~~~a~~~------------------------------------------~~~~a~~~lg~~~~~g~~~~~~~~~A 205 (273)
T 1ouv_A 168 KALASYDKACDL------------------------------------------KDSPGCFNAGNMYHHGEGATKNFKEA 205 (273)
T ss_dssp HHHHHHHHHHHT------------------------------------------TCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred HHHHHHHHHHHC------------------------------------------CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 887777542100 011234468899999 9999999
Q ss_pred HHHHHHhhhhcCCCchHHHHHHHHHHh----hCCHHHHHHHHHhhcccCCCchhhh
Q psy12000 301 ILYLSSIKSYYTSDDSFNFNFAQAKCA----LGQYKEAEEMFLLVQNEGLKNDYVY 352 (507)
Q Consensus 301 i~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 352 (507)
+.+++++.+..| +.+.+++|.+|.. .|++++|+.+|++++..++.+....
T Consensus 206 ~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 206 LARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999987754 5678889999999 9999999999999987766544333
No 61
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.80 E-value=7.1e-18 Score=166.09 Aligned_cols=248 Identities=12% Similarity=0.023 Sum_probs=178.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhC------CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDH------KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC 176 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~ 176 (507)
++.+|..+...|++++|+..|++++... |....+++.+|.+|..+|++++|+..+++++...+....
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~------- 176 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL------- 176 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT-------
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC-------
Confidence 5678999999999999999999999874 235678999999999999999999999999876544321
Q ss_pred hhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccC
Q psy12000 177 NTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTG 256 (507)
Q Consensus 177 ~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~ 256 (507)
+ .+....++.++|.+|...|++++|+..+.+.
T Consensus 177 -------~------------------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a----------------------- 208 (378)
T 3q15_A 177 -------Y------------------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAA----------------------- 208 (378)
T ss_dssp -------C------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------
T ss_pred -------c------------------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH-----------------------
Confidence 0 0012346788999999999999999887643
Q ss_pred cHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhh-----hcCCCchHHHHHHHHHHhhCCH
Q psy12000 257 SREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKS-----YYTSDDSFNFNFAQAKCALGQY 331 (507)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~-----~~~~~~~~~~~lg~~~~~~g~~ 331 (507)
+...+..... .....++..+|.+|..+|++++|+.+++++.. .+|....+++++|.++..+|++
T Consensus 209 --------l~~~~~~~~~---~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~ 277 (378)
T 3q15_A 209 --------LELAMDIQND---RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQT 277 (378)
T ss_dssp --------HHHHHHTTCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCH
T ss_pred --------HHHHHHcCCH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCH
Confidence 1111111100 01122345789999999999999999999887 5565667788999999999999
Q ss_pred HHHHHHHHhhcccCCCc-hhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhh--
Q psy12000 332 KEAEEMFLLVQNEGLKN-DYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCH-- 408 (507)
Q Consensus 332 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~-- 408 (507)
++|+.++++++...... ...+.. .. ..++.++...++
T Consensus 278 ~~A~~~~~~al~~~~~~~~~~~~~------------------------------~~----------~~l~~ly~~~~~~~ 317 (378)
T 3q15_A 278 QKAFQFIEEGLDHITARSHKFYKE------------------------------LF----------LFLQAVYKETVDER 317 (378)
T ss_dssp HHHHHHHHHHHHHCCTTCCSCHHH------------------------------HH----------HHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHH------------------------------HH----------HHHHHHHhCCCcHH
Confidence 99999999986432110 000000 00 011122222333
Q ss_pred -HHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcC
Q psy12000 409 -YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 457 (507)
Q Consensus 409 -~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~ 457 (507)
+.+|+.++++. ...|+...+...+|.+|.++|++++|...|+++++..
T Consensus 318 ~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 318 KIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 78888888873 3445566677889999999999999999999998753
No 62
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.80 E-value=4.2e-18 Score=153.95 Aligned_cols=203 Identities=16% Similarity=0.073 Sum_probs=174.3
Q ss_pred cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000 6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD 85 (507)
Q Consensus 6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (507)
..+.+.+|.+++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++....+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------- 74 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD------------- 74 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------------
Confidence 3455668999999999999999999999999999999999999999999999999999876432111
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHh-hcHHHHHHHHHHHHH--hCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 86 EKSLMEYHQKLEDSLEEQLCLASIHFLR-CHYQEAIDIYKRILL--DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
.+..+..+|.++... |++++|+..|++++. ..|....+++.+|.++...|++++|+..+++++.
T Consensus 75 -------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 75 -------------SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp -------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122356789999999 999999999999999 6778889999999999999999999999999999
Q ss_pred cCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCC-ChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCCh
Q psy12000 163 QKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLID-VIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVP 238 (507)
Q Consensus 163 ~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~ 238 (507)
.+|+++.++..++.++...|++++|...++.+.+ ..| ..+..+..++.++...|++++|...++.+ .|.++
T Consensus 142 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 142 AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQS-----RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999999988753 234 55677888888899999999998877654 55555
Q ss_pred H
Q psy12000 239 Q 239 (507)
Q Consensus 239 ~ 239 (507)
.
T Consensus 217 ~ 217 (225)
T 2vq2_A 217 E 217 (225)
T ss_dssp H
T ss_pred H
Confidence 4
No 63
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=8.4e-16 Score=165.54 Aligned_cols=391 Identities=12% Similarity=0.019 Sum_probs=256.5
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCC----ChhhHH---------------------------HHHHHHHhhccHHHHH
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNP----PEDTEF---------------------------NIASCYFYLGMYLQAN 60 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~---------------------------~la~~~~~~g~~~eA~ 60 (507)
....|...|++.+|++.|++++ ..|+ +.+.-. -+|.++..+|.++||.
T Consensus 991 ~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf 1069 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAF 1069 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHH
Confidence 5667789999999999999998 4444 221111 2488899999999999
Q ss_pred HHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHH
Q psy12000 61 QILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYG 140 (507)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 140 (507)
.+|+++.........+ ....++.+++.++...+ ..+..++.+|.++...|++++|++.|.++ ++++.+..+
T Consensus 1070 ~IYkKa~~~~~A~~VL---ie~i~nldrAiE~Aerv-n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eV 1140 (1630)
T 1xi4_A 1070 AIFRKFDVNTSAVQVL---IEHIGNLDRAYEFAERC-NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEV 1140 (1630)
T ss_pred HHHHHcCCHHHHHHHH---HHHHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHH
Confidence 9999985221111111 11233334444433333 33566999999999999999999999775 778889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhh
Q psy12000 141 AMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQ 220 (507)
Q Consensus 141 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (507)
|.++.+.|+|++|+++|..+.+..|+... ..-++..+.+.++.+.....+. ......+..+|..+...
T Consensus 1141 a~~~~~lGkyEEAIeyL~mArk~~~e~~I-dt~LafaYAKl~rleele~fI~-----------~~n~ad~~~iGd~le~e 1208 (1630)
T 1xi4_A 1141 VQAANTSGNWEELVKYLQMARKKARESYV-ETELIFALAKTNRLAELEEFIN-----------GPNNAHIQQVGDRCYDE 1208 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhcccccc-cHHHHHHHHhhcCHHHHHHHHh-----------CCCHHHHHHHHHHHHhc
Confidence 99999999999999999999987755421 1125566667777664332211 12335677899999999
Q ss_pred ccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHH
Q psy12000 221 EEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDV 300 (507)
Q Consensus 221 ~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 300 (507)
|+|++|...+.+. ..|...+.++..+|+ ++.|++.+++..+ ..+|...+.+....|+|..|
T Consensus 1209 g~YeeA~~~Y~kA-----~ny~rLA~tLvkLge-------~q~AIEaarKA~n-------~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1209 KMYDAAKLLYNNV-----SNFGRLASTLVHLGE-------YQAAVDGARKANS-------TRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred CCHHHHHHHHHhh-----hHHHHHHHHHHHhCC-------HHHHHHHHHHhCC-------HHHHHHHHHHHhhhhHHHHH
Confidence 9999999999875 356667777877775 5566666654432 23455677888889999999
Q ss_pred HHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhh--hhhhcccCccchhhhHHHHHHHHcCC
Q psy12000 301 ILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVY--ISHLTKCSPSRAKTRLSFHLSHKLGD 378 (507)
Q Consensus 301 i~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~ 378 (507)
..+...+. . ++..+..++..|...|.+++|+..+++++..++.+...+ ++. ..+-++.++..++.++|.+...
T Consensus 1270 ~~cgl~Ii-v---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELai-LyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1270 QMCGLHIV-V---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI-LYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHHHhhh-c---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHH-HHHhCCHHHHHHHHHHHHHhcc
Confidence 98665422 2 233455788999999999999999999987774433333 221 2233566777777777776666
Q ss_pred cHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHh------------hcCCchhhhHHHHHhhccccccchhH
Q psy12000 379 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL------------LDHKDLLALNVYGAMCYYKLDYYDVS 446 (507)
Q Consensus 379 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l------------~~~p~~~~~~~~la~~y~~~g~~~~A 446 (507)
.++.+...... .-+..+..+|...|+|+.|+...-... -..+.++++++....-|. +..-++
T Consensus 1345 i~k~~r~~e~~----~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl--~~~P~~ 1418 (1630)
T 1xi4_A 1345 IPKVLRAAEQA----HLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLL 1418 (1630)
T ss_pred cchHhHHHHHH----HHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH--hhChHH
Confidence 55443332221 112333445555688888883322221 124666777766554444 333344
Q ss_pred HHHHHHHH
Q psy12000 447 QEQVAMYL 454 (507)
Q Consensus 447 ~~~~~~~l 454 (507)
+..+..++
T Consensus 1419 lndLl~~l 1426 (1630)
T 1xi4_A 1419 LNDLLMVL 1426 (1630)
T ss_pred HHHHHHHh
Confidence 44444444
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.79 E-value=2e-18 Score=157.13 Aligned_cols=201 Identities=12% Similarity=0.026 Sum_probs=162.3
Q ss_pred ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhc
Q psy12000 5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPN-PPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKL 83 (507)
Q Consensus 5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~ 83 (507)
+++..+..|.+++..|+|++|+..|+++++.+| .+..+++.+|.++..+|++++|+..++++....+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------- 75 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL---------- 75 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH----------
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch----------
Confidence 456778899999999999999999999999998 888999999999999999999999999875433321
Q ss_pred CChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh-------HHHHHHHHHHHhcCCHHHHHHH
Q psy12000 84 GDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL-------ALNVYGAMCYYKLDYYDVSQEQ 156 (507)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~ 156 (507)
+..+..+|.++..+|++++|+..|++++..+|+++ .+++.+|.++..+|++++|++.
T Consensus 76 ----------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 139 (228)
T 4i17_A 76 ----------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEEN 139 (228)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHH
Confidence 22367899999999999999999999999999988 6799999999999999999999
Q ss_pred HHHHHhcCCC--cHHHHHHHhhhhhhccCh--HHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000 157 VAMYLAQKPT--SRIALNLKACNTYKLFTS--RAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN 232 (507)
Q Consensus 157 ~~~~l~~~p~--~~~a~~~~a~~~~~~~~~--~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~ 232 (507)
|+++++.+|+ ++.++..+|.+++..|+. +.+.. . .+..+. ...+......+.|++|+..+++
T Consensus 140 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~--------~----~~~~~~--~~~~~~~~~~~~~~~A~~~~~~ 205 (228)
T 4i17_A 140 YKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATP--------L----ASSNKE--KYASEKAKADAAFKKAVDYLGE 205 (228)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGG--------G----TTTCHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHh--------c----ccCCHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 889999899988776643 22221 1 111111 1233445567889999998876
Q ss_pred c---CCCChHHHHHHH
Q psy12000 233 L---EPSVPQEYILKA 245 (507)
Q Consensus 233 ~---~~~~~~~~~~~~ 245 (507)
. .|.++......+
T Consensus 206 a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 206 AVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHCTTCHHHHHHHH
T ss_pred HhhcCCCCHHHHHHHH
Confidence 4 677776554443
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.79 E-value=2.7e-18 Score=169.36 Aligned_cols=246 Identities=13% Similarity=0.141 Sum_probs=177.2
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhcC---CCC---ChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhc
Q psy12000 10 AWLGYCHFHLGQYKQALGIYETLRHL---PNP---PEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKL 83 (507)
Q Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~~l~~---~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~ 83 (507)
+..|.+++..|+|++|+..|+++++. .|+ .+.+++.+|.++..+|++++|+..++++..... ..
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~----------~~ 176 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK----------EH 176 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------TC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------hC
Confidence 34899999999999999999999987 233 447899999999999999999999988742111 01
Q ss_pred CChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch------hHHHHHHHHHHHhcCCHHHHHHHH
Q psy12000 84 GDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL------LALNVYGAMCYYKLDYYDVSQEQV 157 (507)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~ 157 (507)
++... .....+..+|.++...|++++|+.+|++++...|.. ..++.++|.+|..+|++++|++.+
T Consensus 177 ~~~~~---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 247 (383)
T 3ulq_A 177 EAYNI---------RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF 247 (383)
T ss_dssp STTHH---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccchH---------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 00000 001226789999999999999999999999886533 358899999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCC
Q psy12000 158 AMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSV 237 (507)
Q Consensus 158 ~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~ 237 (507)
++++...+.. ...+..+.++.++|.+|..+|++++|...+.+...
T Consensus 248 ~~al~~~~~~---------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-- 292 (383)
T 3ulq_A 248 KRAIAVFEES---------------------------------NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA-- 292 (383)
T ss_dssp HHHHHHHHHT---------------------------------TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhh---------------------------------ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 9988642110 00022345677888888999999999888765311
Q ss_pred hHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcC---HHHHHHHHHHhhhhcCCC
Q psy12000 238 PQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRS---FKDVILYLSSIKSYYTSD 314 (507)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~Ai~~~~~~~~~~~~~ 314 (507)
....... +........+|.++...|+ +++|+.++++... .|..
T Consensus 293 -----------------------------~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~-~~~~ 338 (383)
T 3ulq_A 293 -----------------------------YSQKAGD----VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML-YADL 338 (383)
T ss_dssp -----------------------------HHHHHTC----HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC-HHHH
T ss_pred -----------------------------HHHHcCC----HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC-HHHH
Confidence 0000000 0000112247888888888 8888888887632 2333
Q ss_pred chHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000 315 DSFNFNFAQAKCALGQYKEAEEMFLLVQN 343 (507)
Q Consensus 315 ~~~~~~lg~~~~~~g~~~~A~~~~~~~~~ 343 (507)
..++..+|.+|..+|++++|+.+|++++.
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677899999999999999999998863
No 66
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.79 E-value=1.9e-18 Score=160.93 Aligned_cols=155 Identities=13% Similarity=0.136 Sum_probs=129.0
Q ss_pred CccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHH
Q psy12000 4 ADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPP---EDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLS 80 (507)
Q Consensus 4 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~ 80 (507)
.+....+.+|.+++..|+|++|+..|+++++.+|++ +++++.+|.+++.+|++++|+..++++....+...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~------ 86 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP------ 86 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc------
Confidence 345677889999999999999999999999999999 88999999999999999999999988754222110
Q ss_pred HhcCChhHHHHHHHHHhhcHHHHHHHHHHHHH--------hhcHHHHHHHHHHHHHhCCchhHHH---------------
Q psy12000 81 HKLGDEKSLMEYHQKLEDSLEEQLCLASIHFL--------RCHYQEAIDIYKRILLDHKDLLALN--------------- 137 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~~l~~~p~~~~~~--------------- 137 (507)
..+..++.+|.++.. .|++++|+..|++++..+|+++.+.
T Consensus 87 -----------------~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~ 149 (261)
T 3qky_A 87 -----------------RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLAR 149 (261)
T ss_dssp -----------------THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred -----------------hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHH
Confidence 012236789999999 9999999999999999999876655
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH---HHHHHHhhhhhhc
Q psy12000 138 --VYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR---IALNLKACNTYKL 181 (507)
Q Consensus 138 --~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~a~~~~a~~~~~~ 181 (507)
+.+|.+|..+|++++|+..|++++..+|+++ .++..++.++..+
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999854 3555555555443
No 67
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.79 E-value=2.3e-19 Score=152.05 Aligned_cols=147 Identities=16% Similarity=0.030 Sum_probs=126.8
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHH
Q psy12000 11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLM 90 (507)
Q Consensus 11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (507)
.||.++...|++++|+..+++++..+|.++..++.+|.+|+..|++++|+..++++....+.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~------------------ 63 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER------------------ 63 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------
Confidence 47899999999999999999999999999999999999999999999999999987543222
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCcHH
Q psy12000 91 EYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQ-VAMYLAQKPTSRI 169 (507)
Q Consensus 91 ~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~~l~~~p~~~~ 169 (507)
++..+..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|.+. ++++++.+|+++.
T Consensus 64 --------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~ 135 (150)
T 4ga2_A 64 --------DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPA 135 (150)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH
T ss_pred --------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH
Confidence 1334788999999999999999999999999999999999999999999999887765 5999999999999
Q ss_pred HHHHHhhhhhhccC
Q psy12000 170 ALNLKACNTYKLFT 183 (507)
Q Consensus 170 a~~~~a~~~~~~~~ 183 (507)
++.+++.++...|+
T Consensus 136 ~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 136 VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCc
Confidence 99888887666553
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.78 E-value=2e-18 Score=182.15 Aligned_cols=164 Identities=12% Similarity=-0.026 Sum_probs=150.6
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE 86 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (507)
+++..+|.++..+|++++|++.|+++++.+|+++.+++++|.++..+|++++|+..|+++....+.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-------------- 75 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-------------- 75 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------
Confidence 456779999999999999999999999999999999999999999999999999999987532221
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000 87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 166 (507)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 166 (507)
.++.+.++|.++..+|++++|++.|+++++.+|++..+++++|.++..+|++++|++.|+++++.+|+
T Consensus 76 ------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~ 143 (723)
T 4gyw_A 76 ------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143 (723)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred ------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 12347889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhhhhhhccChHHHHHhhHHHHH
Q psy12000 167 SRIALNLKACNTYKLFTSRAAENQLKPILV 196 (507)
Q Consensus 167 ~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~ 196 (507)
+..++..++.++...|++++|...++++++
T Consensus 144 ~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 144 FPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred ChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999999998888653
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.77 E-value=3.6e-18 Score=180.21 Aligned_cols=173 Identities=10% Similarity=-0.038 Sum_probs=149.7
Q ss_pred ccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhc
Q psy12000 278 CDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLT 357 (507)
Q Consensus 278 ~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 357 (507)
|+...++..||.++..+|++++|+.+|+++++.+|++..+++++|.+|..+|++++|++.|++++..+|.....+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~----- 80 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY----- 80 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-----
Confidence 444556778999999999999999999999999999999999999999999999999999999987665432222
Q ss_pred ccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhc
Q psy12000 358 KCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCY 437 (507)
Q Consensus 358 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y 437 (507)
..+|.++...|++++|+..|+++++.+|++..++.++|.+|
T Consensus 81 ---------------------------------------~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~ 121 (723)
T 4gyw_A 81 ---------------------------------------SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH 121 (723)
T ss_dssp ---------------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ---------------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 23455677778999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000 438 YKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR 494 (507)
Q Consensus 438 ~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
.++|++++|++.|+++++++|+++.++..++.++..+++...|++.++++++..|.+
T Consensus 122 ~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 122 KDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 999999999999999999999999999999999999898888888888888877654
No 70
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=1.9e-15 Score=162.87 Aligned_cols=303 Identities=12% Similarity=0.043 Sum_probs=202.8
Q ss_pred CCccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc----chHHH
Q psy12000 3 NADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT----RLSFH 78 (507)
Q Consensus 3 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~----~~~~~ 78 (507)
.+++.+.+.+|.++...|++++|+..|.++ ++++.|..+|.++.+.|++++|++++..+.+..... ...+.
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 1176 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHH
Confidence 355677788999999999999999999775 677889999999999999999999998775432111 11122
Q ss_pred HHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12000 79 LSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVA 158 (507)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 158 (507)
++ +.+..+++..+.. .....++..+|..++..|+|++|+.+|.++ ..|..+|.++.++|++++|++.++
T Consensus 1177 YA-Kl~rleele~fI~--~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1177 LA-KTNRLAELEEFIN--GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred HH-hhcCHHHHHHHHh--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 22 2234444443321 123456788999999999999999999996 467889999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCCh
Q psy12000 159 MYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVP 238 (507)
Q Consensus 159 ~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~ 238 (507)
++ .++.++.-.+......|.+..|...... ....++....++..|.+.|.|++|+.+++.....++
T Consensus 1246 KA-----~n~~aWkev~~acve~~Ef~LA~~cgl~---------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler 1311 (1630)
T 1xi4_A 1246 KA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH---------IVVHADELEELINYYQDRGYFEELITMLEAALGLER 1311 (1630)
T ss_pred Hh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh---------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh
Confidence 88 3345555455555566777777653322 233566777899999999999999999987644333
Q ss_pred ---HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcc---cccchhhhhHHHHHHHhhcCHHHHHHH---------
Q psy12000 239 ---QEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQS---ECDTVPGRQCMASSFFLLRSFKDVILY--------- 303 (507)
Q Consensus 239 ---~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~Ai~~--------- 303 (507)
..+...+.++... ..+.+.++.++|....+.+. .+.....|..+..+|.+-|+|+.|+..
T Consensus 1312 aH~gmftELaiLyaKy-----~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~ 1386 (1630)
T 1xi4_A 1312 AHMGMFTELAILYSKF-----KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAW 1386 (1630)
T ss_pred hHhHHHHHHHHHHHhC-----CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhh
Confidence 3333344444432 34556666666654333221 112222344578889999999999932
Q ss_pred ----HHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000 304 ----LSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQN 343 (507)
Q Consensus 304 ----~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~ 343 (507)
|+.+.. .+.++..++....-|. +..+.++..+..++.
T Consensus 1387 ~~~~Fk~~i~-kv~n~elyykai~Fyl--~~~P~~lndLl~~l~ 1427 (1630)
T 1xi4_A 1387 KEGQFKDIIT-KVANVELYYRAIQFYL--EFKPLLLNDLLMVLS 1427 (1630)
T ss_pred hhHHHHHHhc-ccccHHHHHHHHHHHH--hhChHHHHHHHHHhh
Confidence 222221 2345566665555555 555566666665553
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=162.12 Aligned_cols=265 Identities=14% Similarity=0.097 Sum_probs=176.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHh--------CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLD--------HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLK 174 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~ 174 (507)
+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+..+++++......
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------- 102 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT------- 102 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-------
Confidence 788999999999999999999999984 67788899999999999999999999999887542100
Q ss_pred hhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhc
Q psy12000 175 ACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQD 254 (507)
Q Consensus 175 a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~ 254 (507)
.....+....++.++|.+|...|++++|+..+.+..
T Consensus 103 ------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-------------------- 138 (311)
T 3nf1_A 103 ------------------------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-------------------- 138 (311)
T ss_dssp ------------------------HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--------------------
T ss_pred ------------------------hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH--------------------
Confidence 001112234567889999999999999998886531
Q ss_pred cCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhh--------cCCCchHHHHHHHHHH
Q psy12000 255 TGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSY--------YTSDDSFNFNFAQAKC 326 (507)
Q Consensus 255 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~--------~~~~~~~~~~lg~~~~ 326 (507)
..+..... ...+....++..+|.++...|++++|+.+++++... .|....++..+|.+|.
T Consensus 139 -----------~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 206 (311)
T 3nf1_A 139 -----------EIREKVLG-KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL 206 (311)
T ss_dssp -----------HHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHhcC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 11100000 001112233456899999999999999999988765 3334566788999999
Q ss_pred hhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhH
Q psy12000 327 ALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLR 406 (507)
Q Consensus 327 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 406 (507)
.+|++++|+.+|++++...+.... +...... ...+ ...... ...+......
T Consensus 207 ~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~---~~~~----------~~~~~~----------~~~~~~~~~~ 257 (311)
T 3nf1_A 207 KQGKFKQAETLYKEILTRAHEREF------GSVDDEN---KPIW----------MHAEER----------EECKGKQKDG 257 (311)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHH------C---------CCHH----------HHHHHH----------HHC-------
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcC------CCCCcch---HHHH----------HHHHHH----------HHhcCchhhH
Confidence 999999999999998743211000 0000000 0000 000000 0011122233
Q ss_pred hhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCC
Q psy12000 407 CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 459 (507)
Q Consensus 407 ~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~ 459 (507)
+.+.+|+..++++....|....++..+|.+|.++|++++|+..+++++++.|+
T Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 258 TSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 57788889999999999999999999999999999999999999999998876
No 72
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=3.9e-18 Score=165.72 Aligned_cols=382 Identities=11% Similarity=0.012 Sum_probs=167.4
Q ss_pred HHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHH
Q psy12000 14 YCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYH 93 (507)
Q Consensus 14 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (507)
......|+.++|.++++++ +++++|..+|.++...|++++|++.|.++.+..
T Consensus 11 ~ll~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~----------------------- 62 (449)
T 1b89_A 11 VLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPS----------------------- 62 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHH-----------------------
Confidence 3445678999999999988 334699999999999999999999998764311
Q ss_pred HHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q psy12000 94 QKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNL 173 (507)
Q Consensus 94 ~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~ 173 (507)
.+...+..+...|++++|+.+++.+.+..|+ +.+...++.+|.++|+++++.++++ .|+. .+++.
T Consensus 63 --------~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~-~a~~~ 127 (449)
T 1b89_A 63 --------SYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPNN-AHIQQ 127 (449)
T ss_dssp -------------------------------------------------------CHHHHTTTTT-----CC--------
T ss_pred --------HHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCcH-HHHHH
Confidence 1344556667789999999988888876554 6778889999999999999888774 3544 47778
Q ss_pred HhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q psy12000 174 KACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQ 253 (507)
Q Consensus 174 ~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~ 253 (507)
+|..++..|++++|...|.++ ..+..+|.++.+.|+|++|++.+.+. .++..|.....+....|
T Consensus 128 IGd~~~~~g~yeeA~~~Y~~a-------------~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~- 191 (449)
T 1b89_A 128 VGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGK- 191 (449)
T ss_dssp ---------CTTTHHHHHHHT-------------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHh-------------hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcC-
Confidence 888888999999999888754 35788999999999999999999887 35655554444555544
Q ss_pred ccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHh--hCCH
Q psy12000 254 DTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCA--LGQY 331 (507)
Q Consensus 254 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~ 331 (507)
.++.|+.....+. ..++.. ..+..+|.+.|++++|+.++++++..++.+...+..+|.+|.+ -++.
T Consensus 192 ------ef~lA~~~~l~L~---~~ad~l---~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~ 259 (449)
T 1b89_A 192 ------EFRLAQMCGLHIV---VHADEL---EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKM 259 (449)
T ss_dssp ------CHHHHHHTTTTTT---TCHHHH---HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred ------cHHHHHHHHHHHH---hCHhhH---HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 3455544332222 122222 1367889999999999999999999988888888888888877 5788
Q ss_pred HHHHHHHHhhcccCC-----CchhhhhhhhcccCccchhhhHHHHHHHHcCCcH----HHHHHHHHhhhcHHHHHHHHHH
Q psy12000 332 KEAEEMFLLVQNEGL-----KNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEK----SLMEYHQKLEDSLEEQLCLASI 402 (507)
Q Consensus 332 ~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~l~~~ 402 (507)
.++++.|...++.++ .+.+.|.. +..+|...++++.|......-.+.. .-.+.+.+++. ..+.+..+
T Consensus 260 ~ehl~~~~~~ini~k~~~~~~~~~~w~e-~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n---~elyYkai 335 (449)
T 1b89_A 260 REHLELFWSRVNIPKVLRAAEQAHLWAE-LVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVAN---VELYYRAI 335 (449)
T ss_dssp HHHHHHHSTTSCHHHHHHHHHTTTCHHH-HHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSS---THHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhH---HHHHHHHH
Confidence 888888876655443 22333322 2334555667777665544433221 11122222211 12334455
Q ss_pred HHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCC
Q psy12000 403 HFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT 476 (507)
Q Consensus 403 ~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~ 476 (507)
.+..+....++..+-.++...=|... ....+.+.|+..-...+++.+... ++..+...+-.++.+..+
T Consensus 336 ~fyl~~~p~~l~~ll~~l~~~ld~~r----~v~~~~~~~~l~l~~~yl~~v~~~--n~~~vnealn~l~ieeed 403 (449)
T 1b89_A 336 QFYLEFKPLLLNDLLMVLSPRLDHTR----AVNYFSKVKQLPLVKPYLRSVQNH--NNKSVNESLNNLFITEED 403 (449)
T ss_dssp HHHHHHCGGGHHHHHHHHGGGCCHHH----HHHHHHHTTCTTTTHHHHHHHHTT--CCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCHHHHHHHHHHHHhccCcHH----HHHHHHHcCCcHHHHHHHHHHHHh--hHHHHHHHHHHHHHhhhh
Confidence 55556677777777777733222222 223356788888888888766543 344444445555555444
No 73
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.76 E-value=1.4e-18 Score=147.15 Aligned_cols=145 Identities=16% Similarity=-0.000 Sum_probs=124.3
Q ss_pred HHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhh
Q psy12000 287 MASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKT 366 (507)
Q Consensus 287 la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 366 (507)
||.++..+|++++|+..++++...+|+.+..++++|.+|+..|++++|+++|++++..+|.+...+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~-------------- 68 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAH-------------- 68 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--------------
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--------------
Confidence 788999999999999999999988888888889999999999999999999999987665443222
Q ss_pred hHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhH
Q psy12000 367 RLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVS 446 (507)
Q Consensus 367 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A 446 (507)
..+|.++...|++++|+..|+++++.+|+++.++..+|.+|.++|++++|
T Consensus 69 ------------------------------~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 69 ------------------------------RFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp ------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSH
T ss_pred ------------------------------HHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Confidence 33456777889999999999999999999999999999999999999988
Q ss_pred HHH-HHHHHhcCCCchhhhhHHHhhhhhcC
Q psy12000 447 QEQ-VAMYLAQKPTSRIALNLKACNTYKLF 475 (507)
Q Consensus 447 ~~~-~~~~l~~~P~~~~a~~~~~~~~~~~~ 475 (507)
... ++++++++|+++.++++++.++...+
T Consensus 119 a~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 119 AKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 776 59999999999999999999876543
No 74
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.76 E-value=2.1e-17 Score=175.00 Aligned_cols=193 Identities=17% Similarity=0.068 Sum_probs=168.8
Q ss_pred HhhcCHHHHHHHHHHHh--------cCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000 17 FHLGQYKQALGIYETLR--------HLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS 88 (507)
Q Consensus 17 ~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (507)
...|++++|++.|++++ +.+|++.++++.+|.++..+|++++|+..++++....+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---------------- 465 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW---------------- 465 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC----------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc----------------
Confidence 78999999999999999 899999999999999999999999999999887532222
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
++..++.+|.++...|++++|+..|+++++.+|++..+++++|.++..+|++++ ++.|+++++.+|++.
T Consensus 466 ----------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~ 534 (681)
T 2pzi_A 466 ----------RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVI 534 (681)
T ss_dssp ----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCH
T ss_pred ----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchH
Confidence 123377899999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhh--------ccHHHHHHHHHhcCCCChHH
Q psy12000 169 IALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQ--------EEHQEAFDLIKNLEPSVPQE 240 (507)
Q Consensus 169 ~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~l~~~~~~~~~~ 240 (507)
.+++.+|.++...|++++|+..++++ ....|..+.++.++|.+++.. +++++|...+..+.+..+..
T Consensus 535 ~a~~~lg~~~~~~g~~~~A~~~~~~a-----l~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 535 SAAFGLARARSAEGDRVGAVRTLDEV-----PPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS-----CTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhh-----cccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 99999999999999999999998765 356778889999999998773 55888888888877666654
Q ss_pred H
Q psy12000 241 Y 241 (507)
Q Consensus 241 ~ 241 (507)
.
T Consensus 610 ~ 610 (681)
T 2pzi_A 610 L 610 (681)
T ss_dssp H
T ss_pred H
Confidence 3
No 75
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.75 E-value=3.5e-17 Score=152.28 Aligned_cols=175 Identities=13% Similarity=0.066 Sum_probs=144.7
Q ss_pred chhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCC---chHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhh
Q psy12000 280 TVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSD---DSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHL 356 (507)
Q Consensus 280 ~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 356 (507)
.....+.+|..++..|+|++|+..|+++....|++ +.+++.+|.+|..+|++++|+..|++++...|.+.....
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~--- 90 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ--- 90 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH---
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH---
Confidence 34456678999999999999999999999999988 678899999999999999999999999865543211100
Q ss_pred cccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHh--------HhhHHHHHHHHHHHhhcCCchhh
Q psy12000 357 TKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFL--------RCHYQEAIDIYKRILLDHKDLLA 428 (507)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~--------~~~~~~Ai~~~~~~l~~~p~~~~ 428 (507)
....+|.+++. .|++++|+..|++++..+|+++.
T Consensus 91 --------------------------------------a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 132 (261)
T 3qky_A 91 --------------------------------------AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL 132 (261)
T ss_dssp --------------------------------------HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT
T ss_pred --------------------------------------HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh
Confidence 01223445555 78999999999999999998876
Q ss_pred hH-----------------HHHHhhccccccchhHHHHHHHHHhcCCCc---hhhhhHHHhhhhhc----------CChH
Q psy12000 429 LN-----------------VYGAMCYYKLDYYDVSQEQVAMYLAQKPTS---RIALNLKACNTYKL----------FTSR 478 (507)
Q Consensus 429 ~~-----------------~~la~~y~~~g~~~~A~~~~~~~l~~~P~~---~~a~~~~~~~~~~~----------~~~~ 478 (507)
+. +.+|.+|.++|++++|+..|+++++.+|++ +.++..+|.+++.+ ++.+
T Consensus 133 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~ 212 (261)
T 3qky_A 133 VDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYR 212 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHH
Confidence 55 788999999999999999999999999994 56888899999877 6678
Q ss_pred HHHHHHHHHHHhCCCCc
Q psy12000 479 AAENQLKPILVSAGPRV 495 (507)
Q Consensus 479 ~~~~~~~~~~~~~~~~~ 495 (507)
.|...|+++++.+|.+.
T Consensus 213 ~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 213 RAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHCCCCh
Confidence 88889999999999874
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.74 E-value=8.7e-16 Score=150.65 Aligned_cols=279 Identities=12% Similarity=-0.009 Sum_probs=187.3
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChh-----hHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHh
Q psy12000 8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPED-----TEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHK 82 (507)
Q Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~ 82 (507)
+....|.++...|++++|+..+++++...|.... ++..+|.++...|++++|+..++++....+ .
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----------~ 85 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR----------Q 85 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----------H
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH----------h
Confidence 3456799999999999999999999998876542 567899999999999999999887642111 0
Q ss_pred cCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--------CchhHHHHHHHHHHHhcCCHHHHH
Q psy12000 83 LGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH--------KDLLALNVYGAMCYYKLDYYDVSQ 154 (507)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~ 154 (507)
.+.... ....+..+|.++..+|++++|+..|++++... |....++.++|.++...|++++|+
T Consensus 86 ~~~~~~----------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (373)
T 1hz4_A 86 HDVWHY----------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 155 (373)
T ss_dssp TTCHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCcHHH----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 101000 01115679999999999999999999999875 345567888999999999999999
Q ss_pred HHHHHHHhcCCCc-----HHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCC-CChhHhH--HHHHHHHHhhccHHHH
Q psy12000 155 EQVAMYLAQKPTS-----RIALNLKACNTYKLFTSRAAENQLKPILVSILPPLI-DVIPESR--LNLVIYHLKQEEHQEA 226 (507)
Q Consensus 155 ~~~~~~l~~~p~~-----~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~-~~~~~~~--~~l~~~~~~~~~~~~A 226 (507)
..+++++...|.. ..++..++.++...|++++|...++.... ...... +...... ..++.++...|++++|
T Consensus 156 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 234 (373)
T 1hz4_A 156 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN-LLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 234 (373)
T ss_dssp HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhccCcchhHHHHHHHHHHHHHHHCCCHHHH
Confidence 9999999877653 22344455555666666666665555432 101100 0000001 1222335555666666
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHH
Q psy12000 227 FDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSS 306 (507)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~ 306 (507)
...+.+.....+.. .......+..+|.++...|++++|+..++.
T Consensus 235 ~~~~~~a~~~~~~~------------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 278 (373)
T 1hz4_A 235 ANWLRHTAKPEFAN------------------------------------NHFLQGQWRNIARAQILLGEFEPAEIVLEE 278 (373)
T ss_dssp HHHHHHSCCCCCTT------------------------------------CGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCc------------------------------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555432211100 000001223578899999999999999988
Q ss_pred hhhhcCC------CchHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000 307 IKSYYTS------DDSFNFNFAQAKCALGQYKEAEEMFLLVQN 343 (507)
Q Consensus 307 ~~~~~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~ 343 (507)
+....+. ...+...+|.++...|++++|...|++++.
T Consensus 279 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 279 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7654322 123667789999999999999999998864
No 77
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.74 E-value=2e-16 Score=143.77 Aligned_cols=200 Identities=11% Similarity=0.063 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHH
Q psy12000 101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL---LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI---ALNLK 174 (507)
Q Consensus 101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---a~~~~ 174 (507)
+.++.+|..++..|+|++|+..|++++...|++ ..+++.+|.+++.+|++++|+..|+++++.+|+++. ++..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 447889999999999999999999999999876 478999999999999999999999999999999875 66777
Q ss_pred hhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcC---CCChHHHHHHHHHHHHh
Q psy12000 175 ACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLE---PSVPQEYILKAVVQVTI 251 (507)
Q Consensus 175 a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~---~~~~~~~~~~~~~~~~~ 251 (507)
|.+++..+.. ....+..++..+..+|++++|+..++++. |.++...... ..+
T Consensus 85 g~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~----~~l 139 (225)
T 2yhc_A 85 GLTNMALDDS---------------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDAT----KRL 139 (225)
T ss_dssp HHHHHHHHC-----------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH----HHH
T ss_pred HHHHHhhhhh---------------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHH----HHH
Confidence 7776554321 01223456667778999999999998764 4443322111 111
Q ss_pred hhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc---hHHHHHHHHHHhh
Q psy12000 252 GQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD---SFNFNFAQAKCAL 328 (507)
Q Consensus 252 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~---~~~~~lg~~~~~~ 328 (507)
+... ..+. .....+|.+|+..|++++|+..|+++.+..|+++ .+++.+|.+|.++
T Consensus 140 ~~~~---~~~~-------------------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 197 (225)
T 2yhc_A 140 VFLK---DRLA-------------------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM 197 (225)
T ss_dssp HHHH---HHHH-------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHH---HHHH-------------------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc
Confidence 1000 0000 1123579999999999999999999999999875 5688899999999
Q ss_pred CCHHHHHHHHHhhcccCCC
Q psy12000 329 GQYKEAEEMFLLVQNEGLK 347 (507)
Q Consensus 329 g~~~~A~~~~~~~~~~~~~ 347 (507)
|++++|++.++++....|.
T Consensus 198 g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 198 QMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp TCHHHHHHHHHHHHHCCSC
T ss_pred CCcHHHHHHHHHHHhhCCC
Confidence 9999999999988755443
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.74 E-value=1.3e-16 Score=157.04 Aligned_cols=244 Identities=11% Similarity=0.007 Sum_probs=161.8
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHhcCCC------CChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHh
Q psy12000 9 DAWLGYCHFHLGQYKQALGIYETLRHLPN------PPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHK 82 (507)
Q Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~ 82 (507)
.++.|..++..|+|++|+..|+++++..+ ..+.+++.+|.++...|++++|+..++++......
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~---------- 173 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN---------- 173 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh----------
Confidence 45689999999999999999999998743 23468899999999999999999999886421110
Q ss_pred cCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC------chhHHHHHHHHHHHhcCCHHHHHHH
Q psy12000 83 LGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK------DLLALNVYGAMCYYKLDYYDVSQEQ 156 (507)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~ 156 (507)
...... .....+..+|.++...|++++|+++|++++...+ ....++.++|.+|..+|++++|++.
T Consensus 174 ~~~~~~---------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 174 HPLYSI---------RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp STTCHH---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCchh---------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 000000 0012267899999999999999999999998743 2346889999999999999999999
Q ss_pred HHHHHh-----cCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCC-CCChhHhHHHHHHHHHhhccHHHHHHHH
Q psy12000 157 VAMYLA-----QKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPL-IDVIPESRLNLVIYHLKQEEHQEAFDLI 230 (507)
Q Consensus 157 ~~~~l~-----~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~l 230 (507)
+++++. .+|....++..+|.+++..|++++|...+++... ..... .+........++.+|...++
T Consensus 245 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~l~~ly~~~~~-------- 315 (378)
T 3q15_A 245 FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD-HITARSHKFYKELFLFLQAVYKETVD-------- 315 (378)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCTTCCSCHHHHHHHHHHHHSSSCC--------
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHhCCCc--------
Confidence 999987 5665555555555555555555555555554432 11111 11111112223333333333
Q ss_pred HhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhh
Q psy12000 231 KNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSY 310 (507)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~ 310 (507)
...+.+|+.+++..... ++.......+|.+|...|++++|+.+|+++...
T Consensus 316 ---------------------------~~~~~~al~~~~~~~~~---~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 316 ---------------------------ERKIHDLLSYFEKKNLH---AYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp ---------------------------HHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 13345555555442211 111122346899999999999999999887654
No 79
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=2.5e-16 Score=150.36 Aligned_cols=195 Identities=16% Similarity=0.085 Sum_probs=130.9
Q ss_pred cchhhHHHHHHHhhcC------H----HHHHHHHHHHhcCCCCChhhHHHHHHHHHhh-------ccH-------HHHHH
Q psy12000 6 SLTDAWLGYCHFHLGQ------Y----KQALGIYETLRHLPNPPEDTEFNIASCYFYL-------GMY-------LQANQ 61 (507)
Q Consensus 6 ~~~~~~lg~~~~~~g~------~----~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-------g~~-------~eA~~ 61 (507)
.+..+|..++-+...+ . ++|+..|+++++.+|.++++|+.+|..+... |++ ++|+.
T Consensus 6 ~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 6 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 3456777777776553 3 7899999999999999999999999998753 664 77777
Q ss_pred HHHhCCC-CccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhH-HHHH
Q psy12000 62 ILEKVPP-SRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLA-LNVY 139 (507)
Q Consensus 62 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~ 139 (507)
.++++.. ..+.. +..+..+|.++...|++++|+.+|++++...|+++. ++..
T Consensus 86 ~~~rAl~~~~p~~--------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 139 (308)
T 2ond_A 86 IYERAISTLLKKN--------------------------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQ 139 (308)
T ss_dssp HHHHHHTTTTTTC--------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHH
T ss_pred HHHHHHHHhCccc--------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHH
Confidence 7777655 23322 122556777778888888888888888888887776 7888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh-ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHH
Q psy12000 140 GAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK-LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHL 218 (507)
Q Consensus 140 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~-~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (507)
+|.++.+.|++++|+..|+++++.+|.....+...+.+.+. .|+.+.|...|+++++ ..|..+.++.+++.++.
T Consensus 140 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~ 214 (308)
T 2ond_A 140 YMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK-----KYGDIPEYVLAYIDYLS 214 (308)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH-----HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHH
Confidence 88888888888888888888888877765544433333221 4555555555555432 11223444444555554
Q ss_pred hhccHHHHHHHHH
Q psy12000 219 KQEEHQEAFDLIK 231 (507)
Q Consensus 219 ~~~~~~~A~~~l~ 231 (507)
..|++++|...++
T Consensus 215 ~~g~~~~A~~~~~ 227 (308)
T 2ond_A 215 HLNEDNNTRVLFE 227 (308)
T ss_dssp TTCCHHHHHHHHH
T ss_pred HCCCHHHHHHHHH
Confidence 4555555444443
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.73 E-value=7.4e-16 Score=151.13 Aligned_cols=309 Identities=8% Similarity=-0.068 Sum_probs=210.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH------HH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL-----ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI------AL 171 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------a~ 171 (507)
...+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++...|.... +.
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 56788999999999999999999999887543 36778999999999999999999999876543321 24
Q ss_pred HHHhhhhhhccChHHHHHhhHHHHHhh--C-CCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy12000 172 NLKACNTYKLFTSRAAENQLKPILVSI--L-PPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQ 248 (507)
Q Consensus 172 ~~~a~~~~~~~~~~~A~~~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~ 248 (507)
..++.++...|++++|...++..+... . ....+....++.++|.++...|++++|...+.+.
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a--------------- 161 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG--------------- 161 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------
Confidence 556777777788888777777654311 0 0001223445666777777777777777666542
Q ss_pred HHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCC--Cc-hHHH----HH
Q psy12000 249 VTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTS--DD-SFNF----NF 321 (507)
Q Consensus 249 ~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~--~~-~~~~----~l 321 (507)
+...... . .+....++..+|.++...|++++|+.+++++....+. .+ .+.. .+
T Consensus 162 ----------------l~~~~~~---~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 221 (373)
T 1hz4_A 162 ----------------IEVLSSY---Q-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 221 (373)
T ss_dssp ----------------HHHTTTS---C-GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred ----------------HHHhhcc---C-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHH
Confidence 1111000 0 0111233446899999999999999999988765332 21 1211 24
Q ss_pred HHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHH
Q psy12000 322 AQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLAS 401 (507)
Q Consensus 322 g~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 401 (507)
+.++...|++++|...+.+++...+...... . . ....++.
T Consensus 222 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--------------~-------------~-------------~~~~la~ 261 (373)
T 1hz4_A 222 VIYWQMTGDKAAAANWLRHTAKPEFANNHFL--------------Q-------------G-------------QWRNIAR 261 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG--------------H-------------H-------------HHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCCCCcchhh--------------H-------------H-------------HHHHHHH
Confidence 4568899999999999999876543211000 0 0 0022345
Q ss_pred HHHhHhhHHHHHHHHHHHhhcCCc------hhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcC
Q psy12000 402 IHFLRCHYQEAIDIYKRILLDHKD------LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 475 (507)
Q Consensus 402 ~~~~~~~~~~Ai~~~~~~l~~~p~------~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~ 475 (507)
++...|++++|+..+++++...+. ...+...+|.++..+|++++|...+++++...+.. +.+.+-+.
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~-------g~~~~~~~ 334 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT-------GFISHFVI 334 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-------CCCHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc-------cHHHHHHH
Confidence 666679999999999998865432 23467788999999999999999999999876542 23333345
Q ss_pred ChHHHHHHHHHHHHhCCC
Q psy12000 476 TSRAAENQLKPILVSAGP 493 (507)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~ 493 (507)
.|......++.++...|-
T Consensus 335 ~g~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 335 EGEAMAQQLRQLIQLNTL 352 (373)
T ss_dssp THHHHHHHHHHHHHTTCS
T ss_pred ccHHHHHHHHHHHhCCCC
Confidence 677777788888888885
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.72 E-value=1.4e-16 Score=138.98 Aligned_cols=168 Identities=15% Similarity=0.161 Sum_probs=136.7
Q ss_pred CCCCccch--hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHH
Q psy12000 1 MGNADSLT--DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFH 78 (507)
Q Consensus 1 ~~~~~~~~--~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~ 78 (507)
||..+... .+.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++....+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------ 74 (186)
T 3as5_A 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD------ 74 (186)
T ss_dssp ---CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred CCccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------
Confidence 44444333 4457999999999999999999999999999999999999999999999999998876432111
Q ss_pred HHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12000 79 LSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVA 158 (507)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 158 (507)
.+..+..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|++.++
T Consensus 75 --------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 75 --------------------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp --------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 122356789999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHH
Q psy12000 159 MYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPI 194 (507)
Q Consensus 159 ~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~ 194 (507)
+++..+|+++.++..++.++...|++++|...++.+
T Consensus 135 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 135 IALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999988877666666666666666666665554
No 82
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=6.2e-17 Score=153.94 Aligned_cols=167 Identities=20% Similarity=0.055 Sum_probs=126.8
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHHhc--------CCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHH
Q psy12000 8 TDAWLGYCHFHLGQYKQALGIYETLRH--------LPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHL 79 (507)
Q Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~--------~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 79 (507)
+...+|.+++..|++++|+..|+++++ ..|....++..+|.++...|++++|+..++++....
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------- 99 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR--------- 99 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------
Confidence 456689999999999999999999998 466777889999999999999999999998763210
Q ss_pred HHhc--CChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--------CchhHHHHHHHHHHHhcCC
Q psy12000 80 SHKL--GDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH--------KDLLALNVYGAMCYYKLDY 149 (507)
Q Consensus 80 ~~~~--~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~ 149 (507)
... .+. ......+..+|.++...|++++|+.+|++++... |....++..+|.++...|+
T Consensus 100 -~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 168 (311)
T 3nf1_A 100 -EKTLGKDH----------PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK 168 (311)
T ss_dssp -HHHHCTTC----------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred -HHHhCCCC----------hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Confidence 000 000 0011236789999999999999999999999874 6677889999999999999
Q ss_pred HHHHHHHHHHHHhc--------CCCcHHHHHHHhhhhhhccChHHHHHhhHHH
Q psy12000 150 YDVSQEQVAMYLAQ--------KPTSRIALNLKACNTYKLFTSRAAENQLKPI 194 (507)
Q Consensus 150 ~~~A~~~~~~~l~~--------~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~ 194 (507)
+++|++.+++++.. +|....++..++.++...|++++|...++++
T Consensus 169 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 169 YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999876 4443444444555555555555555544443
No 83
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.71 E-value=3.4e-16 Score=142.18 Aligned_cols=188 Identities=10% Similarity=0.016 Sum_probs=143.8
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc---hHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhh--hhhhcc
Q psy12000 284 RQCMASSFFLLRSFKDVILYLSSIKSYYTSDD---SFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVY--ISHLTK 358 (507)
Q Consensus 284 ~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~ 358 (507)
+..+|..++..|+|++|+..|+++....|+++ .+++++|.+|+.+|++++|+..|+++++..|.+.... ..++|.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~ 86 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL 86 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence 45689999999999999999999998888764 5788899999999999999999999986655443211 111232
Q ss_pred cCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhH--------
Q psy12000 359 CSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALN-------- 430 (507)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~-------- 430 (507)
++...+. . ... ....++.+....|++++|+..|+++++..|+++.+.
T Consensus 87 ~~~~~~~-------------~--~~~----------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 87 TNMALDD-------------S--ALQ----------GFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF 141 (225)
T ss_dssp HHHHHHC---------------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred HHHhhhh-------------h--hhh----------hhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH
Confidence 2221110 0 000 001122344446899999999999999999987543
Q ss_pred ---------HHHHhhccccccchhHHHHHHHHHhcCCCch---hhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCcc
Q psy12000 431 ---------VYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR---IALNLKACNTYKLFTSRAAENQLKPILVSAGPRVR 496 (507)
Q Consensus 431 ---------~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (507)
..+|.+|++.|++++|+..|+++++.+|+++ .++..++.+++.+++.+.|+..++.+....|.+++
T Consensus 142 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 5689999999999999999999999999987 67899999999999999999999999998888754
No 84
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.71 E-value=4e-16 Score=139.87 Aligned_cols=170 Identities=16% Similarity=0.072 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000 100 LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVY----------------GAMCYYKLDYYDVSQEQVAMYLAQ 163 (507)
Q Consensus 100 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~~l~~ 163 (507)
++.++..|..+...|++++|+..|++++..+|+++.+++. +|.++..+|++++|+..|+++++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3447789999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHH--HHHHHHHhcCCCChHHH
Q psy12000 164 KPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQ--EAFDLIKNLEPSVPQEY 241 (507)
Q Consensus 164 ~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~l~~~~~~~~~~~ 241 (507)
+|+++.++..+|.+++..|++++|+..++++++ ..|..+.++.++|.+|...|+.+ ++...+.++...+|.
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 156 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ-----LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-- 156 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH--
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch--
Confidence 999998877777777777777777777766542 34445566666666655544322 222222222111111
Q ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc
Q psy12000 242 ILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD 315 (507)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~ 315 (507)
..++..+|.++...|+|++|+.+|+++.+..|+..
T Consensus 157 ---------------------------------------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 157 ---------------------------------------QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred ---------------------------------------hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 11233567788888899999999999888888653
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.71 E-value=2.5e-16 Score=147.29 Aligned_cols=247 Identities=15% Similarity=0.020 Sum_probs=152.9
Q ss_pred HhhcCHHHHHHHHHHHhcC--------CCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000 17 FHLGQYKQALGIYETLRHL--------PNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS 88 (507)
Q Consensus 17 ~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (507)
...|++++|+..|+++++. .|..+.++..+|.++...|++++|+..++++... .........
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~~ 81 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAI----------REKTLGKDH 81 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHHTCTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----------HHHHcCCcc
Confidence 3467777777777777762 3566788999999999999999999999876321 000000000
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------CCchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12000 89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD--------HKDLLALNVYGAMCYYKLDYYDVSQEQVAMY 160 (507)
Q Consensus 89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 160 (507)
......+..+|.++...|++++|+.+|++++.. +|....++.++|.++..+|++++|++.++++
T Consensus 82 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 82 --------PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp --------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 001123678999999999999999999999988 5778899999999999999999999999998
Q ss_pred HhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHH
Q psy12000 161 LAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQE 240 (507)
Q Consensus 161 l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~ 240 (507)
+.... +......+....++.++|.+|..+|++++|+..+.+.....+..
T Consensus 154 l~~~~-------------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 154 LEIYA-------------------------------TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp HHHHH-------------------------------HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-------------------------------HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 76510 00001112223456778888888888888888776531110000
Q ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhh------cCHHHHHHHHHHhhhhcCCC
Q psy12000 241 YILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLL------RSFKDVILYLSSIKSYYTSD 314 (507)
Q Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~------~~~~~Ai~~~~~~~~~~~~~ 314 (507)
..+. ..+.....+..++..+... ..+.++..+++.+....|..
T Consensus 203 ---------~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 203 ---------EFGS----------------------VNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp ---------HSSS----------------------CCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred ---------cCCC----------------------cchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 0000 0000011111122222222 22444444444444333444
Q ss_pred chHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000 315 DSFNFNFAQAKCALGQYKEAEEMFLLVQN 343 (507)
Q Consensus 315 ~~~~~~lg~~~~~~g~~~~A~~~~~~~~~ 343 (507)
..++..+|.+|..+|++++|+.+|++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56677789999999999999999988764
No 86
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.70 E-value=4.5e-16 Score=139.53 Aligned_cols=185 Identities=12% Similarity=-0.019 Sum_probs=144.8
Q ss_pred cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000 6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD 85 (507)
Q Consensus 6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (507)
.+..+..|..++..|++++|+..|+++++.+|+++++++..+. ..... .
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~------------------~~~~~---~---------- 52 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV------------------DKNSE---I---------- 52 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS------------------CTTSH---H----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh------------------cchhh---h----------
Confidence 4456778999999999999999999999999998887766431 00000 0
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12000 86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP 165 (507)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 165 (507)
.+.....+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|++++..+|
T Consensus 53 -------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P 119 (208)
T 3urz_A 53 -------------SSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA 119 (208)
T ss_dssp -------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred -------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 0111456899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHhhhhhhccCh--HHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHH
Q psy12000 166 TSRIALNLKACNTYKLFTS--RAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQE 240 (507)
Q Consensus 166 ~~~~a~~~~a~~~~~~~~~--~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~ 240 (507)
+++.+++.+|.+++..+.. +.+...+..+. .++....+++++|.++...|+|++|+..+++....+|..
T Consensus 120 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 120 DNLAANIFLGNYYYLTAEQEKKKLETDYKKLS------SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh------CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 9999999999988776543 33444443321 111122467889999999999999999999876666653
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.70 E-value=1.1e-16 Score=149.70 Aligned_cols=254 Identities=15% Similarity=0.070 Sum_probs=159.4
Q ss_pred HhhcHHHHHHHHHHHHHh--------CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccC
Q psy12000 112 LRCHYQEAIDIYKRILLD--------HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT 183 (507)
Q Consensus 112 ~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~ 183 (507)
..|++++|+.+|++++.. .|....++..+|.++...|++++|+..+++++....
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------------ 74 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIRE------------------ 74 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH------------------
Confidence 346667777777777663 367788999999999999999999999999875420
Q ss_pred hHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHH
Q psy12000 184 SRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKA 263 (507)
Q Consensus 184 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 263 (507)
+......+..+.++.++|.+|..+|++++|+..+.+..
T Consensus 75 -------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------------------- 112 (283)
T 3edt_B 75 -------------KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL----------------------------- 112 (283)
T ss_dssp -------------HHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----------------------------
T ss_pred -------------HHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-----------------------------
Confidence 00001112234567888999999999999988876431
Q ss_pred HHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhh--------cCCCchHHHHHHHHHHhhCCHHHHH
Q psy12000 264 AQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSY--------YTSDDSFNFNFAQAKCALGQYKEAE 335 (507)
Q Consensus 264 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~ 335 (507)
..++.... +..+....++..+|.++...|++++|+.+++++... .|....++.++|.++..+|++++|+
T Consensus 113 --~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 189 (283)
T 3edt_B 113 --EIREKVLG-KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAE 189 (283)
T ss_dssp --HHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred --HHHHHHcC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 11111100 001222334557899999999999999999988776 3444567788999999999999999
Q ss_pred HHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHH
Q psy12000 336 EMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDI 415 (507)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~ 415 (507)
.+|++++...+... .+.........-........... .......+.++...
T Consensus 190 ~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~ 240 (283)
T 3edt_B 190 TLYKEILTRAHEKE------FGSVNGDNKPIWMHAEEREESKD-----------------------KRRDSAPYGEYGSW 240 (283)
T ss_dssp HHHHHHHHHHHHHH------SSSCCSSCCCHHHHHHHHHHTTC-----------------------CCCC----------
T ss_pred HHHHHHHHHHHHhc------CCCcchhHHHHHHHHHHHHhcCC-----------------------chhHHHHHHHHHHH
Confidence 99999874321100 00000000000000000000000 00001346777777
Q ss_pred HHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcC
Q psy12000 416 YKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 457 (507)
Q Consensus 416 ~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~ 457 (507)
++.+....|+.+.++..+|.+|.++|++++|+..+++++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 241 YKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 777777888888999999999999999999999999998764
No 88
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.69 E-value=7.4e-16 Score=134.36 Aligned_cols=167 Identities=11% Similarity=0.041 Sum_probs=144.5
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccc
Q psy12000 284 RQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSR 363 (507)
Q Consensus 284 ~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 363 (507)
+..+|.++...|++++|+.+++++....|++..+++.+|.++...|++++|+..|++++...+.+...+
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----------- 79 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA----------- 79 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH-----------
Confidence 345789999999999999999999988888888889999999999999999999999875543322111
Q ss_pred hhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccc
Q psy12000 364 AKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYY 443 (507)
Q Consensus 364 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~ 443 (507)
..++.++...|++++|+..|++++...|+++.++..+|.+|.+.|++
T Consensus 80 ---------------------------------~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 126 (186)
T 3as5_A 80 ---------------------------------TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRF 126 (186)
T ss_dssp ---------------------------------HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred ---------------------------------HHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcH
Confidence 22345666778999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000 444 DVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR 494 (507)
Q Consensus 444 ~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
++|+..++++++..|+++.++..++.+++..++.+.|...++..++..|.+
T Consensus 127 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 127 DEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999999999999999999999999999999988876
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.68 E-value=1.5e-15 Score=143.77 Aligned_cols=227 Identities=11% Similarity=-0.067 Sum_probs=157.7
Q ss_pred CHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcH
Q psy12000 21 QYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSL 100 (507)
Q Consensus 21 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (507)
++++|+..|+++ |.++...|++++|+..+.++... ....++... ..
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~~----------~a 77 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADY----------QKKAGNEDE----------AG 77 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHH----------HHHTTCHHH----------HH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHH----------HHHhCCHHH----------HH
Confidence 488888888877 66788899999999998876321 111111110 01
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch------hHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCcHHHHHH
Q psy12000 101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL------LALNVYGAMCYYKL-DYYDVSQEQVAMYLAQKPTSRIALNL 173 (507)
Q Consensus 101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~a~~~ 173 (507)
..+..+|.+|..+|++++|+.+|++++...|.. ..++.++|.+|... |++++|+..|++++...|.....
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~--- 154 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV--- 154 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh---
Confidence 236789999999999999999999999988743 46788999999996 99999999999998876643210
Q ss_pred HhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q psy12000 174 KACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQ 253 (507)
Q Consensus 174 ~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~ 253 (507)
.....++.++|.++..+|+|++|+..+.+.....|....
T Consensus 155 ------------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------- 193 (292)
T 1qqe_A 155 ------------------------------ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL----------- 193 (292)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT-----------
T ss_pred ------------------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc-----------
Confidence 001245778999999999999999888764211111000
Q ss_pred ccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCch-----HHHHHHHHHH--
Q psy12000 254 DTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDS-----FNFNFAQAKC-- 326 (507)
Q Consensus 254 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~-----~~~~lg~~~~-- 326 (507)
........+..+|.++..+|++++|+.+++++....|+... .+..++.++.
T Consensus 194 ----------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~ 251 (292)
T 1qqe_A 194 ----------------------SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG 251 (292)
T ss_dssp ----------------------TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTT
T ss_pred ----------------------ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcC
Confidence 00000012345789999999999999999999998886543 2344566665
Q ss_pred hhCCHHHHHHHHHhhcccCCC
Q psy12000 327 ALGQYKEAEEMFLLVQNEGLK 347 (507)
Q Consensus 327 ~~g~~~~A~~~~~~~~~~~~~ 347 (507)
..+++++|+..|++++..+|.
T Consensus 252 ~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 252 DSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp CTTTHHHHHHHHTTSSCCCHH
T ss_pred CHHHHHHHHHHhccCCccHHH
Confidence 467899999999998776653
No 90
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.68 E-value=7e-16 Score=134.29 Aligned_cols=164 Identities=13% Similarity=0.052 Sum_probs=132.5
Q ss_pred CccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhc
Q psy12000 4 ADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKL 83 (507)
Q Consensus 4 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~ 83 (507)
.+.+..+..|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++....+ ....
T Consensus 4 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~------- 75 (176)
T 2r5s_A 4 SPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSY------- 75 (176)
T ss_dssp --CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHH-------
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHH-------
Confidence 34566788999999999999999999999999999999999999999999999999999999876443 2100
Q ss_pred CChhHHHHHHHHHhhcHHHHHHHHHH-HHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 84 GDEKSLMEYHQKLEDSLEEQLCLASI-HFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
...++.+ +...++..+|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++
T Consensus 76 -------------------~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 76 -------------------KSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp -------------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -------------------HHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 0111222 12234445689999999999999999999999999999999999999999999
Q ss_pred cCCCc--HHHHHHHhhhhhhccChHHHHHhhHHH
Q psy12000 163 QKPTS--RIALNLKACNTYKLFTSRAAENQLKPI 194 (507)
Q Consensus 163 ~~p~~--~~a~~~~a~~~~~~~~~~~A~~~l~~~ 194 (507)
.+|+. +.++..++.++...|+.++|...+.+.
T Consensus 137 ~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 137 VNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 99976 446777777777777777777766654
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.67 E-value=4.8e-15 Score=140.25 Aligned_cols=207 Identities=13% Similarity=-0.063 Sum_probs=155.0
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHhcCCCC------ChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHh
Q psy12000 9 DAWLGYCHFHLGQYKQALGIYETLRHLPNP------PEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHK 82 (507)
Q Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~ 82 (507)
+...|.+|...|+|++|+..|+++++..+. .+.++..+|.++..+|++++|+.+++++.... ..
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~----------~~ 109 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF----------TH 109 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----------HH
Confidence 444688999999999999999999987432 24688999999999999999999998874311 11
Q ss_pred cCChhHHHHHHHHHhhcHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHhCCch------hHHHHHHHHHHHhcCCHHHHHH
Q psy12000 83 LGDEKSLMEYHQKLEDSLEEQLCLASIHFLR-CHYQEAIDIYKRILLDHKDL------LALNVYGAMCYYKLDYYDVSQE 155 (507)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~ 155 (507)
.++.... ...+..+|.+|... |++++|+.+|++++...|+. ..++.++|.++..+|++++|+.
T Consensus 110 ~g~~~~~----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 179 (292)
T 1qqe_A 110 RGQFRRG----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD 179 (292)
T ss_dssp TTCHHHH----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHH----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 1111110 12266899999996 99999999999999998754 4678899999999999999999
Q ss_pred HHHHHHhcCCCcHH-------HHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhH-----hHHHHHHHHH--hhc
Q psy12000 156 QVAMYLAQKPTSRI-------ALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPE-----SRLNLVIYHL--KQE 221 (507)
Q Consensus 156 ~~~~~l~~~p~~~~-------a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~~ 221 (507)
.|++++...|++.. ++..++.++...|++++|+..+++++ ...|..+. ....++..+. ..+
T Consensus 180 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-----~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 180 IYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ-----SEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG-----CC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----hhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999888754 35566778888899999988888653 22222222 2334555554 467
Q ss_pred cHHHHHHHHHhcCCCChHH
Q psy12000 222 EHQEAFDLIKNLEPSVPQE 240 (507)
Q Consensus 222 ~~~~A~~~l~~~~~~~~~~ 240 (507)
++++|+..+.++...+|..
T Consensus 255 ~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp THHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHhccCCccHHHH
Confidence 7889998888776666653
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.65 E-value=1.9e-15 Score=160.08 Aligned_cols=211 Identities=11% Similarity=0.004 Sum_probs=162.5
Q ss_pred cCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHh
Q psy12000 34 HLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLR 113 (507)
Q Consensus 34 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~ 113 (507)
..+|+++.+++..| ...|++++|+..++++....... .... + .+..+.++.+|.++...
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~------~~~~-~-----------p~~~~~~~~~a~~~~~~ 446 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDA------DGVD-F-----------SESVELPLMEVRALLDL 446 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------------C-C-----------TTCSHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccc------cccc-c-----------ccchhHHHHHHHHHHhc
Confidence 56888888888777 78999999999998875110000 0000 0 01123367899999999
Q ss_pred hcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHH
Q psy12000 114 CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKP 193 (507)
Q Consensus 114 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~ 193 (507)
|++++|+..|+++++.+|++..+++++|.++..+|++++|++.|+++++.+|++..++..+|.++...|++++ +..+++
T Consensus 447 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~ 525 (681)
T 2pzi_A 447 GDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQT 525 (681)
T ss_dssp TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHH
T ss_pred CCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999988
Q ss_pred HHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCC---CChHHHHHHHHHHHHhhhccCc-HHHHHHHHHHHH
Q psy12000 194 ILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP---SVPQEYILKAVVQVTIGQDTGS-REMVKAAQALFQ 269 (507)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~---~~~~~~~~~~~~~~~~g~~~~~-~~~~~~A~~~~~ 269 (507)
+++ ..|..+.+++++|.++...|++++|+..+++... .++..+..++.++...+....+ .+.+++|.+.+.
T Consensus 526 al~-----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~ 600 (681)
T 2pzi_A 526 VWS-----TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVE 600 (681)
T ss_dssp HHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHH
T ss_pred HHH-----hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHh
Confidence 753 4567788999999999999999999999998654 4444555555555443332222 455666666554
Q ss_pred Hh
Q psy12000 270 LV 271 (507)
Q Consensus 270 ~~ 271 (507)
.+
T Consensus 601 ~~ 602 (681)
T 2pzi_A 601 AL 602 (681)
T ss_dssp TS
T ss_pred hC
Confidence 43
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.64 E-value=3.5e-15 Score=140.77 Aligned_cols=163 Identities=15% Similarity=0.060 Sum_probs=139.5
Q ss_pred cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000 6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD 85 (507)
Q Consensus 6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (507)
.+..+.+|..+...|++++|+..|+++++.+|+++++++.+|.++...|++++|+..++++....+...
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~----------- 185 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR----------- 185 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH-----------
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH-----------
Confidence 456677899999999999999999999999999999999999999999999999999999875443221
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12000 86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP 165 (507)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 165 (507)
...+..+..+...++.++|+..|++++..+|+++.+++++|.++...|++++|+..|.++++.+|
T Consensus 186 ---------------~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 186 ---------------YQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp ---------------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ---------------HHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 01344566678889999999999999999999999999999999999999999999999999999
Q ss_pred Cc--HHHHHHHhhhhhhccChHHHHHhhHHH
Q psy12000 166 TS--RIALNLKACNTYKLFTSRAAENQLKPI 194 (507)
Q Consensus 166 ~~--~~a~~~~a~~~~~~~~~~~A~~~l~~~ 194 (507)
++ ..+...++.++...|+.++|...+++.
T Consensus 251 ~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 251 TAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 98 666676777777777777776665543
No 94
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.64 E-value=8.5e-16 Score=125.69 Aligned_cols=119 Identities=15% Similarity=0.071 Sum_probs=91.2
Q ss_pred HhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHH
Q psy12000 32 LRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHF 111 (507)
Q Consensus 32 ~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~ 111 (507)
+..++|+.++.+..+|.++++.|+|++|+..|+++....+.. +..+..+|.++.
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------~~~~~~~~~~~~ 58 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN--------------------------AILYSNRAACLT 58 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------------HHHHHHHHHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------------HHHHHHHhhHHH
Confidence 445677777788888888888888888888877764322211 223567788888
Q ss_pred HhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000 112 LRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC 176 (507)
Q Consensus 112 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~ 176 (507)
.+|++++|+..|+++++.+|+++.+++++|.++..+|++++|++.|+++++.+|++..+...++.
T Consensus 59 ~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 59 KLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 88888888888888888899888888899999999999999999999999999988877654443
No 95
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.64 E-value=9.9e-15 Score=141.88 Aligned_cols=307 Identities=10% Similarity=0.045 Sum_probs=135.5
Q ss_pred CccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhc
Q psy12000 4 ADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKL 83 (507)
Q Consensus 4 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~ 83 (507)
+++.+...+|.++...|++++|++.|.++ .++..+..++.++...|++++|+.+++.+.+......+...+...+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence 34456666999999999999999999764 3445888999999999999999999888765321111111222222
Q ss_pred CChhHHHHHHHHHhh-cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 84 GDEKSLMEYHQKLED-SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 84 ~~~~~~~~~~~~l~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
...+.+....+.+.. ....+..+|..++..|+|++|+.+|.++ ..+..+|.|+.++|++++|++.++++
T Consensus 105 ~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-- 174 (449)
T 1b89_A 105 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-- 174 (449)
T ss_dssp ----CHHHHTTTTTCC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH--
T ss_pred HHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc--
Confidence 222333332222222 2235889999999999999999999987 45778999999999999999999998
Q ss_pred cCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChH
Q psy12000 163 QKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQ 239 (507)
Q Consensus 163 ~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~ 239 (507)
.++.++..........|+++.|..... .+. ..|+-...++.+|.+.|++++|+.++++. ++....
T Consensus 175 ---~~~~~Wk~v~~aCv~~~ef~lA~~~~l--------~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~ 242 (449)
T 1b89_A 175 ---NSTRTWKEVCFACVDGKEFRLAQMCGL--------HIV-VHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 242 (449)
T ss_dssp ---TCHHHHHHHHHHHHHTTCHHHHHHTTT--------TTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHH
T ss_pred ---CCchhHHHHHHHHHHcCcHHHHHHHHH--------HHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHH
Confidence 355555554455567889999964332 222 45555667889999999999999999875 344444
Q ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcc---cccchhhhhHHHHHHHhhcCHHHHHHHHHHh-hh------
Q psy12000 240 EYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQS---ECDTVPGRQCMASSFFLLRSFKDVILYLSSI-KS------ 309 (507)
Q Consensus 240 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~-~~------ 309 (507)
.+...+..+... ..+.+.+.++.|....+.+. .+.....|..+..+|...++|+.|+...-.- ..
T Consensus 243 ~ftel~il~~ky-----~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~ 317 (449)
T 1b89_A 243 MFTELAILYSKF-----KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ 317 (449)
T ss_dssp HHHHHHHHHHTT-----CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHH
T ss_pred HHHHHHHHHHhc-----CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHH
Confidence 555555555433 34566667776643222211 0112223445788899999999998732221 11
Q ss_pred -----hcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhccc
Q psy12000 310 -----YYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNE 344 (507)
Q Consensus 310 -----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~ 344 (507)
..+.+...+|....-|. ++.+..+..+..++.+
T Consensus 318 f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~ 355 (449)
T 1b89_A 318 FKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSP 355 (449)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGG
T ss_pred HHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHh
Confidence 12334455554444444 6667777777777644
No 96
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.63 E-value=2.3e-16 Score=133.10 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=111.4
Q ss_pred HHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHH
Q psy12000 16 HFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQK 95 (507)
Q Consensus 16 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (507)
+...+++-.+-..++++++.+|+++++++.+|.+++..|++++|+..|+++....|.+
T Consensus 12 ~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~---------------------- 69 (151)
T 3gyz_A 12 STAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN---------------------- 69 (151)
T ss_dssp HHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------
T ss_pred HHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------
Confidence 3444555566677889999999999999999999999999999999999875433322
Q ss_pred HhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 96 LEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 96 l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
+..++.+|.++...|+|++|+..|++++..+|+++.+++++|.|+..+|++++|+..|++++...|+.+
T Consensus 70 ----~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 70 ----VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred ----HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 233778999999999999999999999999999999999999999999999999999999999999876
No 97
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.62 E-value=1.4e-15 Score=124.35 Aligned_cols=119 Identities=13% Similarity=0.049 Sum_probs=94.7
Q ss_pred hhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHH
Q psy12000 308 KSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQ 387 (507)
Q Consensus 308 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 387 (507)
..++|+....+.++|.+|+++|+|++|++.|++++..+|.+...+
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------------------------------- 50 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILY----------------------------------- 50 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----------------------------------
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-----------------------------------
Confidence 345666667778889999999999999999988876655433222
Q ss_pred HhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHH
Q psy12000 388 KLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLK 467 (507)
Q Consensus 388 ~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~ 467 (507)
..+|.+++..|++++|+..|+++++.+|+++.+++.+|.+|..+|++++|++.|+++++++|+++.+...+
T Consensus 51 ---------~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 51 ---------SNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp ---------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ---------HHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 22345666778899999999999999999999999999999999999999999999999999999987766
Q ss_pred Hhh
Q psy12000 468 ACN 470 (507)
Q Consensus 468 ~~~ 470 (507)
+..
T Consensus 122 ~~~ 124 (126)
T 4gco_A 122 RNC 124 (126)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.61 E-value=6e-14 Score=132.12 Aligned_cols=239 Identities=10% Similarity=-0.091 Sum_probs=182.0
Q ss_pred HHhhc-HHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHH
Q psy12000 111 FLRCH-YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD--YYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAA 187 (507)
Q Consensus 111 ~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A 187 (507)
...|. .++|+.++.++|..+|++..+++..+.+...+| ++++++..++.++..+|++..+++.++.+..+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~------- 115 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQ------- 115 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH-------
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH-------
Confidence 34444 469999999999999999999999999999999 99999999999999999998776644332100
Q ss_pred HHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHH
Q psy12000 188 ENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQAL 267 (507)
Q Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 267 (507)
+.
T Consensus 116 ---------------------------------------------------------------~~--------------- 117 (306)
T 3dra_A 116 ---------------------------------------------------------------IM--------------- 117 (306)
T ss_dssp ---------------------------------------------------------------HH---------------
T ss_pred ---------------------------------------------------------------HH---------------
Confidence 00
Q ss_pred HHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHH--HHHHHHHhhcccC
Q psy12000 268 FQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYK--EAEEMFLLVQNEG 345 (507)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~--~A~~~~~~~~~~~ 345 (507)
......+++++++.+++++.+.+|.+..++.+++.++...|.++ ++++.+.++++.+
T Consensus 118 ---------------------~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 118 ---------------------ELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp ---------------------HHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred ---------------------HhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence 00000145677888888888888888888888999999999888 9999999888777
Q ss_pred CCchhhh--hhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcC
Q psy12000 346 LKNDYVY--ISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH 423 (507)
Q Consensus 346 ~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~ 423 (507)
+.+...+ .+++ ... +... .....++++++++++++..+
T Consensus 177 ~~N~sAW~~R~~l----------------l~~-------------l~~~-----------~~~~~~~eEl~~~~~aI~~~ 216 (306)
T 3dra_A 177 LKNNSAWSHRFFL----------------LFS-------------KKHL-----------ATDNTIDEELNYVKDKIVKC 216 (306)
T ss_dssp TTCHHHHHHHHHH----------------HHS-------------SGGG-----------CCHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHH----------------HHh-------------cccc-----------chhhhHHHHHHHHHHHHHhC
Confidence 6654333 1110 000 0000 00023789999999999999
Q ss_pred CchhhhHHHHHhhccccccchhHH-HHHHHHHhcC---CCchhhhhHHHhhhhhcCChHHHHHHHHHHHH-hCCCCc
Q psy12000 424 KDLLALNVYGAMCYYKLDYYDVSQ-EQVAMYLAQK---PTSRIALNLKACNTYKLFTSRAAENQLKPILV-SAGPRV 495 (507)
Q Consensus 424 p~~~~~~~~la~~y~~~g~~~~A~-~~~~~~l~~~---P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 495 (507)
|++..+..++++++.+.|+..+++ ++.+++++.. |.++.++..++.++-+.++.+.|...++.+.+ .+|-|.
T Consensus 217 p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~ 293 (306)
T 3dra_A 217 PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRS 293 (306)
T ss_dssp SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGH
T ss_pred CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHH
Confidence 999999999999999999876644 5777777776 88999999999999888888888889999997 688774
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.61 E-value=7e-15 Score=127.90 Aligned_cols=161 Identities=12% Similarity=0.034 Sum_probs=133.6
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccc
Q psy12000 284 RQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSR 363 (507)
Q Consensus 284 ~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 363 (507)
...+|..+...|++++|+..++++...+|+++.+++.+|.++..+|++++|+..|++++...| +.... ..+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~-~~~------- 79 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYK-SLI------- 79 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHH-HHH-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHH-HHH-------
Confidence 446899999999999999999999999999999999999999999999999999999986655 32111 000
Q ss_pred hhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHH-hHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhcccccc
Q psy12000 364 AKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHF-LRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY 442 (507)
Q Consensus 364 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~-~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~ 442 (507)
+.+.. ..+...+|+..|++++..+|+++.+++.+|.++...|+
T Consensus 80 ------------------------------------~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~ 123 (176)
T 2r5s_A 80 ------------------------------------AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR 123 (176)
T ss_dssp ------------------------------------HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC
T ss_pred ------------------------------------HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 00101 11233458999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhcCCCc--hhhhhHHHhhhhhcCChHHHHHHHHHHHH
Q psy12000 443 YDVSQEQVAMYLAQKPTS--RIALNLKACNTYKLFTSRAAENQLKPILV 489 (507)
Q Consensus 443 ~~~A~~~~~~~l~~~P~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (507)
+++|+..|+++++.+|+. +.++..++.++..++..+.|...|++.+.
T Consensus 124 ~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 124 DEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999999986 55889999999999988888888887764
No 100
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.58 E-value=1.5e-15 Score=128.14 Aligned_cols=117 Identities=17% Similarity=0.160 Sum_probs=102.4
Q ss_pred HHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHH
Q psy12000 302 LYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKS 381 (507)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 381 (507)
..++++...+|++..+++.+|.++..+|++++|+..|++++..+|.+...+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~----------------------------- 73 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYI----------------------------- 73 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----------------------------
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-----------------------------
Confidence 456677788898888999999999999999999999999987766543322
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCch
Q psy12000 382 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 461 (507)
Q Consensus 382 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~ 461 (507)
..+|.++...|+|++|+..|++++..+|+++.+++++|.||.++|++++|+..|++++++.|+++
T Consensus 74 ---------------~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 74 ---------------MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp ---------------HHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred ---------------HHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 33456777789999999999999999999999999999999999999999999999999999987
Q ss_pred h
Q psy12000 462 I 462 (507)
Q Consensus 462 ~ 462 (507)
.
T Consensus 139 ~ 139 (151)
T 3gyz_A 139 L 139 (151)
T ss_dssp H
T ss_pred H
Confidence 3
No 101
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.57 E-value=4.3e-14 Score=130.05 Aligned_cols=233 Identities=11% Similarity=0.003 Sum_probs=142.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYG-------AMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA 175 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a 175 (507)
.+..|.-+ ..++++.|.+.|.+++..+|+..++|..+ +.+...+++..+++..+++.+.+.|....+...+
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~- 87 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI- 87 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC-
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc-
Confidence 44555555 58999999999999999999999999999 8899999999999999999998888765432210
Q ss_pred hhhhhccChHHHHHhhHHHHHhhCCCC-CCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhc
Q psy12000 176 CNTYKLFTSRAAENQLKPILVSILPPL-IDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQD 254 (507)
Q Consensus 176 ~~~~~~~~~~~A~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~ 254 (507)
.|-|.+ ... .....+.++.++.++...|+|++|.+.+.......|...
T Consensus 88 -----~g~y~~-------------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~------------- 136 (282)
T 4f3v_A 88 -----GGLYGD-------------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL------------- 136 (282)
T ss_dssp -----CTTTCC-------------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-------------
T ss_pred -----CCcccc-------------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-------------
Confidence 000000 000 011223455555555566666666555554433333210
Q ss_pred cCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCC--CchHHHHHHHHHHhhCCHH
Q psy12000 255 TGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTS--DDSFNFNFAQAKCALGQYK 332 (507)
Q Consensus 255 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~ 332 (507)
+.+.+|.++++.++|++|+.+|+.+....++ ...+++++|.++..+|+++
T Consensus 137 ----------------------------~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~ 188 (282)
T 4f3v_A 137 ----------------------------VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFT 188 (282)
T ss_dssp ----------------------------HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ----------------------------HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHH
Confidence 1112344555555555555555544332111 0124455555555555555
Q ss_pred HHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHH
Q psy12000 333 EAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEA 412 (507)
Q Consensus 333 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~A 412 (507)
+|+.+|+++
T Consensus 189 eAl~~l~~a----------------------------------------------------------------------- 197 (282)
T 4f3v_A 189 EAERRLTEA----------------------------------------------------------------------- 197 (282)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 555555554
Q ss_pred HHHHHHHhhcC--Cc-hhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcC
Q psy12000 413 IDIYKRILLDH--KD-LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 475 (507)
Q Consensus 413 i~~~~~~l~~~--p~-~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~ 475 (507)
+... |. .+.+.+++|+|+.++|+.++|...|++++..+|+ +.+...+..-.|.+.
T Consensus 198 -------~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~~~~~ 255 (282)
T 4f3v_A 198 -------NDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPSYRLK 255 (282)
T ss_dssp -------HTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTTCCCC
T ss_pred -------hcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCCCCCC
Confidence 3221 33 4455666788888888888888888888888888 777777777777665
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.57 E-value=4.3e-14 Score=133.28 Aligned_cols=164 Identities=13% Similarity=0.044 Sum_probs=139.9
Q ss_pred hhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCc
Q psy12000 282 PGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSP 361 (507)
Q Consensus 282 ~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 361 (507)
.....+|..+...|++++|+..|+++...+|+++.+++++|.++..+|++++|+..|++++..++......
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~--------- 188 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQG--------- 188 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHH---------
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHH---------
Confidence 44567899999999999999999999999999999999999999999999999999999976654221110
Q ss_pred cchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccc
Q psy12000 362 SRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD 441 (507)
Q Consensus 362 ~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g 441 (507)
...+..+...++.++|+..|++++..+|+++.+++.+|.+|...|
T Consensus 189 -----------------------------------~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g 233 (287)
T 3qou_A 189 -----------------------------------LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVG 233 (287)
T ss_dssp -----------------------------------HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred -----------------------------------HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcc
Confidence 001112334577888999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHhcCCCc--hhhhhHHHhhhhhcCChHHHHHHHHHHHH
Q psy12000 442 YYDVSQEQVAMYLAQKPTS--RIALNLKACNTYKLFTSRAAENQLKPILV 489 (507)
Q Consensus 442 ~~~~A~~~~~~~l~~~P~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (507)
++++|+..|+++++.+|++ +.+...++.++-.++..+.+...|++.+.
T Consensus 234 ~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 234 RNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999 88999999999998888888888887664
No 103
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.55 E-value=6.2e-14 Score=114.96 Aligned_cols=135 Identities=23% Similarity=0.283 Sum_probs=118.9
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE 86 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (507)
.+.+.+|.++...|++++|+..|+++++..|.++.+++.+|.++...|++++|+..++++....+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-------------- 67 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-------------- 67 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC--------------
Confidence 356778999999999999999999999999999999999999999999999999998876421111
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000 87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 166 (507)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 166 (507)
.+..+..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++..+|+
T Consensus 68 ------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 68 ------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp ------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred ------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 12235678999999999999999999999999999999999999999999999999999999998886
Q ss_pred c
Q psy12000 167 S 167 (507)
Q Consensus 167 ~ 167 (507)
+
T Consensus 136 ~ 136 (136)
T 2fo7_A 136 S 136 (136)
T ss_dssp C
T ss_pred C
Confidence 3
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.55 E-value=6e-14 Score=133.72 Aligned_cols=172 Identities=11% Similarity=-0.052 Sum_probs=127.3
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCCc------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhh
Q psy12000 106 LASIHFLRCHYQEAIDIYKRILLDHKD------LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY 179 (507)
Q Consensus 106 la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~ 179 (507)
.|.+|...|++++|+..|.+++...+. ...++.++|.+|..+|++++|+..|++++...+.
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~------------- 108 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE------------- 108 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH-------------
Confidence 467888999999999999999998753 2568889999999999999999999999865332
Q ss_pred hccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHH
Q psy12000 180 KLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSRE 259 (507)
Q Consensus 180 ~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 259 (507)
.|+... ...++.++|.+|.. |++++|+..+++..
T Consensus 109 -~g~~~~-------------------~a~~~~~lg~~~~~-g~~~~A~~~~~~Al------------------------- 142 (307)
T 2ifu_A 109 -NGTPDT-------------------AAMALDRAGKLMEP-LDLSKAVHLYQQAA------------------------- 142 (307)
T ss_dssp -TTCHHH-------------------HHHHHHHHHHHHTT-TCHHHHHHHHHHHH-------------------------
T ss_pred -cCCHHH-------------------HHHHHHHHHHHHHc-CCHHHHHHHHHHHH-------------------------
Confidence 122211 12457788999988 99999998886531
Q ss_pred HHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc------hHHHHHHHHHHhhCCHHH
Q psy12000 260 MVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD------SFNFNFAQAKCALGQYKE 333 (507)
Q Consensus 260 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~------~~~~~lg~~~~~~g~~~~ 333 (507)
.++..... ......++..+|.++..+|+|++|+.+|+++....|+.. .+++++|.++..+|++++
T Consensus 143 ------~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 143 ------AVFENEER---LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp ------HHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ------HHHHhCCC---hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 11110000 000012234689999999999999999999887655432 356778999999999999
Q ss_pred HHHHHHhhcccCC
Q psy12000 334 AEEMFLLVQNEGL 346 (507)
Q Consensus 334 A~~~~~~~~~~~~ 346 (507)
|+..|++++ ..|
T Consensus 214 A~~~~~~al-~~p 225 (307)
T 2ifu_A 214 AQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHT-TST
T ss_pred HHHHHHHHh-CCC
Confidence 999999998 554
No 105
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.55 E-value=6.4e-15 Score=124.20 Aligned_cols=123 Identities=11% Similarity=0.054 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHH
Q psy12000 22 YKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLE 101 (507)
Q Consensus 22 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (507)
+-.+-..|+++++.+|.+.++++.+|.+++..|++++|+..|+++....+.+ +.
T Consensus 3 ~~~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------~~ 56 (148)
T 2vgx_A 3 LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD--------------------------SR 56 (148)
T ss_dssp ---CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------------HH
T ss_pred ccchhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc--------------------------HH
Confidence 3344567889999999999999999999999999999999998774322221 23
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA 170 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a 170 (507)
.++.+|.++...|++++|+..|++++..+|+++.+++++|.++..+|++++|++.|++++..+|+++..
T Consensus 57 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 57 FFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 367899999999999999999999999999999999999999999999999999999999999987753
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.54 E-value=4e-13 Score=126.49 Aligned_cols=139 Identities=12% Similarity=-0.020 Sum_probs=114.2
Q ss_pred HhhcCH-HHHHHHHHHHhcCCCCChhhHHHHHHHHHhhc--cHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHH
Q psy12000 17 FHLGQY-KQALGIYETLRHLPNPPEDTEFNIASCYFYLG--MYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYH 93 (507)
Q Consensus 17 ~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (507)
...|.+ ++|+..+.+++..+|++..+|+..+.++..+| .+++++.++.++....+++.
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y------------------- 103 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY------------------- 103 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC-------------------
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH-------------------
Confidence 445555 68999999999999999999999999999999 99999999887754333221
Q ss_pred HHHhhcHHHHHHHHHHH----HHh---hcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcC
Q psy12000 94 QKLEDSLEEQLCLASIH----FLR---CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYD--VSQEQVAMYLAQK 164 (507)
Q Consensus 94 ~~l~~~~~~~~~la~~~----~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~~l~~~ 164 (507)
..+...+.++ ... +++++++.++.+++..+|.+..++++.+.+...+|.++ ++++.+++++..+
T Consensus 104 -------~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 104 -------QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp -------HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence 1122233333 344 78999999999999999999999999999999999999 9999999999999
Q ss_pred CCcHHHHHHHhhhhhhc
Q psy12000 165 PTSRIALNLKACNTYKL 181 (507)
Q Consensus 165 p~~~~a~~~~a~~~~~~ 181 (507)
|.+..|+..++.+....
T Consensus 177 ~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 177 LKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp TTCHHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99998887776665443
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.54 E-value=6.4e-14 Score=145.48 Aligned_cols=151 Identities=7% Similarity=-0.057 Sum_probs=96.5
Q ss_pred hcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhh
Q psy12000 19 LGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLED 98 (507)
Q Consensus 19 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 98 (507)
.|++++|+..|+++++.+|++..+++.+|.++...|++++|+..++++....+..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------------------------- 56 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH------------------------- 56 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC-------------------------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------------------
Confidence 4778888888888888888888888888888888888888888887775433321
Q ss_pred cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhh
Q psy12000 99 SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNT 178 (507)
Q Consensus 99 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~ 178 (507)
+..+..+|.++..+|++++|+..|+++++.+|++..+++++|.++..+|++++|++.++++++.+|++..++..++.++
T Consensus 57 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 135 (568)
T 2vsy_A 57 -PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWR 135 (568)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1225567777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhc---cChHHHHHhhHHHH
Q psy12000 179 YKL---FTSRAAENQLKPIL 195 (507)
Q Consensus 179 ~~~---~~~~~A~~~l~~~~ 195 (507)
... |++++|...+++++
T Consensus 136 ~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 136 RRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHTTCCTTHHHHHHHHHHHH
T ss_pred HHhhccccHHHHHHHHHHHH
Confidence 777 77777777666654
No 108
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.53 E-value=2.6e-12 Score=121.55 Aligned_cols=164 Identities=7% Similarity=-0.059 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCC-HHHHHHHHHhhcccCCCchhhh--hhhhcccCccchhhhHHHHHH
Q psy12000 297 FKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQ-YKEAEEMFLLVQNEGLKNDYVY--ISHLTKCSPSRAKTRLSFHLS 373 (507)
Q Consensus 297 ~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~ 373 (507)
+++++.+++++.+.+|.+..++.+++.+....|. ++++++++.+++..+|.+...+ .+. +.
T Consensus 126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~----------------ll 189 (331)
T 3dss_A 126 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC----------------LL 189 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHH----------------HH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHH----------------HH
Confidence 5666666777777777666666667777777776 4777777777665555443222 211 00
Q ss_pred HHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhcccc-----------cc
Q psy12000 374 HKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKL-----------DY 442 (507)
Q Consensus 374 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~-----------g~ 442 (507)
.++...... .. ..-...+.++++++++++++..+|++..+.+++.+++.+. +.
T Consensus 190 ~~l~~~~~~-------~~---------~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~ 253 (331)
T 3dss_A 190 PQLHPQPDS-------GP---------QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTV 253 (331)
T ss_dssp HHHSCCC----------------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHH
T ss_pred HHhhhcccc-------cc---------ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHH
Confidence 111000000 00 0000125689999999999999999999887776666665 56
Q ss_pred chhHHHHHHHHHhcCCCchhhhhHHHhhhh-----hcCChHHHHHHHHHHHHhCCCC
Q psy12000 443 YDVSQEQVAMYLAQKPTSRIALNLKACNTY-----KLFTSRAAENQLKPILVSAGPR 494 (507)
Q Consensus 443 ~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
++++++.++++++.+||+. +.+++.+.+ .....+....-+.+|.+.+|-|
T Consensus 254 l~~el~~~~elle~~pd~~--w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 254 LQSELESCKELQELEPENK--WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhhCcccc--hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 8899999999999999995 445544433 1233445566899999999987
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.52 E-value=1e-13 Score=144.00 Aligned_cols=164 Identities=9% Similarity=-0.059 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHH
Q psy12000 259 EMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMF 338 (507)
Q Consensus 259 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 338 (507)
+.+++|+..+++.... .++...++..+|.++...|++++|+.+++++...+|++..+++++|.+|..+|++++|++.|
T Consensus 3 g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4677888888765433 34445667789999999999999999999999999999888999999999999999999999
Q ss_pred HhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHH
Q psy12000 339 LLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKR 418 (507)
Q Consensus 339 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~ 418 (507)
++++..++.+... ...++.++...|++++|+..|++
T Consensus 81 ~~al~~~p~~~~~--------------------------------------------~~~la~~~~~~g~~~~A~~~~~~ 116 (568)
T 2vsy_A 81 QQASDAAPEHPGI--------------------------------------------ALWLGHALEDAGQAEAAAAAYTR 116 (568)
T ss_dssp HHHHHHCTTCHHH--------------------------------------------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCCCCHHH--------------------------------------------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 9987655432111 13356688888999999999999
Q ss_pred HhhcCCchhhhHHHHHhhcccc---ccchhHHHHHHHHHhcCCCchhhhhHHH
Q psy12000 419 ILLDHKDLLALNVYGAMCYYKL---DYYDVSQEQVAMYLAQKPTSRIALNLKA 468 (507)
Q Consensus 419 ~l~~~p~~~~~~~~la~~y~~~---g~~~~A~~~~~~~l~~~P~~~~a~~~~~ 468 (507)
+++.+|+++.++..+|.++..+ |++++|++.++++++.+|++...+.+++
T Consensus 117 al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 117 AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999999999999999999999 9999999999999999999999888777
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.51 E-value=4.3e-13 Score=127.76 Aligned_cols=140 Identities=9% Similarity=-0.037 Sum_probs=103.6
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHhhhhcCC--C----chHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhc
Q psy12000 284 RQCMASSFFLLRSFKDVILYLSSIKSYYTS--D----DSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLT 357 (507)
Q Consensus 284 ~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 357 (507)
+..+|.+|...|++++|+.+++++....+. + ..++.++|.+|.. |++++|+.+|++++...+
T Consensus 79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~----------- 146 (307)
T 2ifu_A 79 FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFE----------- 146 (307)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH-----------
Confidence 345788999999999999999988766432 1 2456789999999 999999999999864321
Q ss_pred ccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchh------hhHH
Q psy12000 358 KCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL------ALNV 431 (507)
Q Consensus 358 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~------~~~~ 431 (507)
..++....... ...++.++...|+|++|+.+|++++...|+.. ..+.
T Consensus 147 -----------------~~~~~~~~~~~----------~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 199 (307)
T 2ifu_A 147 -----------------NEERLRQAAEL----------IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCI 199 (307)
T ss_dssp -----------------HTTCHHHHHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------hCCChhHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 11111111111 13345677788999999999999998765442 3667
Q ss_pred HHHhhccccccchhHHHHHHHHHhcCCCchhh
Q psy12000 432 YGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA 463 (507)
Q Consensus 432 ~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a 463 (507)
.+|.++..+|++++|+..|++++ .+|+...+
T Consensus 200 ~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 200 AQVLVQLHRADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence 78899999999999999999999 99987644
No 111
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.50 E-value=2.5e-14 Score=119.57 Aligned_cols=121 Identities=15% Similarity=0.081 Sum_probs=101.7
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHH
Q psy12000 26 LGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLC 105 (507)
Q Consensus 26 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 105 (507)
-..|+++++.+|++.+.++.+|.+++..|++++|+..|+++....+.+ +..++.
T Consensus 4 ~~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------~~~~~~ 57 (142)
T 2xcb_A 4 GGTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD--------------------------ARYFLG 57 (142)
T ss_dssp -----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------------HHHHHH
T ss_pred chhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc--------------------------HHHHHH
Confidence 357888899999999999999999999999999999998764322221 223678
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q psy12000 106 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN 172 (507)
Q Consensus 106 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~ 172 (507)
+|.++...|++++|+..|++++..+|+++.+++++|.++..+|++++|++.|++++..+|+++....
T Consensus 58 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 58 LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 9999999999999999999999999999999999999999999999999999999999998876433
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.50 E-value=1.5e-13 Score=123.03 Aligned_cols=134 Identities=17% Similarity=0.148 Sum_probs=115.8
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE 86 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (507)
-..+.+|.+++..|++++|+..|++++ +| ++.+++.+|.++...|++++|+..++++....+.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------------- 69 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-------------- 69 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--------------
Confidence 345678999999999999999999996 34 6789999999999999999999999876432111
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh----------------HHHHHHHHHHHhcCCH
Q psy12000 87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL----------------ALNVYGAMCYYKLDYY 150 (507)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----------------~~~~~la~~~~~~g~~ 150 (507)
.+..++.+|.++...|++++|+..|++++...|++. .+++++|.++..+|++
T Consensus 70 ------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (213)
T 1hh8_A 70 ------------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137 (213)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred ------------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH
Confidence 123367899999999999999999999999877655 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHH
Q psy12000 151 DVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 151 ~~A~~~~~~~l~~~p~~~~ 169 (507)
++|++.|++++..+|++..
T Consensus 138 ~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 138 KKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp HHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHHHHcCccccc
Confidence 9999999999999998753
No 113
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.49 E-value=5.4e-15 Score=142.78 Aligned_cols=122 Identities=16% Similarity=0.154 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch---------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDL---------------LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 166 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 166 (507)
.+..+|.+++..|+|++|+..|++++..+|++ ..+++++|.|+..+|++++|+..|++++..+|+
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 37789999999999999999999999999998 689999999999999999999999999999999
Q ss_pred cHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHH
Q psy12000 167 SRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFD 228 (507)
Q Consensus 167 ~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 228 (507)
++.+++.+|.+++.+|++++|+..|+++++ ..|..+.++.+++.++...|++++|..
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-----l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQ-----LYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998763 356677899999999999999999843
No 114
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.49 E-value=4.7e-14 Score=122.64 Aligned_cols=134 Identities=8% Similarity=-0.015 Sum_probs=112.8
Q ss_pred HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHH
Q psy12000 13 GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEY 92 (507)
Q Consensus 13 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (507)
+..+...|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..++++....+.
T Consensus 17 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------------------- 76 (177)
T 2e2e_A 17 LHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-------------------- 76 (177)
T ss_dssp TCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--------------------
T ss_pred hhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------------
Confidence 344677899999999999999999999999999999999999999999999886432221
Q ss_pred HHHHhhcHHHHHHHHHH-HHHhhcH--HHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 93 HQKLEDSLEEQLCLASI-HFLRCHY--QEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 93 ~~~l~~~~~~~~~la~~-~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
.+..+..+|.+ +...|++ ++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+++.
T Consensus 77 ------~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 77 ------NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp ------CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred ------CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 12236678888 7899999 99999999999999999999999999999999999999999999999999865
Q ss_pred HHH
Q psy12000 170 ALN 172 (507)
Q Consensus 170 a~~ 172 (507)
...
T Consensus 151 ~~~ 153 (177)
T 2e2e_A 151 RTQ 153 (177)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 115
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.49 E-value=3.8e-14 Score=119.39 Aligned_cols=120 Identities=12% Similarity=0.094 Sum_probs=102.2
Q ss_pred HHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHH
Q psy12000 303 YLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSL 382 (507)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 382 (507)
.++++...+|++..+++.+|.++...|++++|+..|++++..+|.+...+
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------------------------------ 58 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFF------------------------------ 58 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------------------------------
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHH------------------------------
Confidence 56677778888888889999999999999999999999886665433222
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchh
Q psy12000 383 MEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 462 (507)
Q Consensus 383 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~ 462 (507)
..+|.++...|++++|+..|++++..+|+++.+++++|.+|..+|++++|+..|+++++..|++|.
T Consensus 59 --------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 59 --------------LGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp --------------HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred --------------HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 234557777899999999999999999999999999999999999999999999999999999987
Q ss_pred hhhH
Q psy12000 463 ALNL 466 (507)
Q Consensus 463 a~~~ 466 (507)
....
T Consensus 125 ~~~~ 128 (148)
T 2vgx_A 125 FXEL 128 (148)
T ss_dssp GHHH
T ss_pred chHH
Confidence 6443
No 116
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.48 E-value=7e-13 Score=108.54 Aligned_cols=133 Identities=19% Similarity=0.241 Sum_probs=109.7
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccc
Q psy12000 284 RQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSR 363 (507)
Q Consensus 284 ~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 363 (507)
+..+|.++...|++++|+.+++++....|++..+++.+|.++...|++++|+..|++++...+.....+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----------- 72 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW----------- 72 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH-----------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHH-----------
Confidence 345788999999999999999999888888887888899999999999999999998865443221111
Q ss_pred hhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccc
Q psy12000 364 AKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYY 443 (507)
Q Consensus 364 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~ 443 (507)
..++.++...|++++|+..+++++...|+.+.++..+|.+|.+.|++
T Consensus 73 ---------------------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 119 (136)
T 2fo7_A 73 ---------------------------------YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 119 (136)
T ss_dssp ---------------------------------HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred ---------------------------------HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccH
Confidence 22344666778999999999999999999888888999999999999
Q ss_pred hhHHHHHHHHHhcCCCc
Q psy12000 444 DVSQEQVAMYLAQKPTS 460 (507)
Q Consensus 444 ~~A~~~~~~~l~~~P~~ 460 (507)
++|+..++.+++.+|++
T Consensus 120 ~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 120 DEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHccCCCC
Confidence 99999999999998874
No 117
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.46 E-value=1.4e-14 Score=139.87 Aligned_cols=159 Identities=16% Similarity=0.116 Sum_probs=131.6
Q ss_pred hhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHh
Q psy12000 18 HLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLE 97 (507)
Q Consensus 18 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 97 (507)
.++++++|+..|+++++.+|..+.++..+|.+++..|++++|+..|+++....+.... . ...... .+.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~-~~~~~~----~~~ 192 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS-------F-SNEEAQ----KAQ 192 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC-------C-CSHHHH----HHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc-------C-ChHHHH----HHH
Confidence 5677888999999888888999999999999999999999999999987542221100 0 000000 011
Q ss_pred -hcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000 98 -DSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC 176 (507)
Q Consensus 98 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~ 176 (507)
.....++++|.++...|++++|+..|++++..+|+++.+++++|.++..+|++++|+..|++++..+|++..++..++.
T Consensus 193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 1123378999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccChHHHH
Q psy12000 177 NTYKLFTSRAAE 188 (507)
Q Consensus 177 ~~~~~~~~~~A~ 188 (507)
++...|++++|.
T Consensus 273 ~~~~~~~~~~a~ 284 (336)
T 1p5q_A 273 CQQRIRRQLARE 284 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888888774
No 118
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.46 E-value=2.2e-12 Score=120.21 Aligned_cols=189 Identities=8% Similarity=-0.035 Sum_probs=104.5
Q ss_pred HHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCC-CchhhhhhhhcccCccchhhhHHHHHHHHcCC
Q psy12000 300 VILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGL-KNDYVYISHLTKCSPSRAKTRLSFHLSHKLGD 378 (507)
Q Consensus 300 Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 378 (507)
|+..+++.....+.++..++.+|.++...|++++|+.++.+.++.++ .....-...++.++.+.|+.+.|.+.+.++..
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555555444333333344556666666666666666666554432 11111111223333334444444333322111
Q ss_pred cHH-HHHHHHHhhhcHHHHHHHHHHHHhHh--hHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHh
Q psy12000 379 EKS-LMEYHQKLEDSLEEQLCLASIHFLRC--HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA 455 (507)
Q Consensus 379 ~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~--~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~ 455 (507)
.++ .+..- +.+--++.-+++....| ++++|+.+|+++.+..|++......++ ++.++|++++|.+.++.+++
T Consensus 165 ~~~d~~~~~----d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 AIEDTVSGD----NEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HSCHHHHHH----HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHS
T ss_pred cCccccccc----hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHH
Confidence 000 00000 00000122345666666 899999999999888887333233333 89999999999999998877
Q ss_pred c----------CCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCc
Q psy12000 456 Q----------KPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRV 495 (507)
Q Consensus 456 ~----------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (507)
. +|+++.++-.+..+.+.++ +.+.+.++.+.+..|.|.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg--k~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQG--LDTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTT--CTTHHHHHHHHHTTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhC--hHHHHHHHHHHHhCCCCh
Confidence 6 4889999833333333333 477888999999999883
No 119
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.46 E-value=1.2e-13 Score=115.44 Aligned_cols=123 Identities=14% Similarity=0.105 Sum_probs=100.2
Q ss_pred HHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHH
Q psy12000 303 YLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSL 382 (507)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 382 (507)
.|+++...+|++...++.+|.++...|++++|+..|++++..+|.+...+
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------------------------------ 55 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYF------------------------------ 55 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------------------------------
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHH------------------------------
Confidence 45667777787777888899999999999999999999876665433222
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchh
Q psy12000 383 MEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 462 (507)
Q Consensus 383 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~ 462 (507)
..+|.++...|++++|+..|++++..+|+++.+++.+|.+|..+|++++|+..|+++++++|+++.
T Consensus 56 --------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 56 --------------LGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp --------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred --------------HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 234456777799999999999999999999999999999999999999999999999999999988
Q ss_pred hhhHHHh
Q psy12000 463 ALNLKAC 469 (507)
Q Consensus 463 a~~~~~~ 469 (507)
...++..
T Consensus 122 ~~~~~~~ 128 (142)
T 2xcb_A 122 HEALAAR 128 (142)
T ss_dssp GHHHHHH
T ss_pred hHHHHHH
Confidence 7554433
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.45 E-value=1.1e-12 Score=123.29 Aligned_cols=192 Identities=13% Similarity=0.062 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL 181 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~ 181 (507)
.+..+|.+++..|++++|+..|++++..+|+++.+++++|.++..+|++++|+..+++++..+|++..+++.+|.++...
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 36789999999999999999999999999999999999999999999999999999999999999988777777777777
Q ss_pred cChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHH
Q psy12000 182 FTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMV 261 (507)
Q Consensus 182 ~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (507)
|++++|...++++.+ +.|.++..+..........+.. ..+
T Consensus 86 g~~~~A~~~~~~al~------------------------------------l~p~~~~~~~~~~~~~~~~~~~----~~~ 125 (281)
T 2c2l_A 86 ESYDEAIANLQRAYS------------------------------------LAKEQRLNFGDDIPSALRIAKK----KRW 125 (281)
T ss_dssp TCHHHHHHHHHHHHH------------------------------------HHHHTTCCCCSHHHHHHHHHHH----HHH
T ss_pred CCHHHHHHHHHHHHH------------------------------------hCccchhhHHHHHHHHHHHHHH----HHH
Confidence 777777766665432 0010000000000000000000 000
Q ss_pred HHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhh-CCHHHHHHHHHh
Q psy12000 262 KAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCAL-GQYKEAEEMFLL 340 (507)
Q Consensus 262 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~ 340 (507)
.... ....+.++ .....++.. ..|++++|++.++.+....|++......++..+... +.+++|.+.|.+
T Consensus 126 ~~~~-----~~~~~~~~---~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~ 195 (281)
T 2c2l_A 126 NSIE-----ERRIHQES---ELHSYLTRL--IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQ 195 (281)
T ss_dssp HHHH-----HTCCCCCC---HHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHhhhH---HHHHHHHHH--HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000 00111111 111123343 379999999999999988888766666677666665 789999999998
Q ss_pred hcc
Q psy12000 341 VQN 343 (507)
Q Consensus 341 ~~~ 343 (507)
+.+
T Consensus 196 a~~ 198 (281)
T 2c2l_A 196 VDE 198 (281)
T ss_dssp SSC
T ss_pred hhc
Confidence 864
No 121
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.45 E-value=1.6e-13 Score=114.33 Aligned_cols=114 Identities=11% Similarity=-0.044 Sum_probs=90.8
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE 86 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (507)
...+..|..++..|+|++|+..|+++++.+|++++. .+....+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~----------------------~a~~~~~~-------------- 55 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE----------------------EAFDHAGF-------------- 55 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT----------------------SCCCHHHH--------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch----------------------hhhhhccc--------------
Confidence 445668999999999999999999999999886543 01000000
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-------CCchhHHH----HHHHHHHHhcCCHHHHHH
Q psy12000 87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD-------HKDLLALN----VYGAMCYYKLDYYDVSQE 155 (507)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~----~~la~~~~~~g~~~~A~~ 155 (507)
....+.++|.++...|+|++|+..|+++|.. +|++..++ +++|.++..+|++++|+.
T Consensus 56 ------------~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~ 123 (159)
T 2hr2_A 56 ------------DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMP 123 (159)
T ss_dssp ------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH
Confidence 0112667888888888888888888888888 99999999 999999999999999999
Q ss_pred HHHHHHhcCCCcH
Q psy12000 156 QVAMYLAQKPTSR 168 (507)
Q Consensus 156 ~~~~~l~~~p~~~ 168 (507)
.|++++.++|++.
T Consensus 124 ~y~kAlel~p~d~ 136 (159)
T 2hr2_A 124 EFKKVVEMIEERK 136 (159)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHhcCCCcH
Confidence 9999999999875
No 122
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.45 E-value=3.1e-13 Score=117.38 Aligned_cols=135 Identities=9% Similarity=-0.014 Sum_probs=110.2
Q ss_pred HHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHH
Q psy12000 291 FFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSF 370 (507)
Q Consensus 291 ~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 370 (507)
+...|++++|+..++++....|++..+++.+|.+|...|++++|+.+|++++...+.+...+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~------------------ 81 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELY------------------ 81 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHH------------------
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH------------------
Confidence 56789999999999999999999988999999999999999999999999876544332111
Q ss_pred HHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHH-HHhHhhH--HHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHH
Q psy12000 371 HLSHKLGDEKSLMEYHQKLEDSLEEQLCLASI-HFLRCHY--QEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQ 447 (507)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~-~~~~~~~--~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~ 447 (507)
..++.+ ++..|++ ++|+..|++++..+|+++.+++.+|.+|..+|++++|+
T Consensus 82 --------------------------~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 135 (177)
T 2e2e_A 82 --------------------------AALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAI 135 (177)
T ss_dssp --------------------------HHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------HHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHH
Confidence 223345 4566888 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHh
Q psy12000 448 EQVAMYLAQKPTSRIALNLKAC 469 (507)
Q Consensus 448 ~~~~~~l~~~P~~~~a~~~~~~ 469 (507)
..++++++.+|+++....+...
T Consensus 136 ~~~~~al~~~p~~~~~~~~~~~ 157 (177)
T 2e2e_A 136 ELWQKVMDLNSPRINRTQLVES 157 (177)
T ss_dssp HHHHHHHHTCCTTSCHHHHHHH
T ss_pred HHHHHHHhhCCCCccHHHHHHH
Confidence 9999999999999876554443
No 123
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.44 E-value=6.7e-12 Score=112.49 Aligned_cols=166 Identities=10% Similarity=0.014 Sum_probs=107.0
Q ss_pred cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCCcHHHHHHH
Q psy12000 99 SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD----YYDVSQEQVAMYLAQKPTSRIALNLK 174 (507)
Q Consensus 99 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~~l~~~p~~~~a~~~~ 174 (507)
++..++.+|.+|...+++++|+.+|++++.. +++.+++++|.+|.. + ++++|+++|+++.+ +.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g-------- 83 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AG-------- 83 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TT--------
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CC--------
Confidence 3444556666666666666666666665543 345556666666655 4 56666665555532 12
Q ss_pred hhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHh----hccHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy12000 175 ACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLK----QEEHQEAFDLIKNLEPSVPQEYILKAVVQVT 250 (507)
Q Consensus 175 a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 250 (507)
.+.+.++||.+|.. .+++++|+..+++.....+..
T Consensus 84 -------------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~---------- 122 (212)
T 3rjv_A 84 -------------------------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD---------- 122 (212)
T ss_dssp -------------------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH----------
T ss_pred -------------------------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc----------
Confidence 33456677777766 667777777776543322210
Q ss_pred hhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHh----hcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHH
Q psy12000 251 IGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFL----LRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKC 326 (507)
Q Consensus 251 ~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~ 326 (507)
+...+...||.+|.. .+++++|+.+|+++... |.++.+.+++|.+|.
T Consensus 123 ----------------------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 123 ----------------------------AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred ----------------------------chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 001234467888888 88999999999999877 555668899999998
Q ss_pred hh-C-----CHHHHHHHHHhhcccCCC
Q psy12000 327 AL-G-----QYKEAEEMFLLVQNEGLK 347 (507)
Q Consensus 327 ~~-g-----~~~~A~~~~~~~~~~~~~ 347 (507)
.. | ++++|+.+|+++.+..+.
T Consensus 174 ~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 174 QGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 64 3 899999999998765543
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.44 E-value=1e-12 Score=112.33 Aligned_cols=129 Identities=11% Similarity=-0.026 Sum_probs=104.5
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChh
Q psy12000 8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEK 87 (507)
Q Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (507)
..+.+|.+++..|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..++++....+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--------------- 79 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--------------- 79 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------------
Confidence 45668999999999999999999999999999999999999999999999999988876432111
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHH--HHHhcCCHHHHHHHHHHHHh
Q psy12000 88 SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAM--CYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 88 ~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~~l~ 162 (507)
.+..++.+|.++...|++++|+.+|++++..+|++..++..++. .+...|++++|++.+.+...
T Consensus 80 -----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 80 -----------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 12236678889999999999999999999999988877755444 47888999999988887653
No 125
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.42 E-value=1.1e-12 Score=107.31 Aligned_cols=106 Identities=17% Similarity=0.133 Sum_probs=86.0
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccc-hHHHHHHhcCCh
Q psy12000 8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTR-LSFHLSHKLGDE 86 (507)
Q Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 86 (507)
+...+|.+++..|+|++|+..|+++++.+|+++.+|.++|.+++.+|++++|+..++++....+... ....+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~------- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI------- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH-------
Confidence 3446899999999999999999999999999999999999999999999999999998754222110 01011
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch
Q psy12000 87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL 133 (507)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 133 (507)
...+..+|.++...|++++|++.|++++...|+.
T Consensus 83 -------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 83 -------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 1125678999999999999999999999888863
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.42 E-value=4.8e-13 Score=123.05 Aligned_cols=211 Identities=13% Similarity=0.022 Sum_probs=162.4
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHH-------HHHHHhhccHHHHHHHHHhCCCCcccc-chHHHHHHh
Q psy12000 11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNI-------ASCYFYLGMYLQANQILEKVPPSRAKT-RLSFHLSHK 82 (507)
Q Consensus 11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~~~~~ 82 (507)
..|..+ .-+++..|.+.|.++++.+|..+++|..+ +.++...++..+++-.+.+.....+.. ...+.+.-.
T Consensus 12 ~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 12 ESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGL 90 (282)
T ss_dssp HHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTT
T ss_pred HHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCc
Confidence 345555 68999999999999999999999999999 899999999999999888876633322 111110000
Q ss_pred cCChhHHHHHHHHHhhcH-HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000 83 LGDEKSLMEYHQKLEDSL-EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL 161 (507)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 161 (507)
+++.. .-...+ ...+.+|.++...|+|++|.+.|..++...|+.. +.+.+|.++++.|+|++|+..|+...
T Consensus 91 y~~~~-------~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~ 162 (282)
T 4f3v_A 91 YGDIT-------YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAG 162 (282)
T ss_dssp TCCCE-------EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred ccccc-------cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 00000 000011 1266789999999999999999999999999998 99999999999999999999999776
Q ss_pred hcC-CCc-HHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCC-hhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000 162 AQK-PTS-RIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDV-IPESRLNLVIYHLKQEEHQEAFDLIKNL 233 (507)
Q Consensus 162 ~~~-p~~-~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~l~~~ 233 (507)
... |.. ..+...+|.++..+|++++|+..+++... ....|. .+++.+++|.++.++|+.++|...++++
T Consensus 163 ~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~---g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 163 KWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND---SPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc---CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 543 221 23677889999999999999999998742 122133 6789999999999999999999999876
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.41 E-value=2.8e-12 Score=120.41 Aligned_cols=101 Identities=18% Similarity=0.074 Sum_probs=63.5
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE 86 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (507)
.....+|..++..|+|++|+..|+++++.+|+++.+++++|.++..+|++++|+..++++....+.+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------------- 71 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------------- 71 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------------
Confidence 4455677777777777777777777777777777777777777766666666666666554432221
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch
Q psy12000 87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL 133 (507)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 133 (507)
+..++.+|.++...|++++|+..|++++..+|++
T Consensus 72 -------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 72 -------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 1113455555666666666666666666555544
No 128
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.41 E-value=3.2e-12 Score=114.65 Aligned_cols=171 Identities=11% Similarity=0.012 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHH
Q psy12000 24 QALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQ 103 (507)
Q Consensus 24 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (507)
+|+++|+++.+. .++++++.+|.++...+++++|+.+|+++.+.. ++..+
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----------------------------~~~a~ 53 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----------------------------DGDAL 53 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----------------------------CHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----------------------------CHHHH
Confidence 355566666543 455566666666666666666666666553210 11124
Q ss_pred HHHHHHHHHhh----cHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC--cHHHHHH
Q psy12000 104 LCLASIHFLRC----HYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQKPT--SRIALNL 173 (507)
Q Consensus 104 ~~la~~~~~~g----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~--~~~a~~~ 173 (507)
+.+|.+|.. + ++++|+.+|++++ .+.++.+++++|.+|.. .+++++|+++|++++...|. ++.+.+.
T Consensus 54 ~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~ 130 (212)
T 3rjv_A 54 ALLAQLKIR-NPQQADYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQML 130 (212)
T ss_dssp HHHHHHTTS-STTSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHH
T ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence 455555555 4 5666666666653 23455556666666655 55666666666666655552 3555555
Q ss_pred Hhhhhhh----ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhh-c-----cHHHHHHHHHhc
Q psy12000 174 KACNTYK----LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQ-E-----EHQEAFDLIKNL 233 (507)
Q Consensus 174 ~a~~~~~----~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~A~~~l~~~ 233 (507)
++.++.. .+++++|...+++..+ . +..+.+.++||.+|..- | ++++|+..+++.
T Consensus 131 Lg~~y~~g~g~~~d~~~A~~~~~~A~~-----~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 131 LGLIYASGVHGPEDDVKASEYFKGSSS-----L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp HHHHHHHTSSSSCCHHHHHHHHHHHHH-----T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHH-----c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 5555554 4455666665555432 1 22334566666666542 2 677777766653
No 129
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.41 E-value=1.6e-11 Score=114.33 Aligned_cols=250 Identities=14% Similarity=0.108 Sum_probs=158.2
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000 8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPE-DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE 86 (507)
Q Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (507)
..+.--+.+|..|+|..++...+ +..|.+. ...+++.++++.+|++... ....+...++-.++.-. ..
T Consensus 15 ~~lf~ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~~~~~~~a~~~la~~~-~~ 83 (310)
T 3mv2_B 15 MDYFNIKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ-------DPTSKLGKVLDLYVQFL-DT 83 (310)
T ss_dssp CCTHHHHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC-------CSSSTTHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC-------CCCCHHHHHHHHHHHHh-cc
Confidence 34445667888999999998544 3444443 4667889999999998742 11111111111122111 22
Q ss_pred hHHHHHHHHHhh---cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC--chhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000 87 KSLMEYHQKLED---SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK--DLLALNVYGAMCYYKLDYYDVSQEQVAMYL 161 (507)
Q Consensus 87 ~~~~~~~~~l~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 161 (507)
+++....+.+.. .+..++.+|.++...|++++|+..+.+.+..+| ++.+++..++.++.++|+.+.|.+.++++.
T Consensus 84 ~a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 84 KNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp TCCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 222233333322 233367888888888888888888888888886 788888888888888888888888888888
Q ss_pred hcCCC-----cHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhc--cHHHHHHHHHhcC
Q psy12000 162 AQKPT-----SRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQE--EHQEAFDLIKNLE 234 (507)
Q Consensus 162 ~~~p~-----~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~l~~~~ 234 (507)
+.+|+ +....+ +.-+.+.+.+| ++++|+..|+++.
T Consensus 164 ~~~~d~~~~~d~~l~~--------------------------------------Laea~v~l~~g~~~~q~A~~~f~El~ 205 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILN--------------------------------------LAESYIKFATNKETATSNFYYYEELS 205 (310)
T ss_dssp HHSCHHHHHHHHHHHH--------------------------------------HHHHHHHHHHTCSTTTHHHHHHHHHH
T ss_pred hcCccccccchHHHHH--------------------------------------HHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 88873 221111 11112233334 6677766666553
Q ss_pred CCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhh----
Q psy12000 235 PSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSY---- 310 (507)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~---- 310 (507)
...|... .....++ ++..+|++++|...++.+.+.
T Consensus 206 ~~~p~~~----------------------------------------~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 206 QTFPTWK----------------------------------------TQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp TTSCSHH----------------------------------------HHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred HhCCCcc----------------------------------------cHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccc
Confidence 3332100 0001123 788889999999888876655
Q ss_pred ------cCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCch
Q psy12000 311 ------YTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKND 349 (507)
Q Consensus 311 ------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~ 349 (507)
+|+++.++.|++.+...+|+ +|.+++.++....|.+.
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 47778888788888888887 88888888876665544
No 130
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.40 E-value=1.2e-12 Score=106.92 Aligned_cols=99 Identities=10% Similarity=0.063 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
+..+|.+++.+|+|++|+..|+++++.+|+++.++.++|.||..+|++++|++.+++++..+|++...+...
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-------- 82 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI-------- 82 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH--------
Confidence 568999999999999999999999999999999999999999999999999999999999888765432211
Q ss_pred ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000 183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL 233 (507)
Q Consensus 183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~ 233 (507)
..++.++|.++..+|++++|+..+.+.
T Consensus 83 ------------------------a~~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 83 ------------------------AKAMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp ------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 245778899999999999999988764
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.7e-12 Score=105.76 Aligned_cols=60 Identities=15% Similarity=0.030 Sum_probs=41.5
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhC
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV 66 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~ 66 (507)
.....+|.+++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..++++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 64 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 345557777888888888888888888777777777766666666666666665555544
No 132
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.40 E-value=1.3e-11 Score=110.34 Aligned_cols=140 Identities=16% Similarity=0.082 Sum_probs=110.8
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHH
Q psy12000 42 TEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAID 121 (507)
Q Consensus 42 ~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~ 121 (507)
.++.+|.+++..|++++|+..++++.+.. +..++.+|.++...|++++|+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-----------------------------~~~~~~lg~~~~~~g~~~~A~~ 58 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPH-----------------------------SRICFNIGCMYTILKNMTEAEK 58 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCC-----------------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCC-----------------------------hHHHHHHHHHHHHcCCHHHHHH
Confidence 46789999999999999999999985321 1226789999999999999999
Q ss_pred HHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCC
Q psy12000 122 IYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPP 201 (507)
Q Consensus 122 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~ 201 (507)
.|++++..+|+++.+++++|.++..+|++++|++.|++++...|++.... +... ...
T Consensus 59 ~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------~~~~-----------------~~~ 115 (213)
T 1hh8_A 59 AFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID------YKIL-----------------GLQ 115 (213)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEE------CGGG-----------------TBC
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHH------HHHh-----------------ccc
Confidence 99999999999999999999999999999999999999999988876210 0000 012
Q ss_pred CCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000 202 LIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL 233 (507)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~ 233 (507)
..+..+.++.++|.+|...|++++|+..+.+.
T Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 23344566777777777777777777777654
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.40 E-value=1.2e-11 Score=116.81 Aligned_cols=175 Identities=11% Similarity=0.014 Sum_probs=129.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhH------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLA------LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC 176 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~ 176 (507)
+...+..+...|+|++|+..|++++...|..+. .+..+|.++...|++++|+..+++++...+......
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~----- 152 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY----- 152 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT-----
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH-----
Confidence 345678889999999999999999998775443 334589999999999999999999998655432100
Q ss_pred hhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccC
Q psy12000 177 NTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTG 256 (507)
Q Consensus 177 ~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~ 256 (507)
....++.++|.+|..+|++++|+..+.+..
T Consensus 153 ----------------------------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al---------------------- 182 (293)
T 3u3w_A 153 ----------------------------QNLYIENAIANIYAENGYLKKGIDLFEQIL---------------------- 182 (293)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------
T ss_pred ----------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------
Confidence 012357789999999999999998886531
Q ss_pred cHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCC------chHHHHHHHHHHhhCC
Q psy12000 257 SREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSD------DSFNFNFAQAKCALGQ 330 (507)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~------~~~~~~lg~~~~~~g~ 330 (507)
+.++.... ..+....++..+|.+|..+|+|++|+.+++++....+.. ..+++++|.+|..+|+
T Consensus 183 ---------~~~~~~~~--~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 183 ---------KQLEALHD--NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp ---------HHHHHSSC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred ---------HHHHhccc--chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence 11111100 011112234578999999999999999999887655322 4577889999999995
Q ss_pred -HHHHHHHHHhhcc
Q psy12000 331 -YKEAEEMFLLVQN 343 (507)
Q Consensus 331 -~~~A~~~~~~~~~ 343 (507)
+++|+.+|++++.
T Consensus 252 ~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 252 EEAEIEDAYKKASF 265 (293)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 7999999999863
No 134
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.40 E-value=2.6e-09 Score=111.44 Aligned_cols=406 Identities=9% Similarity=-0.081 Sum_probs=240.1
Q ss_pred hhHHHHHHHHHhhcH---HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC---HHHHHHHHHH
Q psy12000 86 EKSLMEYHQKLEDSL---EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY---YDVSQEQVAM 159 (507)
Q Consensus 86 ~~~~~~~~~~l~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~ 159 (507)
.+.+..+...+..+| ..+..++......+.++.+..+|++++...|.....+..-+..-.+.|+ ++.+..+|++
T Consensus 49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp SCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 345556666666554 4477888888889999999999999999999999999988888888999 9999999999
Q ss_pred HHhcCC--CcHHHHHHHhhhhhhccCh----HHHH----HhhHHHHHhhCCCCCCChhHhHHHHHHHHH---------hh
Q psy12000 160 YLAQKP--TSRIALNLKACNTYKLFTS----RAAE----NQLKPILVSILPPLIDVIPESRLNLVIYHL---------KQ 220 (507)
Q Consensus 160 ~l~~~p--~~~~a~~~~a~~~~~~~~~----~~A~----~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~ 220 (507)
++...| .++..+..........++. +.+. ..|+.++. .+..-.+.....|...+.... .+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~-~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVD-KCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHH-HTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH-HhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 999883 3444333322211222222 2333 45554432 111102333456655554432 34
Q ss_pred ccHHHHHHHHHhcC--CCChHHHHHHHHHHHHh--hhc------cCcHHHHHHHHHHHHH-------hCCC-ccc-----
Q psy12000 221 EEHQEAFDLIKNLE--PSVPQEYILKAVVQVTI--GQD------TGSREMVKAAQALFQL-------VGSS-QSE----- 277 (507)
Q Consensus 221 ~~~~~A~~~l~~~~--~~~~~~~~~~~~~~~~~--g~~------~~~~~~~~~A~~~~~~-------~~~~-~~~----- 277 (507)
++.+.+..++.+.. |......+......+.. +.. ......|..|...+.. +... +..
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 56777878887653 32222211111111110 000 0111234444444432 1100 000
Q ss_pred ----c-----cchhhhhHHHHHHHhhcC---------HHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHH-HHH
Q psy12000 278 ----C-----DTVPGRQCMASSFFLLRS---------FKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAE-EMF 338 (507)
Q Consensus 278 ----~-----~~~~~~~~la~~~~~~~~---------~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~ 338 (507)
| +......+...+-+...+ .+.....|++++...|..+.+++..+..+...|+.++|. ..|
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 0 001112344444444433 233456889999899999999999999999999999997 999
Q ss_pred HhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcH-HHHHHH-----------HHhhh-cHHHHHHHHHHHHh
Q psy12000 339 LLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEK-SLMEYH-----------QKLED-SLEEQLCLASIHFL 405 (507)
Q Consensus 339 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~-----------~~l~~-~~~~~~~l~~~~~~ 405 (507)
++++...|.+...++.+ +......++.+.|..++.+....- .....+ ..+.. ....++.+......
T Consensus 368 ~rAi~~~P~s~~Lwl~~-a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 368 KLGQQCIPNSAVLAFSL-SEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHHHCTTCHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 99986555554444332 334445566666666655432210 000000 00000 00112222233333
Q ss_pred HhhHHHHHHHHHHHhhc-CCchhhhHHHHHhhcccccc-chhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHH
Q psy12000 406 RCHYQEAIDIYKRILLD-HKDLLALNVYGAMCYYKLDY-YDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQ 483 (507)
Q Consensus 406 ~~~~~~Ai~~~~~~l~~-~p~~~~~~~~la~~y~~~g~-~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~ 483 (507)
.|..+.|.++|.++++. .+....++...|...++.|+ .+.|..+|+.+++..|+++..+...+.....+++...|++.
T Consensus 447 ~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~l 526 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSL 526 (679)
T ss_dssp HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 47788999999999887 44445566666666666654 89999999999999999998876666655566778888888
Q ss_pred HHHHHHhCCC
Q psy12000 484 LKPILVSAGP 493 (507)
Q Consensus 484 ~~~~~~~~~~ 493 (507)
|...+...|+
T Consensus 527 feral~~~~~ 536 (679)
T 4e6h_A 527 FESSIDKISD 536 (679)
T ss_dssp HHHHTTTSSS
T ss_pred HHHHHHhcCC
Confidence 8888888774
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.3e-12 Score=106.42 Aligned_cols=100 Identities=10% Similarity=0.038 Sum_probs=59.3
Q ss_pred ChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHH
Q psy12000 39 PEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQE 118 (507)
Q Consensus 39 ~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~ 118 (507)
.++.+..+|.+++..|++++|+..++++....+. .+..+..+|.++...|++++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--------------------------~~~~~~~~a~~~~~~~~~~~ 56 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE--------------------------DARGYSNRAAALAKLMSFPE 56 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------------------------ChHHHHHHHHHHHHhcCHHH
Confidence 3455666666666666666666666554321111 11224556666666666666
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000 119 AIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 164 (507)
Q Consensus 119 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 164 (507)
|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++..+
T Consensus 57 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 57 AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 6666666666666666666666666666666666666666666666
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.40 E-value=1.9e-12 Score=106.04 Aligned_cols=117 Identities=19% Similarity=0.098 Sum_probs=77.4
Q ss_pred cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000 6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD 85 (507)
Q Consensus 6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (507)
....+.+|.+++..|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..++++....+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------------- 82 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT------------- 82 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-------------
Confidence 3445557777777777777777777777777777777777777777777777777766655321111
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC
Q psy12000 86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD 148 (507)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 148 (507)
.+..++.+|.++...|++++|+.+|++++..+|++..++..++.++..+|
T Consensus 83 -------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 83 -------------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred -------------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 11224556666777777777777777777777776666666776666655
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.39 E-value=1e-11 Score=105.94 Aligned_cols=126 Identities=13% Similarity=0.088 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL 181 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~ 181 (507)
.+..+|.+++..|++++|+..|++++..+|++..+++.+|.++...|++++|+..+++++..+|+++.++..+|.++...
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 37889999999999999999999999999999999999999999999999999999999999999999888889998999
Q ss_pred cChHHHHHhhHHHHHhhCCCCCCChhHhH--HHHHHHHHhhccHHHHHHHHHh
Q psy12000 182 FTSRAAENQLKPILVSILPPLIDVIPESR--LNLVIYHLKQEEHQEAFDLIKN 232 (507)
Q Consensus 182 ~~~~~A~~~l~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~l~~ 232 (507)
|++++|...+++++. ..|..+.++ +.++..+...|++++|+..+.+
T Consensus 95 ~~~~~A~~~~~~a~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 95 GKFRAALRDYETVVK-----VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp TCHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 999999988887653 233344555 3444457778888888877653
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.39 E-value=8.2e-12 Score=117.96 Aligned_cols=135 Identities=16% Similarity=0.044 Sum_probs=106.5
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhc
Q psy12000 10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPE------DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKL 83 (507)
Q Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~ 83 (507)
...+..++..|+|++|++.++++++..|... ..++.+|.++...|++++|+..++++........
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--------- 149 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--------- 149 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS---------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC---------
Confidence 3467889999999999999999999888755 2356789999999999999999988753211110
Q ss_pred CChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHH---HhCCch----hHHHHHHHHHHHhcCCHHHHHHH
Q psy12000 84 GDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL---LDHKDL----LALNVYGAMCYYKLDYYDVSQEQ 156 (507)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l---~~~p~~----~~~~~~la~~~~~~g~~~~A~~~ 156 (507)
+... ....+..+|.+|..+|++++|+.+|++++ ...|+. ..+++++|.+|..+|++++|+++
T Consensus 150 -~~~~----------~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~ 218 (293)
T 2qfc_A 150 -DVYQ----------NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp -CTTH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -chHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHH
Confidence 0000 01126689999999999999999999999 455653 26899999999999999999999
Q ss_pred HHHHHhcC
Q psy12000 157 VAMYLAQK 164 (507)
Q Consensus 157 ~~~~l~~~ 164 (507)
+++++...
T Consensus 219 ~~kal~~~ 226 (293)
T 2qfc_A 219 VNKAIEIS 226 (293)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998654
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.38 E-value=1.4e-11 Score=116.28 Aligned_cols=174 Identities=11% Similarity=0.031 Sum_probs=129.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL------ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC 176 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~ 176 (507)
+...+..+...|+|++|++.+++++...|... ..++.+|.++...|++++|+..+++++...+.....
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~------ 151 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV------ 151 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch------
Confidence 56788999999999999999999999877533 346678999999999999999999998765543210
Q ss_pred hhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccC
Q psy12000 177 NTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTG 256 (507)
Q Consensus 177 ~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~ 256 (507)
.....++.++|.+|..+|++++|+..+.+.
T Consensus 152 ---------------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~ka----------------------- 181 (293)
T 2qfc_A 152 ---------------------------YQNLYIENAIANIYAENGYLKKGIDLFEQI----------------------- 181 (293)
T ss_dssp ---------------------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------
T ss_pred ---------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------------
Confidence 001246788999999999999999888653
Q ss_pred cHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCC--C----chHHHHHHHHHHhhCC
Q psy12000 257 SREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTS--D----DSFNFNFAQAKCALGQ 330 (507)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~--~----~~~~~~lg~~~~~~g~ 330 (507)
+..++...... . ....++..+|.+|..+|+|++|+.+++++....++ + ..+++++|.+|..+|+
T Consensus 182 --------l~~~~~~~~~~-~-~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 251 (293)
T 2qfc_A 182 --------LKQLEALHDNE-E-FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp --------HHHHHHSCCCH-H-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC
T ss_pred --------HHHHHhcCccc-c-chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 11111111000 0 00123457899999999999999999988765432 1 3567889999999999
Q ss_pred HHHH-HHHHHhhc
Q psy12000 331 YKEA-EEMFLLVQ 342 (507)
Q Consensus 331 ~~~A-~~~~~~~~ 342 (507)
+++| ..+|++++
T Consensus 252 ~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 252 EEAEIEDAYKKAS 264 (293)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9999 77788875
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.38 E-value=2.9e-12 Score=104.29 Aligned_cols=117 Identities=18% Similarity=0.029 Sum_probs=73.3
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChh
Q psy12000 8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEK 87 (507)
Q Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (507)
..+.+|.+++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++....+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------------- 78 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA--------------- 78 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc---------------
Confidence 44456777777777777777777777777777777777777776666666666666554321110
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCH
Q psy12000 88 SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYY 150 (507)
Q Consensus 88 ~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 150 (507)
.+..++.+|.++...|++++|+..|++++..+|++..++..+|.++..+|++
T Consensus 79 -----------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 79 -----------YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred -----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 1112445666666666666666666666666666666666666666666554
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.37 E-value=4.2e-12 Score=108.73 Aligned_cols=112 Identities=8% Similarity=-0.049 Sum_probs=86.6
Q ss_pred chHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHH
Q psy12000 315 DSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLE 394 (507)
Q Consensus 315 ~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 394 (507)
...++.+|.+++..|++++|+..|++++..++.+...+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------------------------------------------ 48 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYL------------------------------------------ 48 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHH------------------------------------------
Confidence 35567788888888888888888888775554322111
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhh
Q psy12000 395 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN 470 (507)
Q Consensus 395 ~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~ 470 (507)
..++.+++..|++++|+..|++++..+|+++.+++.+|.+|.++|++++|+..|+++++++|+++.++..++..
T Consensus 49 --~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 49 --SNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp --HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred --HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 22345666678888888888888888899999999999999999999999999999999999999876655554
No 142
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.37 E-value=2.2e-10 Score=108.33 Aligned_cols=251 Identities=8% Similarity=0.018 Sum_probs=158.6
Q ss_pred hhcCHH-HHHHHHHHHhcCCCCChhhHHHHHHHHHhhcc----------HHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000 18 HLGQYK-QALGIYETLRHLPNPPEDTEFNIASCYFYLGM----------YLQANQILEKVPPSRAKTRLSFHLSHKLGDE 86 (507)
Q Consensus 18 ~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (507)
..|+++ +|+..+.+++..+|++..+|++.+.++..+|. +++++.++..+....+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P--------------- 105 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--------------- 105 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT---------------
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC---------------
Confidence 456666 79999999999999999999999999988776 3344444333321111
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHhh--cHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC-HHHHHHHHHHHHhc
Q psy12000 87 KSLMEYHQKLEDSLEEQLCLASIHFLRC--HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY-YDVSQEQVAMYLAQ 163 (507)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~ 163 (507)
++...+...+.++...| .+++++.++.+++..+|.+..++.+.+.+....|. ++++++.+.+++..
T Consensus 106 -----------Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 106 -----------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp -----------TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -----------CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 12233555666666666 37778888888888888777777777777777777 47777777777777
Q ss_pred CCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh---cCCCChHH
Q psy12000 164 KPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN---LEPSVPQE 240 (507)
Q Consensus 164 ~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~---~~~~~~~~ 240 (507)
+|.+..|++.++.+....+....+ .+.. -...+.++++++.+.+ ..|.+...
T Consensus 175 ~p~N~SAW~~R~~ll~~l~~~~~~------------------~~~~-------~~~~~~~~eEle~~~~ai~~~P~d~Sa 229 (331)
T 3dss_A 175 NFSNYSSWHYRSCLLPQLHPQPDS------------------GPQG-------RLPENVLLKELELVQNAFFTDPNDQSA 229 (331)
T ss_dssp CSCCHHHHHHHHHHHHHHSCCC-------------------------------CCCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred CCCCHHHHHHHHHHHHHhhhcccc------------------cccc-------ccchHHHHHHHHHHHHHHHhCCCCHHH
Confidence 887777776665554433211000 0000 0012557777777764 36777776
Q ss_pred HH-HHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHH
Q psy12000 241 YI-LKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNF 319 (507)
Q Consensus 241 ~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~ 319 (507)
+. .++.+....|... +. -...+.+++++++++.+.+..|++...+.
T Consensus 230 W~Y~r~ll~~~~~~~~-------------------------------~~--~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 230 WFYHRWLLGAGSGRCE-------------------------------LS--VEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp HHHHHHHHHSSSCGGG-------------------------------CC--HHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhccCccc-------------------------------cc--hHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 64 3333221111000 00 11245688999999999999998854333
Q ss_pred HHHHHH---HhhCCHHHHHHHHHhhcccCCCchhhh
Q psy12000 320 NFAQAK---CALGQYKEAEEMFLLVQNEGLKNDYVY 352 (507)
Q Consensus 320 ~lg~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~ 352 (507)
.++.+. ...|..+++..++.++++.+|.....|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y 312 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 312 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHH
Confidence 232221 235788999999999988887555444
No 143
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.36 E-value=6.1e-12 Score=118.84 Aligned_cols=134 Identities=15% Similarity=0.044 Sum_probs=104.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCCChhh------HHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDT------EFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD 85 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (507)
.+..++..|+|++|+..++++++..|..++. +..+|.++...|++++|+..++++........ +
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~----------~ 150 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI----------D 150 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS----------C
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc----------c
Confidence 4778899999999999999999988877652 33589999999999999999998753111110 0
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-------CCchhHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12000 86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD-------HKDLLALNVYGAMCYYKLDYYDVSQEQVA 158 (507)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 158 (507)
... ....+..+|.+|...|++++|+.+|++++.. .|....+++++|.+|..+|++++|+++++
T Consensus 151 ~~~----------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~ 220 (293)
T 3u3w_A 151 VYQ----------NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220 (293)
T ss_dssp TTH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 000 0012568999999999999999999999953 23445689999999999999999999999
Q ss_pred HHHhcCC
Q psy12000 159 MYLAQKP 165 (507)
Q Consensus 159 ~~l~~~p 165 (507)
+++...+
T Consensus 221 ~al~~~~ 227 (293)
T 3u3w_A 221 KAIEISC 227 (293)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9986543
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.36 E-value=4e-12 Score=104.06 Aligned_cols=118 Identities=12% Similarity=-0.049 Sum_probs=80.8
Q ss_pred CCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcH
Q psy12000 37 NPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHY 116 (507)
Q Consensus 37 p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~ 116 (507)
|.+...++.+|.+++..|++++|+..++++....+.. +..+..+|.++...|++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--------------------------~~~~~~la~~~~~~~~~ 66 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD--------------------------AKLYSNRAACYTKLLEF 66 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC--------------------------HHHHHHHHHHHTTTTCH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--------------------------HHHHHHHHHHHHHhccH
Confidence 4455677777777777777777777777664332211 11245677777777777
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000 117 QEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180 (507)
Q Consensus 117 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~ 180 (507)
++|+.+|++++..+|++..+++.+|.++..+|++++|+..+++++..+|++..++..++.++..
T Consensus 67 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 67 QLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777777766655555554443
No 145
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.36 E-value=1.4e-11 Score=100.53 Aligned_cols=70 Identities=13% Similarity=0.033 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCch---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDL---LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN 172 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~ 172 (507)
++.+|.++...|++++|+..|++++..+|++ +.+++.+|.++..+|++++|+..|++++..+|+++.+..
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 4456677777777888888888888888887 777888888888888888888888888888888876544
No 146
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.36 E-value=3.1e-12 Score=106.38 Aligned_cols=106 Identities=13% Similarity=0.053 Sum_probs=94.7
Q ss_pred HHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHH
Q psy12000 16 HFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQK 95 (507)
Q Consensus 16 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (507)
.-+.+.|++|++.|+++++.+|+++++|+++|.++..+++++.+....
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al-------------------------------- 59 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK-------------------------------- 59 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH--------------------------------
Confidence 346688999999999999999999999999999999999887665421
Q ss_pred HhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcC
Q psy12000 96 LEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD-----------YYDVSQEQVAMYLAQK 164 (507)
Q Consensus 96 l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~l~~~ 164 (507)
+.+++|+..|+++|+++|++.++++++|.+|..+| ++++|++.|++++.++
T Consensus 60 ------------------~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 60 ------------------QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp ------------------HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ------------------hHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 34899999999999999999999999999999885 8999999999999999
Q ss_pred CCcHHHH
Q psy12000 165 PTSRIAL 171 (507)
Q Consensus 165 p~~~~a~ 171 (507)
|++....
T Consensus 122 P~~~~y~ 128 (158)
T 1zu2_A 122 PDNTHYL 128 (158)
T ss_dssp TTCHHHH
T ss_pred CCCHHHH
Confidence 9998643
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.35 E-value=4.9e-12 Score=112.01 Aligned_cols=163 Identities=15% Similarity=0.017 Sum_probs=103.4
Q ss_pred HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccc---hHHHHHHhcCChhHH
Q psy12000 13 GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTR---LSFHLSHKLGDEKSL 89 (507)
Q Consensus 13 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 89 (507)
+.+.-..|++++|.+.++......+.....+..+|.+++..|++++|+..++++....+... .. ...... ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~---~~~ 86 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ-ILLDKK---KNI 86 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH-HHHHHH---HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh-hHHHHH---HHH
Confidence 34444556666666666555554555556666666666666666666666665532111000 00 000000 000
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 90 MEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 90 ~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
....+..+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++..+|++..
T Consensus 87 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 87 ---------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp ---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred ---------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 01125678889999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhhhhhhccChHHHH
Q psy12000 170 ALNLKACNTYKLFTSRAAE 188 (507)
Q Consensus 170 a~~~~a~~~~~~~~~~~A~ 188 (507)
+...++.+....++.+++.
T Consensus 158 ~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 158 IRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888877777666555
No 148
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.34 E-value=7.1e-11 Score=112.23 Aligned_cols=142 Identities=9% Similarity=-0.081 Sum_probs=118.9
Q ss_pred HHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhc-cHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHH
Q psy12000 16 HFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLG-MYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQ 94 (507)
Q Consensus 16 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (507)
....+..++|++.+++++..+|++..+|++.+.++..+| .+++++..+.++....+++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn--------------------- 122 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS--------------------- 122 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC---------------------
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc---------------------
Confidence 344556678999999999999999999999999999999 5999999988775443332
Q ss_pred HHhhcHHHHHHHHHHHHHh-h-cHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcC
Q psy12000 95 KLEDSLEEQLCLASIHFLR-C-HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYD--------VSQEQVAMYLAQK 164 (507)
Q Consensus 95 ~l~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~~l~~~ 164 (507)
...+...+.++... + +++++++++.+++..+|.+..++.+.+.+...+|.++ ++++.++++++.+
T Consensus 123 -----y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d 197 (349)
T 3q7a_A 123 -----YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD 197 (349)
T ss_dssp -----HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC
Confidence 12244556666666 6 8899999999999999999999999999999999988 9999999999999
Q ss_pred CCcHHHHHHHhhhhhhccC
Q psy12000 165 PTSRIALNLKACNTYKLFT 183 (507)
Q Consensus 165 p~~~~a~~~~a~~~~~~~~ 183 (507)
|.+..|++.++.+....+.
T Consensus 198 p~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 198 GRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp TTCHHHHHHHHHHHTTSTT
T ss_pred CCCHHHHHHHHHHHHhccc
Confidence 9999999888877666554
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.34 E-value=1.3e-11 Score=105.67 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL 181 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~ 181 (507)
.++.+|.+++..|+|++|+.+|++++..+|+++.+++++|.++..+|++++|+..|++++..+|++..++..+|.+++..
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 37789999999999999999999999999999999999999999999999999999999999999988877777777777
Q ss_pred cChHHHHHhhHHHH
Q psy12000 182 FTSRAAENQLKPIL 195 (507)
Q Consensus 182 ~~~~~A~~~l~~~~ 195 (507)
|++++|...+++++
T Consensus 93 g~~~~A~~~~~~al 106 (164)
T 3sz7_A 93 ADYKGAKEAYEKGI 106 (164)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 77777777666654
No 150
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.33 E-value=1.2e-08 Score=106.47 Aligned_cols=67 Identities=12% Similarity=-0.005 Sum_probs=54.0
Q ss_pred CccchhhHHHHHH--HhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhcc---HHHHHHHHHhCCCCc
Q psy12000 4 ADSLTDAWLGYCH--FHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGM---YLQANQILEKVPPSR 70 (507)
Q Consensus 4 ~~~~~~~~lg~~~--~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~eA~~~~~~~~~~~ 70 (507)
+|-+...|+..+- ...++++.|...|++++...|.....|...+..-...|+ ++.+..+|+++....
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~ 133 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE 133 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSS
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhc
Confidence 4556667754443 456899999999999999999999999999999999999 999999999987654
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.33 E-value=2.8e-12 Score=113.54 Aligned_cols=120 Identities=18% Similarity=0.042 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL----------------ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 166 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 166 (507)
+..+|..++..|+|++|+..|++++...|+++ .+++++|.++..+|++++|+..+++++..+|+
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 67899999999999999999999999998876 89999999999999999999999999999999
Q ss_pred cHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHH
Q psy12000 167 SRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAF 227 (507)
Q Consensus 167 ~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 227 (507)
+..++..+|.+++..|++++|...+++++. ..|..+.++..++.++...++++++.
T Consensus 121 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 121 NVKALYKLGVANMYFGFLEEAKENLYKAAS-----LNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHH-----HCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888888888888888888877653 23445667777777777766666654
No 152
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.32 E-value=2.7e-11 Score=98.49 Aligned_cols=117 Identities=17% Similarity=0.075 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL 181 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~ 181 (507)
.+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHh
Confidence 37789999999999999999999999999999999999999999999999999999999999999988888888888888
Q ss_pred cChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccH
Q psy12000 182 FTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEH 223 (507)
Q Consensus 182 ~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 223 (507)
|++++|...++++.+ ..|..+.++..++.++...|++
T Consensus 94 ~~~~~A~~~~~~~~~-----~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 94 NKHVEAVAYYKKALE-----LDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TCHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHh-----cCccchHHHHHHHHHHHHHhcC
Confidence 888888887777643 2344456667777777666653
No 153
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.31 E-value=9.5e-13 Score=132.54 Aligned_cols=159 Identities=16% Similarity=0.070 Sum_probs=121.5
Q ss_pred hhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHh
Q psy12000 18 HLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLE 97 (507)
Q Consensus 18 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 97 (507)
.++++++|+..|+.+++..|.....+..+|.+++..|+|++|+..|+++....+.... . .... ...+.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~-~~~~----~~~~~ 313 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG-------L-SEKE----SKASE 313 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS-------C-CHHH----HHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc-------C-ChHH----HHHHH
Confidence 4567778888888888888888899999999999999999999999987542221100 0 0000 00111
Q ss_pred h-cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000 98 D-SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC 176 (507)
Q Consensus 98 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~ 176 (507)
. ....++++|.++..+|+|++|+..|++++..+|++..+++++|.+|..+|++++|+..|+++++.+|++..++..++.
T Consensus 314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1 123378999999999999999999999999999999999999999999999999999999999999999877776666
Q ss_pred hhhhccChHHHH
Q psy12000 177 NTYKLFTSRAAE 188 (507)
Q Consensus 177 ~~~~~~~~~~A~ 188 (507)
++..+++++++.
T Consensus 394 ~~~~~~~~~~a~ 405 (457)
T 1kt0_A 394 CQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666555554
No 154
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.30 E-value=6.2e-12 Score=101.72 Aligned_cols=100 Identities=9% Similarity=-0.061 Sum_probs=88.4
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCC
Q psy12000 397 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT 476 (507)
Q Consensus 397 ~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~ 476 (507)
..+|..++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..+|.++..+++
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 44566777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCcc
Q psy12000 477 SRAAENQLKPILVSAGPRVR 496 (507)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~ 496 (507)
.+.|...|++.++..|.+..
T Consensus 101 ~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999998743
No 155
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.30 E-value=1.1e-12 Score=132.66 Aligned_cols=126 Identities=12% Similarity=0.016 Sum_probs=107.9
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE 86 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (507)
.....+|.+++..|+|++|++.|+++++.+|+++.++..+|.++..+|++++|+..++++....+..
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------------- 73 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY------------- 73 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------------
Confidence 3455689999999999999999999999999999999999999999999999999998875433221
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHH--HHhcCCHHHHHHHHH
Q psy12000 87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMC--YYKLDYYDVSQEQVA 158 (507)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~ 158 (507)
+..++.+|.+|..+|++++|++.|+++++.+|++..++..++.+ +...|++++|++.++
T Consensus 74 -------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 74 -------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp -------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 22367899999999999999999999999999999999999998 889999999999998
No 156
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.30 E-value=7.9e-12 Score=104.15 Aligned_cols=103 Identities=17% Similarity=0.033 Sum_probs=94.2
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHhhcCCc-------hhh-----hHHHHHhhccccccchhHHHHHHHHHhc-------C
Q psy12000 397 LCLASIHFLRCHYQEAIDIYKRILLDHKD-------LLA-----LNVYGAMCYYKLDYYDVSQEQVAMYLAQ-------K 457 (507)
Q Consensus 397 ~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~-------~~~-----~~~~la~~y~~~g~~~~A~~~~~~~l~~-------~ 457 (507)
...|..++..|+|++|+..|++++..+|+ +.. +++++|.++.++|++++|+..++++|++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 45677888889999999999999999998 333 8899999999999999999999999999 9
Q ss_pred CCchhhh----hHHHhhhhhcCChHHHHHHHHHHHHhCCCCccCCC
Q psy12000 458 PTSRIAL----NLKACNTYKLFTSRAAENQLKPILVSAGPRVRFPP 499 (507)
Q Consensus 458 P~~~~a~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (507)
|+++.++ +.+|..+..++..+.|...|++.++..|++...-+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 9999999 99999999999999999999999999999854443
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.29 E-value=3.5e-11 Score=96.88 Aligned_cols=72 Identities=22% Similarity=0.205 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA 175 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a 175 (507)
..+|.++...|++++|+.+|++++...|+++.++..+|.++...|++++|+..+++++..+|+++.+...++
T Consensus 47 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 118 (125)
T 1na0_A 47 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 344555555555555555555555555555555555666666666666666666666655555555444333
No 158
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=4.1e-11 Score=123.28 Aligned_cols=204 Identities=9% Similarity=-0.031 Sum_probs=134.6
Q ss_pred Hhhc-HHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000 112 LRCH-YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY----------YDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180 (507)
Q Consensus 112 ~~g~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~ 180 (507)
..|+ .++|++.+.+++..+|++..+|+..+.+...+|+ ++++++.+++++..+|++..+++.++.+
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~--- 116 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL--- 116 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH---
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH---
Confidence 3344 4678999999999999999999999999998888 7888888888888888777655433322
Q ss_pred ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHH
Q psy12000 181 LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREM 260 (507)
Q Consensus 181 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 260 (507)
T Consensus 117 -------------------------------------------------------------------------------- 116 (567)
T 1dce_A 117 -------------------------------------------------------------------------------- 116 (567)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhc--CHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhC-CHHHHHHH
Q psy12000 261 VKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLR--SFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALG-QYKEAEEM 337 (507)
Q Consensus 261 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~ 337 (507)
+...+ ++++++++++++.+.+|.+..++.+++.++...| .+++++++
T Consensus 117 ------------------------------l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 117 ------------------------------LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp ------------------------------HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred ------------------------------HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHH
Confidence 22223 3455556666666666665555555666666666 56666666
Q ss_pred HHhhcccCCCchhhh--hhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHH
Q psy12000 338 FLLVQNEGLKNDYVY--ISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDI 415 (507)
Q Consensus 338 ~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~ 415 (507)
+.++++.++.+...| .+. +..++....++ .. . .....+.+++|+++
T Consensus 167 ~~~~I~~~p~n~saW~~r~~----------------ll~~l~~~~~~-------~~----~-----~~~~~~~~~eel~~ 214 (567)
T 1dce_A 167 TDSLITRNFSNYSSWHYRSC----------------LLPQLHPQPDS-------GP----Q-----GRLPENVLLKELEL 214 (567)
T ss_dssp HHTTTTTTCCCHHHHHHHHH----------------HHHHHSCCCCS-------SS----C-----CSSCHHHHHHHHHH
T ss_pred HHHHHHHCCCCccHHHHHHH----------------HHHhhcccccc-------cc----c-----ccccHHHHHHHHHH
Confidence 666655554433222 111 00000000000 00 0 00012568999999
Q ss_pred HHHHhhcCCchhhhHHHHHhhccccccchh------------HHHHHHHHHhcCCCc
Q psy12000 416 YKRILLDHKDLLALNVYGAMCYYKLDYYDV------------SQEQVAMYLAQKPTS 460 (507)
Q Consensus 416 ~~~~l~~~p~~~~~~~~la~~y~~~g~~~~------------A~~~~~~~l~~~P~~ 460 (507)
+++++..+|++..+++++++++.+.|++++ |+..|.++++++|+.
T Consensus 215 ~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 215 VQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp HHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred HHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 999999999999999999999999999777 666677788888774
No 159
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.29 E-value=2.4e-11 Score=103.65 Aligned_cols=93 Identities=24% Similarity=0.303 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHh------------------CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLD------------------HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 164 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 164 (507)
+..+|..++..|+|++|+..|++++.. +|.+..+++++|.|+..+|++++|+..+++++..+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 678999999999999999999999999 77788999999999999999999999999999999
Q ss_pred CCcHHHHHHHhhhhhhccChHHHHHhhHHHH
Q psy12000 165 PTSRIALNLKACNTYKLFTSRAAENQLKPIL 195 (507)
Q Consensus 165 p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~ 195 (507)
|+++.++..+|.+++.+|++++|...+++++
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 9999888877777777777777777776654
No 160
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.29 E-value=3.8e-10 Score=107.20 Aligned_cols=234 Identities=8% Similarity=-0.068 Sum_probs=170.9
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc-c-
Q psy12000 106 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD-YYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL-F- 182 (507)
Q Consensus 106 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~-~- 182 (507)
...+....+..++|++++.++|..+|++..+++..+.+...+| .+++++..++.++..+|++..+++.++.+.... +
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCC
Confidence 3345555667789999999999999999999999999999999 599999999999999999999999998888777 6
Q ss_pred ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHH--------HHHHHHHh---cCCCChHHHHHHHHHHHHh
Q psy12000 183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQ--------EAFDLIKN---LEPSVPQEYILKAVVQVTI 251 (507)
Q Consensus 183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~l~~---~~~~~~~~~~~~~~~~~~~ 251 (507)
+.+++...+.+++ ...+.+..+|...+.+....|.++ ++++.+.+ .+|.+...+..++.+...+
T Consensus 140 ~~~~EL~~~~k~L-----~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 140 DPVSEIEYIHGSL-----LPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp CCHHHHHHHHHHT-----SSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 7788887777653 456777889999999988888887 88887764 4788888888888888777
Q ss_pred hhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCH--------------------HHHHHHHHHhhhhc
Q psy12000 252 GQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSF--------------------KDVILYLSSIKSYY 311 (507)
Q Consensus 252 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--------------------~~Ai~~~~~~~~~~ 311 (507)
+........+++++++++.... ..|+...++..+..++...|+- .+..+.........
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred cccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 7543344556677776654322 1344455666666666665543 22222222222221
Q ss_pred ------CCCchHHHHHHHHHHhhCCHHHHHHHHHhhc-ccCC
Q psy12000 312 ------TSDDSFNFNFAQAKCALGQYKEAEEMFLLVQ-NEGL 346 (507)
Q Consensus 312 ------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~-~~~~ 346 (507)
+..+.++..++.+|...|+.++|.+.|+.+. +.+|
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence 2344555668999999999999999998875 4444
No 161
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.29 E-value=6.7e-12 Score=107.18 Aligned_cols=123 Identities=14% Similarity=0.054 Sum_probs=95.4
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHHhcC--------CCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHH
Q psy12000 8 TDAWLGYCHFHLGQYKQALGIYETLRHL--------PNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHL 79 (507)
Q Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 79 (507)
.....|..++..|+|++|+..|+++++. +|.+++. ..+. +.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~------------------~~~~------~~------- 61 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW------------------VELD------RK------- 61 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH------------------HHHH------HT-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH------------------HHHH------HH-------
Confidence 4456899999999999999999999886 3443321 0000 00
Q ss_pred HHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12000 80 SHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAM 159 (507)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 159 (507)
.+..+.++|.++...|+|++|+..+++++..+|+++.+++.+|.++..+|++++|+..|++
T Consensus 62 -------------------~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 122 (162)
T 3rkv_A 62 -------------------NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKL 122 (162)
T ss_dssp -------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 0112667899999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcH-HHHHHHhhhhhh
Q psy12000 160 YLAQKPTSR-IALNLKACNTYK 180 (507)
Q Consensus 160 ~l~~~p~~~-~a~~~~a~~~~~ 180 (507)
++..+|+++ .....++.+...
T Consensus 123 al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 123 LLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHH
Confidence 999999998 444444444433
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.28 E-value=2.3e-11 Score=98.34 Aligned_cols=90 Identities=8% Similarity=-0.077 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
.+.+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 67889999999999999999999999999999999999999999999999999999999999998865544444444444
Q ss_pred ChHHHHHhhH
Q psy12000 183 TSRAAENQLK 192 (507)
Q Consensus 183 ~~~~A~~~l~ 192 (507)
++++|...++
T Consensus 100 ~~~~A~~~~~ 109 (121)
T 1hxi_A 100 NANAALASLR 109 (121)
T ss_dssp HHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4444443333
No 163
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.28 E-value=2.8e-11 Score=97.49 Aligned_cols=116 Identities=19% Similarity=0.229 Sum_probs=101.0
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE 86 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (507)
.+.+.+|.++...|++++|+..|+++++..|.++.+++.+|.++...|++++|+..++++....+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------------- 75 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-------------- 75 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--------------
Confidence 456678999999999999999999999999999999999999999999999999999876421111
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC
Q psy12000 87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD 148 (507)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 148 (507)
.+..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 76 ------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 76 ------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred ------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 12235688999999999999999999999999999999999999887654
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.28 E-value=1.2e-11 Score=102.04 Aligned_cols=63 Identities=11% Similarity=0.078 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 166 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 166 (507)
..+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++..+|+
T Consensus 47 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 47 TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 344455555555555555555555556665556666666666666666666666666555554
No 165
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.28 E-value=1.3e-10 Score=102.60 Aligned_cols=164 Identities=12% Similarity=0.041 Sum_probs=116.6
Q ss_pred HHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHH
Q psy12000 16 HFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQK 95 (507)
Q Consensus 16 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (507)
.+..|+|++|.+.++.+....+....++..+|.++...|++++|+..++++.. +....+....
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----------~~~~~~~~~~------- 64 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQ----------QAQKSGDHTA------- 64 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------HHHTTCCHHH-------
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH----------HHHHcCCcHH-------
Confidence 46789999999976666553336678999999999999999999999987632 1111111100
Q ss_pred HhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CC----chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000 96 LEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD---HK----DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 96 l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 168 (507)
....+..+|.++...|++++|+..|++++.. .| ....++.++|.++..+|++++|+..+++++...+...
T Consensus 65 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 141 (203)
T 3gw4_A 65 ---EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD 141 (203)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 0122678999999999999999999999988 33 3456789999999999999999999999875422111
Q ss_pred HHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000 169 IALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN 232 (507)
Q Consensus 169 ~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~ 232 (507)
.. .....++.++|.++...|++++|...+.+
T Consensus 142 ~~---------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 142 DQ---------------------------------VAIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp CH---------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ch---------------------------------HHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 00 00123457788888888999888877764
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.28 E-value=1.4e-11 Score=97.31 Aligned_cols=107 Identities=12% Similarity=0.039 Sum_probs=81.9
Q ss_pred CCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhc
Q psy12000 36 PNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCH 115 (507)
Q Consensus 36 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~ 115 (507)
+|+++.+++.+|.+++..|++++|+..++++....+. .+..+..+|.++...|+
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--------------------------~~~~~~~~a~~~~~~~~ 55 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE--------------------------ESKYWLMKGKALYNLER 55 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC--------------------------CHHHHHHHHHHHHHTTC
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--------------------------CHHHHHHHHHHHHHccC
Confidence 4666667777777777777777777776655321111 01124567888888888
Q ss_pred HHHHHHHHHHHHHhCCc--hhHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCcH
Q psy12000 116 YQEAIDIYKRILLDHKD--LLALNVYGAMCYYKL-DYYDVSQEQVAMYLAQKPTSR 168 (507)
Q Consensus 116 ~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~ 168 (507)
+++|+..|++++..+|+ +..+++.+|.++..+ |++++|++.+++++..+|.++
T Consensus 56 ~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 56 YEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 89999999999999999 899999999999999 999999999999999888753
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.27 E-value=9.7e-11 Score=96.50 Aligned_cols=96 Identities=17% Similarity=0.126 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhh
Q psy12000 100 LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY 179 (507)
Q Consensus 100 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~ 179 (507)
+..++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..+++++..+|+++.++..+|.++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 34478899999999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred hccChHHHHHhhHHHH
Q psy12000 180 KLFTSRAAENQLKPIL 195 (507)
Q Consensus 180 ~~~~~~~A~~~l~~~~ 195 (507)
..|++++|...+++++
T Consensus 89 ~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 89 EMESYDEAIANLQRAY 104 (137)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 8888888888887764
No 168
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.27 E-value=2.5e-11 Score=96.72 Aligned_cols=109 Identities=14% Similarity=-0.020 Sum_probs=64.4
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE 86 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (507)
...+.+|.+++..|++++|+..|++++..+|.++.++..+|.++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------------------------------- 51 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK--------------------------------- 51 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh---------------------------------
Confidence 34455667777777777777777777766666655555555555444
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000 87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 166 (507)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 166 (507)
|++++|+..|++++..+|+++.+++.+|.++...|++++|++.+++++..+|+
T Consensus 52 ---------------------------~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 52 ---------------------------GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred ---------------------------ccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 45555555555555555555555555555665666666666666655555555
Q ss_pred cHHHHHHHh
Q psy12000 167 SRIALNLKA 175 (507)
Q Consensus 167 ~~~a~~~~a 175 (507)
++.++..++
T Consensus 105 ~~~~~~~l~ 113 (118)
T 1elw_A 105 NPQLKEGLQ 113 (118)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 555444433
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.26 E-value=1.7e-10 Score=115.14 Aligned_cols=208 Identities=13% Similarity=0.079 Sum_probs=135.3
Q ss_pred CccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChh-----------------hHHHHHHHHHhhccHHHHHHHHHhC
Q psy12000 4 ADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPED-----------------TEFNIASCYFYLGMYLQANQILEKV 66 (507)
Q Consensus 4 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----------------~~~~la~~~~~~g~~~eA~~~~~~~ 66 (507)
+.+.+.+.-|..+...|+|++|++.|.++++..|...+ +...+|.+|...|++++|+..+.++
T Consensus 2 s~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~ 81 (434)
T 4b4t_Q 2 SLPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHS 81 (434)
T ss_dssp CSTTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34566778899999999999999999999999887543 4678999999999999999998876
Q ss_pred CCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC------chhHHHHHH
Q psy12000 67 PPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK------DLLALNVYG 140 (507)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~l 140 (507)
...... ..+... . ......+|.++...|++++|+.++++++...+ ....++..+
T Consensus 82 ~~~~~~----------~~~~~~-~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (434)
T 4b4t_Q 82 TEYMMQ----------FAKSKT-V---------KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKL 141 (434)
T ss_dssp HHHHHT----------SCHHHH-H---------HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHH
T ss_pred HHHHHH----------ccchHH-H---------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 321000 000000 0 00134566777777888888888888776543 235677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc------CCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHh--hCCCCCCChhHhHHH
Q psy12000 141 AMCYYKLDYYDVSQEQVAMYLAQ------KPTSRIALNLKACNTYKLFTSRAAENQLKPILVS--ILPPLIDVIPESRLN 212 (507)
Q Consensus 141 a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~--~~~~~~~~~~~~~~~ 212 (507)
|.+|...|+|++|+..+++++.. .|....++...+.++...|++++|...++++... ............+..
T Consensus 142 a~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 221 (434)
T 4b4t_Q 142 ATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLM 221 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Confidence 88888888888888888877643 2222334555566666666666666666554320 000000011234556
Q ss_pred HHHHHHhhccHHHHHHHHH
Q psy12000 213 LVIYHLKQEEHQEAFDLIK 231 (507)
Q Consensus 213 l~~~~~~~~~~~~A~~~l~ 231 (507)
+|.++...|+|++|...+.
T Consensus 222 ~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 222 SGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp HHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 6777777777777766654
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.2e-10 Score=97.14 Aligned_cols=120 Identities=11% Similarity=-0.028 Sum_probs=96.9
Q ss_pred CCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhh
Q psy12000 35 LPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRC 114 (507)
Q Consensus 35 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g 114 (507)
..|.+...++.+|.+++..|++++|+..++++....+.... .+..+..+|.++...|
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------------~~~~~~~~a~~~~~~~ 79 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD-----------------------QAVLHRNRAACHLKLE 79 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH-----------------------HHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH-----------------------HHHHHHHHHHHHHHHc
Confidence 34667778888888888888888888888877543332100 0122667899999999
Q ss_pred cHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhh
Q psy12000 115 HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN 177 (507)
Q Consensus 115 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~ 177 (507)
++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++..+|++..+...++.+
T Consensus 80 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 80 DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp CHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998766554443
No 171
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.25 E-value=2.1e-10 Score=91.23 Aligned_cols=94 Identities=16% Similarity=0.042 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL 181 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~ 181 (507)
.++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999887777777777777
Q ss_pred cChHHHHHhhHHHH
Q psy12000 182 FTSRAAENQLKPIL 195 (507)
Q Consensus 182 ~~~~~A~~~l~~~~ 195 (507)
|++++|...++.+.
T Consensus 86 ~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 86 NRFEEAKRTYEEGL 99 (118)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 77777766666543
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.24 E-value=2.6e-10 Score=113.74 Aligned_cols=207 Identities=12% Similarity=0.028 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL-----------------ALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 164 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 164 (507)
..+..|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|++++.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 356678888999999999999999999887532 367899999999999999999999988765
Q ss_pred CCcHH------HHHHHhhhhhhccChHHHHHhhHHHHHhhC-CCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCC
Q psy12000 165 PTSRI------ALNLKACNTYKLFTSRAAENQLKPILVSIL-PPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSV 237 (507)
Q Consensus 165 p~~~~------a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~ 237 (507)
+.... ....++.++...|+++.|...++......- .........++.++|.+|...|+|++|...+.++..
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~-- 163 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR-- 163 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH--
Confidence 54432 234456666677888888888877643110 112233456778899999999999999988865310
Q ss_pred hHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhc---CCC
Q psy12000 238 PQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYY---TSD 314 (507)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~---~~~ 314 (507)
... .....+.....+..++.+|...|+|++|..+++++.... +++
T Consensus 164 ------------~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 211 (434)
T 4b4t_Q 164 ------------EFK--------------------KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP 211 (434)
T ss_dssp ------------HHT--------------------TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred ------------HHH--------------------hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc
Confidence 000 000011112223457899999999999999999887543 222
Q ss_pred ----chHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000 315 ----DSFNFNFAQAKCALGQYKEAEEMFLLVQ 342 (507)
Q Consensus 315 ----~~~~~~lg~~~~~~g~~~~A~~~~~~~~ 342 (507)
..++..+|.++...|+|++|..+|.+++
T Consensus 212 ~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 212 TQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1345667899999999999999998875
No 173
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.24 E-value=1.6e-11 Score=102.02 Aligned_cols=109 Identities=13% Similarity=0.061 Sum_probs=90.0
Q ss_pred HhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHH
Q psy12000 292 FLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFH 371 (507)
Q Consensus 292 ~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 371 (507)
.+.++|++|+..++.+...+|++..+++++|.++..+|+++.+....
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al--------------------------------- 59 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK--------------------------------- 59 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH---------------------------------
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH---------------------------------
Confidence 34567888888888888888888888888888888887665444321
Q ss_pred HHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccc----------
Q psy12000 372 LSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD---------- 441 (507)
Q Consensus 372 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g---------- 441 (507)
+.+++||..|+++++.+|+...+++++|.+|..+|
T Consensus 60 -----------------------------------~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~ 104 (158)
T 1zu2_A 60 -----------------------------------QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAK 104 (158)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred -----------------------------------hHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhh
Confidence 23788999999999999999999999999999885
Q ss_pred -cchhHHHHHHHHHhcCCCchhhhhHHH
Q psy12000 442 -YYDVSQEQVAMYLAQKPTSRIALNLKA 468 (507)
Q Consensus 442 -~~~~A~~~~~~~l~~~P~~~~a~~~~~ 468 (507)
++++|+.+|+++++++|++....+.+.
T Consensus 105 g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 105 HNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 899999999999999999987655443
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.23 E-value=5.8e-12 Score=127.34 Aligned_cols=134 Identities=12% Similarity=0.034 Sum_probs=111.1
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchh
Q psy12000 286 CMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAK 365 (507)
Q Consensus 286 ~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 365 (507)
.+|.++...|+|++|+.+++++.+..|++..+++++|.+|..+|++++|++.|++++..++.+...+
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~------------- 77 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY------------- 77 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHH-------------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH-------------
Confidence 4678899999999999999999999999998999999999999999999999999987665332111
Q ss_pred hhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhh--ccccccc
Q psy12000 366 TRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMC--YYKLDYY 443 (507)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~--y~~~g~~ 443 (507)
..+|.++...|++++|+..|+++++.+|++..+...++.+ +.++|++
T Consensus 78 -------------------------------~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~ 126 (477)
T 1wao_1 78 -------------------------------YRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 126 (477)
T ss_dssp -------------------------------HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2345577778999999999999999999999999999988 9999999
Q ss_pred hhHHHHHH-----------HHHhcCCCchhh
Q psy12000 444 DVSQEQVA-----------MYLAQKPTSRIA 463 (507)
Q Consensus 444 ~~A~~~~~-----------~~l~~~P~~~~a 463 (507)
++|++.++ +++...|+...+
T Consensus 127 ~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 127 ERAIAGDEHKRSVVDSLDIESMTIEDEYSGP 157 (477)
T ss_dssp CCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred HHHhccccccchhHhhhhhhhcccccccccc
Confidence 99999999 888888876544
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.23 E-value=6.5e-11 Score=93.38 Aligned_cols=107 Identities=12% Similarity=0.051 Sum_probs=80.7
Q ss_pred cCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhh
Q psy12000 311 YTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLE 390 (507)
Q Consensus 311 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~ 390 (507)
+|++..+++.+|.++...|++++|+..|++++...+.+...+
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-------------------------------------- 43 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYW-------------------------------------- 43 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHH--------------------------------------
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHH--------------------------------------
Confidence 456666777788888888888888888888765443221111
Q ss_pred hcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCc--hhhhHHHHHhhcccc-ccchhHHHHHHHHHhcCCCch
Q psy12000 391 DSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD--LLALNVYGAMCYYKL-DYYDVSQEQVAMYLAQKPTSR 461 (507)
Q Consensus 391 ~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~--~~~~~~~la~~y~~~-g~~~~A~~~~~~~l~~~P~~~ 461 (507)
..++.+++..|++++|+..|+++++..|+ ...++..+|.+|.++ |++++|++.++.+++..|+++
T Consensus 44 ------~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 44 ------LMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred ------HHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 22344666678888888888888888888 888888888888888 899999999998888888765
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.23 E-value=1.9e-10 Score=93.59 Aligned_cols=92 Identities=14% Similarity=0.143 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHhh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL---ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS---RIALNLKAC 176 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~~a~ 176 (507)
++.+|.+++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.++..+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 57789999999999999999999999999988 799999999999999999999999999999988 444555555
Q ss_pred hhhhccChHHHHHhhHHH
Q psy12000 177 NTYKLFTSRAAENQLKPI 194 (507)
Q Consensus 177 ~~~~~~~~~~A~~~l~~~ 194 (507)
+++..|++++|...++.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 555555555555444443
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.22 E-value=9.4e-11 Score=117.92 Aligned_cols=123 Identities=20% Similarity=0.183 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch---------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDL---------------LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 166 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 166 (507)
.+..+|.+++.+|+|++|+..|++++..+|++ ..+++++|.|+.++|++++|+..|++++..+|+
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 37789999999999999999999999999988 689999999999999999999999999999999
Q ss_pred cHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHH
Q psy12000 167 SRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDL 229 (507)
Q Consensus 167 ~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 229 (507)
+..+++.+|.+++.+|++++|...|++++ ...|..+.++.+++.++...+++++|...
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al-----~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVL-----EVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----TTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875 35566778899999999999999988653
No 178
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=9e-11 Score=97.87 Aligned_cols=115 Identities=16% Similarity=0.011 Sum_probs=98.1
Q ss_pred cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHh
Q psy12000 6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPP---EDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHK 82 (507)
Q Consensus 6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~ 82 (507)
....+.+|.+++..|+|++|+..|+++++.+|++ ..+++.+|.++...|++++|+..++++....+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------- 97 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG---------- 97 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC----------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc----------
Confidence 3455668999999999999999999999999997 789999999999999999999999876432111
Q ss_pred cCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh
Q psy12000 83 LGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK 146 (507)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 146 (507)
.+..++.+|.++...|++++|+.+|++++..+|++..++..++.+...
T Consensus 98 ----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 98 ----------------DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp ----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred ----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 122367899999999999999999999999999999998888876544
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.19 E-value=5e-11 Score=100.75 Aligned_cols=139 Identities=19% Similarity=0.134 Sum_probs=109.2
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHH
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPE------DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLS 80 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~ 80 (507)
.+...+|.+++..|++++|+..|+++++..|... .++..+|.++...|++++|+..++++.....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--------- 80 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR--------- 80 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------
Confidence 3456789999999999999999999998765433 4788999999999999999999987642110
Q ss_pred HhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC------chhHHHHHHHHHHHhcCCHHHHH
Q psy12000 81 HKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK------DLLALNVYGAMCYYKLDYYDVSQ 154 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~ 154 (507)
..++... ....+..+|.++...|++++|+.++++++...+ ....++..+|.++...|++++|+
T Consensus 81 -~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 149 (164)
T 3ro3_A 81 -QLKDRAV----------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 149 (164)
T ss_dssp -HTTCHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred -HhCCcHH----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHH
Confidence 1101000 012267899999999999999999999998743 23567889999999999999999
Q ss_pred HHHHHHHhcCC
Q psy12000 155 EQVAMYLAQKP 165 (507)
Q Consensus 155 ~~~~~~l~~~p 165 (507)
+.+++++....
T Consensus 150 ~~~~~a~~~~~ 160 (164)
T 3ro3_A 150 HFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999886543
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.19 E-value=5.6e-12 Score=121.63 Aligned_cols=145 Identities=13% Similarity=0.077 Sum_probs=92.0
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChh
Q psy12000 8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEK 87 (507)
Q Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (507)
....+|.+++..|+|++|+..|+++++..|.+. .+...|+++++...+..
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~~---------------------- 230 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVKN---------------------- 230 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHHT----------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHHH----------------------
Confidence 345678888899999999999999888888654 13345566655543311
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12000 88 SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 167 (507)
Q Consensus 88 ~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 167 (507)
..++++|.++...|+|++|+..|++++..+|++..+++++|.++..+|++++|+..|++++..+|++
T Consensus 231 -------------~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~ 297 (338)
T 2if4_A 231 -------------PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297 (338)
T ss_dssp -------------HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred -------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 1257899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhh-hccChHHHHHhhHHHH
Q psy12000 168 RIALNLKACNTY-KLFTSRAAENQLKPIL 195 (507)
Q Consensus 168 ~~a~~~~a~~~~-~~~~~~~A~~~l~~~~ 195 (507)
..+...++.+.. ..+..+.+...+.+++
T Consensus 298 ~~a~~~L~~l~~~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 298 KAIRRELRALAEQEKALYQKQKEMYKGIF 326 (338)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 988777776633 3445667777777654
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.17 E-value=4.8e-11 Score=95.76 Aligned_cols=70 Identities=21% Similarity=0.232 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN 172 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~ 172 (507)
++.+|.++...|++++|+..|++++..+|+++.+++++|.++..+|++++|+..+++++..+|+++....
T Consensus 30 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 30 YLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999986543
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.17 E-value=8.6e-11 Score=114.57 Aligned_cols=88 Identities=14% Similarity=0.046 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 182 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~ 182 (507)
+.++|.++..+|++++|+.+|++++..+|+++.+++.+|.++..+|++++|++.|+++++.+|++..+...++.+....+
T Consensus 276 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 276 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 66788899999999999999999999999999999999999999999999999999999999999888888888877777
Q ss_pred ChHHHHHh
Q psy12000 183 TSRAAENQ 190 (507)
Q Consensus 183 ~~~~A~~~ 190 (507)
+.+++...
T Consensus 356 ~~~~a~k~ 363 (370)
T 1ihg_A 356 AQKDKEKA 363 (370)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 77766543
No 183
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.16 E-value=7.1e-10 Score=97.86 Aligned_cols=166 Identities=10% Similarity=0.013 Sum_probs=93.3
Q ss_pred HHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHh
Q psy12000 111 FLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQ 190 (507)
Q Consensus 111 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~ 190 (507)
+..|++++|...++.+....+....++..+|.++...|++++|+..+++++.......
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------- 60 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG---------------------- 60 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC----------------------
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC----------------------
Confidence 4578888888866555443336778888888888888999999888888875321100
Q ss_pred hHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHH
Q psy12000 191 LKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQL 270 (507)
Q Consensus 191 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 270 (507)
..+....++.++|.++...|++++|+..+.+.... ....++ . ....+
T Consensus 61 -----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----------~~~~~~---~--~~~~~------ 107 (203)
T 3gw4_A 61 -----------DHTAEHRALHQVGMVERMAGNWDAARRCFLEEREL-----------LASLPE---D--PLAAS------ 107 (203)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HHHSCC---C--HHHHH------
T ss_pred -----------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------HHHcCc---c--HHHHH------
Confidence 00112234556666666777777776666542100 000000 0 00000
Q ss_pred hCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcC--CCc----hHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000 271 VGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYT--SDD----SFNFNFAQAKCALGQYKEAEEMFLLVQ 342 (507)
Q Consensus 271 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~--~~~----~~~~~lg~~~~~~g~~~~A~~~~~~~~ 342 (507)
.++..+|.++...|++++|+.+++++....+ .++ .++.++|.++..+|++++|+.++++++
T Consensus 108 -----------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 108 -----------ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp -----------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 0122466777777777777777766654321 111 224567777777777777777777765
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.16 E-value=4.1e-10 Score=109.74 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHH----------------hCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILL----------------DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP 165 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 165 (507)
.+..+|..++..|+|++|+..|++++. .+|....++.++|.|+.++|++++|++.+++++..+|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 377899999999999999999999998 7788889999999999999999999999999999999
Q ss_pred CcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHH
Q psy12000 166 TSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDL 229 (507)
Q Consensus 166 ~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 229 (507)
++..+++.+|.+++.+|++++|...++++++ ..|..+.++..++.++...++++++...
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~-----l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQE-----IAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888753 3455667888888888888888877543
No 185
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.15 E-value=4.3e-10 Score=91.24 Aligned_cols=123 Identities=20% Similarity=0.254 Sum_probs=97.4
Q ss_pred cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000 6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD 85 (507)
Q Consensus 6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (507)
....+.+|.+++..|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..++++....+... ..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~ 74 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR---------ED 74 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST---------TC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc---------hh
Confidence 345677999999999999999999999999999999999999999999999999999987643211100 00
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC
Q psy12000 86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD 148 (507)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 148 (507)
.. ..+..++.+|.++...|++++|+..|++++...| ++.+...++.+....+
T Consensus 75 ~~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 75 YR----------QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HH----------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 00 0022367889999999999999999999999998 4777777777766544
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.14 E-value=3.7e-10 Score=116.17 Aligned_cols=156 Identities=10% Similarity=-0.033 Sum_probs=131.6
Q ss_pred cccchhhhhHHHHHHHhhcC----------HHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhC--CHHHHHHHHHhhccc
Q psy12000 277 ECDTVPGRQCMASSFFLLRS----------FKDVILYLSSIKSYYTSDDSFNFNFAQAKCALG--QYKEAEEMFLLVQNE 344 (507)
Q Consensus 277 ~~~~~~~~~~la~~~~~~~~----------~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~~~~~ 344 (507)
.|+...+|...+.++...++ +++++.+++++...+|++..+++++++++.+.| +++++++.+.++++.
T Consensus 59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~ 138 (567)
T 1dce_A 59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 138 (567)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence 34566777788899988888 999999999999999999999999999999999 779999999999988
Q ss_pred CCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHh-hHHHHHHHHHHHhhcC
Q psy12000 345 GLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRC-HYQEAIDIYKRILLDH 423 (507)
Q Consensus 345 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~-~~~~Ai~~~~~~l~~~ 423 (507)
++.+...|.. .+++....| .+++++++++++++.+
T Consensus 139 d~~N~~aW~~--------------------------------------------R~~~l~~l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 139 DERNFHCWDY--------------------------------------------RRFVAAQAAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp CTTCHHHHHH--------------------------------------------HHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred ccccccHHHH--------------------------------------------HHHHHHHcCCChHHHHHHHHHHHHHC
Confidence 8766544311 011222235 7899999999999999
Q ss_pred CchhhhHHHHHhhcccc--------------ccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCC
Q psy12000 424 KDLLALNVYGAMCYYKL--------------DYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT 476 (507)
Q Consensus 424 p~~~~~~~~la~~y~~~--------------g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~ 476 (507)
|.+..++.+.+.++.++ +.+++|++.+++++.++|++..+++.+++++.....
T Consensus 175 p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 175 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 99999999999998885 678999999999999999999999999999876543
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.11 E-value=3.2e-11 Score=96.79 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHhhc---CCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHH
Q psy12000 407 CHYQEAIDIYKRILLD---HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQ 483 (507)
Q Consensus 407 ~~~~~Ai~~~~~~l~~---~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~ 483 (507)
|++++|+..|+++++. +|+++.++..+|.+|.++|++++|+..++++++.+|+++.++..+|.+++.+++.+.|...
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 6677777777777777 4777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhCCCCc
Q psy12000 484 LKPILVSAGPRV 495 (507)
Q Consensus 484 ~~~~~~~~~~~~ 495 (507)
|++.++..|.+.
T Consensus 84 ~~~al~~~p~~~ 95 (117)
T 3k9i_A 84 LLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHCCCH
T ss_pred HHHHHHhCCCcH
Confidence 777777777663
No 188
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.11 E-value=5.7e-10 Score=90.52 Aligned_cols=66 Identities=11% Similarity=0.138 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 167 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 167 (507)
.++.+|.++...|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..+++++...|++
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 367899999999999999999999999999999999999999999999999999999999887755
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.10 E-value=1.2e-10 Score=91.92 Aligned_cols=86 Identities=15% Similarity=0.060 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHh
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS------RIALNLKA 175 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~a~~~~a 175 (507)
.+..+|.+++..|++++|+..|++++..+|+++.+++++|.++..+|++++|++.+++++..+|++ ..++..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 85 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLE 85 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999998 44444444
Q ss_pred hhhhhccChHHH
Q psy12000 176 CNTYKLFTSRAA 187 (507)
Q Consensus 176 ~~~~~~~~~~~A 187 (507)
.++...|+++.|
T Consensus 86 ~~~~~~~~~~~a 97 (111)
T 2l6j_A 86 LAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHCCCCC
T ss_pred HHHHHHHhHhhh
Confidence 444444433333
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.08 E-value=1.9e-10 Score=110.86 Aligned_cols=127 Identities=16% Similarity=0.126 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL-----------------ALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 164 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 164 (507)
.+..+|..++..|+|++|+..|++++...|++. .+++++|.|+.++|++++|+..+++++..+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 260 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE 260 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 377899999999999999999999999999877 489999999999999999999999999999
Q ss_pred CCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHH-HhhccHHHHHHHHHhc
Q psy12000 165 PTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYH-LKQEEHQEAFDLIKNL 233 (507)
Q Consensus 165 p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~l~~~ 233 (507)
|++..+++.+|.+++.+|++++|...|++++ ...|..+.++.+++.+. ...+..+++...+.++
T Consensus 261 p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al-----~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 261 EKNPKALFRRGKAKAELGQMDSARDDFRKAQ-----KYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT-----C---------------------------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999988888888888888888888887652 34455566677777663 3345555666666554
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.01 E-value=1.7e-09 Score=91.09 Aligned_cols=130 Identities=13% Similarity=-0.038 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL------ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS------RIA 170 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~a 170 (507)
+..+|.++...|++++|+.+|++++...|... .++..+|.++...|++++|++.+++++...|.. ..+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 67899999999999999999999998876433 478899999999999999999999998754332 234
Q ss_pred HHHHhhhhhhccChHHHHHhhHHHHHhhC-CCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000 171 LNLKACNTYKLFTSRAAENQLKPILVSIL-PPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN 232 (507)
Q Consensus 171 ~~~~a~~~~~~~~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~ 232 (507)
+..+|.++...|++++|...+++.+...- ....+..+.++.++|.++...|++++|+..+.+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55667777777888888777776542100 011122334567777777777777777766654
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.00 E-value=3e-09 Score=80.35 Aligned_cols=79 Identities=22% Similarity=0.173 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000 102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180 (507)
Q Consensus 102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~ 180 (507)
.+..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+++.++..++.++..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 3778999999999999999999999999999999999999999999999999999999999999998877766665443
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.97 E-value=2.7e-10 Score=89.93 Aligned_cols=90 Identities=13% Similarity=0.041 Sum_probs=77.5
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCc------hhhhhHHHhh
Q psy12000 397 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS------RIALNLKACN 470 (507)
Q Consensus 397 ~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~------~~a~~~~~~~ 470 (507)
..+|.+++..|+|++|+..|++++..+|+++.+++.+|.+|.++|++++|+..++++++++|++ +.++..++..
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 87 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELA 87 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH
Confidence 4467788888999999999999999999999999999999999999999999999999999999 7777778888
Q ss_pred hhhcCChHHHHHHHHH
Q psy12000 471 TYKLFTSRAAENQLKP 486 (507)
Q Consensus 471 ~~~~~~~~~~~~~~~~ 486 (507)
+..++..+.+...|++
T Consensus 88 ~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 88 QGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHCCCCCSSSSSS
T ss_pred HHHHHhHhhhHhHHHH
Confidence 7776655555444443
No 194
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.88 E-value=3.1e-09 Score=82.00 Aligned_cols=91 Identities=9% Similarity=-0.067 Sum_probs=77.2
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHhhcCCchhh-hHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCC
Q psy12000 398 CLASIHFLRCHYQEAIDIYKRILLDHKDLLA-LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT 476 (507)
Q Consensus 398 ~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~-~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~ 476 (507)
..+..++..|++++|+..|+++++.+|+++. +++.+|.+|.++|++++|+..|+++++.+|+++.++.. ..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 3456777889999999999999999999999 99999999999999999999999999999999988642 12
Q ss_pred hHHHHHHHHHHHHhCCCCcc
Q psy12000 477 SRAAENQLKPILVSAGPRVR 496 (507)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~ 496 (507)
...+...|+++....|.+..
T Consensus 77 ~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHHhccCccccc
Confidence 35556677777777777654
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.86 E-value=8.2e-09 Score=77.91 Aligned_cols=77 Identities=22% Similarity=0.189 Sum_probs=71.2
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhh
Q psy12000 397 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 473 (507)
Q Consensus 397 ~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~ 473 (507)
..++.+++..|++++|+..|++++...|+++.+++.+|.+|.++|++++|+..++++++.+|+++.++..++.++..
T Consensus 13 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 44567788889999999999999999999999999999999999999999999999999999999999988888764
No 196
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.82 E-value=4.1e-06 Score=84.62 Aligned_cols=182 Identities=8% Similarity=-0.052 Sum_probs=98.4
Q ss_pred HHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcC
Q psy12000 298 KDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLG 377 (507)
Q Consensus 298 ~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 377 (507)
+.+...|++++...|..+.+++..+..+...|+.++|...|++++.. |.+...+..+ +........++.....+....
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y-~~~~e~~~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYY-GLVMDEEAVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHH-HHHTTCTHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHH-HhhcchhHHHHHHHHHHHhhc
Confidence 44567888888888988888898999999999999999999999877 6655444321 111000000111110000000
Q ss_pred CcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccc-cchhHHHHHHHHHhc
Q psy12000 378 DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD-YYDVSQEQVAMYLAQ 456 (507)
Q Consensus 378 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g-~~~~A~~~~~~~l~~ 456 (507)
..+... .........+..+.......+..+.|..+|+++ ...+....++...|...+..| +.+.|..+|+.+++.
T Consensus 274 ~~~~~~---~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 274 AESAEK---VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred cchhhh---hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 000000 000000011122222222346788899999998 433223334433455555556 588999999999999
Q ss_pred CCCchhhhhHHHhhhhhcCChHHHHHHHH
Q psy12000 457 KPTSRIALNLKACNTYKLFTSRAAENQLK 485 (507)
Q Consensus 457 ~P~~~~a~~~~~~~~~~~~~~~~~~~~~~ 485 (507)
.|+++..+...+.....+++.+.+++.|.
T Consensus 350 ~~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 350 HPDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99887654433332223333444444333
No 197
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.82 E-value=1.7e-08 Score=77.77 Aligned_cols=68 Identities=12% Similarity=0.021 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLA-LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL 171 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~ 171 (507)
+..|.++...|++++|+..|++++..+|+++. +++.+|.++..+|++++|++.|++++..+|++..++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 56889999999999999999999999999999 999999999999999999999999999999998765
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.78 E-value=1.1e-08 Score=81.28 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=39.7
Q ss_pred HHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhC
Q psy12000 412 AIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSA 491 (507)
Q Consensus 412 Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (507)
|+..|++++..+|+++.+++.+|.+|...|++++|+..++++++.+|+++.++..+|.+++.+++.+.|...|++.++..
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 44444444444444444444445555555555555555555555555544444444444444444444444444444444
Q ss_pred C
Q psy12000 492 G 492 (507)
Q Consensus 492 ~ 492 (507)
|
T Consensus 84 ~ 84 (115)
T 2kat_A 84 Q 84 (115)
T ss_dssp H
T ss_pred c
Confidence 4
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.75 E-value=2.1e-08 Score=77.64 Aligned_cols=68 Identities=15% Similarity=0.128 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12000 100 LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 167 (507)
Q Consensus 100 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 167 (507)
+..++.+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|++.|++++...|..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 34478999999999999999999999999999999999999999999999999999999999876644
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.74 E-value=1.2e-08 Score=78.93 Aligned_cols=89 Identities=13% Similarity=0.104 Sum_probs=70.7
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcC
Q psy12000 396 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF 475 (507)
Q Consensus 396 ~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~ 475 (507)
...+|.+++..|++++|+..|+++++.+|+++.+++.+|.+|.++|++++|+..|++++++.|++...
T Consensus 10 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~------------ 77 (100)
T 3ma5_A 10 RYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ------------ 77 (100)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch------------
Confidence 45677888889999999999999999999999999999999999999999999999999987654432
Q ss_pred ChHHHHHHHHHHHHhCCCCccCCC
Q psy12000 476 TSRAAENQLKPILVSAGPRVRFPP 499 (507)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~ 499 (507)
.+..+++.++...|.....++
T Consensus 78 ---~~~~~l~~~l~~~~~~~~~~~ 98 (100)
T 3ma5_A 78 ---KDLSELQDAKLKAEGLEHHHH 98 (100)
T ss_dssp ---HHHHHHHHHHHHHHTTC----
T ss_pred ---hHHHHHHHHHHHccccccccc
Confidence 233356667776666655543
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.73 E-value=5.4e-08 Score=77.26 Aligned_cols=76 Identities=13% Similarity=0.100 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHH
Q psy12000 118 EAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKP 193 (507)
Q Consensus 118 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~ 193 (507)
+|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|...+++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4667777777777777777777777777777777777777777777777665555555555555555555444443
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.70 E-value=1e-07 Score=95.69 Aligned_cols=127 Identities=8% Similarity=-0.001 Sum_probs=99.9
Q ss_pred HHHHHhhcCHHHHHHHHHHHhcC-----CCCCh---hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000 13 GYCHFHLGQYKQALGIYETLRHL-----PNPPE---DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG 84 (507)
Q Consensus 13 g~~~~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (507)
+..+..+|+|++|+..|+++++. .|+++ ..+.++|.+|..+|+|++|+.+++++.. +
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~----------i----- 380 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD----------G----- 380 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------H-----
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----------H-----
Confidence 44577899999999999999874 45555 5688999999999999999999887632 0
Q ss_pred ChhHHHHHHHHHh-hcHH---HHHHHHHHHHHhhcHHHHHHHHHHHHHh-----CCc---hhHHHHHHHHHHHhcCCHHH
Q psy12000 85 DEKSLMEYHQKLE-DSLE---EQLCLASIHFLRCHYQEAIDIYKRILLD-----HKD---LLALNVYGAMCYYKLDYYDV 152 (507)
Q Consensus 85 ~~~~~~~~~~~l~-~~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~---~~~~~~~la~~~~~~g~~~~ 152 (507)
....+. ++|. .+.+||.+|..+|+|++|+.+|++++.+ .|+ ..++..+++.++..++.+++
T Consensus 381 -------~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 381 -------YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp -------HHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 1121 2778999999999999999999999975 344 45667789999999999999
Q ss_pred HHHHHHHHH
Q psy12000 153 SQEQVAMYL 161 (507)
Q Consensus 153 A~~~~~~~l 161 (507)
|...|.++.
T Consensus 454 ae~~~~~~~ 462 (490)
T 3n71_A 454 NEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.68 E-value=2.1e-07 Score=93.48 Aligned_cols=129 Identities=8% Similarity=0.003 Sum_probs=92.3
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhC--------CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCcHH-
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRILLDH--------KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ-----KPTSRI- 169 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~- 169 (507)
+..+..+..+|+|++|+..|++++... |+...++.+||.+|..+|+|++|+.++++++.. .|+++.
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 345556778999999999999999863 455678899999999999999999999998853 455543
Q ss_pred --HHHHHhhhhhhccChHHHHHhhHHHHH---hhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000 170 --ALNLKACNTYKLFTSRAAENQLKPILV---SILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN 232 (507)
Q Consensus 170 --a~~~~a~~~~~~~~~~~A~~~l~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~ 232 (507)
.++.+|.++..+|++++|+..+++++. ..+....|...+...+++.++..++.|++|...+.+
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~ 460 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHK 460 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777777777777777766543 334444444445556666666667777766665543
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.66 E-value=2.3e-07 Score=76.47 Aligned_cols=112 Identities=11% Similarity=-0.110 Sum_probs=94.5
Q ss_pred hcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhh
Q psy12000 19 LGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLED 98 (507)
Q Consensus 19 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 98 (507)
.+|+++|+.+|+++.+..+ +.+. +|.+|...+.+++|+.+++++.+. .
T Consensus 8 ~~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------------------------g 55 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL----------------------------N 55 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT----------------------------T
T ss_pred ccCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC----------------------------C
Confidence 4689999999999998764 3444 999999999999999998876321 1
Q ss_pred cHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q psy12000 99 SLEEQLCLASIHFL----RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQK 164 (507)
Q Consensus 99 ~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~ 164 (507)
++...+.+|.+|.. .+++++|+.+|+++.+. .++.+.++||.+|.. .+++++|+++|+++.+..
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 23347789999998 89999999999999876 678899999999999 999999999999998763
No 205
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.65 E-value=2.6e-07 Score=75.76 Aligned_cols=75 Identities=20% Similarity=0.185 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhh---cHHHHHHHHHHHHHhC-C-chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhh
Q psy12000 103 QLCLASIHFLRC---HYQEAIDIYKRILLDH-K-DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN 177 (507)
Q Consensus 103 ~~~la~~~~~~g---~~~~A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~ 177 (507)
.+.+|..+.+.+ +.++++.++++++..+ | +..+.+|++|..++++|+|++|+++++++++.+|++..+..++..+
T Consensus 35 ~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 35 QFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 556666666655 6778999999999988 7 6789999999999999999999999999999999999887765444
No 206
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.61 E-value=3.6e-07 Score=71.07 Aligned_cols=75 Identities=15% Similarity=0.105 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-------CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q psy12000 100 LEEQLCLASIHFLRCHYQEAIDIYKRILLDH-------KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN 172 (507)
Q Consensus 100 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~ 172 (507)
+.+.+.+|..++.+|+|..|+..|++++... +....++..+|.|++++|++++|+.+++++++.+|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4568899999999999999999999999864 356789999999999999999999999999999999987754
Q ss_pred HH
Q psy12000 173 LK 174 (507)
Q Consensus 173 ~~ 174 (507)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.50 E-value=2.8e-06 Score=80.53 Aligned_cols=141 Identities=9% Similarity=-0.051 Sum_probs=98.3
Q ss_pred HHHHHHhhcC---HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000 12 LGYCHFHLGQ---YKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS 88 (507)
Q Consensus 12 lg~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (507)
.|..+...++ +.+|+.+|+++++++|+.+.++-.++.++.....+. ..... .. ..+ ..
T Consensus 202 ra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~---------~~~~~--~~-~~l-------~~ 262 (372)
T 3ly7_A 202 QAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQH---------PLDEK--QL-AAL-------NT 262 (372)
T ss_dssp HHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS---------CCCHH--HH-HHH-------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccC---------CCchh--hH-HHH-------HH
Confidence 4666665544 588999999999999999999988888887221110 00000 00 000 00
Q ss_pred HHHHHHHHh---hcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12000 89 LMEYHQKLE---DSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP 165 (507)
Q Consensus 89 ~~~~~~~l~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 165 (507)
.......+. ..+..+..+|.++...|++++|+..+++++..+|+ ..++..+|.++...|++++|++.|++++.++|
T Consensus 263 a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 000001111 12233667788888899999999999999999986 56778899999999999999999999999999
Q ss_pred CcHHHHHH
Q psy12000 166 TSRIALNL 173 (507)
Q Consensus 166 ~~~~a~~~ 173 (507)
..+. +++
T Consensus 342 ~~~t-~~~ 348 (372)
T 3ly7_A 342 GANT-LYW 348 (372)
T ss_dssp SHHH-HHH
T ss_pred CcCh-HHH
Confidence 8874 443
No 208
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.48 E-value=4.6e-07 Score=70.48 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHhhcC-------CchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHH
Q psy12000 395 EQLCLASIHFLRCHYQEAIDIYKRILLDH-------KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLK 467 (507)
Q Consensus 395 ~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~-------p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~ 467 (507)
+-+.+|..++..++|..|+..|+++++.. +....++..+|.||+++|++++|+..++++++..|+++.+++.+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 34567889999999999999999998742 34567889999999999999999999999999999999997766
Q ss_pred H
Q psy12000 468 A 468 (507)
Q Consensus 468 ~ 468 (507)
.
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 5
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.48 E-value=6.9e-07 Score=67.65 Aligned_cols=70 Identities=9% Similarity=-0.101 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhhc---HHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 100 LEEQLCLASIHFLRCH---YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 100 ~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
++.+..+|.+++..++ .++|...+++++..+|+++.+.+.+|..++..|+|++|+.++++++..+|.++.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 4457788888876666 799999999999999999999999999999999999999999999999998543
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.32 E-value=1.2e-06 Score=66.23 Aligned_cols=67 Identities=9% Similarity=-0.108 Sum_probs=47.8
Q ss_pred HHHHHHHHHhHhh---HHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchh
Q psy12000 396 QLCLASIHFLRCH---YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 462 (507)
Q Consensus 396 ~~~l~~~~~~~~~---~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~ 462 (507)
...++.+.+..++ .++|...+++++..+|+++.+.+.+|..+++.|+|++|+..|+++++.+|+++.
T Consensus 9 ~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 9 LAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 3445555554433 577777777777777777777777777777777777777777777777777444
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.30 E-value=1e-05 Score=66.39 Aligned_cols=108 Identities=8% Similarity=-0.129 Sum_probs=82.9
Q ss_pred hhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh----ccChHHHH
Q psy12000 113 RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK----LFTSRAAE 188 (507)
Q Consensus 113 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~----~~~~~~A~ 188 (507)
.+++++|+.+|+++.+..+. .+. +|.+|...+..++|++.|+++.+. .++.+.+.++.++.. .+++++|.
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 46788899999998877633 333 888888888888899999988876 567777777777776 67788888
Q ss_pred HhhHHHHHhhCCCCCCChhHhHHHHHHHHHh----hccHHHHHHHHHhc
Q psy12000 189 NQLKPILVSILPPLIDVIPESRLNLVIYHLK----QEEHQEAFDLIKNL 233 (507)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~l~~~ 233 (507)
..+++..+ .-.+.+..+||.+|.. .+++++|+..+++.
T Consensus 82 ~~~~~Aa~-------~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 82 QYYSKACG-------LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHHH-------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHc-------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 88887653 1346778888888888 78888888877653
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.27 E-value=4.5e-05 Score=69.37 Aligned_cols=82 Identities=10% Similarity=-0.132 Sum_probs=66.3
Q ss_pred hcHHHHHHHHHHHHHhCCc--hhHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCc-HHHHHHHhhhhhh-ccCh
Q psy12000 114 CHYQEAIDIYKRILLDHKD--LLALNVYGAMCYYKL-----DYYDVSQEQVAMYLAQKPTS-RIALNLKACNTYK-LFTS 184 (507)
Q Consensus 114 g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~p~~-~~a~~~~a~~~~~-~~~~ 184 (507)
+...+|...++++++++|+ +..++..+|.+|... |+.++|.++|++++.++|+. ..+....|..++. .|+.
T Consensus 177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 3467899999999999998 567999999999995 99999999999999999975 7777666666655 3666
Q ss_pred HHHHHhhHHHH
Q psy12000 185 RAAENQLKPIL 195 (507)
Q Consensus 185 ~~A~~~l~~~~ 195 (507)
+.+...+++.+
T Consensus 257 ~~a~~~L~kAL 267 (301)
T 3u64_A 257 AGFDEALDRAL 267 (301)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 213
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.24 E-value=0.00016 Score=72.99 Aligned_cols=159 Identities=11% Similarity=0.041 Sum_probs=98.7
Q ss_pred hhHHHHHHHhhcC---------HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccc-hHHH
Q psy12000 9 DAWLGYCHFHLGQ---------YKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTR-LSFH 78 (507)
Q Consensus 9 ~~~lg~~~~~~g~---------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~-~~~~ 78 (507)
..|..++-+..++ .+.....|++++...|..+.+|+..+..+...|+.++|..+++++... |... +.+.
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~ 251 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLY 251 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 3677777776654 456788999999999999999999999999999999999999988765 5443 2332
Q ss_pred HHHhcCChhHHHHHHHHH------------hhcH-HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Q psy12000 79 LSHKLGDEKSLMEYHQKL------------EDSL-EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYY 145 (507)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l------------~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 145 (507)
.+.............+.. ...+ ..+...+......++.+.|..+|+++ ...+....++...|.+-.
T Consensus 252 y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 252 YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEY 330 (493)
T ss_dssp HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHH
T ss_pred HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHH
Confidence 222211111111111110 0011 11445555555667777788888777 322223344444455555
Q ss_pred hcC-CHHHHHHHHHHHHhcCCCcHH
Q psy12000 146 KLD-YYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 146 ~~g-~~~~A~~~~~~~l~~~p~~~~ 169 (507)
..+ +.+.|..+|+.+++..|+.+.
T Consensus 331 ~~~~d~~~ar~ife~al~~~~~~~~ 355 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKHPDSTL 355 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHCTTCHH
T ss_pred HHCCChHHHHHHHHHHHHHCCCCHH
Confidence 544 477777777777777676654
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.21 E-value=3.7e-06 Score=68.96 Aligned_cols=78 Identities=19% Similarity=0.169 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhHh---hHHHHHHHHHHHhhcC-C-chhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHH
Q psy12000 393 LEEQLCLASIHFLRC---HYQEAIDIYKRILLDH-K-DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLK 467 (507)
Q Consensus 393 ~~~~~~l~~~~~~~~---~~~~Ai~~~~~~l~~~-p-~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~ 467 (507)
.+....+++.....+ +++++|..++.+++.+ | +..+..|++|..|+++|+|++|+..++.+|+++|+|..|..++
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 345566777777644 8899999999999988 8 5678999999999999999999999999999999999998887
Q ss_pred Hhh
Q psy12000 468 ACN 470 (507)
Q Consensus 468 ~~~ 470 (507)
..+
T Consensus 112 ~~i 114 (152)
T 1pc2_A 112 RLI 114 (152)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.17 E-value=7.9e-05 Score=67.75 Aligned_cols=129 Identities=9% Similarity=0.048 Sum_probs=90.8
Q ss_pred hhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhh----ccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhh
Q psy12000 219 KQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQ----DTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLL 294 (507)
Q Consensus 219 ~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 294 (507)
++++.++--..+.+..+.++...+..|.+...... ...+....+.|...++++.+.++....=.++..||..|...
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHS
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhC
Confidence 34433333444556667777777777776655322 13456677777777765543322211222566799999884
Q ss_pred -----cCHHHHHHHHHHhhhhcCCC-chHHHHHHHHHHh-hCCHHHHHHHHHhhcccCCC
Q psy12000 295 -----RSFKDVILYLSSIKSYYTSD-DSFNFNFAQAKCA-LGQYKEAEEMFLLVQNEGLK 347 (507)
Q Consensus 295 -----~~~~~Ai~~~~~~~~~~~~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~~~~~~~~ 347 (507)
|+.++|..+|++++.++|+. ..+++..|..+.. +|++++|...+++++..++.
T Consensus 213 Pp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999999999999975 7888889999988 49999999999999865543
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.06 E-value=2.5e-05 Score=77.08 Aligned_cols=93 Identities=9% Similarity=-0.050 Sum_probs=64.3
Q ss_pred HHHHhhcHHHHHHHHHHHHHhC-----C---chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000 109 IHFLRCHYQEAIDIYKRILLDH-----K---DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180 (507)
Q Consensus 109 ~~~~~g~~~~A~~~~~~~l~~~-----p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~ 180 (507)
.....|+|++|+..|++++.+. | +...++.+||.+|..+|+|++|+.++++++...
T Consensus 307 ~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~---------------- 370 (433)
T 3qww_A 307 RAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPY---------------- 370 (433)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------
T ss_pred HhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH----------------
Confidence 3345688999999999999862 3 445678899999999999999999999987431
Q ss_pred ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000 181 LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN 232 (507)
Q Consensus 181 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~ 232 (507)
+ +.+....|.....+.+||.+|..+|+|++|...+.+
T Consensus 371 -----------~----~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 371 -----------S----KHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKK 407 (433)
T ss_dssp -----------H----HHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------H----HHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 0 112222333334456666666666666666665543
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.06 E-value=1.8e-05 Score=78.12 Aligned_cols=112 Identities=9% Similarity=0.029 Sum_probs=82.4
Q ss_pred HHHHhhcCHHHHHHHHHHHhcC-----CCCCh---hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000 14 YCHFHLGQYKQALGIYETLRHL-----PNPPE---DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD 85 (507)
Q Consensus 14 ~~~~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (507)
..+..+|+|++|+..|+++++. .|+++ ..+.++|.+|..+|+|++|+.+++++.. +
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~----------i------ 358 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME----------P------ 358 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----------H------
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----------h------
Confidence 4466789999999999999975 35555 5678999999999999999999987632 0
Q ss_pred hhHHHHHHHHHh-hcHH---HHHHHHHHHHHhhcHHHHHHHHHHHHHh-----CCchh---HHHHHHHHHHHhc
Q psy12000 86 EKSLMEYHQKLE-DSLE---EQLCLASIHFLRCHYQEAIDIYKRILLD-----HKDLL---ALNVYGAMCYYKL 147 (507)
Q Consensus 86 ~~~~~~~~~~l~-~~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~ 147 (507)
+...+. .+|. .+++||.+|..+|++++|+.+|++++.+ .|+++ ++..+|+.+...+
T Consensus 359 ------~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 359 ------YRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp ------HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 001111 1121 2778999999999999999999999976 35554 4555666665543
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.03 E-value=2.4e-05 Score=77.32 Aligned_cols=58 Identities=5% Similarity=-0.057 Sum_probs=48.2
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhC--------CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 105 CLASIHFLRCHYQEAIDIYKRILLDH--------KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 105 ~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
....-+..+|+|++|+..|++++... |+...++.++|.+|..+|+|++|+.++++++.
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~ 357 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME 357 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 33445668899999999999999763 34456788999999999999999999999874
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.01 E-value=7.8e-05 Score=70.69 Aligned_cols=73 Identities=8% Similarity=-0.005 Sum_probs=60.5
Q ss_pred HHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhh
Q psy12000 399 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 473 (507)
Q Consensus 399 l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~ 473 (507)
++......|++++|+..+++++..+|+ ...+..+|+++.-.|++++|++.|++++.++|..+ .+.+...+-|-
T Consensus 283 lal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~~~~l~F~ 355 (372)
T 3ly7_A 283 KAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYWIENGIFQ 355 (372)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHHHHHSSSC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHHHhCceee
Confidence 344556679999999999999999986 44557789999999999999999999999999987 45655555554
No 220
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.00 E-value=1.3e-05 Score=63.26 Aligned_cols=76 Identities=20% Similarity=0.181 Sum_probs=63.6
Q ss_pred HHHHHHHHHhH---hhHHHHHHHHHHHhhcC-C-chhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhh
Q psy12000 396 QLCLASIHFLR---CHYQEAIDIYKRILLDH-K-DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN 470 (507)
Q Consensus 396 ~~~l~~~~~~~---~~~~~Ai~~~~~~l~~~-p-~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~ 470 (507)
...++|..... .+..++|.+++.++... | ..-+..+++|..++++|+|++|...++.+|++.|+|..|..++..+
T Consensus 38 ~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 38 QFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455555433 46678999999999987 7 4567899999999999999999999999999999999999988776
Q ss_pred h
Q psy12000 471 T 471 (507)
Q Consensus 471 ~ 471 (507)
.
T Consensus 118 ~ 118 (126)
T 1nzn_A 118 D 118 (126)
T ss_dssp H
T ss_pred H
Confidence 3
No 221
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.99 E-value=2.2e-05 Score=62.00 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=64.4
Q ss_pred HHHHHHHHHh---HhhHHHHHHHHHHHhhcCCch-hhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhh
Q psy12000 396 QLCLASIHFL---RCHYQEAIDIYKRILLDHKDL-LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNT 471 (507)
Q Consensus 396 ~~~l~~~~~~---~~~~~~Ai~~~~~~l~~~p~~-~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~ 471 (507)
...++|.... ..+..++|.+++.++..+|.. -+..+++|..++|+|+|++|..+.+.+|++.|+|..|..++..+-
T Consensus 43 ~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie 122 (134)
T 3o48_A 43 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE 122 (134)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3444444443 257889999999999999854 668899999999999999999999999999999999999888774
Q ss_pred h
Q psy12000 472 Y 472 (507)
Q Consensus 472 ~ 472 (507)
-
T Consensus 123 ~ 123 (134)
T 3o48_A 123 D 123 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 222
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.96 E-value=5.7e-05 Score=74.49 Aligned_cols=68 Identities=7% Similarity=0.077 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHh--------CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCcHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLD--------HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA-----QKPTSRI 169 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~ 169 (507)
+.++|.+|..+|+|++|+.+|++++.. +|+....+.+||.+|..+|++++|+.++++++. .-|+++.
T Consensus 343 ~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 343 MYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 668999999999999999999999976 245556789999999999999999999999985 3577765
Q ss_pred H
Q psy12000 170 A 170 (507)
Q Consensus 170 a 170 (507)
.
T Consensus 423 ~ 423 (433)
T 3qww_A 423 I 423 (433)
T ss_dssp H
T ss_pred H
Confidence 3
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.94 E-value=3e-05 Score=61.11 Aligned_cols=77 Identities=19% Similarity=0.173 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhhcHHH---HHHHHHHHHHhC-C-chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000 101 EEQLCLASIHFLRCHYQE---AIDIYKRILLDH-K-DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA 175 (507)
Q Consensus 101 ~~~~~la~~~~~~g~~~~---A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a 175 (507)
...+.+|+.+.+..+... +|.+++.++..+ | ...+.+|.+|..++++|+|++|+.+++.+++.+|++..|..++.
T Consensus 36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 447888888887766665 999999999988 6 57889999999999999999999999999999999999877665
Q ss_pred hh
Q psy12000 176 CN 177 (507)
Q Consensus 176 ~~ 177 (507)
.+
T Consensus 116 ~i 117 (126)
T 1nzn_A 116 LI 117 (126)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 224
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.92 E-value=4.3e-05 Score=61.11 Aligned_cols=75 Identities=15% Similarity=0.116 Sum_probs=63.6
Q ss_pred HHHHHHHHHh---HhhHHHHHHHHHHHhhcCCc-hhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhh
Q psy12000 396 QLCLASIHFL---RCHYQEAIDIYKRILLDHKD-LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN 470 (507)
Q Consensus 396 ~~~l~~~~~~---~~~~~~Ai~~~~~~l~~~p~-~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~ 470 (507)
...++|.... ..+..++|.+++.++...|+ .-+..+++|..++|+|+|++|..+.+.+|++.|+|..|..++..+
T Consensus 42 ~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 42 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3445555443 25778999999999999885 456889999999999999999999999999999999999988776
No 225
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.80 E-value=0.00021 Score=56.38 Aligned_cols=78 Identities=14% Similarity=0.142 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000 100 LEEQLCLASIHFLRC---HYQEAIDIYKRILLDHK-DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA 175 (507)
Q Consensus 100 ~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a 175 (507)
+...+.+|+.+.+.. +..++|.+++.++..+| ...+.++.+|..++++|+|++|.++.+.+++..|++..|..++.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 119 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 344788888887754 45589999999999999 46889999999999999999999999999999999999877665
Q ss_pred hh
Q psy12000 176 CN 177 (507)
Q Consensus 176 ~~ 177 (507)
.|
T Consensus 120 ~I 121 (134)
T 3o48_A 120 MV 121 (134)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 226
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.80 E-value=0.00026 Score=71.46 Aligned_cols=165 Identities=10% Similarity=-0.026 Sum_probs=107.0
Q ss_pred HHHHHHHHHhhccHHHHHHHHHhcCC----CChHHHHHHHHHHHHhhhc--cCcHHHHHHHHHHHHHhCCCcccccchhh
Q psy12000 210 RLNLVIYHLKQEEHQEAFDLIKNLEP----SVPQEYILKAVVQVTIGQD--TGSREMVKAAQALFQLVGSSQSECDTVPG 283 (507)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~l~~~~~----~~~~~~~~~~~~~~~~g~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 283 (507)
...+...+.+.|+.++|++++.++.. -+...+...-.++...+.. ......++.|.++|+........|+. .+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~-~t 107 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE-AT 107 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH-HH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH-HH
Confidence 44556788889999999998876521 1222222111111111111 12345678888888765444334443 34
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHhhhhc--CCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCC-CchhhhhhhhcccC
Q psy12000 284 RQCMASSFFLLRSFKDVILYLSSIKSYY--TSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGL-KNDYVYISHLTKCS 360 (507)
Q Consensus 284 ~~~la~~~~~~~~~~~Ai~~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~ 360 (507)
+..+...+.+.|++++|+++|+.+.... |+. ..+..+-..|.+.|+.++|.+.|+++..... ++...|. .|..++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~-~Li~~~ 185 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL-RSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELA-ALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHH-HHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-ceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHH
Confidence 4567888999999999999999887654 333 3344477889999999999999999875443 3444443 355677
Q ss_pred ccchhhhHHHHHHHHcC
Q psy12000 361 PSRAKTRLSFHLSHKLG 377 (507)
Q Consensus 361 ~~~~~~~~A~~~~~~~~ 377 (507)
.+.|+.++|++++.++.
T Consensus 186 ~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred hhCCCHHHHHHHHHHHH
Confidence 78888999988877653
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.73 E-value=0.00035 Score=55.92 Aligned_cols=78 Identities=14% Similarity=0.142 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000 100 LEEQLCLASIHFLRC---HYQEAIDIYKRILLDHK-DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA 175 (507)
Q Consensus 100 ~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a 175 (507)
++..+++|+.+.+.. +-.++|.+++.++...| ...+..|.||..++++|+|++|.++.+.+++..|++..+..++.
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~ 118 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 118 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 344788888888755 44589999999999998 57789999999999999999999999999999999998877665
Q ss_pred hh
Q psy12000 176 CN 177 (507)
Q Consensus 176 ~~ 177 (507)
.+
T Consensus 119 ~I 120 (144)
T 1y8m_A 119 MV 120 (144)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 228
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.70 E-value=0.0039 Score=62.83 Aligned_cols=162 Identities=8% Similarity=-0.029 Sum_probs=89.0
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhc--CCCcHHHH
Q psy12000 105 CLASIHFLRCHYQEAIDIYKRILLDH--KDLLALNVYGAMCYYKL---------DYYDVSQEQVAMYLAQ--KPTSRIAL 171 (507)
Q Consensus 105 ~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~--~p~~~~a~ 171 (507)
.+-..+.+.|+.++|+++|+++.... |+... +..+-.++... +..++|.++|+++... .|+. ..+
T Consensus 31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~t-yn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~-~ty 108 (501)
T 4g26_A 31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQYH-YNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE-ATF 108 (501)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH-HHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH-HHH
Confidence 34456677888888888888887764 44333 32332333332 3356777777776543 3433 234
Q ss_pred HHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q psy12000 172 NLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTI 251 (507)
Q Consensus 172 ~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 251 (507)
+.+...+.+.|+.++|...|+.+.+.. ..| +...+..+...|.+.|+.++|.+++.++
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g---~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M------------------ 166 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFG---IQP-RLRSYGPALFGFCRKGDADKAYEVDAHM------------------ 166 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTT---CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC---CCC-ccceehHHHHHHHHCCCHHHHHHHHHHH------------------
Confidence 444444455666666666666554211 111 1233445555566666666666555443
Q ss_pred hhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhc
Q psy12000 252 GQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYY 311 (507)
Q Consensus 252 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~ 311 (507)
......|+. ..+..|..++.+.|+.++|.+++++..+..
T Consensus 167 --------------------~~~G~~Pd~-~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 167 --------------------VESEVVPEE-PELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp --------------------HHTTCCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred --------------------HhcCCCCCH-HHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 111112221 223346677888888888888888876544
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.15 E-value=0.0032 Score=51.89 Aligned_cols=119 Identities=13% Similarity=0.059 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh---------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCcHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL---------ALNVYGAMCYYKLDYYDVSQEQVAMYLAQK---PTSRIA 170 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~a 170 (507)
++.-...++..|.|+.|+-....++....+++ .+++.+|.+++..++|..|...|+++++.. |....+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34455667888999999999988776643322 478889999999999999999999987532 222211
Q ss_pred HHHHhhhhhhccChHHHHHhhHHHHHhhCCC--CCCChhHhHHHHHHHHHhhccHHHHHHHHHhcC--CCChHH
Q psy12000 171 LNLKACNTYKLFTSRAAENQLKPILVSILPP--LIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLE--PSVPQE 240 (507)
Q Consensus 171 ~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~--~~~~~~ 240 (507)
. ..+ +. + ...+. ......+.++.++.+|.+.+++++|+..++.+. ..+|..
T Consensus 103 ~---~~~----~~--------~----ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kv 157 (167)
T 3ffl_A 103 R---PST----GN--------S----ASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKI 157 (167)
T ss_dssp ---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHH
T ss_pred c---ccc----cc--------c----CCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHH
Confidence 0 000 00 0 00000 012245788999999999999999999999874 345543
No 230
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.01 E-value=0.002 Score=53.05 Aligned_cols=61 Identities=21% Similarity=0.361 Sum_probs=51.5
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHHhcC------CCC-------------------ChhhHHHHHHHHHhhccHHHHHHH
Q psy12000 8 TDAWLGYCHFHLGQYKQALGIYETLRHL------PNP-------------------PEDTEFNIASCYFYLGMYLQANQI 62 (507)
Q Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~------~p~-------------------~~~~~~~la~~~~~~g~~~eA~~~ 62 (507)
+.+++|.++|..|+|.+|...|+++|+. .|. +.++.|.++.|+..+|++++|+..
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~ 144 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAI 144 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHH
Confidence 5688999999999999999999998653 111 126889999999999999999999
Q ss_pred HHhCCC
Q psy12000 63 LEKVPP 68 (507)
Q Consensus 63 ~~~~~~ 68 (507)
++.++.
T Consensus 145 Le~Ip~ 150 (167)
T 3ffl_A 145 LDGIPS 150 (167)
T ss_dssp HHTSCG
T ss_pred HhcCCc
Confidence 999874
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.73 E-value=0.018 Score=46.43 Aligned_cols=115 Identities=8% Similarity=-0.028 Sum_probs=84.0
Q ss_pred CCCCChhhHHHHHHHHHhhccH------HHHHHHHHhCCCC-ccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHH
Q psy12000 35 LPNPPEDTEFNIASCYFYLGMY------LQANQILEKVPPS-RAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLA 107 (507)
Q Consensus 35 ~~p~~~~~~~~la~~~~~~g~~------~eA~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la 107 (507)
..|++++.|.......-..|+. +.-.+.|+++... ++... ..... |. --+...|
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~---------~~wrr---YI-------~LWIrYA 68 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKY---------GQNES---FA-------RIQVRFA 68 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGG---------TTCHH---HH-------HHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcccc---------ccHHH---HH-------HHHHHHH
Confidence 4799999999999888888998 7777888876431 12110 00000 00 0022233
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 108 SIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
.. ...++.++|.++|+.+++.+..+..++..-|..-.+.|+.++|.+++.+++...|....
T Consensus 69 ~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 69 EL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 22 44589999999999999998888889999999999999999999999999999888765
No 232
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.60 E-value=0.22 Score=40.79 Aligned_cols=111 Identities=16% Similarity=0.118 Sum_probs=78.0
Q ss_pred chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCC----ccccchHHHHHHh
Q psy12000 7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPS----RAKTRLSFHLSHK 82 (507)
Q Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~----~~~~~~~~~~~~~ 82 (507)
+-.+.++-..+..|.|..|+-.+.. -+.....++.+.||.+.++|..|+.+++++... ++...+ .+-.-
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~--~~~~f 106 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDA--RIQEM 106 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCH--HHHTT
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccc--cccee
Confidence 5566788899999999998877643 345677889999999999999999999887532 222211 11111
Q ss_pred cCChhHHHHHHHHHhhcHHH-HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhH
Q psy12000 83 LGDEKSLMEYHQKLEDSLEE-QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLA 135 (507)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 135 (507)
+-+.++ .+- +..+|.+..+.|+-++||.+|.......|-.+.
T Consensus 107 fvd~~D-----------kEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 107 FVDPGD-----------EEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp SCCTTC-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred eeccch-----------HHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 111111 111 456899999999999999999999988875544
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.17 Score=42.28 Aligned_cols=56 Identities=18% Similarity=0.026 Sum_probs=46.2
Q ss_pred ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCC
Q psy12000 5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPP 68 (507)
Q Consensus 5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~ 68 (507)
+++.++.+ ..+.|+++.|.+..+++ ++...|..+|......|+++-|+.+|.++.+
T Consensus 7 D~~~rF~L---AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 7 DPHIRFDL---ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp CHHHHHHH---HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred ChHHHHHH---HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 44555554 46789999999998776 5677899999999999999999999998754
No 234
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.73 E-value=0.2 Score=53.40 Aligned_cols=45 Identities=18% Similarity=0.090 Sum_probs=24.4
Q ss_pred HHHHhhcCHHHHHH-HHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHH
Q psy12000 14 YCHFHLGQYKQALG-IYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQIL 63 (507)
Q Consensus 14 ~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 63 (507)
......+++++|.+ .+.. -|+ ......++..+...|.+++|+...
T Consensus 607 ~~~~~~~~~~~a~~~~l~~----i~~-~~~~~~~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN----VEG-KDSLTKIARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG----CCC-HHHHHHHHHHHHHTTCHHHHHHHC
T ss_pred hHHHHhCCHHHHHHHHHhc----CCc-hHHHHHHHHHHHhCCChHHheecC
Confidence 34455677777765 3311 110 122255666667777777776543
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.42 E-value=0.14 Score=41.32 Aligned_cols=119 Identities=8% Similarity=-0.071 Sum_probs=79.6
Q ss_pred hcCCCchHHHHHHHHHHhhCCH------HHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHH
Q psy12000 310 YYTSDDSFNFNFAQAKCALGQY------KEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLM 383 (507)
Q Consensus 310 ~~~~~~~~~~~lg~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 383 (507)
..|++++.++.......+.|+. ++-++.|++++..-|+.. ...| +.=+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k--~~~w-----------rrYI~L----------- 63 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK--YGQN-----------ESFARI----------- 63 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG--GTTC-----------HHHHHH-----------
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc--cccH-----------HHHHHH-----------
Confidence 3577777777778888888888 888899999875443321 1111 100000
Q ss_pred HHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhh
Q psy12000 384 EYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA 463 (507)
Q Consensus 384 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a 463 (507)
++.++ .....++.++|.++|+.++..+..+..++...|---.+.|+.++|.+.+.+++.+-|.....
T Consensus 64 ------------WIrYA-~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 64 ------------QVRFA-ELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp ------------HHHHH-HHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred ------------HHHHH-HHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 01111 11112678889999999988787786677666766678999999999999999999987765
Q ss_pred hh
Q psy12000 464 LN 465 (507)
Q Consensus 464 ~~ 465 (507)
+.
T Consensus 131 le 132 (161)
T 4h7y_A 131 LE 132 (161)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 236
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.29 E-value=1.9 Score=41.39 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=70.9
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHhcCCC---ChHHH---HHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccch
Q psy12000 208 ESRLNLVIYHLKQEEHQEAFDLIKNLEPS---VPQEY---ILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTV 281 (507)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~A~~~l~~~~~~---~~~~~---~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 281 (507)
.+-+.||.+|.++|++++-.+++....|- -+.+. +.+..+-....-.......++--.+.++.... +...+
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~---~~r~f 96 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ---EKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH---TTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH---HHHHH
Confidence 35678999999999999998888765432 22222 22222222211111111111111111111100 00011
Q ss_pred -hhh--hHHHHHHHhhcCHHHHHHHHHHhhhhcCC--Cc----hHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000 282 -PGR--QCMASSFFLLRSFKDVILYLSSIKSYYTS--DD----SFNFNFAQAKCALGQYKEAEEMFLLVQ 342 (507)
Q Consensus 282 -~~~--~~la~~~~~~~~~~~Ai~~~~~~~~~~~~--~~----~~~~~lg~~~~~~g~~~~A~~~~~~~~ 342 (507)
... ..||..|+..|+|.+|+..+.++...... +. .++..-..+|..+|++.++...|.++.
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 111 15788888999999998877766543222 22 333445677888889888888888764
No 237
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.17 E-value=1.1 Score=36.80 Aligned_cols=124 Identities=13% Similarity=0.038 Sum_probs=88.1
Q ss_pred HHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHH
Q psy12000 16 HFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQK 95 (507)
Q Consensus 16 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (507)
.+.-.||+.++-.-.-+ -|..++....++.+++..|.|..|+-.+.+...
T Consensus 12 s~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~lNT--------------------------- 61 (242)
T 3kae_A 12 SIRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLHKLNT--------------------------- 61 (242)
T ss_dssp HHHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHHTCCB---------------------------
T ss_pred HhhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHHhcch---------------------------
Confidence 34567888776543333 355557788899999999999999877654311
Q ss_pred HhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh----CC-------------chh-HHHHHHHHHHHhcCCHHHHHHHH
Q psy12000 96 LEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD----HK-------------DLL-ALNVYGAMCYYKLDYYDVSQEQV 157 (507)
Q Consensus 96 l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p-------------~~~-~~~~~la~~~~~~g~~~~A~~~~ 157 (507)
....+..+.+|.+.++|.+|+...+.++.. +| .+. -.+..+|.+.-..|+.++|+.++
T Consensus 62 ----~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~ 137 (242)
T 3kae_A 62 ----CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHY 137 (242)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHh
Confidence 011345567899999999999999999942 22 222 34566899999999999999999
Q ss_pred HHHHhcCCCcHHHHHH
Q psy12000 158 AMYLAQKPTSRIALNL 173 (507)
Q Consensus 158 ~~~l~~~p~~~~a~~~ 173 (507)
.......|-.+..-++
T Consensus 138 ~~Sf~~~~lf~~vEnl 153 (242)
T 3kae_A 138 VRSFGKSFLFSPVENL 153 (242)
T ss_dssp HHHHHHCCCHHHHHHH
T ss_pred hhhcCCccccchHHHH
Confidence 9998888877665443
No 238
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.73 E-value=0.55 Score=49.98 Aligned_cols=145 Identities=12% Similarity=0.031 Sum_probs=81.5
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHH
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLME 91 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (507)
+...+...|.++.|+...+ ++... .......|++++|.+.++...+
T Consensus 635 ~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~~~~~----------------------- 680 (814)
T 3mkq_A 635 IARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLTDESA----------------------- 680 (814)
T ss_dssp HHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHTTCCC-----------------------
T ss_pred HHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHHhhCc-----------------------
Confidence 4445556677777765542 22222 3345678999999888765421
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12000 92 YHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL 171 (507)
Q Consensus 92 ~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~ 171 (507)
+..+-.+|..+.+.|+++.|+.+|.++- + +-.+..++...|+.+...+..+.+.. ..+...|.
T Consensus 681 --------~~~W~~la~~al~~~~~~~A~~~y~~~~--d------~~~l~~l~~~~~~~~~~~~~~~~a~~-~~~~~~A~ 743 (814)
T 3mkq_A 681 --------EMKWRALGDASLQRFNFKLAIEAFTNAH--D------LESLFLLHSSFNNKEGLVTLAKDAET-TGKFNLAF 743 (814)
T ss_dssp --------HHHHHHHHHHHHHTTCHHHHHHHHHHHT--C------HHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred --------HhHHHHHHHHHHHcCCHHHHHHHHHHcc--C------hhhhHHHHHHcCCHHHHHHHHHHHHH-cCchHHHH
Confidence 1124567788888888888888888752 1 11233344445555544333322222 22222111
Q ss_pred HHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCC
Q psy12000 172 NLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSV 237 (507)
Q Consensus 172 ~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~ 237 (507)
.++++.|++++|++ +|.+.+++++|+.+.++..+..
T Consensus 744 ----~~~~~~g~~~~a~~--------------------------~~~~~~~~~~A~~lA~~~~~~~ 779 (814)
T 3mkq_A 744 ----NAYWIAGDIQGAKD--------------------------LLIKSQRFSEAAFLGSTYGLGD 779 (814)
T ss_dssp ----HHHHHHTCHHHHHH--------------------------HHHHTTCHHHHHHHHHHTTCCH
T ss_pred ----HHHHHcCCHHHHHH--------------------------HHHHcCChHHHHHHHHHhCCCh
Confidence 12334566666654 4556778888888888776654
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.60 E-value=0.25 Score=51.62 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=51.9
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12000 105 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY 160 (507)
Q Consensus 105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 160 (507)
..+..+..+|+|+-|+.+-++++...|+....|+.|+.||..+|+|+.|+-.++.+
T Consensus 342 ~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 342 IQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34666778999999999999999999999999999999999999999999998887
No 240
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.30 E-value=5.4 Score=40.79 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=47.9
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000 286 CMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQN 343 (507)
Q Consensus 286 ~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~ 343 (507)
+++....+.|+++.|...|+.+.......+.+.|++|.++..+|+.++|...|+++..
T Consensus 290 ~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 290 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4455556789999999999887654445567889999999999999999999999865
No 241
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.54 E-value=1.7 Score=36.35 Aligned_cols=48 Identities=13% Similarity=0.026 Sum_probs=39.1
Q ss_pred HHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000 290 SFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQ 342 (507)
Q Consensus 290 ~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~ 342 (507)
.....|+++.|.++.+.+ +++..+-.||.....+|+++-|+.+|.++-
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 345689999999987665 344566779999999999999999999874
No 242
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.51 E-value=5.5 Score=38.13 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=46.5
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCCc------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 105 CLASIHFLRCHYQEAIDIYKRILLDHKD------LLALNVYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
.+|.+|+..|+|.+|.+++.+++..... -.+++..-..+|..++++.++...+.++..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 6899999999999999999998875321 245666777888899999999888887753
No 243
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.72 E-value=0.31 Score=43.56 Aligned_cols=62 Identities=10% Similarity=-0.007 Sum_probs=57.8
Q ss_pred HHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12000 109 IHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA 170 (507)
Q Consensus 109 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a 170 (507)
...+.|..++|++....-++.+|.+.+.+..+-..++-.|+|+.|.+.++.+.+++|+....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 45677999999999999999999999999999999999999999999999999999998764
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.04 E-value=0.23 Score=51.86 Aligned_cols=56 Identities=23% Similarity=0.330 Sum_probs=52.1
Q ss_pred HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCC
Q psy12000 13 GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPP 68 (507)
Q Consensus 13 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~ 68 (507)
+..+...|+|+-|+++-++++...|..-..|+.++.||+.+|+|+.|+-.+.-+|-
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 56667789999999999999999999999999999999999999999999988873
No 245
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.07 E-value=18 Score=36.89 Aligned_cols=88 Identities=8% Similarity=-0.028 Sum_probs=51.4
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchh
Q psy12000 286 CMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAK 365 (507)
Q Consensus 286 ~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 365 (507)
.+|.-....+...++...+........++...-. ++....+.|+++.|..+|.++.... .....+.-|+|+++...|+
T Consensus 257 ~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~ 334 (618)
T 1qsa_A 257 IVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIER-RVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGR 334 (618)
T ss_dssp HHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHH-HHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCChHHHHHHHhccccCCChHHHHH-HHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCC
Confidence 3455555556455666666665443333333333 4334456799999999999875432 1222333467777777777
Q ss_pred hhHHHHHHHH
Q psy12000 366 TRLSFHLSHK 375 (507)
Q Consensus 366 ~~~A~~~~~~ 375 (507)
...|-.++.+
T Consensus 335 ~~~a~~~~~~ 344 (618)
T 1qsa_A 335 EAEAKEILHQ 344 (618)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776555544
No 246
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.61 E-value=1 Score=40.28 Aligned_cols=55 Identities=15% Similarity=0.061 Sum_probs=49.4
Q ss_pred HHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCC
Q psy12000 14 YCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPP 68 (507)
Q Consensus 14 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~ 68 (507)
...+..|+.++|++.....++.+|.+.+....+.+.+.-.|+++.|..-++.+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999987765543
No 247
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=89.45 E-value=3 Score=44.93 Aligned_cols=92 Identities=9% Similarity=-0.085 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHH-----hCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCcHHHHHHHh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILL-----DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA--QKPTSRIALNLKA 175 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~a~~~~a 175 (507)
+..+-..+.+.|+.++|.++|.++-. ..|+ ...|..+-..+.+.|+.++|.++|+++.. ..|+.. .|+.+.
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv-TYntLI 207 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL-SYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH-HHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH-HHHHHH
Confidence 56788899999999999999977543 2354 44566677889999999999999999875 457654 455554
Q ss_pred hhhhhccCh-HHHHHhhHHHHH
Q psy12000 176 CNTYKLFTS-RAAENQLKPILV 196 (507)
Q Consensus 176 ~~~~~~~~~-~~A~~~l~~~~~ 196 (507)
..+.+.|+. +.|...|+.+..
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHH
Confidence 556777774 678888888754
No 248
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=89.40 E-value=0.84 Score=49.04 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHH-HHHHHHHhhCC-HHHHHHHHHhhcc
Q psy12000 286 CMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNF-NFAQAKCALGQ-YKEAEEMFLLVQN 343 (507)
Q Consensus 286 ~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~-~lg~~~~~~g~-~~~A~~~~~~~~~ 343 (507)
.|...|.+.|+.++|+++|+.+....-.++.+.| .+-.++.+.|+ .++|.+.|+++..
T Consensus 170 tLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 170 AVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3445555555555555555555433322221222 23344555554 2445555555543
No 249
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=88.97 E-value=1.8 Score=43.01 Aligned_cols=69 Identities=13% Similarity=-0.159 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL 171 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~ 171 (507)
+..||.+..-...+..|..+|.+++...|++...++.||.+....|+.-+|+-+|-+.+....-.+.+.
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~ 223 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAS 223 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHH
Confidence 567999999999999999999999999999999999999999999999999999988886544455543
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.93 E-value=1.2 Score=42.88 Aligned_cols=59 Identities=12% Similarity=-0.020 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL 161 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 161 (507)
...++..+...|++++|+....+++..+|-+..++..+-.+++..|+..+|++.|+++-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34577788889999999999999999999999999999999999999999999988863
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.88 E-value=1.2 Score=43.45 Aligned_cols=58 Identities=21% Similarity=0.095 Sum_probs=34.0
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhhccHHHHHHHHHhC
Q psy12000 9 DAWLGYCHFHLGQYKQALGIYETLRHLPNP---PEDTEFNIASCYFYLGMYLQANQILEKV 66 (507)
Q Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~~ 66 (507)
...+|..|+..||+++|.+.|.++...... ..+.+....+++...+++..+...+.++
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344666666666666666666666543222 2255566666666666666666665554
No 252
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.73 E-value=7.7 Score=30.71 Aligned_cols=51 Identities=10% Similarity=-0.031 Sum_probs=41.3
Q ss_pred HhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhc
Q psy12000 406 RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ 456 (507)
Q Consensus 406 ~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~ 456 (507)
+|+-++--+.+..++..+|-++.+.+.+|.+|.++|+..+|.+.++++-+.
T Consensus 104 ~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 104 QGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp TTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 466666667777777777777889999999999999999999999998765
No 253
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=88.67 E-value=0.0014 Score=63.54 Aligned_cols=219 Identities=13% Similarity=0.070 Sum_probs=131.5
Q ss_pred hhHhHHHHHHHHHhhccHHHHHHHHHhc-CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhh
Q psy12000 206 IPESRLNLVIYHLKQEEHQEAFDLIKNL-EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGR 284 (507)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 284 (507)
.|++|..||.++++.++..+|++.+.+. +|++-...+.. . ...+.++.-+.+++.......++. +.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~---A-------~~~~~~edLv~yL~MaRk~~ke~~-ID-- 119 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQA---A-------NTSGNWEELVKYLQMARKKARESY-VE-- 119 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHH---T-------TTSSCCTTHHHHHHTTSTTCCSTT-TT--
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHH---H-------HhCCCHHHHHHHHHHHHHHhcccc-cH--
Confidence 4678999999999999999999988665 34433322111 0 112233445555554433222211 11
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccch
Q psy12000 285 QCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRA 364 (507)
Q Consensus 285 ~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 364 (507)
..|..+|.+.++..+=.+++ ..|+...+ -..|.=++..|.|+.|.-.|..+-+- +.|+.|+++.+
T Consensus 120 teLi~ayAk~~rL~elEefl-----~~~N~A~i-q~VGDrcf~e~lYeAAKilys~isN~---------akLAstLV~L~ 184 (624)
T 3lvg_A 120 TELIFALAKTNRLAELEEFI-----NGPNNAHI-QQVGDRCYDEKMYDAAKLLYNNVSNF---------GRLASTLVHLG 184 (624)
T ss_dssp HHHHHHHHTSCSSSTTTSTT-----SCCSSSCT-HHHHHHHHHSCCSTTSSTTGGGSCCC---------TTTSSSSSSCS
T ss_pred HHHHHHHHhhCcHHHHHHHH-----cCCCcccH-HHHHHHHHHccCHHHHHHHHHhCccH---------HHHHHHHHHHH
Confidence 14778888888865433221 23554433 44899999999999999988876332 23788999999
Q ss_pred hhhHHHHHHHHcCCcH---HHHHHHHHhhhcHHHH-H------------HHHHHHHhHhhHHHHHHHHHHHhhcCCchhh
Q psy12000 365 KTRLSFHLSHKLGDEK---SLMEYHQKLEDSLEEQ-L------------CLASIHFLRCHYQEAIDIYKRILLDHKDLLA 428 (507)
Q Consensus 365 ~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~-~------------~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~ 428 (507)
+++.|.+.+.|..... +.....-...+.--.+ + .+...|..+|.|++=|..++.++....-...
T Consensus 185 ~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmG 264 (624)
T 3lvg_A 185 EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 264 (624)
T ss_dssp GGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHH
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHH
Confidence 9999988777765432 1111110000000000 0 0111223458899999999999877766777
Q ss_pred hHHHHHhhccccccchhHHHHHHHH
Q psy12000 429 LNVYGAMCYYKLDYYDVSQEQVAMY 453 (507)
Q Consensus 429 ~~~~la~~y~~~g~~~~A~~~~~~~ 453 (507)
....||.+|.|= +.++-++.++.+
T Consensus 265 mFTELaILYsKY-~PeKlmEHlklf 288 (624)
T 3lvg_A 265 MFTELAILYSKF-KPQKMREHLELF 288 (624)
T ss_dssp HHHHHHHHHHSS-CTTHHHHHHTTS
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 777888877765 456666555543
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.54 E-value=0.78 Score=44.20 Aligned_cols=56 Identities=13% Similarity=0.047 Sum_probs=51.8
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhC
Q psy12000 11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV 66 (507)
Q Consensus 11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~ 66 (507)
.++..+...|++.+|+..+..++..+|.+..++..+..+++..|+..+|+..|+++
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999998764
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.25 E-value=20 Score=34.93 Aligned_cols=193 Identities=11% Similarity=0.048 Sum_probs=106.7
Q ss_pred hhcHHHHHHHHHHHHHhC------CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH--hhh-hh-hcc
Q psy12000 113 RCHYQEAIDIYKRILLDH------KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLK--ACN-TY-KLF 182 (507)
Q Consensus 113 ~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~--a~~-~~-~~~ 182 (507)
.|++++|++.+..+.+.. +....+...+..++...|+|+...+++..+.+.......+.... -++ +. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 477888888775554432 33456677788888889999888887776665554444332111 010 01 011
Q ss_pred ChHHHHHhhHHHHHhhCCCC--CCC-----hhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhcc
Q psy12000 183 TSRAAENQLKPILVSILPPL--IDV-----IPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDT 255 (507)
Q Consensus 183 ~~~~A~~~l~~~~~~~~~~~--~~~-----~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~ 255 (507)
+.+... ....+. .+... ... .......|+.+|...|++.+|.+.+..+... ..|
T Consensus 109 ~~d~~~--~~~~i~-~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~E-------------t~~--- 169 (445)
T 4b4t_P 109 SLDLNT--RISVIE-TIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVE-------------TYG--- 169 (445)
T ss_dssp TTHHHH--HHHHHH-CCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------HCS---
T ss_pred chhHHH--HHHHHH-HHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-------------HHh---
Confidence 111100 001111 00000 011 1234467899999999999999988765100 000
Q ss_pred CcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhh-h--cCCCc----hHHHHHHHHHHhh
Q psy12000 256 GSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKS-Y--YTSDD----SFNFNFAQAKCAL 328 (507)
Q Consensus 256 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~-~--~~~~~----~~~~~lg~~~~~~ 328 (507)
....-.+.+- .......+...+++.+|..+++++.. . .+.++ .+....|..+...
T Consensus 170 -~~~~~~kve~-----------------~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e 231 (445)
T 4b4t_P 170 -SMEMSEKIQF-----------------ILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHK 231 (445)
T ss_dssp -SSCHHHHHHH-----------------HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHH-----------------HHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHh
Confidence 0000011110 11235667788899999888887642 1 12222 3344568888889
Q ss_pred CCHHHHHHHHHhhc
Q psy12000 329 GQYKEAEEMFLLVQ 342 (507)
Q Consensus 329 g~~~~A~~~~~~~~ 342 (507)
++|.+|-.+|..+.
T Consensus 232 ~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 232 REYLEVAQYLQEIY 245 (445)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999998875
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.94 E-value=2.9 Score=40.81 Aligned_cols=91 Identities=8% Similarity=-0.118 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCC---chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCcHHHH----HH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHK---DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK--PTSRIAL----NL 173 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~a~----~~ 173 (507)
...+|..|+..|++++|.++|.++..... .-.+++..+..+++..++|..+...++++.... ..++... ..
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~ 213 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY 213 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence 67899999999999999999999887653 346788888899999999999999999985431 1122111 11
Q ss_pred HhhhhhhccChHHHHHhhHH
Q psy12000 174 KACNTYKLFTSRAAENQLKP 193 (507)
Q Consensus 174 ~a~~~~~~~~~~~A~~~l~~ 193 (507)
.|.+++..++|..|...|-.
T Consensus 214 ~gl~~l~~r~f~~Aa~~f~e 233 (429)
T 4b4t_R 214 YGIHCLAVRNFKEAAKLLVD 233 (429)
T ss_dssp HHHGGGGTSCHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHH
Confidence 23344455566665554443
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.98 E-value=2.1 Score=47.65 Aligned_cols=123 Identities=9% Similarity=-0.123 Sum_probs=74.7
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCC-----------------
Q psy12000 106 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA---QKP----------------- 165 (507)
Q Consensus 106 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~p----------------- 165 (507)
+.......|.++-|.+ .+...|.++...+.+|.++...|++++|.++|+++-. .+.
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 4444556666665543 5567788888889999999999999999999988631 100
Q ss_pred -Cc-HHHHHH-HhhhhhhccChHHHHHhhHHHHHhhCCCCCCC-hhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000 166 -TS-RIALNL-KACNTYKLFTSRAAENQLKPILVSILPPLIDV-IPESRLNLVIYHLKQEEHQEAFDLIKNL 233 (507)
Q Consensus 166 -~~-~~a~~~-~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~l~~~ 233 (507)
.. ...++. ...+..+.+.++.+...-..+++ .....++. ....|.++-..++..|+|++|...+...
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~-~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA-SKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHH-HCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 00 011222 23343444555555543333332 22111111 2235677778899999999998888654
No 258
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.29 E-value=1.9 Score=42.22 Aligned_cols=102 Identities=20% Similarity=0.083 Sum_probs=70.7
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhcC-CC-C----ChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhc
Q psy12000 10 AWLGYCHFHLGQYKQALGIYETLRHL-PN-P----PEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKL 83 (507)
Q Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~~l~~-~p-~----~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~ 83 (507)
..++..+...|++.+|...++.+... .. . ..+++....+++...+++..|...++++....... .
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~---------~ 211 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN---------P 211 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS---------S
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc---------C
Confidence 45899999999999999999988642 11 1 13677888999999999999998887752100000 0
Q ss_pred CChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy12000 84 GDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH 130 (507)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 130 (507)
....+. ..-+...|.++...++|.+|-.+|.+++...
T Consensus 212 -~~~~lk---------~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 212 -KYESLK---------LEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp -CCHHHH---------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred -CcHHHH---------HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 000000 0014567889999999999999999987643
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.84 E-value=22 Score=32.95 Aligned_cols=42 Identities=17% Similarity=0.317 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHH
Q psy12000 298 KDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFL 339 (507)
Q Consensus 298 ~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 339 (507)
++|+.+-.+.-...-.++..+..+|..|.+.|++.+|..+|-
T Consensus 119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 344444433222223467888889999999999999999994
No 260
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=84.59 E-value=0.00088 Score=64.92 Aligned_cols=145 Identities=12% Similarity=0.004 Sum_probs=78.3
Q ss_pred CChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHH
Q psy12000 38 PPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQ 117 (507)
Q Consensus 38 ~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~ 117 (507)
+.+++|..+|..+...|...+|++.|-++.+..... -....+. ..|.|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~-eVi~~A~------------------------------~~~~~e 100 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYM-EVVQAAN------------------------------TSGNWE 100 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSS-HHHHHTT------------------------------TSSCCT
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhCCChHHHH-HHHHHHH------------------------------hCCCHH
Confidence 456899999999999999999999888875532211 1122222 233444
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHh
Q psy12000 118 EAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVS 197 (507)
Q Consensus 118 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~ 197 (507)
+=+.+++.+-+. -..+.+-..|..||.++|+..+-.+.+ ..|+... ....|.-.+..|.++.|.-.|..+
T Consensus 101 dLv~yL~MaRk~-~ke~~IDteLi~ayAk~~rL~elEefl-----~~~N~A~-iq~VGDrcf~e~lYeAAKilys~i--- 170 (624)
T 3lvg_A 101 ELVKYLQMARKK-ARESYVETELIFALAKTNRLAELEEFI-----NGPNNAH-IQQVGDRCYDEKMYDAAKLLYNNV--- 170 (624)
T ss_dssp THHHHHHTTSTT-CCSTTTTHHHHHHHHTSCSSSTTTSTT-----SCCSSSC-THHHHHHHHHSCCSTTSSTTGGGS---
T ss_pred HHHHHHHHHHHH-hcccccHHHHHHHHHhhCcHHHHHHHH-----cCCCccc-HHHHHHHHHHccCHHHHHHHHHhC---
Confidence 444443333222 222233344566777777655433322 1233322 122333445556666665444332
Q ss_pred hCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000 198 ILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL 233 (507)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~ 233 (507)
..+..|+..+...|+|+.|++..++.
T Consensus 171 ----------sN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 171 ----------SNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp ----------CCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred ----------ccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12345566667777777777766654
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.49 E-value=7.4 Score=43.24 Aligned_cols=139 Identities=13% Similarity=0.023 Sum_probs=84.1
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHH
Q psy12000 11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLM 90 (507)
Q Consensus 11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (507)
++.......+.++-|... +.-.|.++...+.+|+++...|++++|..+|+++...-...... ........
T Consensus 817 ~l~~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l------~~~~~~~~ 886 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ------FAVLREFQ 886 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCS------CSSHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchh------hhhhcccc
Confidence 455566677777665543 23346666667999999999999999999999985321110000 00000000
Q ss_pred HHHHHHh---hcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC-chh----HHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12000 91 EYHQKLE---DSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK-DLL----ALNVYGAMCYYKLDYYDVSQEQVAM 159 (507)
Q Consensus 91 ~~~~~l~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~----~~~~~la~~~~~~g~~~~A~~~~~~ 159 (507)
....... ..+.-++.+..++.+.|-++.+++.-+.+|+..+ +.. ..+.++=..+..+|+|++|...+..
T Consensus 887 ~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 887 EIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 0000000 0011145667788888999999998888887653 222 2456666778888888888776543
No 262
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=77.96 E-value=2.3 Score=31.23 Aligned_cols=49 Identities=20% Similarity=0.110 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhcCCCchhh--hhHHHhhhhhcCChHHHHHHHHHHHHhCCCC-ccCCC
Q psy12000 445 VSQEQVAMYLAQKPTSRIA--LNLKACNTYKLFTSRAAENQLKPILVSAGPR-VRFPP 499 (507)
Q Consensus 445 ~A~~~~~~~l~~~P~~~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 499 (507)
.|++.|..+++..||...- +..+..-++ .+|+. ++..++..+.+ ...|+
T Consensus 40 ~Aie~l~~alk~e~~~~~k~~l~~K~~eYl-----~RAE~-LK~~l~~~~~~g~~~~~ 91 (93)
T 1wfd_A 40 EGIDMLLQVLKGTKESSKRCVLRTKISGYM-----DRAEN-IKKYLDQEKEDGKSGPS 91 (93)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHTCCSSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----HHHHH-HHHHHhccccCCCCCCC
Confidence 3444455555555554432 223333333 55555 66666655543 44443
No 263
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=77.44 E-value=82 Score=33.81 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=18.3
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHH
Q psy12000 9 DAWLGYCHFHLGQYKQALGIYETL 32 (507)
Q Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~~ 32 (507)
.+.+..+||.+|+|++|+++--.+
T Consensus 73 alvaSkvyy~Lg~~~~al~yaL~a 96 (963)
T 4ady_A 73 ALIASKVYYNLGEYESAVKYALAA 96 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHheeccchHHHHHHHHhC
Confidence 445678888899999888876654
No 264
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=75.19 E-value=6.2 Score=39.09 Aligned_cols=71 Identities=13% Similarity=-0.168 Sum_probs=58.1
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHH
Q psy12000 397 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLK 467 (507)
Q Consensus 397 ~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~ 467 (507)
.++|.+...+..+..|..+|.++....|++...+..+|.+....|+.=+|+=.|-+++...+-.+.+...+
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL 226 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL 226 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHH
Confidence 45777888888899999999999999999999999999999999998888888777776544455554433
No 265
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=74.98 E-value=10 Score=30.01 Aligned_cols=61 Identities=11% Similarity=0.012 Sum_probs=49.3
Q ss_pred HHHHH-HHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000 103 QLCLA-SIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ 163 (507)
Q Consensus 103 ~~~la-~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 163 (507)
+..+| .+...+|+-++--+++..++..+|-++++.+.+|.+|-+.|+..+|.+++.++-+.
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 44444 35567899999999999988778888999999999999999999999999887644
No 266
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.70 E-value=2.6 Score=41.64 Aligned_cols=137 Identities=11% Similarity=-0.043 Sum_probs=53.1
Q ss_pred HHhhcCHHHHHHHHHHHhc---C--------CCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHh--
Q psy12000 16 HFHLGQYKQALGIYETLRH---L--------PNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHK-- 82 (507)
Q Consensus 16 ~~~~g~~~~A~~~~~~~l~---~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~-- 82 (507)
.+..++|++|.++-..+.. . ++-.+.+|++.+.++-..|+..+......... ..+..+..+.+
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~----~ir~~Ll~~~rta 221 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNI----ILRSTMMKFLKIA 221 (523)
T ss_dssp ---------------------------------------------------------CHHHHH----HHHTHHHHHHHHC
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchh----hHHHHHHHHHHHH
Confidence 4467888888887765541 1 33345678888887777776655322111000 00000000000
Q ss_pred -c-CChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch-------hHHHHHHHHHHHhcCCHHHH
Q psy12000 83 -L-GDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL-------LALNVYGAMCYYKLDYYDVS 153 (507)
Q Consensus 83 -~-~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A 153 (507)
+ .+...-. ..+..+-..|...+.|+.|..+..+.. .|.+ ...+|.+|.++.-.++|.+|
T Consensus 222 ~lr~D~~~qa----------~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA 289 (523)
T 4b4t_S 222 SLKHDNETKA----------MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTA 289 (523)
T ss_dssp CSCSSSCHHH----------HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hcccCcchhH----------HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHH
Confidence 0 0110000 013445677888899999999999874 4422 34567789999999999999
Q ss_pred HHHHHHHHhcCCCcH
Q psy12000 154 QEQVAMYLAQKPTSR 168 (507)
Q Consensus 154 ~~~~~~~l~~~p~~~ 168 (507)
.+.+..++..-|.+.
T Consensus 290 ~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 290 NEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHhCCcch
Confidence 999999998776553
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=68.80 E-value=40 Score=30.88 Aligned_cols=116 Identities=12% Similarity=0.083 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHhc--------CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCccccc
Q psy12000 208 ESRLNLVIYHLKQEEHQEAFDLIKNL--------EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECD 279 (507)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~A~~~l~~~--------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~ 279 (507)
+-+..++.=|.++++|++|++++... ...+..+....-.--..........+...+..++++..+.......
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~ 113 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLK 113 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHH
Q ss_pred chhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHH
Q psy12000 280 TVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMF 338 (507)
Q Consensus 280 ~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 338 (507)
.. .++|+.+-.+.-...-.++..+..+|..|.+.|++.+|..+|
T Consensus 114 ~f---------------i~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 114 DV---------------ITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HH---------------HHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HH---------------HHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
No 268
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=56.83 E-value=74 Score=27.17 Aligned_cols=97 Identities=16% Similarity=0.068 Sum_probs=46.4
Q ss_pred HHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccch---------hHHHHHHHHHhcCCCchhhhhHHHhhhh
Q psy12000 402 IHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYD---------VSQEQVAMYLAQKPTSRIALNLKACNTY 472 (507)
Q Consensus 402 ~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~---------~A~~~~~~~l~~~P~~~~a~~~~~~~~~ 472 (507)
+....|.|++|..++++....+|.+-.+...|..+-.+.+-+. .-++-..++++.+-+.+.. .++-...-
T Consensus 123 VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~lqnFSy~~~~~ki~~fve~~~~~a~~-FLL~~A~K 201 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVIQNFSYETFQQKMLRFLESHLDDAEP-YLLTMAKK 201 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHHHHTCCHHHHHHHHHHHHHTTSCCCCC-HHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHHHHhccHHHHHHHHHHHHHHHhcccch-HHHHHHHH
Confidence 4455789999999999999988877777776766666655443 3344555666666555444 22222222
Q ss_pred hcCChHHHHHHHHHHHHhCCCCccCCC
Q psy12000 473 KLFTSRAAENQLKPILVSAGPRVRFPP 499 (507)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (507)
.++.-..+...-++=.+.+|+.++-||
T Consensus 202 v~ks~~~~~~~~~~~~~~~~~~~~~~~ 228 (235)
T 3bu8_A 202 ALKSESAASSTGKEDKQPAPGPVEKPP 228 (235)
T ss_dssp HTTTC----------------------
T ss_pred HHhhcccccCCcccccccCCCcccCCc
Confidence 233333333344555667777766655
No 269
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=55.63 E-value=9.8 Score=27.12 Aligned_cols=13 Identities=8% Similarity=-0.210 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhh
Q psy12000 409 YQEAIDIYKRILL 421 (507)
Q Consensus 409 ~~~Ai~~~~~~l~ 421 (507)
.++|+++.+++++
T Consensus 16 ~~~Ai~lv~~Ave 28 (83)
T 2w2u_A 16 EEMARKYAINAVK 28 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4667777777755
No 270
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=53.49 E-value=11 Score=26.84 Aligned_cols=13 Identities=8% Similarity=-0.294 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhh
Q psy12000 409 YQEAIDIYKRILL 421 (507)
Q Consensus 409 ~~~Ai~~~~~~l~ 421 (507)
.++|+++.+++++
T Consensus 8 ~~~Ai~lv~~Ave 20 (83)
T 2v6y_A 8 EDMARKYAILAVK 20 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3567777777755
No 271
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=53.25 E-value=27 Score=25.03 Aligned_cols=11 Identities=27% Similarity=0.622 Sum_probs=4.4
Q ss_pred hhHHHHHHHHH
Q psy12000 407 CHYQEAIDIYK 417 (507)
Q Consensus 407 ~~~~~Ai~~~~ 417 (507)
|+|++|+.+|.
T Consensus 30 g~y~eAl~lY~ 40 (86)
T 4a5x_A 30 SRYPQALVCYQ 40 (86)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 33444444333
No 272
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=52.52 E-value=7 Score=27.45 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=10.1
Q ss_pred HHHHHHHhhccHHHHHHHHHh
Q psy12000 45 NIASCYFYLGMYLQANQILEK 65 (507)
Q Consensus 45 ~la~~~~~~g~~~eA~~~~~~ 65 (507)
.+|+-+...|+|+.|+.+|+.
T Consensus 17 k~ARe~Al~GnYdta~~yY~g 37 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQG 37 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHH
Confidence 344444445555555544443
No 273
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=49.29 E-value=43 Score=23.09 Aligned_cols=33 Identities=9% Similarity=0.127 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLA 135 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 135 (507)
...+|..+...|++++|+..|-+++..+|.-.+
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 457899999999999999999999999886544
No 274
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.50 E-value=25 Score=34.77 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHhCCCCc--cccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHH
Q psy12000 41 DTEFNIASCYFYLGMYLQANQILEKVPPSR--AKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQE 118 (507)
Q Consensus 41 ~~~~~la~~~~~~g~~~eA~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~ 118 (507)
.++..+-+.|...+.++.|..+..++.-.. ..+.- . ..+ ++.+|.++..+++|.+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q---~-~rY-------------------~YY~GRI~a~q~~Y~e 288 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSL---E-ARY-------------------FFYLSKINAIQLDYST 288 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHH---H-HHH-------------------HHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHH---H-HHH-------------------HHHHHHHHHHhccHHH
Confidence 567889999999999999999998874211 11100 0 011 5679999999999999
Q ss_pred HHHHHHHHHHhCCch
Q psy12000 119 AIDIYKRILLDHKDL 133 (507)
Q Consensus 119 A~~~~~~~l~~~p~~ 133 (507)
|.+.+..++...|.+
T Consensus 289 A~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 289 ANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHhCCcc
Confidence 999999999988754
No 275
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=47.77 E-value=29 Score=26.54 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhh
Q psy12000 409 YQEAIDIYKRILL 421 (507)
Q Consensus 409 ~~~Ai~~~~~~l~ 421 (507)
.++|+.++.++++
T Consensus 15 l~kAi~lv~~Ave 27 (117)
T 2cpt_A 15 LQKAIDLASKAAQ 27 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455665555543
No 276
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=47.47 E-value=39 Score=23.31 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=23.9
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCCChhh
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDT 42 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 42 (507)
+|..+...|++++|+..|-+++...|...+.
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 6778888888888888888888887776543
No 277
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=46.56 E-value=26 Score=29.89 Aligned_cols=29 Identities=14% Similarity=0.027 Sum_probs=16.8
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhcCCCC
Q psy12000 10 AWLGYCHFHLGQYKQALGIYETLRHLPNP 38 (507)
Q Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~ 38 (507)
+++|..+...++|.+|.+.+..+++..|.
T Consensus 18 YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 18 YYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 44566666666666666666666555554
No 278
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=46.36 E-value=20 Score=25.10 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLD 129 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 129 (507)
...+|.-|...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456788888888888888888887743
No 279
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.86 E-value=3e+02 Score=29.68 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=41.1
Q ss_pred HHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000 287 MASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQ 342 (507)
Q Consensus 287 la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~ 342 (507)
+...+...|.++-|.+ .....|.++...|.+|.+|...|++++|..+|+++-
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5566677788876554 445566777777889999999999999999999974
No 280
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=41.81 E-value=3.6e+02 Score=28.97 Aligned_cols=193 Identities=11% Similarity=0.064 Sum_probs=86.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCcH--H--HHHHHhhhhhhccChHHHHHhhHHHHHhhCCCC-----CCCh
Q psy12000 137 NVYGAMCYYKLDYYDVSQEQVAMYLAQK-PTSR--I--ALNLKACNTYKLFTSRAAENQLKPILVSILPPL-----IDVI 206 (507)
Q Consensus 137 ~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~--~--a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~-----~~~~ 206 (507)
...+|.+ ..|+.++++..+...+-.. .+++ . +.+-+|.++ .|..+++...+...+...-... ....
T Consensus 379 ~aSLGlI--h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~--ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir 454 (963)
T 4ady_A 379 TASLGVI--HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIY--AGFGRDTTDYLKNIIVENSGTSGDEDVDVLL 454 (963)
T ss_dssp HHHHHHH--TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHT--TTTTHHHHHHHHHHHHHHSSCCSCHHHHHHH
T ss_pred HHHhhhh--ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHcCccccccccccHHHH
Confidence 3344444 4577778888888777532 2222 2 344444443 3444456665655432100000 0011
Q ss_pred hHhHHHHHHHHHhhccHHHHHHHHHhc-CCCChHHH--HHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhh
Q psy12000 207 PESRLNLVIYHLKQEEHQEAFDLIKNL-EPSVPQEY--ILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPG 283 (507)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~A~~~l~~~-~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 283 (507)
..+-+.||.++.-+++- ++++.+..+ ...++... ...+..+...|.. .....+.-+.+.. +.. .+.+.-
T Consensus 455 ~gAaLGLGla~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTg--n~~ai~~LL~~~~---e~~--~e~vrR 526 (963)
T 4ady_A 455 HGASLGIGLAAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTG--KPEAIHDMFTYSQ---ETQ--HGNITR 526 (963)
T ss_dssp HHHHHHHHHHSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHH---HCS--CHHHHH
T ss_pred HHHHHHHHHHhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC--CHHHHHHHHHHHh---ccC--cHHHHH
Confidence 13456778887777663 455555443 22222111 1122222223322 2223332222221 111 111111
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc----hHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000 284 RQCMASSFFLLRSFKDVILYLSSIKSYYTSDD----SFNFNFAQAKCALGQYKEAEEMFLLVQN 343 (507)
Q Consensus 284 ~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~~~~ 343 (507)
...+|..+...|+.+.+-.+.+.+... + ++ ...+-+|.+|...|+...-...+..+.+
T Consensus 527 ~aalgLGll~~g~~e~~~~li~~L~~~-~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 527 GLAVGLALINYGRQELADDLITKMLAS-D-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHHHHHHHHTTTCGGGGHHHHHHHHHC-S-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhCCChHHHHHHHHHHHhC-C-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 122344444556666555555554432 2 22 2234478888899996555556666653
No 281
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=39.76 E-value=55 Score=27.76 Aligned_cols=31 Identities=3% Similarity=0.073 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCch
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDL 133 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 133 (507)
.+.+|.++..+++|.+|.+.+.+++...|..
T Consensus 17 ~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 17 KYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 5667888888888888888888888777754
No 282
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=39.23 E-value=38 Score=24.03 Aligned_cols=25 Identities=24% Similarity=0.094 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRIL 127 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l 127 (507)
+...|.-.-..|+|++|+.+|.+++
T Consensus 22 lv~~Ave~D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445556667777777777776665
No 283
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=38.06 E-value=61 Score=23.11 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=29.1
Q ss_pred HHHHHhHhhHHHHHHHHHHHhh--cCCchhhhH-HHHHhhcc
Q psy12000 400 ASIHFLRCHYQEAIDIYKRILL--DHKDLLALN-VYGAMCYY 438 (507)
Q Consensus 400 ~~~~~~~~~~~~Ai~~~~~~l~--~~p~~~~~~-~~la~~y~ 438 (507)
+.-.|..++|.+|...|+++.. .+|....+. ++++.|--
T Consensus 60 ak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~k 101 (106)
T 2vkj_A 60 GKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECRK 101 (106)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHHH
Confidence 4556777999999999999974 566666655 77777643
No 284
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=37.07 E-value=70 Score=23.31 Aligned_cols=33 Identities=9% Similarity=0.127 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhH
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLA 135 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 135 (507)
...+|..+..+|+++.|+.+|-+++..+|.-.+
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 457899999999999999999999988876544
No 285
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=36.90 E-value=43 Score=23.72 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=12.8
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHH
Q psy12000 105 CLASIHFLRCHYQEAIDIYKRIL 127 (507)
Q Consensus 105 ~la~~~~~~g~~~~A~~~~~~~l 127 (507)
..|.-.-+.|+|++|+.+|.+++
T Consensus 16 ~~Ave~D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 16 ILAVKADKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 34444555666666666665544
No 286
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=36.49 E-value=46 Score=24.04 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHH
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRIL 127 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l 127 (507)
-..+..+...|+|++||++.+++.
T Consensus 19 ~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHH
Confidence 356778888999999999888764
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=36.36 E-value=1.7e+02 Score=23.77 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCC--chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000 117 QEAIDIYKRILLDHK--DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 164 (507)
Q Consensus 117 ~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 164 (507)
+.+.++|..+....= .....|..-|..+...|++.+|.++|+..+...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 335556666555442 333444445556666677777777777666544
No 288
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.67 E-value=4.5e+02 Score=28.28 Aligned_cols=107 Identities=15% Similarity=0.048 Sum_probs=65.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCc--cc-cchHHHHHHhcCChh
Q psy12000 11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSR--AK-TRLSFHLSHKLGDEK 87 (507)
Q Consensus 11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~ 87 (507)
.+...+...|.++-|. +++.-.|.++-.-|.+|+++...|++++|..+|+++...- .. .... ..
T Consensus 815 ~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~---------~~ 881 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV---------LR 881 (950)
T ss_dssp HHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGG---------GH
T ss_pred HHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccc---------hh
Confidence 3556667778877554 3556667777777899999999999999999999985311 10 0000 00
Q ss_pred HHHHHHHHHhh-c--HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy12000 88 SLMEYHQKLED-S--LEEQLCLASIHFLRCHYQEAIDIYKRILLDH 130 (507)
Q Consensus 88 ~~~~~~~~l~~-~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 130 (507)
........... . ..=++....++...+-++-+++.-+.+|+.-
T Consensus 882 ~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 882 EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp HHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 00000000000 0 0114566777777888888888888877643
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.38 E-value=1.7e+02 Score=23.49 Aligned_cols=45 Identities=4% Similarity=-0.159 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhCC--chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000 119 AIDIYKRILLDHK--DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ 163 (507)
Q Consensus 119 A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 163 (507)
+.++|.-+....= .....|-.-|..+...|++.+|.++|+..++.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4455544443332 22333333444555555555555555555543
No 290
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=34.16 E-value=78 Score=22.58 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHh--CCchhHHH-HHHHHHHHh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLD--HKDLLALN-VYGAMCYYK 146 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~-~~la~~~~~ 146 (507)
.+.-|.-++..++|.+|...|+++... +|+-..++ +.++.|--+
T Consensus 56 ~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~kk 102 (106)
T 2vkj_A 56 LIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECRKK 102 (106)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999998744 34444444 666666543
No 291
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=32.86 E-value=29 Score=25.05 Aligned_cols=23 Identities=9% Similarity=-0.158 Sum_probs=11.9
Q ss_pred HHHhhccccccchhHHHHHHHHH
Q psy12000 432 YGAMCYYKLDYYDVSQEQVAMYL 454 (507)
Q Consensus 432 ~la~~y~~~g~~~~A~~~~~~~l 454 (507)
..|..+.+.|+||+|+++.+++.
T Consensus 20 RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHH
Confidence 34445555555555555544443
No 292
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=31.64 E-value=2e+02 Score=23.14 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=18.7
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHH
Q psy12000 397 LCLASIHFLRCHYQEAIDIYKRI 419 (507)
Q Consensus 397 ~~l~~~~~~~~~~~~Ai~~~~~~ 419 (507)
..+-||+..+|++++|+++-+.+
T Consensus 77 yL~YWIyiGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 77 YMLYWIYIGRSQSEEALELARTI 99 (161)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHhc
Confidence 33458999999999999988876
No 293
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=31.43 E-value=1.8e+02 Score=24.53 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=36.4
Q ss_pred cCHHHHHHHHHHhh--hhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhccc
Q psy12000 295 RSFKDVILYLSSIK--SYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNE 344 (507)
Q Consensus 295 ~~~~~Ai~~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~ 344 (507)
+...++.++|.-+. .++.....++-.-|..+...|++.+|.++|+..+..
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 44667888777654 344455555555788999999999999999987643
No 294
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=31.12 E-value=60 Score=23.13 Aligned_cols=25 Identities=20% Similarity=0.066 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHH
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRILL 128 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l~ 128 (507)
...|.-.-..|+|++|+.+|.++++
T Consensus 20 v~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 20 LKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555667777777777777653
No 295
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=30.28 E-value=48 Score=32.25 Aligned_cols=63 Identities=13% Similarity=-0.019 Sum_probs=50.7
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCC----------chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCc
Q psy12000 105 CLASIHFLRCHYQEAIDIYKRILLDHK----------DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ-KPTS 167 (507)
Q Consensus 105 ~la~~~~~~g~~~~A~~~~~~~l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~ 167 (507)
.+-.+|++.++..-+..+++.+-...+ .....+|.+|.+++..++|.+|.+.+..++.. -|..
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 455799999999999999987655432 23467789999999999999999999999987 5543
No 296
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.95 E-value=1.8e+02 Score=23.57 Aligned_cols=59 Identities=10% Similarity=-0.015 Sum_probs=44.2
Q ss_pred hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCC--h-hhHH------HHHHHHHhhccHHHHHHHHHhC
Q psy12000 8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPP--E-DTEF------NIASCYFYLGMYLQANQILEKV 66 (507)
Q Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~--~-~~~~------~la~~~~~~g~~~eA~~~~~~~ 66 (507)
..+.-|..+|..|+|=+|-+.++.+-...+.. . ..|. ..|......|+..-|...+.++
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34667888999999999999999998876554 2 2332 2333556789999999988776
No 297
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.54 E-value=2.1e+02 Score=23.12 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCch---hH-----HH-HHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDL---LA-----LN-VYGAMCYYKLDYYDVSQEQVAMYLA 162 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~-----~~-~~la~~~~~~g~~~~A~~~~~~~l~ 162 (507)
-+.-|..++..|+|=+|=++++.+-...+.. .. +. ...|..+.+.|+...|..++.+++.
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566778888999999999999987775432 22 22 3334456778999999998888764
No 298
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=28.65 E-value=1.1e+02 Score=19.67 Aligned_cols=41 Identities=7% Similarity=0.032 Sum_probs=18.3
Q ss_pred cCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHH
Q psy12000 295 RSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAE 335 (507)
Q Consensus 295 ~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 335 (507)
...++|..+-+...........+..-+...+..+|+|++|+
T Consensus 20 HcH~EA~tIA~~L~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 20 HCHQEAASIADWLAQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp TCHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHC-------
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 35666665555444333223334444677788888888875
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=28.34 E-value=2.1e+02 Score=24.54 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCC--chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000 117 QEAIDIYKRILLDHK--DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ 163 (507)
Q Consensus 117 ~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 163 (507)
+++.++|.-+....= .....|-.-|..+...|++.+|.++|+..++.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 345555555554432 23333334455555666666666666666554
No 300
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.10 E-value=1.4e+02 Score=25.16 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=21.8
Q ss_pred HHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHH
Q psy12000 401 SIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGA 434 (507)
Q Consensus 401 ~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la 434 (507)
.+....|.|++|..++++....+|.+..+...|.
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~ 158 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLL 158 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCTTHHHHH
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 3555679999999999999988877766544443
No 301
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.56 E-value=76 Score=24.07 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=12.9
Q ss_pred HhhHHHHHHHHHHHhhcC
Q psy12000 406 RCHYQEAIDIYKRILLDH 423 (507)
Q Consensus 406 ~~~~~~Ai~~~~~~l~~~ 423 (507)
+..|++|..+..++|..+
T Consensus 16 k~~h~~AF~~Is~AL~~D 33 (116)
T 2dl1_A 16 REAYKKAFLFVNKGLNTD 33 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 356788888888887654
No 302
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=25.53 E-value=51 Score=32.06 Aligned_cols=58 Identities=9% Similarity=-0.007 Sum_probs=45.7
Q ss_pred HHHHHHhhcCHHHHHHHHHHhhhhcC--CC--------chHHHHHHHHHHhhCCHHHHHHHHHhhccc
Q psy12000 287 MASSFFLLRSFKDVILYLSSIKSYYT--SD--------DSFNFNFAQAKCALGQYKEAEEMFLLVQNE 344 (507)
Q Consensus 287 la~~~~~~~~~~~Ai~~~~~~~~~~~--~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~ 344 (507)
|-.+|++.++..-+-.+++.+....+ .. ..+.|.+|..++.+++|.+|.+++..+...
T Consensus 182 L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 182 LNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 45789999999999888887654322 11 256788999999999999999999988654
No 303
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=25.44 E-value=1e+02 Score=31.66 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC
Q psy12000 103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY 149 (507)
Q Consensus 103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 149 (507)
.+..|...+..|+|.-|.++.+.++..+|++.++...+|.+|.++|.
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 55667777778888888888888888888888887777777777663
No 304
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=25.44 E-value=85 Score=22.13 Aligned_cols=24 Identities=25% Similarity=0.005 Sum_probs=14.5
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHH
Q psy12000 105 CLASIHFLRCHYQEAIDIYKRILL 128 (507)
Q Consensus 105 ~la~~~~~~g~~~~A~~~~~~~l~ 128 (507)
..|.-.-..|+|++|+.+|.++++
T Consensus 18 ~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 18 QKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445566777777777666553
No 305
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=25.26 E-value=85 Score=22.70 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHH
Q psy12000 104 LCLASIHFLRCHYQEAIDIYKRIL 127 (507)
Q Consensus 104 ~~la~~~~~~g~~~~A~~~~~~~l 127 (507)
...|.-.-..|+|++|+.+|.+++
T Consensus 19 v~~Ave~D~~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 19 LKRAVELDAESRYQQALVCYQEGI 42 (93)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344555566677777766666654
No 306
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=24.15 E-value=2.8e+02 Score=22.36 Aligned_cols=17 Identities=12% Similarity=0.018 Sum_probs=7.6
Q ss_pred HHHhcCCHHHHHHHHHH
Q psy12000 143 CYYKLDYYDVSQEQVAM 159 (507)
Q Consensus 143 ~~~~~g~~~~A~~~~~~ 159 (507)
+|+..|++++|+.+-+.
T Consensus 82 IyiGRg~~~eAlDiA~~ 98 (161)
T 2ynq_A 82 IYIGRSQSEEALELART 98 (161)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHcCCchHHHHHHHHh
Confidence 33344555555444333
No 307
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=24.11 E-value=82 Score=32.38 Aligned_cols=49 Identities=12% Similarity=0.038 Sum_probs=42.5
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHH
Q psy12000 9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYL 57 (507)
Q Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 57 (507)
-+..|...+..|+|.-|.+..+.++..+|++.++...++.+|.++|.-.
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 3446788899999999999999999999999999999999887777554
No 308
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=23.64 E-value=59 Score=23.72 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=18.9
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcCCCCC
Q psy12000 12 LGYCHFHLGQYKQALGIYETLRHLPNPP 39 (507)
Q Consensus 12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~ 39 (507)
+|..+...|+++.|+..|-+++...|..
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 5777777777777777666666655543
No 309
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.96 E-value=4.4e+02 Score=24.08 Aligned_cols=39 Identities=10% Similarity=-0.073 Sum_probs=26.9
Q ss_pred CchhHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000 131 KDLLALNVYGAM-CYYKLDYYDVSQEQVAMYLAQKPTSRI 169 (507)
Q Consensus 131 p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~l~~~p~~~~ 169 (507)
|.+...-...|+ ..++.++|..|-...+++++..|....
T Consensus 203 p~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~ 242 (325)
T 3mv2_A 203 PIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPR 242 (325)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHH
Confidence 333333333333 567889999999999999998886554
No 310
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=22.78 E-value=70 Score=22.95 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=13.6
Q ss_pred HhhHHHHHHHHHHHhhcC
Q psy12000 406 RCHYQEAIDIYKRILLDH 423 (507)
Q Consensus 406 ~~~~~~Ai~~~~~~l~~~ 423 (507)
+..|++|..+..++|..+
T Consensus 10 k~~h~~AF~~Is~aL~~D 27 (89)
T 3eab_A 10 RVFHKQAFEYISIALRID 27 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 456888888888888643
No 311
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=22.49 E-value=1e+02 Score=23.40 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=14.1
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHH
Q psy12000 105 CLASIHFLRCHYQEAIDIYKRIL 127 (507)
Q Consensus 105 ~la~~~~~~g~~~~A~~~~~~~l 127 (507)
..|.-.-..|+|++|+.+|.+++
T Consensus 23 ~~Ave~D~ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 23 SKAAQEDKAGNYEEALQLYQHAV 45 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHH
Confidence 34444555677777777666655
No 312
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=22.27 E-value=1.3e+02 Score=25.33 Aligned_cols=49 Identities=6% Similarity=0.066 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhcC--CchhhhHHHHHhhccccccchhHHHHHHHHHhcC
Q psy12000 409 YQEAIDIYKRILLDH--KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 457 (507)
Q Consensus 409 ~~~Ai~~~~~~l~~~--p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~ 457 (507)
..++.++|.-+.... -.....+..-|..+...|++++|.++|+..++..
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 456667777666543 3333344445666677777777777777777654
No 313
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.92 E-value=84 Score=26.82 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=26.7
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHH
Q psy12000 107 ASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGA 141 (507)
Q Consensus 107 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 141 (507)
-.+..+.|.|++|.+++++.+..+|++......|.
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~ 155 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLL 155 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 34557899999999999999988777766555444
Done!