RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12000
(507 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.0 bits (134), Expect = 2e-08
Identities = 68/511 (13%), Positives = 134/511 (26%), Gaps = 143/511 (27%)
Query: 78 HLSHKLGDEKSLMEYHQK--LEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH--KDL 133
H H + E +Y K L + A + C + D+ K IL +
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFED-----AFVDNFDCKDVQ--DMPKSILSKEEIDHI 54
Query: 134 LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKP 193
+ + QE++ + + +N YK S Q +P
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVE---EVLRIN------YKFLMSPIKTEQRQP 105
Query: 194 IL-----VSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYIL----- 243
+ + L + Y++ + + L + L P + +L
Sbjct: 106 SMMTRMYIEQRDRLYNDNQV----FAKYNVSRLQPYLK--LRQALLELRPAKNVLIDGVL 159
Query: 244 ---KAV----------VQ---------VTIGQDTGSREMVKAAQALF-QLVGSSQSECDT 280
K VQ + + +++ Q L Q+ + S D
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 281 VPGRQCMASSFFLLRSFKDVILYLSSIKSYYTS----DD--------SFNFNFAQAKC-- 326
++ + S + + L K Y + +FN C
Sbjct: 220 ------SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-----SCKI 268
Query: 327 -----------ALGQYKEAEEMFLLVQNEGLKNDYV------YISHLTKCSPSRAKTRLS 369
L + L + L D V Y+ + P T
Sbjct: 269 LLTTRFKQVTDFLSAATT-THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 370 FHLS---HKLGDEKSLMEYHQKLE-DSLEE--QLCLASIHF--LRCHYQE-AI-----DI 415
LS + D + + + + D L + L + R + ++ I
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 416 YKRIL------------------LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 457
+L L L+ + + E L K
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP----KESTISIPSIYLE-----LKVK 438
Query: 458 PTSRIALNLKACNTYKLFTSRAAENQLKPIL 488
+ AL+ + Y + + +++ + P L
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Score = 55.6 bits (133), Expect = 3e-08
Identities = 58/452 (12%), Positives = 119/452 (26%), Gaps = 135/452 (29%)
Query: 85 DEKSLMEYHQKLEDSLEEQLCLASIHF--LRCHYQEAIDIYKRILLDHKDLLALNVYGAM 142
++++E QKL ++ S H ++ +R+L L V
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---- 249
Query: 143 CYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPL 202
L +V + A NL C L T+R + +
Sbjct: 250 ----LL--NVQNAKAWN----------AFNLS-CKI--LLTTRFKQ-------------V 277
Query: 203 IDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVK 262
D + + H+ + H + +L + QD RE++
Sbjct: 278 TDFLSAAT----TTHISLDHHSMTLTPDEVKS-------LLLKYLDCRP-QDL-PREVLT 324
Query: 263 AAQALFQLVGSSQSEC----DTVPGRQCMASSFFLLRSFKDVILYLSS--IKSYYTSDDS 316
++ S + D C L + + L + +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDK----LTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 317 FNFNF---AQAKCALGQYKEAEEMFLLVQ--------NEGLKNDYVYISHLTKCSPSRAK 365
F + + ++ ++V + K + I
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PS--------- 430
Query: 366 TRLSFHLSHKLGDEKSLMEYHQKLEDS--LEEQLCLASI---------------HFLRCH 408
+ L KL +E +L H+ + D + + + H
Sbjct: 431 --IYLELKVKLENEYAL---HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 409 YQEAIDIYKRILLD--------HKDLLALNVYGAMC-------YYKLDYYDVSQEQVAMY 453
+ E + +++ + LD D A N G++ +YK Y + +
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK-PYICDNDPKYERL 544
Query: 454 LAQKPTSRIALNLKACNTYKLFTSRAAENQLK 485
+ N F + EN +
Sbjct: 545 V---------------NAILDFLPKIEENLIC 561
Score = 44.5 bits (104), Expect = 9e-05
Identities = 40/262 (15%), Positives = 72/262 (27%), Gaps = 75/262 (28%)
Query: 6 SLTDAWLG--YCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQIL 63
+TD H L + L E L YL Q L
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--------------YLDCRPQD---L 318
Query: 64 EKVPPSRAKTRLSFHLS---HKLGDEKSLMEYHQKLE-DSLEE--QLCLASIHF--LRCH 115
P T LS + D + + + + D L + L + R
Sbjct: 319 ----PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 116 YQE-AI-----DIYKRIL------------------LDHKDLLALNVYGAMCYYKLDYYD 151
+ ++ I +L L L+ +
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP----KESTISIPS 430
Query: 152 VSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRL 211
+ E L K + AL+ + Y + + ++ ++PP +D +
Sbjct: 431 IYLE-----LKVKLENEYALHRSIVDHYNI--PKTFDSD------DLIPPYLD---QYFY 474
Query: 212 NLVIYHLKQEEHQEAFDLIKNL 233
+ + +HLK EH E L + +
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMV 496
Score = 41.8 bits (97), Expect = 6e-04
Identities = 25/154 (16%), Positives = 49/154 (31%), Gaps = 28/154 (18%)
Query: 5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILE 64
D + Y + H+G + HL N + ++L + +
Sbjct: 463 DLIPPYLDQYFYSHIG-H-----------HLKNIEHPERMT-----LFRMVFLDFRFLEQ 505
Query: 65 KVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYK 124
K+ S + + L K Y + E + A + FL +E + K
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN-AILDFLP-KIEENLICSK 563
Query: 125 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVA 158
+ DLL + A+ ++ + +QV
Sbjct: 564 -----YTDLLRI----ALMAEDEAIFEEAHKQVQ 588
Score = 32.5 bits (73), Expect = 0.43
Identities = 30/216 (13%), Positives = 61/216 (28%), Gaps = 71/216 (32%)
Query: 21 QYKQALGIYETLRHLP----------NPPEDTEFNIASCYFYLGMYLQANQILEKVPPSR 70
+ L ++ H+P D + + Y ++EK P
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS--------LVEKQPKES 424
Query: 71 AKT--RLSFHLSHKLGDEKSLMEYHQKLEDS--LEEQLCLASI---------------HF 111
+ + L KL +E +L H+ + D + + + H
Sbjct: 425 TISIPSIYLELKVKLENEYAL---HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 112 LRCHYQEAIDIYKRILLD--------HKDLLALNVYGAMC-------YYKLDYYDVSQEQ 156
+ E + +++ + LD D A N G++ +YK Y + +
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK-PYICDNDPK 540
Query: 157 VAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLK 192
+ N F + EN +
Sbjct: 541 YERLV---------------NAILDFLPKIEENLIC 561
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 53.4 bits (128), Expect = 9e-08
Identities = 67/466 (14%), Positives = 136/466 (29%), Gaps = 95/466 (20%)
Query: 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTE---------FNIASCYFYLGMYLQANQI 62
L Y GQ + AL L + N A Y+++G
Sbjct: 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIY 116
Query: 63 LEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDI 122
++KV EK Y + + E+ + + A
Sbjct: 117 VDKVKHV---------------CEKFSSPYRIESPELDCEE-GWTRLKCGGNQNERAKVC 160
Query: 123 YKRIL-LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY---LAQKPTSRIALNLKACNT 178
+++ L K+ + + Y+LD + SQ + + P ++ L A
Sbjct: 161 FEKALEKKPKNPEFTSGLA-IASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219
Query: 179 YKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIK---NLEP 235
+K+ E + + ++ L + + + ++ +++E +A +L+K P
Sbjct: 220 HKMREEGEEEGEGEKLVEEAL-EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278
Query: 236 SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLR 295
+ + R V L + + + LL
Sbjct: 279 NNAYLHCQIGCCY---------RAKVFQVMNLRENGMYGKRK---------------LLE 314
Query: 296 SFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISH 355
+ +L + A QY+EAE F ++ L + H
Sbjct: 315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374
Query: 356 LTKCSPSRAKTRLSFHLSHKLGDEKSLMEY------------HQKLEDSLEEQLC----- 398
L +F L ++K++ + +K++D L++
Sbjct: 375 LRYG---------NFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSK 425
Query: 399 ----------LASIHFLRCHYQEAIDIYKRIL-LDHKDLLALNVYG 433
LA + L Q+A + +R L A + G
Sbjct: 426 NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 51.3 bits (122), Expect = 3e-07
Identities = 36/253 (14%), Positives = 83/253 (32%), Gaps = 25/253 (9%)
Query: 16 HFHLGQYKQALGIYETLRHL-PNPPEDTEFNIASCYFYLGMYLQANQILEK--VPPSRAK 72
F++G Y+Q + + ++ P + + + Y Y ++ P +A
Sbjct: 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAV 68
Query: 73 TRLSFHLSHKLGDEKSLMEYHQKLEDSLEE-----QLCLASIHFLRCHYQEAIDIYKRIL 127
+ +L+ + + E +++ S++ L ASI+F + A+
Sbjct: 69 RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR-----T 123
Query: 128 LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAA 187
L D L KLD D++++++ Q + + A + +
Sbjct: 124 LHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQ 183
Query: 188 ENQLKPILVSILPPLIDVIPES---RLNLVIYHLKQEEHQEA---FDLIKNLEPSVPQEY 241
+ I + D + H+ Q + A + + P+
Sbjct: 184 DA------YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237
Query: 242 ILKAVVQVTIGQD 254
I V+ +G+
Sbjct: 238 INLVVLSQHLGKP 250
Score = 44.0 bits (103), Expect = 7e-05
Identities = 30/196 (15%), Positives = 54/196 (27%), Gaps = 7/196 (3%)
Query: 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNI--ASCYFYLGMYLQANQILEKVPPS 69
+ + + +T F + AS YFY A + L +
Sbjct: 71 FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSL 130
Query: 70 RAKTRLSF-HLSHKLGDE--KSLMEYHQKLEDSLEEQLCLASIHFL--RCHYQEAIDIYK 124
L D K L + + ED+ QL A + Q+A I++
Sbjct: 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQ 190
Query: 125 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTS 184
+ L L A C+ ++ ++ + L + L + L
Sbjct: 191 EMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKP 250
Query: 185 RAAENQLKPILVSILP 200
N+ L
Sbjct: 251 PEVTNRYLSQLKDAHR 266
Score = 35.9 bits (82), Expect = 0.025
Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 2/117 (1%)
Query: 379 EKSLMEYHQKLEDSLEEQLCLASIHFL--RCHYQEAIDIYKRILLDHKDLLALNVYGAMC 436
K L + + ED+ QL A + Q+A I++ + L L A C
Sbjct: 150 RKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAAC 209
Query: 437 YYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGP 493
+ ++ ++ + L + L + L N+ L A
Sbjct: 210 HMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 51.0 bits (122), Expect = 7e-07
Identities = 39/340 (11%), Positives = 93/340 (27%), Gaps = 43/340 (12%)
Query: 11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSR 70
WL + G Y +A + L N + A C L + A +L + P R
Sbjct: 122 WLAQVYCCTGDYARAKCLLTKED-LYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR 180
Query: 71 AKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH 130
+ + L+ ++ ++ ++ A + YK
Sbjct: 181 KDEKNA----------NKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA---- 226
Query: 131 KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQ 190
L ++ + +L + L K A L+ + +
Sbjct: 227 ---LMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTS 283
Query: 191 LKPILVSI--LPPLIDVIPES---RLNLVIYHLKQEEHQEAFDLIK---NLEPSVPQEYI 242
+ L I+ + +S L + + + ++P Y
Sbjct: 284 HEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYP 343
Query: 243 LKAVVQVTIGQDTGSREMVKAAQALFQLV-GSSQSECDTVPGRQCMASSFFLLRSFKDVI 301
L G+ ++ + L + + + + + +
Sbjct: 344 LHLASLHESGEKN---KLYLISNDLVDRHPEKAVTWL-------AVGIYYLCVNKISEAR 393
Query: 302 LYLS---SIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMF 338
Y S ++ + ++ FA + G++ +A +
Sbjct: 394 RYFSKSSTMDPQFG--PAWI-GFAHSFAIEGEHDQAISAY 430
Score = 41.7 bits (98), Expect = 5e-04
Identities = 35/263 (13%), Positives = 85/263 (32%), Gaps = 27/263 (10%)
Query: 207 PESRLNLVIYHLKQEEHQEAFDLIKN--LEPSVPQEYILKAVVQVTIGQDTGSREMVKAA 264
P L + ++ A L+ L L A V + G+ ++
Sbjct: 117 PNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGET 176
Query: 265 QALFQLVGSSQSECDTVPGRQCMASSFFLL-RSFKDVILYLSSIKSYYTS-----DDSFN 318
+ ++ G + AS +L + + ++ + + + Y +
Sbjct: 177 NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236
Query: 319 FNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGD 378
F+ + L +E + + L + K D ++ L L + + +
Sbjct: 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM---------LKLNKTSHEDE 287
Query: 379 EKSLMEYHQKLE---DSLEEQLCLASIHFLRCHYQEAIDIYKRIL-LDHKDLLALNVYGA 434
+ +Y + S + LC A F+R + + + I +IL +D +L ++ A
Sbjct: 288 LRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLA 347
Query: 435 MCYYKLDYYDVSQEQVAMYLAQK 457
++ + ++
Sbjct: 348 -SLHESGEKN-----KLYLISND 364
Score = 41.0 bits (96), Expect = 9e-04
Identities = 36/358 (10%), Positives = 84/358 (23%), Gaps = 55/358 (15%)
Query: 96 LEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQE 155
+ + + LA ++ Y A + + L ++ + A C KL + +
Sbjct: 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLA-AFCLVKLYDWQGALN 171
Query: 156 QVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVI 215
+ + + A L + I +
Sbjct: 172 LLGETNPFRKDEKNANKLLMQD-----------------------GGIKLEASMCYLRGQ 208
Query: 216 YHLKQEEHQEAFDLIK---NLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVG 272
+ A + K ++ +A Q+ + E L
Sbjct: 209 VYTNLSNFDRAKECYKEALMVDA-----KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTY 263
Query: 273 SSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYK 332
S + + + YLSSI S D A ++
Sbjct: 264 SKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLL-CKADTLFVRSRFI 322
Query: 333 EAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKT--RLSFHLSHKLGDEKSLMEYHQKLE 390
+ + + + + P L K + + ++
Sbjct: 323 DVLAIT---------------TKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367
Query: 391 ---DSLEEQLCLASIHFLRCHYQEAIDIYKR-ILLDHKDLLALNVYGAMCYYKLDYYD 444
+ L + + EA + + +D + A + + +D
Sbjct: 368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAH-SFAIEGEHD 424
Score = 35.6 bits (82), Expect = 0.040
Identities = 64/459 (13%), Positives = 124/459 (27%), Gaps = 66/459 (14%)
Query: 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTE----------------FNIASCYFYLGM 55
+C L ++ AL + ++ + Y L
Sbjct: 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215
Query: 56 YLQA----NQILEKVPP-SRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIH 110
+ +A + L A +L + +E L+ S E+ L S++
Sbjct: 216 FDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLY 275
Query: 111 FLRCH-------YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY--- 160
L+ + + A D I K L + + + + +A+
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRF----IDVLAITTKI 331
Query: 161 LAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQ 220
L P + L + ++ LV P + L + IY+L
Sbjct: 332 LEIDPYNLDVYPLHLASLHESGEKNKLYLISN-DLVDRHPEK----AVTWLAVGIYYLCV 386
Query: 221 EEHQEAFDLIKN---LEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSE 277
+ EA ++P +I A G+ + A LFQ
Sbjct: 387 NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-------- 438
Query: 278 CDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEM 337
T + L + YL S + + D + A
Sbjct: 439 -GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINH 497
Query: 338 FLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSF-HLSHKLGD-EKSLMEYHQKLE---DS 392
F L + A T + H KL + ++ +Q L +
Sbjct: 498 F----QNALL----LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549
Query: 393 LEEQLCLASIHFLRCHYQEAIDIYKRIL-LDHKDLLALN 430
+A ++ + AI L + +++A +
Sbjct: 550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASD 588
Score = 31.3 bits (71), Expect = 0.82
Identities = 23/183 (12%), Positives = 48/183 (26%), Gaps = 18/183 (9%)
Query: 311 YTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAK----- 365
T + + F AQ C G Y A+ L+ E L N +L +
Sbjct: 113 ITGNPNDAFWLAQVYCCTGDYARAKC---LLTKEDLYNRSSACRYLAAFCLVKLYDWQGA 169
Query: 366 ---TRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD 422
+ + L+ ++ ++ ++ A + YK
Sbjct: 170 LNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA--- 226
Query: 423 HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAEN 482
L ++ + +L + L K A L+ + +
Sbjct: 227 ----LMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKT 282
Query: 483 QLK 485
+
Sbjct: 283 SHE 285
Score = 27.9 bits (62), Expect = 9.0
Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 30/142 (21%)
Query: 9 DAW--LGYCHFHLGQYKQALGIYET-LRHLPNPPEDTEFNIASCYFYLGMYLQANQILEK 65
AW + G++ QA+ Y T R + + LG L AN+
Sbjct: 408 PAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL-PYLFLGMQHMQLGNILLANE---- 462
Query: 66 VPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKR 125
S+ L L+ + L + F + Q AI+ ++
Sbjct: 463 ----------YLQSSYALFQYDPLL-LN-----------ELGVVAFNKSDMQTAINHFQN 500
Query: 126 ILLDHKDLLALNVYGAMCYYKL 147
LL K + A + L
Sbjct: 501 ALLLVKKTQSNEKPWAATWANL 522
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 45.4 bits (108), Expect = 2e-05
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL-LDHKDLLALNVYGAMCY 144
E + E L+++L+ + LA H+ C ++ + ++ D L V+
Sbjct: 8 ETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG-TL 66
Query: 145 YKLDYYDVSQEQVAMYLAQK 164
+L+ + YL+ K
Sbjct: 67 VELNKAN-----ELFYLSHK 81
Score = 45.4 bits (108), Expect = 2e-05
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 379 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL-LDHKDLLALNVYGAMCY 437
E + E L+++L+ + LA H+ C ++ + ++ D L V+
Sbjct: 8 ETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG-TL 66
Query: 438 YKLDYYDVSQEQVAMYLAQK 457
+L+ + YL+ K
Sbjct: 67 VELNKAN-----ELFYLSHK 81
Score = 31.5 bits (72), Expect = 0.63
Identities = 36/271 (13%), Positives = 69/271 (25%), Gaps = 54/271 (19%)
Query: 12 LGYCHFHLGQYKQALGIYETLRHL-PNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSR 70
L H++ +K + + P L +
Sbjct: 28 LAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP-VHIGTLVELNKANEL----------- 75
Query: 71 AKTRLSFHLSHKLGDEK---------------SLMEYHQKLEDSLEEQLCL----ASIHF 111
F+LSHKL D + ++ L + L
Sbjct: 76 ------FYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWI 129
Query: 112 LRCH-------YQEAIDIYKR-ILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ 163
H + +A+ Y L L + G + Y + +++ + L+
Sbjct: 130 AYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIG-LEYGLTNNSKLAERFFSQALSI 188
Query: 164 KPTSRIALNLKACNTYKLFTSRAAENQ----LKPILVSILPPLIDVIPESRLNLVIYHLK 219
P ++ ++ + AE L+ I +D NL K
Sbjct: 189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248
Query: 220 QEEHQEA---FDLIKNLEPSVPQEYILKAVV 247
+++ EA L P Y +
Sbjct: 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYI 279
Score = 31.5 bits (72), Expect = 0.69
Identities = 16/147 (10%), Positives = 43/147 (29%), Gaps = 23/147 (15%)
Query: 9 DAW--LGYCHFHLGQYKQALGIYETLRHL-PNPPEDTEFNIASCYFYLGMYLQANQILEK 65
+G + K A + + P P + F G + A +
Sbjct: 160 LPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF-VMHEVGVVAFQNGEWKTAEKWFLD 218
Query: 66 VPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKR 125
+ +++ +K + L + Y EA+D +++
Sbjct: 219 A------LEKIKAIGNEVTVDKWEPLLNN-----------LGHVCRKLKKYAEALDYHRQ 261
Query: 126 -ILLDHKDLLALNVYGAMCYYKLDYYD 151
++L ++ + G + + ++
Sbjct: 262 ALVLIPQNASTYSAIG-YIHSLMGNFE 287
Score = 30.7 bits (70), Expect = 1.1
Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 31/147 (21%)
Query: 12 LGYCHFHLGQYKQALGIYE-TLRHLPN-PPEDTEFNIASCYFYLGMYLQANQILEKVPPS 69
+G F G++K A + L + E T LG
Sbjct: 199 VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG--------------- 243
Query: 70 RAKTRLSFHLSHKLGD-EKSLMEYHQKLE---DSLEEQLCLASIHFLRCHYQEAIDIYKR 125
H+ KL ++L + Q L + + IH L +++ A+D +
Sbjct: 244 --------HVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295
Query: 126 -ILLDHKDLLALNVYGAMCYYKLDYYD 151
+ L D ++ + G C
Sbjct: 296 ALGLRRDDTFSVTMLG-HCIEMYIGDS 321
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 43.3 bits (102), Expect = 1e-04
Identities = 29/251 (11%), Positives = 73/251 (29%), Gaps = 38/251 (15%)
Query: 12 LGYCHFHLGQYKQALGIYET----LRHLPNPPEDTEF--NIASCYFYLG-------MYLQ 58
G F +Y +A+G Y L + + E EF +A Y+++ LQ
Sbjct: 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166
Query: 59 ANQILEKVPPSRAKTRLSFHL----SHKLGDEKSLMEYHQKLEDSLEEQLC--------- 105
A I + P +T S + + + + + +
Sbjct: 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLL 226
Query: 106 -LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAM-----CYYKLDYYDVSQE--QV 157
+A+ + Q A++ +++ ++ + + + K + + +
Sbjct: 227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEE 286
Query: 158 AMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSIL--PPLIDVIPESRLNLVI 215
+ + + ++ E ++ +L S L I +
Sbjct: 287 GLDHITARSHKF-YKELFLFLQAVYKETVDERKIHDLL-SYFEKKNLHAYIEACARSAAA 344
Query: 216 YHLKQEEHQEA 226
++A
Sbjct: 345 VFESSCHFEQA 355
Score = 33.6 bits (77), Expect = 0.13
Identities = 17/143 (11%), Positives = 43/143 (30%), Gaps = 27/143 (18%)
Query: 12 LGYCHFHLGQYKQALGIYE-----TLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV 66
+ + G + A+ ++ + +P+ F ++ G +A Q +E+
Sbjct: 228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEG 287
Query: 67 ---------PPSRAKTRLSFHLSHKLGDEKSLMEYHQKLE-----DSLEEQLCLASIHFL 112
+ + + DE+ + + E +E A+ F
Sbjct: 288 LDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347
Query: 113 RC--------HYQEAIDIYKRIL 127
Y++ + + IL
Sbjct: 348 SSCHFEQAAAFYRKVLKAQEDIL 370
Score = 30.6 bits (69), Expect = 1.3
Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 35/166 (21%)
Query: 21 QYKQALGIYETLRHLPNPPEDTE--------FNIASCYFYLG-------MYLQANQILEK 65
Y + E L + P + F F Y +A + L
Sbjct: 74 TYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPF 133
Query: 66 VPPSRAKTRLSFHLS---HKLGDEKSLMEYHQKLEDSLEEQLC-----------LASIHF 111
V K F ++ + + M + + D + +A +
Sbjct: 134 VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193
Query: 112 LRCHYQEAIDIYKRIL-----LDHKDLLALNVYG-AMCYYKLDYYD 151
HY +A+ + L + + +A+++ A Y +
Sbjct: 194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ 239
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 43.3 bits (102), Expect = 1e-04
Identities = 39/251 (15%), Positives = 84/251 (33%), Gaps = 37/251 (14%)
Query: 12 LGYCHFHLGQYKQALGIYE----TLRHLPNPPEDTEF--NIASCYFYLG-------MYLQ 58
G +Y A+ ++ L + + E EF ++ Y+Y+ Q
Sbjct: 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168
Query: 59 ANQILEKVPPSRAKTRLSFHL----SHKLGDEKSLMEYHQK-------LEDSLEEQLC-- 105
A +I ++ + L L + + + QK +
Sbjct: 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY 228
Query: 106 -LASIHFLRCHYQEAIDIYKRIL-----LDHKDLLALNVYG-AMCYYKLDYYDVSQE--Q 156
+ + Y++AI +KR + + L + +YKL D + E
Sbjct: 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHS 288
Query: 157 VAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSI-LPPLIDVIPESRLNLVI 215
M +QK I L+ + L+ S E ++ + L + + +++
Sbjct: 289 KGMAYSQKAGDVIYLS-EFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAK 347
Query: 216 YHLKQEEHQEA 226
Y+ +++ Q+A
Sbjct: 348 YYHERKNFQKA 358
Score = 39.0 bits (91), Expect = 0.003
Identities = 25/136 (18%), Positives = 50/136 (36%), Gaps = 23/136 (16%)
Query: 12 LGYCHFHLGQY-------KQALGIYETLRHLPNPPEDTEFNIASCYFYLG-------MYL 57
+G C QY K+A+ ++E LP+ P F I ++ LG +
Sbjct: 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP-QAYFLITQIHYKLGKIDKAHEYHS 288
Query: 58 QANQILEKVPPSRAKTRLSF--HLSHKLGDEKSLMEYHQKLEDSLEEQ------LCLASI 109
+ +K + F L DE+++ + LE + + +A
Sbjct: 289 KGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348
Query: 110 HFLRCHYQEAIDIYKR 125
+ R ++Q+A + +
Sbjct: 349 YHERKNFQKASAYFLK 364
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 41.1 bits (97), Expect = 5e-04
Identities = 25/173 (14%), Positives = 60/173 (34%), Gaps = 38/173 (21%)
Query: 4 ADSLTDAWLGYCHFHLGQYKQALGIYE----TLRHLPNPPE--DTEFNIASCYFYLGMYL 57
+ + LG +F+LG Y +A+ ++ + + + + N+ + +G +
Sbjct: 86 SAIYSQ--LGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFD 143
Query: 58 QANQILEKVPPSRAKTRLSFHLSHKLGDEKS-------LMEYHQKLEDSLEEQLCLASIH 110
+A E+ L+ +LGD S L + L ++
Sbjct: 144 EAAICCER----------HLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD 193
Query: 111 FLRCHYQEAIDIYK------RILLDHKDL-LALN----VYGAMCYYK--LDYY 150
++ A++ Y+ R L D A Y + ++ ++++
Sbjct: 194 DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246
Score = 41.1 bits (97), Expect = 6e-04
Identities = 29/204 (14%), Positives = 54/204 (26%), Gaps = 32/204 (15%)
Query: 1 MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTE------FNIASCYFYLG 54
+G+ SL+ + LG ++ + + G
Sbjct: 3 LGSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAG 62
Query: 55 -------MYLQANQILEKVPPSRAKTRLSFHLSH-KLGDEKSLMEYHQK-------LEDS 99
+ A Q + + + ++ LGD M+YH+ + D
Sbjct: 63 DCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR 122
Query: 100 LEEQLC---LASIHFLRCHYQEAIDIYK------RILLDHKDL-LALNVYGAMCYYKLDY 149
L E L + + + EA + R L D AL G Y+
Sbjct: 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLG-NVYHAKGK 181
Query: 150 YDVSQEQVAMYLAQKPTSRIALNL 173
+ + K A+
Sbjct: 182 HLGQRNPGKFGDDVKEALTRAVEF 205
Score = 40.4 bits (95), Expect = 0.001
Identities = 20/130 (15%), Positives = 43/130 (33%), Gaps = 32/130 (24%)
Query: 4 ADSLTDAWLGYCHFHLGQ-------YKQALGIYETLRHLPNPPE-DTEFNIASCYFYLGM 55
+ ++ LG H LGQ YK+ L + L E + +++ + Y L
Sbjct: 263 RRANSN--LGNSHIFLGQFEDAAEHYKRTLALAVELGE--REVEAQSCYSLGNTYTLLHE 318
Query: 56 YLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCH 115
+ A + + ++ +LGD + L + H
Sbjct: 319 FNTAIEYHNR----------HLAIAQELGD-------RIGEARACW---SLGNAHSAIGG 358
Query: 116 YQEAIDIYKR 125
++ A+ ++
Sbjct: 359 HERALKYAEQ 368
Score = 36.9 bits (86), Expect = 0.013
Identities = 23/156 (14%), Positives = 54/156 (34%), Gaps = 40/156 (25%)
Query: 12 LGYCHFHLGQYKQALGIYETLRHLP-------NPPE-DTEFNIASCYFYLGMYLQANQIL 63
LG ++ LG ++ A+ ++ L E N+ + + +LG + A +
Sbjct: 229 LGNTYYLLGDFQAAIEHHQ--ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286
Query: 64 EKVPPSRAKTRLSFHLSHKLGDEKSLME-YHQKLEDSLEEQLCLASIHFLRCHYQEAIDI 122
++ + L+ +LG+ + + + L + + L + AI+
Sbjct: 287 KR----------TLALAVELGEREVEAQSCYS-----------LGNTYTLLHEFNTAIEY 325
Query: 123 YKRILL------DHKDL-LALNVYGAMCYYKLDYYD 151
+ R L D A G + + ++
Sbjct: 326 HNRHLAIAQELGDRIGEARACWSLGN-AHSAIGGHE 360
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 40.8 bits (96), Expect = 8e-04
Identities = 26/187 (13%), Positives = 50/187 (26%), Gaps = 27/187 (14%)
Query: 12 LGYCHFHLGQYKQALGIYET-LRHLPNPPEDTEFNIASCYFYLGMYLQA----NQILEKV 66
+G+ K AL ++ + G +A ++L+
Sbjct: 66 RATVFLAMGKSKAALPDLTKVIQLKMDFTA-ARLQRGHLLLKQGKLDEAEDDFKKVLKSN 124
Query: 67 PPSRAKTRLSFHLS---------------HKLGD-EKSLMEYHQKLE---DSLEEQLCLA 107
P + L GD ++ + LE E + A
Sbjct: 125 PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 184
Query: 108 SIHFLRCHYQEAIDIYKRIL-LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 166
++AI K L + + A YY+L +++S +V L
Sbjct: 185 ECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIS-TLYYQLGDHELSLSEVRECLKLDQD 243
Query: 167 SRIALNL 173
+
Sbjct: 244 HKRCFAH 250
Score = 40.4 bits (95), Expect = 0.001
Identities = 27/155 (17%), Positives = 47/155 (30%), Gaps = 9/155 (5%)
Query: 319 FNFAQAKCALGQYKEAEEMFLLVQ--NEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL 376
G+ EAE+ F V N + S L K + + +
Sbjct: 98 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNA-FGS 156
Query: 377 GD-EKSLMEYHQKLE---DSLEEQLCLASIHFLRCHYQEAIDIYKRIL-LDHKDLLALNV 431
GD ++ + LE E + A ++AI K L + + A
Sbjct: 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYK 216
Query: 432 YGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNL 466
YY+L +++S +V L +
Sbjct: 217 IS-TLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 250
Score = 38.5 bits (90), Expect = 0.004
Identities = 26/168 (15%), Positives = 53/168 (31%), Gaps = 30/168 (17%)
Query: 11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTE--FNIASCYFYLGMYLQA----NQILE 64
C G+ ++A+ + L ++TE + I++ Y+ LG + + + L+
Sbjct: 182 LRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239
Query: 65 ------------KVPPSRAKTRLSFHLSHKLGD-EKSLMEYHQKLEDSLEEQLCLASIHF 111
K K S + G + +Y ++
Sbjct: 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKE 299
Query: 112 LRCH-------YQEAIDIYKR-ILLDHKDLLALNVYGAMCYYKLDYYD 151
CH EAI + + ++ ++ AL Y + YD
Sbjct: 300 RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA-EAYLIEEMYD 346
Score = 32.3 bits (74), Expect = 0.41
Identities = 34/194 (17%), Positives = 57/194 (29%), Gaps = 25/194 (12%)
Query: 12 LGYCHFHLGQYKQALGIY-ETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV---P 67
LG GQ AL + + P+ + A+ + +G A L KV
Sbjct: 32 LGKKLLAAGQLADALSQFHAAVDGDPDNYI-AYYRRATVFLAMGKSKAALPDLTKVIQLK 90
Query: 68 PSRAKTRLSFHLSH-KLGD-EKSLMEYHQKLE------------------DSLEEQLCLA 107
RL K G +++ ++ + L+ D ++ A
Sbjct: 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQA 150
Query: 108 SIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 167
F Y AI +IL L A C+ K + + K +
Sbjct: 151 LNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210
Query: 168 RIALNLKACNTYKL 181
A + Y+L
Sbjct: 211 TEAFYKISTLYYQL 224
Score = 30.8 bits (70), Expect = 1.1
Identities = 53/385 (13%), Positives = 100/385 (25%), Gaps = 66/385 (17%)
Query: 81 HKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKR-ILLDHKDLLALNVY 139
H G + + + +E+ L L +A+ + + D + +A
Sbjct: 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR 66
Query: 140 GAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSIL 199
+ + A L + + LK
Sbjct: 67 AT-VFLAMGKSK---------AA----------LPDLT-------KVIQ--LKMDF---- 93
Query: 200 PPLIDVIPESRLNLVIYHLKQEEHQEA---FDLIKNLEPSVPQEYILKAV------VQVT 250
+RL LKQ + EA F + PS +E ++ +Q
Sbjct: 94 -------TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL 146
Query: 251 IGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSY 310
Q + A+ L + R+ A F + I L +
Sbjct: 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 206
Query: 311 YTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLK--NDYVYISHLTKCSPSRAKTRL 368
+ + + LG ++ + E LK D+ K K
Sbjct: 207 KNDNTEAFYKISTLYYQLGDHELSLSEV----RECLKLDQDHKRCFAHYKQVKKLNKLIE 262
Query: 369 SFHLSHKLGD-EKSLMEYHQKLEDSLEEQLCLASIHFLRCH-------YQEAIDIYKR-I 419
S + G + +Y ++ CH EAI + +
Sbjct: 263 SAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322
Query: 420 LLDHKDLLALNVYGAMCYYKLDYYD 444
++ ++ AL Y + YD
Sbjct: 323 QMEPDNVNALKDRA-EAYLIEEMYD 346
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 39.7 bits (93), Expect = 8e-04
Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 7/163 (4%)
Query: 319 FNFAQAKCALGQYKEAEEMF--LLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL 376
A GQ +A F + N Y + + S K
Sbjct: 8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN 67
Query: 377 GD-EKSLMEYHQKLE---DSLEEQLCLASIHFLRCHYQEAIDIYKRIL-LDHKDLLALNV 431
+ +K+ + Y + L+ ++++ A + R ++A+ +Y++IL L+ +L A
Sbjct: 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIF 127
Query: 432 YGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL 474
G Y + E L+ + A +
Sbjct: 128 LGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFT 170
Score = 37.0 bits (86), Expect = 0.006
Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 11/141 (7%)
Query: 12 LGYCHFHLGQYKQALGIYE-TLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV---- 66
L + Y +A Y+ L+ PN D A G A ++ EK+
Sbjct: 60 LALAYKKNRNYDKAYLFYKELLQKAPNNV-DCLEACAEMQVCRGQEKDALRMYEKILQLE 118
Query: 67 PP-SRAKTRLSFHLSHKLGDEKSLMEYHQK-LE---DSLEEQLCLASIHFLRCHYQEAID 121
A L + EK +E K L + Y++A +
Sbjct: 119 ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARN 178
Query: 122 IYKRILLDHKDLLALNVYGAM 142
++++L A +
Sbjct: 179 SLQKVILRFPSTEAQKTLDKI 199
Score = 34.3 bits (79), Expect = 0.055
Identities = 26/195 (13%), Positives = 52/195 (26%), Gaps = 51/195 (26%)
Query: 9 DAWL--GYCHFHLGQYKQALGIYE----------------TLRHLPNPPEDTEFNIASCY 50
D L GQ QA+ + + +A Y
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAY 64
Query: 51 FYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLE---DSLEEQLCLA 107
Y +K+ + Y + L+ ++++ A
Sbjct: 65 KKNRNY-----------------------------DKAYLFYKELLQKAPNNVDCLEACA 95
Query: 108 SIHFLRCHYQEAIDIYKRIL-LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 166
+ R ++A+ +Y++IL L+ +L A G Y + E L+
Sbjct: 96 EMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK 155
Query: 167 SRIALNLKACNTYKL 181
+ A +
Sbjct: 156 MQYARYRDGLSKLFT 170
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 39.6 bits (93), Expect = 0.001
Identities = 22/183 (12%), Positives = 56/183 (30%), Gaps = 38/183 (20%)
Query: 2 GNADSLTDAWLGYCHFHLGQYKQALGIYET----LRHLPNPPE--DTEFNIASCYFYLG- 54
+ + LGY + + ++ +A ++ + + + G
Sbjct: 24 TASGARFM--LGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81
Query: 55 ------MYLQANQILEKVPPSRAKTRLSFH----LSHKLGD--------EKSLMEYHQKL 96
+L+ ++L +P + + ++ GD EKSL Y Q+
Sbjct: 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL-VYAQQA 140
Query: 97 EDSLEEQLC---LASIHFL-------RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK 146
+D + L + + H+ A DI+ + + + ++
Sbjct: 141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHH 200
Query: 147 LDY 149
+
Sbjct: 201 HHH 203
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 40.3 bits (95), Expect = 0.001
Identities = 24/175 (13%), Positives = 50/175 (28%), Gaps = 23/175 (13%)
Query: 6 SLTDAW--LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQIL 63
T A G+ G+ +A ++ + NP + ++A+++
Sbjct: 69 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-NP------SEQEEKEAESQLVKADEMQ 121
Query: 64 EKVPPSRAKTRLSFHLSHKLGD-EKSLMEYHQKLE---DSLEEQLCLASIHFLRCHYQEA 119
+ D ++ + LE E + A ++A
Sbjct: 122 RLRSQALDA--------FDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKA 173
Query: 120 IDIYKRIL-LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNL 173
I K L + A YY+L +++S +V L +
Sbjct: 174 ISDLKAASKLKSDNTEAFYKIS-TLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227
Score = 38.8 bits (91), Expect = 0.004
Identities = 21/147 (14%), Positives = 47/147 (31%), Gaps = 22/147 (14%)
Query: 11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTE--FNIASCYFYLGMYLQANQILEKVPP 68
C G+ ++A+ + L ++TE + I++ Y+ LG + + + +
Sbjct: 159 LRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVREC-- 214
Query: 69 SRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILL 128
L ++ Y K L + + A Y +A Y+ ++
Sbjct: 215 ----------LKLDQDHKRCFAHY--KQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262
Query: 129 DHKDLLALNVYG----AMCYYKLDYYD 151
+ V C+ K +
Sbjct: 263 TEPSVAEYTVRSKERICHCFSKDEKPV 289
Score = 37.6 bits (88), Expect = 0.007
Identities = 26/155 (16%), Positives = 46/155 (29%), Gaps = 9/155 (5%)
Query: 319 FNFAQAKCALGQYKEAEEMF--LLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL 376
G+ EAE+ F +L N + + S L K + +
Sbjct: 75 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDA-FDG 133
Query: 377 GD-EKSLMEYHQKLE---DSLEEQLCLASIHFLRCHYQEAIDIYKRIL-LDHKDLLALNV 431
D ++ + LE E + A ++AI K L + A
Sbjct: 134 ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYK 193
Query: 432 YGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNL 466
YY+L +++S +V L +
Sbjct: 194 IS-TLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227
Score = 27.6 bits (62), Expect = 9.5
Identities = 22/147 (14%), Positives = 47/147 (31%), Gaps = 28/147 (19%)
Query: 8 TDAW--LGYCHFHLGQYKQALGIYETLRHL-PNPPE-----------DTEFNIASCYFYL 53
T+A+ + ++ LG ++ +L L + + A
Sbjct: 188 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 247
Query: 54 GMYLQA----NQILEKVPPSRAKTRLSFHLS-----HKLGD-EKSLMEYHQKLE---DSL 100
G Y A +++ PS A+ + K +++ + L+ D++
Sbjct: 248 GRYTDATSKYESVMK-TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNV 306
Query: 101 EEQLCLASIHFLRCHYQEAIDIYKRIL 127
A + + Y EAI Y+
Sbjct: 307 NALKDRAEAYLIEEMYDEAIQDYEAAQ 333
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein
complex I, protein TRAN; 2.90A {Saccharomyces
cerevisiae} PDB: 3mv3_B
Length = 310
Score = 39.4 bits (91), Expect = 0.002
Identities = 18/157 (11%), Positives = 44/157 (28%), Gaps = 15/157 (9%)
Query: 16 HFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRL 75
+++ G + Q + E + F A LG Y + + K
Sbjct: 23 NYYTGNFVQC--LQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLG-----KVLD 75
Query: 76 SFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL-----LDH 130
+ + + L + ++S E LA+ + ++++ +
Sbjct: 76 LYVQFLDTKNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGT 135
Query: 131 KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 167
+LL L + + + Y +
Sbjct: 136 TELLLLAIE---VALLNNNVSTASTIFDNYTNAIEDT 169
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 38.8 bits (91), Expect = 0.003
Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 30/132 (22%)
Query: 2 GNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTE------FNIASCYFYLGM 55
+ L G G + + +E + ED + + + YFYL
Sbjct: 7 ASCLELAL--EGERLCKSGDCRAGVSFFE--AAVQVGTEDLKTLSAIYSQLGNAYFYLHD 62
Query: 56 YLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCH 115
Y +A + L+ +GD+ + L + + +
Sbjct: 63 YAKALEYHHH----------DLTLARTIGDQLGEA-------KAS---GNLGNTLKVLGN 102
Query: 116 YQEAIDIYKRIL 127
+ EAI +R L
Sbjct: 103 FDEAIVCCQRHL 114
Score = 37.3 bits (87), Expect = 0.009
Identities = 30/163 (18%), Positives = 50/163 (30%), Gaps = 34/163 (20%)
Query: 12 LGYCHFHLGQYKQALGIYE----TLRHLPNPPE--DTEFNIASCYFYLGMYLQANQILEK 65
LG +F+L Y +AL + R + + N+ + LG + +A ++
Sbjct: 53 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112
Query: 66 VPPSRAKTRLSFHLSHKLGDEKSLME--------YHQ--KLEDSLEEQLCLASIHFLRCH 115
+S +L D+ YH K Q +R
Sbjct: 113 ----------HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162
Query: 116 YQEAIDIYK------RILLDHKDL-LALNVYGAMCYYKLDYYD 151
Q A+D Y+ L D A G +Y L +
Sbjct: 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLG-NTHYLLGNFR 204
Score = 36.9 bits (86), Expect = 0.013
Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 27/149 (18%)
Query: 12 LGYCHFHLGQYKQALGIYET----LRHLPNPPE--DTEFNIASCYFYLG-------MYLQ 58
LG + LG+++ A Y+ R L + + +++ + Y L +L+
Sbjct: 233 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292
Query: 59 ANQILEKV--PPSRAKTRLSF-HLSHKLGDEKSLMEYHQK-------LEDSLEEQLCLAS 108
I +++ + S + LG+ M + +K + D E +
Sbjct: 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLN 352
Query: 109 I----HFLRCHYQEAIDIYKRILLDHKDL 133
+ L Y I L
Sbjct: 353 LSDLQMVLGLSYSTNNSIMSENTEIDSSL 381
Score = 35.7 bits (83), Expect = 0.030
Identities = 26/150 (17%), Positives = 56/150 (37%), Gaps = 32/150 (21%)
Query: 4 ADSLTDAWLGYCHFHLGQYKQALGIYETLRHLP-------NPPE-DTEFNIASCYFYLG- 54
+ + LG H+ LG ++ A+ +E + L E N+ + Y +LG
Sbjct: 187 GRAFGN--LGNTHYLLGNFRDAVIAHE--QRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242
Query: 55 ------MYLQANQILEKVP--PSRAKTRLSF-HLSHKLGDEKSLMEYHQK-------LED 98
Y + + ++ A++ S + L D + ++YH K L D
Sbjct: 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND 302
Query: 99 SLEEQLC---LASIHFLRCHYQEAIDIYKR 125
+ E L + + ++ +A+ ++
Sbjct: 303 RIGEGRACWSLGNAYTALGNHDQAMHFAEK 332
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 36.7 bits (85), Expect = 0.006
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTE--FNIASCYFYLGMYLQANQILEKV 66
L + Q++QA +Y L D F+ C L L+A + E V
Sbjct: 76 LAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQCQLRLKAPLKAKECFELV 130
Score = 35.2 bits (81), Expect = 0.020
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQA 59
Y ++ G+ ++A + L D +A+ Y + QA
Sbjct: 42 YAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQA 89
Score = 32.5 bits (74), Expect = 0.15
Identities = 22/162 (13%), Positives = 53/162 (32%), Gaps = 31/162 (19%)
Query: 19 LGQYKQALGIYETLRHLPN-PPEDTE--FNIASCYFYLGMYLQANQILEKVPPSRAKTRL 75
A+ TL+ + P + + ++ A ++ G +A
Sbjct: 12 STAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRF---------- 61
Query: 76 SFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKR-ILLDHKDLL 134
L Y D + + LA+I+ ++ +Q+A D+Y L D
Sbjct: 62 -------------LCIYDFYNVDYI---MGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105
Query: 135 ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC 176
+ + C +L ++E + + ++ + ++
Sbjct: 106 PVF-HTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSY 146
Score = 32.1 bits (73), Expect = 0.21
Identities = 12/74 (16%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 397 LCLASIHFLRCHYQEAIDIYKR-ILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA 455
+ LA+I+ ++ +Q+A D+Y L D + + C +L ++E + +
Sbjct: 74 MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF-HTGQCQLRLKAPLKAKECFELVIQ 132
Query: 456 QKPTSRIALNLKAC 469
++ + ++
Sbjct: 133 HSNDEKLKIKAQSY 146
Score = 31.3 bits (71), Expect = 0.32
Identities = 8/74 (10%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 372 LSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKR-ILLDHKDLLALN 430
+ + +L + + +D +++ A + + +EA ++ + D ++ +
Sbjct: 15 VIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIM 74
Query: 431 VYGAMCYYKLDYYD 444
A Y + +
Sbjct: 75 GLAA-IYQIKEQFQ 87
Score = 27.1 bits (60), Expect = 10.0
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 12 LGYCHFHLGQYKQALGIYETLRHLPNPPE 40
G C L +A +E + N +
Sbjct: 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 37.2 bits (87), Expect = 0.009
Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 28/132 (21%)
Query: 2 GNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTE------FNIASCYFYLGM 55
G+A L A G G + + +E + ED + + + YFYL
Sbjct: 1 GSASCLELALEGERLCKSGDCRAGVSFFE--AAVQVGTEDLKTLSAIYSQLGNAYFYLHD 58
Query: 56 YLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCH 115
Y +A + L+ +GD + L + + +
Sbjct: 59 YAKALEYHHH----------DLTLARTIGD-------QLGEAKASG---NLGNTLKVLGN 98
Query: 116 YQEAIDIYKRIL 127
+ EAI +R L
Sbjct: 99 FDEAIVCCQRHL 110
Score = 36.8 bits (86), Expect = 0.012
Identities = 22/163 (13%), Positives = 51/163 (31%), Gaps = 29/163 (17%)
Query: 12 LGYCHFHLGQYKQALGIYET----LRHLPNPPE--DTEFNIASCYFYLG-------MYLQ 58
LG +F+L Y +AL + R + + N+ + LG +
Sbjct: 49 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 108
Query: 59 ANQILEKVP--PSRAKTRLSF-HLSHKLGDEKSLMEYHQKLEDSLEEQLCL-ASIHFLRC 114
I ++ A+ + ++ H G E + + L A++
Sbjct: 109 HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL--- 165
Query: 115 HYQEAIDIYKRILLDHKDL-LALN----VYGAMCYYK--LDYY 150
Y+E + + + D A + + ++ + +
Sbjct: 166 -YEENLSLVTAL-GDRAAQGRAFGNLGNTHYLLGNFRDAVIAH 206
Score = 35.7 bits (83), Expect = 0.030
Identities = 17/120 (14%), Positives = 41/120 (34%), Gaps = 26/120 (21%)
Query: 12 LGYCHFHLGQYKQALGIYET----LRHLPNPPE--DTEFNIASCYFYLGMYLQANQILEK 65
LG + LG+++ A Y+ R L + + +++ + Y L Y +A K
Sbjct: 229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288
Query: 66 VPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKR 125
++ +L D + L + + ++ +A+ ++
Sbjct: 289 ----------HLAIAQELKD-------RIGEGRACW---SLGNAYTALGNHDQAMHFAEK 328
Score = 32.6 bits (75), Expect = 0.28
Identities = 32/163 (19%), Positives = 57/163 (34%), Gaps = 40/163 (24%)
Query: 4 ADSLTDAWLGYCHFHLGQYKQALGIYETLRHLP-------NPPE-DTEFNIASCYFYLGM 55
+ + LG H+ LG ++ A+ +E + L E N+ + Y +LG
Sbjct: 183 GRAFGN--LGNTHYLLGNFRDAVIAHE--QRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238
Query: 56 YLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCH 115
+ A++ +K + L+ +L D S L + + L
Sbjct: 239 FETASEYYKK----------TLLLARQLKD-------RAVEAQSC---YSLGNTYTLLQD 278
Query: 116 YQEAIDIYK------RILLDHKDL-LALNVYGAMCYYKLDYYD 151
Y++AID + + L D A G Y L +D
Sbjct: 279 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGN-AYTALGNHD 320
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 35.5 bits (82), Expect = 0.009
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 3 NADSLTDAW--LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEF--NIASCYFYLGMYLQ 58
L + + LG LG+Y++A + + P A + LG Y Q
Sbjct: 22 QGKDLAECYLGLGSTFRTLGEYRKAEAVLA--NGVKQFPNHQALRVFYAMVLYNLGRYEQ 79
Query: 59 ANQILEKV 66
++L K+
Sbjct: 80 GVELLLKI 87
Score = 33.2 bits (76), Expect = 0.047
Identities = 20/132 (15%), Positives = 45/132 (34%), Gaps = 30/132 (22%)
Query: 19 LGQYKQALGIYET-LRHLPNPPEDTE--FNIASCYFYLGMYLQANQILEKVPPSRAKTRL 75
LG QA+ YE + + E + S + LG Y +A +L
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANG--------- 53
Query: 76 SFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLA 135
++ + ++ A + + Y++ +++ +I+ + D
Sbjct: 54 --------------VKQFP---NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96
Query: 136 LNVYG-AMCYYK 146
+ Y A+ +Y
Sbjct: 97 IQSYKQAILFYA 108
Score = 30.8 bits (70), Expect = 0.31
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYY 145
EK++ + +D E L L S Y++A + + + AL V+ AM Y
Sbjct: 14 EKAI-ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY 72
Query: 146 KLDYYDVSQEQVAMYLAQKPTS 167
L Y+ E + +A+
Sbjct: 73 NLGRYEQGVELLLKIIAETSDD 94
Score = 30.8 bits (70), Expect = 0.31
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 379 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYY 438
EK++ + +D E L L S Y++A + + + AL V+ AM Y
Sbjct: 14 EKAI-ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY 72
Query: 439 KLDYYDVSQEQVAMYLAQKPTS 460
L Y+ E + +A+
Sbjct: 73 NLGRYEQGVELLLKIIAETSDD 94
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 35.9 bits (83), Expect = 0.009
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Query: 9 DAW--LGYCHFHLGQYKQALGIYETLRHLPNPPEDTE--FNIASCYFYLGMYLQANQILE 64
+ LG C LG Y+QAL Y + + F+ A C+ LG A
Sbjct: 53 RYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAECHLQLGDLDGAESGFY 110
Query: 65 KV 66
Sbjct: 111 SA 112
Score = 33.6 bits (77), Expect = 0.055
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 12 LGYCHFHLGQYKQALGIYETLRHL-PNPPEDTEFNIASCYFYLGMYLQA 59
LG+ + G++ A I++ L L + +C LG+Y QA
Sbjct: 24 LGFNQYQAGKWDDAQKIFQALCMLDHYDARYF-LGLGACRQSLGLYEQA 71
Score = 30.5 bits (69), Expect = 0.65
Identities = 18/135 (13%), Positives = 35/135 (25%), Gaps = 39/135 (28%)
Query: 20 GQYKQALGIYETLRHLPNPPEDTE--FNIASCYFYLGMYLQANQILEKVPPSRAKTRLSF 77
G G+ + E + + + G + A +I +
Sbjct: 5 GTLAMLRGL---------SEDTLEQLYALGFNQYQAGKWDDAQKIFQA------------ 43
Query: 78 HLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKR-ILLDHKDLLAL 136
L L L + Y++A+ Y L+D +
Sbjct: 44 -----------LCMLDHYDARYF---LGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89
Query: 137 NVYGAMCYYKLDYYD 151
+ A C+ +L D
Sbjct: 90 F-HAAECHLQLGDLD 103
Score = 29.7 bits (67), Expect = 0.97
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 397 LCLASIHFLRCHYQEAIDIYKR-ILLDHKDLLALNVYGAMCYYKLDYYD 444
L L + Y++A+ Y L+D + + A C+ +L D
Sbjct: 56 LGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF-HAAECHLQLGDLD 103
Score = 27.8 bits (62), Expect = 4.5
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 380 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKR-ILLDHKDLLALNVYGAMCYY 438
+L ED+LE+ L + + +A I++ +LDH D GA C
Sbjct: 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGA-CRQ 63
Query: 439 KLDYYD 444
L Y+
Sbjct: 64 SLGLYE 69
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 37.5 bits (86), Expect = 0.011
Identities = 36/199 (18%), Positives = 70/199 (35%), Gaps = 12/199 (6%)
Query: 3 NADSLTDAWLGYCHFHLGQYKQALGIYET-LRHLPNPPEDTEFNIASCYFYLGMYLQANQ 61
+ADSL + L G ++A+ +Y L P N+AS G +A
Sbjct: 8 HADSLNN--LANIKREQGNIEEAVRLYRKALEVFPEFAA-AHSNLASVLQQQGKLQEALM 64
Query: 62 ILEK---VPPSRAKTRLS-FHLSHKLGD-EKSLMEYHQKLE---DSLEEQLCLASIHFLR 113
++ + P+ A + + ++ D + +L Y + ++ + LASIH
Sbjct: 65 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 124
Query: 114 CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNL 173
+ EAI Y+ L D A C + + E++ ++ L
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 184
Query: 174 KACNTYKLFTSRAAENQLK 192
+ + + + K
Sbjct: 185 PSVHPHHSMLYPLSHGFRK 203
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 34.4 bits (79), Expect = 0.020
Identities = 10/61 (16%), Positives = 16/61 (26%), Gaps = 6/61 (9%)
Query: 9 DAW--LGYCHFHLGQYKQALGIYETLRHLPNPPEDTE--FNIASCYFYLGMYLQANQILE 64
+AW LG + A+ P+D +A + A L
Sbjct: 52 EAWRSLGLTQAENEKDGLAIIALN--HARMLDPKDIAVHAALAVSHTNEHNANAALASLR 109
Query: 65 K 65
Sbjct: 110 A 110
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 36.6 bits (85), Expect = 0.020
Identities = 44/442 (9%), Positives = 119/442 (26%), Gaps = 42/442 (9%)
Query: 9 DAW--LGYCHFHLGQYKQALGIYETLRHLPNPPE---DTEFNIASCYFYLGMYLQANQIL 63
+ LG++ A+ L + + + + + +
Sbjct: 74 KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDI 133
Query: 64 EKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIY 123
+ T LS + + D++ + + + +Y E+ +
Sbjct: 134 DTAT--ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA----NYDESNEAD 187
Query: 124 KRIL-----LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNT 178
K ++ L + + + ++ ++ K I+L
Sbjct: 188 KELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247
Query: 179 YKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEA---FDLIKNLEP 235
+ A +K + + S + + + + + E FD L+
Sbjct: 248 FLKNDPLGAHEDIKKAIE------LFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS 301
Query: 236 SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLR 295
+ Y + + + A F + + + + + +A +
Sbjct: 302 NNSSVYYHRGQMNFILQN-------YDQAGKDFDK--AKELDPENIFPYIQLACLAYREN 352
Query: 296 SFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISH 355
F D S K + FA+ + +A + + + ++ +
Sbjct: 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY----DLAIELENKLDGI 408
Query: 356 LTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLE---DSLEEQLCLASIHFLRCHYQEA 412
+P K L ++ + + S + ++ LA + + EA
Sbjct: 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEA 468
Query: 413 IDIYKR-ILLDHKDLLALNVYG 433
I +++ L L
Sbjct: 469 ITLFEESADLARTMEEKLQAIT 490
Score = 32.8 bits (75), Expect = 0.29
Identities = 54/344 (15%), Positives = 95/344 (27%), Gaps = 45/344 (13%)
Query: 12 LGYCHFHLGQYKQALGIY-ETLRHLPNPPEDTEFNIASCYFYLGMYLQA----NQILEKV 66
G F +Y A+ Y L +P N+++CY +G + + LE
Sbjct: 12 KGNQFFRNKKYDDAIKYYNWALELKEDP--VFYSNLSACYVSVGDLKKVVEMSTKALELK 69
Query: 67 PPS------RAKTRLSFHLSHKLGD-EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEA 119
P RA LG ++ + L + + R ++A
Sbjct: 70 PDYSKVLLRRASAN------EGLGKFADAMFDL-SVLSLNGDFNDASIEPMLERNLNKQA 122
Query: 120 IDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY 179
+ K D A + K + +A
Sbjct: 123 MSKLKEKFGDIDTATATPTELSTQPAKERKDK--------QENLPSVTSMASFFGIFKPE 174
Query: 180 KLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQ----EEHQEAFDLIKNLEP 235
F + N+ L++ L L PES K EE + + + L+
Sbjct: 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234
Query: 236 SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLR 295
+ + + G+ E +K A LF V MA
Sbjct: 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF----------PRVNSYIYMALIMADRN 284
Query: 296 SFKDVILYLS-SIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMF 338
+ Y ++K + + + Q L Y +A + F
Sbjct: 285 DSTEYYNYFDKALKLDSNNSSVYY-HRGQMNFILQNYDQAGKDF 327
Score = 32.4 bits (74), Expect = 0.34
Identities = 52/383 (13%), Positives = 109/383 (28%), Gaps = 55/383 (14%)
Query: 116 YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY---LAQKPTSRIALN 172
Y +AI Y L +D + + A CY + + V M L KP L
Sbjct: 22 YDDAIKYYNWALELKEDPVFYSNLSA-CYVSVGDLK---KVVEMSTKALELKPDYSKVLL 77
Query: 173 LKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN 232
+A L A L ++S+ D E L + + +E F I
Sbjct: 78 RRASANEGLGKFADAMFDLS--VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDT 135
Query: 233 LEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFF 292
+ + A + ++ S + + +F+ + + ++ + + +
Sbjct: 136 ATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195
Query: 293 LL------------RSFKDVILYLSSIKSYYTSDDSFNFNFAQA-------KCALGQYKE 333
L SF D+ A + K
Sbjct: 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLG 255
Query: 334 AEEMFLLVQNEGLK---NDYVYISHLTKCSPSRAKTRLSFHLSHKLGD-EKSLMEYHQKL 389
A E + ++ YI A D + + + L
Sbjct: 256 AHEDI----KKAIELFPRVNSYIY--------MALIMA------DRNDSTEYYNYFDKAL 297
Query: 390 E---DSLEEQLCLASIHFLRCHYQEAIDIYKR-ILLDHKDLLALNVYGAMCYYKLDYYDV 445
+ ++ ++F+ +Y +A + + LD +++ Y+ + +D
Sbjct: 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLA-CLAYRENKFDD 356
Query: 446 SQEQVAMYLAQKPTSRIALNLKA 468
+ + + P + N A
Sbjct: 357 CETLFSEAKRKFPEAPEVPNFFA 379
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 36.6 bits (85), Expect = 0.021
Identities = 63/441 (14%), Positives = 123/441 (27%), Gaps = 45/441 (10%)
Query: 8 TDAW--LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEK 65
+ A + LG + A+ L + + QA ++L +
Sbjct: 93 SKALLRRASANESLGNFTDAMFDLSVLSLNGDFDG----ASIEPMLERNLNKQAMKVLNE 148
Query: 66 VPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKR 125
S L SL + + LE S +Y A +
Sbjct: 149 NLSKDEG-----RGSQVLPSNTSLASFFGIFDSHLEVSSVNTSS-----NYDTAYALLSD 198
Query: 126 ILLDHKDLLALNVYGAMCYYK--LDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT 183
L A D Y + + + +AL +
Sbjct: 199 ALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258
Query: 184 SRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIK---NLEPSVPQE 240
A+ L+ + + P S + L + +E QE F + +L P P
Sbjct: 259 LLDAQVLLQESI------NLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPT 312
Query: 241 YILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDV 300
Y + + + K A+ FQ S + V +A + F +
Sbjct: 313 YYHRGQMYFILQD-------YKNAKEDFQKAQSLNP--ENVYPYIQLACLLYKQGKFTES 363
Query: 301 ILYLS-SIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFL--LVQNEGLKNDYVYISHLT 357
+ + + + T + FA+ G + A + + E + +V I L
Sbjct: 364 EAFFNETKLKFPTLPEVPT-FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422
Query: 358 KCSPSRAKTRLSFHLSHKLGD-EKSLMEYHQKLE---DSLEEQLCLASIHFLRCHYQEAI 413
+ A+ ++ + E S + ++ LA + EAI
Sbjct: 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAI 482
Query: 414 DIYKR-ILLDHKDLLALNVYG 433
++++ +L L
Sbjct: 483 ELFEDSAILARTMDEKLQATT 503
Score = 33.9 bits (78), Expect = 0.13
Identities = 64/458 (13%), Positives = 124/458 (27%), Gaps = 58/458 (12%)
Query: 12 LGYCHFHLGQYKQALGIY-ETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV---P 67
G F + +A+ Y + PN P NI++CY G + + K
Sbjct: 31 RGNHFFTAKNFNEAIKYYQYAIELDPNEPV-FYSNISACYISTGDLEKVIEFTTKALEIK 89
Query: 68 PSRAKT--RLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKR 125
P +K R + LG+ M L + + R ++A+ +
Sbjct: 90 PDHSKALLRRASAN-ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNE 148
Query: 126 ILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSR 185
L + + S +A + + ++ + Y
Sbjct: 149 NL-------------SKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDT---- 191
Query: 186 AAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKA 245
A L L + + + L A + L +
Sbjct: 192 -AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTG 250
Query: 246 VVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVI-LYL 304
+ + AQ L Q + ++ +A + + ++ +
Sbjct: 251 IFHFLKNN-------LLDAQVLLQESINLHPTPNSY---IFLALTLADKENSQEFFKFFQ 300
Query: 305 SSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRA 364
++ ++ + Q L YK A+E F Q+ L + VY ++
Sbjct: 301 KAVDLNPEYPPTYY-HRGQMYFILQDYKNAKEDFQKAQS--LNPENVY-PYIQLAC---- 352
Query: 365 KTRLSFHLSHKLGD-EKSLMEYHQKLE---DSLEEQLCLASIHFLRCHYQEAIDIYKR-I 419
L +K G +S +++ E A I R + AI Y
Sbjct: 353 -------LLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405
Query: 420 LLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 457
L+ G K Q L ++
Sbjct: 406 RLEEVQEKIHVGIGP-LIGKATILARQSSQDPTQLDEE 442
Score = 33.2 bits (76), Expect = 0.22
Identities = 21/190 (11%), Positives = 49/190 (25%), Gaps = 18/190 (9%)
Query: 3 NADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQA--- 59
D Y L L +F L A
Sbjct: 206 ATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVL 265
Query: 60 -NQILEKVPPSRAKTRLSFHLSHKLGD-EKSLMEYHQKLE---DSLEEQLCLASIHFLRC 114
+ + P + L+ L + ++ + + ++ + ++F+
Sbjct: 266 LQESINLHPTPNSYIFLALTL-ADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ 324
Query: 115 HYQEAIDIYKR-ILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY---LAQKPTSRIA 170
Y+ A + +++ L+ +++ YK + E A + + PT
Sbjct: 325 DYKNAKEDFQKAQSLNPENVYPYIQLA-CLLYKQGKFT---ESEAFFNETKLKFPTLPEV 380
Query: 171 LNLKACNTYK 180
A
Sbjct: 381 PTFFA-EILT 389
Score = 29.7 bits (67), Expect = 2.5
Identities = 44/386 (11%), Positives = 99/386 (25%), Gaps = 45/386 (11%)
Query: 106 LASIHFLRCHYQEAIDIYKRIL-LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY---L 161
+ F ++ EAI Y+ + LD + + + A CY + + + L
Sbjct: 31 RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISA-CYISTGDLE---KVIEFTTKAL 86
Query: 162 AQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQE 221
KP AL +A L A L + S+ E L + +
Sbjct: 87 EIKPDHSKALLRRASANESLGNFTDAMFDLSVL--SLNGDFDGASIEPMLERNLNKQAMK 144
Query: 222 EHQEAFDLIKN----LEPSVPQ--EYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQ 275
E + + PS + + + S A L +
Sbjct: 145 VLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLY 204
Query: 276 SECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAE 335
S D + + + + +A+
Sbjct: 205 SATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALC-YTGIFHFLKNNLLDAQ 263
Query: 336 EMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGD-EKSLMEYHQKLE---D 391
+ E + S++ + ++ + + ++ +
Sbjct: 264 VLL----QESINLHPTPNSYIFLAL-----------TLADKENSQEFFKFFQKAVDLNPE 308
Query: 392 SLEEQLCLASIHFLRCHYQEAIDIYKR-ILLDHKDLLALNVYGAMCYYKLDYYDVSQEQV 450
++F+ Y+ A + +++ L+ +++ YK + E
Sbjct: 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA-CLLYKQGKFT---ESE 364
Query: 451 AMY---LAQKPTSRIALNLKACNTYK 473
A + + PT A
Sbjct: 365 AFFNETKLKFPTLPEVPTFFA-EILT 389
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.027
Identities = 56/382 (14%), Positives = 103/382 (26%), Gaps = 139/382 (36%)
Query: 191 LKPIL-------VSILPPLIDVIPESRLNLVIYHLKQEEHQEAF---------DLIKNLE 234
+P+ +L +P + + QE F + E
Sbjct: 6 TRPLTLSHGSLEHVLL------VPTA------SFFIASQLQEQFNKILPEPTEGFAADDE 53
Query: 235 PSVPQEYI---LKAVVQVTIGQDTGSREMV-KAAQALFQ-----------LVGSSQSECD 279
P+ P E + L V + G + V F+ L E D
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 280 TVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFN-----------FNFAQAK--- 325
T + K++I K+Y T+ F
Sbjct: 114 TTLVKT------------KELI------KNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 326 -CAL--GQ-----Y-KEAEEMF----LLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHL 372
A+ GQ Y +E +++ +LV D + S T R
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVG------DLIKFSAETLSELIRTTLDAEKVF 209
Query: 373 SHKLGDEKSLMEYHQKLEDSLEEQLCLASIHF-------LRCHYQEAIDIYKRIL-LDHK 424
+ L + +E D ++ L I L HY + ++L
Sbjct: 210 TQGL-NILEWLENPSNTPD--KDYLLSIPISCPLIGVIQL-AHYV----VTAKLLGFTPG 261
Query: 425 DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQL 484
+L + + GA + + + A+ +A ++++ F + +
Sbjct: 262 ELRS-YLKGATGHSQ----GL---VTAVAIA------------ETDSWESFF-VSVRKAI 300
Query: 485 KPILVSAG-------PRVRFPP 499
+L G P PP
Sbjct: 301 T-VLFFIGVRCYEAYPNTSLPP 321
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 34.4 bits (80), Expect = 0.032
Identities = 24/148 (16%), Positives = 57/148 (38%), Gaps = 28/148 (18%)
Query: 4 ADSLTDAWLGYCHFHLGQYKQALGIYET----LRHLPNPPE--DTEFNIASCYFYLG--- 54
+ + LG H+ LG ++ A+ +E + + N+ + Y +LG
Sbjct: 9 GRAFGN--LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFE 66
Query: 55 ----MYLQANQILEKV--PPSRAKTRLSFHLSH-KLGDEKSLMEYHQK-------LEDSL 100
Y + + ++ A++ S ++ L D + ++YH K L+D +
Sbjct: 67 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 126
Query: 101 EEQLC---LASIHFLRCHYQEAIDIYKR 125
E L + + ++ +A+ ++
Sbjct: 127 GEGRACWSLGNAYTALGNHDQAMHFAEK 154
Score = 31.0 bits (71), Expect = 0.49
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 13/68 (19%)
Query: 12 LGYCHFHLGQYKQALGIYE----TLRHLPNPPE--DTEFNIASCYFYLG-------MYLQ 58
LG + L Y++A+ + + L + +++ + Y LG +
Sbjct: 95 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154
Query: 59 ANQILEKV 66
+I +V
Sbjct: 155 HLEISREV 162
Score = 27.9 bits (63), Expect = 5.3
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 2 GNADSLTDAWLGYCHFHLGQYKQALGIYE 30
G + LG + LG + QA+ E
Sbjct: 127 GEGRACWS--LGNAYTALGNHDQAMHFAE 153
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 35.6 bits (83), Expect = 0.032
Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 28/139 (20%)
Query: 4 ADSLTDAWLGYCHFHLGQYKQALGIYE-----TLRHL-PNPPE--DTEFNIASCYFYLGM 55
+L + L + G+Y+ A+ + + + + P+ +A Y
Sbjct: 27 LRTLHN--LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK 84
Query: 56 YLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCH 115
Y A +L R KT LG + H + +L LA ++ R
Sbjct: 85 YKDAANLLNDALAIREKT---------LGKD------HPAVAATLNN---LAVLYGKRGK 126
Query: 116 YQEAIDIYKRILLDHKDLL 134
Y+EA + KR L + +L
Sbjct: 127 YKEAEPLCKRALEIREKVL 145
Score = 31.7 bits (73), Expect = 0.49
Identities = 23/164 (14%), Positives = 48/164 (29%), Gaps = 49/164 (29%)
Query: 12 LGYCHFHLGQYKQALGIYE-----TLRHL-PNPPE--DTEFNIASCYFYLG-------MY 56
L + G+YK+A + + + L + P+ N+A G Y
Sbjct: 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 176
Query: 57 LQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHY 116
+A +I + LG + + + LAS + + +
Sbjct: 177 QRALEIYQTK----------------LGPD------DPNVAKTKN---NLASCYLKQGKF 211
Query: 117 QEAIDIYKRILL---------DHKDLLALNVYGAMCYYKLDYYD 151
++A +YK IL + + ++
Sbjct: 212 KQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQK 255
Score = 28.7 bits (65), Expect = 4.1
Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 29/125 (23%)
Query: 12 LGYCHFHLGQYKQALGIYET------LRHL-PNPPE--DTEFNIASCYFYLGMYLQANQI 62
L C+ G++KQA +Y+ R E + G
Sbjct: 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260
Query: 63 LEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDI 122
E G K+ + +L+ L +++ + ++ A +
Sbjct: 261 GEYG-----------------GWYKACKVDSPTVTTTLKN---LGALYRRQGKFEAAETL 300
Query: 123 YKRIL 127
+ +
Sbjct: 301 EEAAM 305
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 35.6 bits (83), Expect = 0.032
Identities = 26/178 (14%), Positives = 58/178 (32%), Gaps = 18/178 (10%)
Query: 12 LGYCHFHLGQYKQALGIYET-LRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV---P 67
L + + G ++ A R P+ ++S +F ++
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNT-GVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 68 PSRAKTRLSF-HLSHKLGD-EKSLMEYHQKLE---DSLEEQLCLASIHFLRCHYQEAIDI 122
P A+ + ++ + G ++++ Y L D ++ + LA+ + A+
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 123 YKRIL-LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY---LAQKPTSRIALNLKAC 176
Y L + + G L + E A Y + +P +A + C
Sbjct: 124 YVSALQYNPDLYCVRSDLG-NLLKALGRLE---EAKACYLKAIETQPNFAVAWSNLGC 177
Score = 28.3 bits (64), Expect = 6.4
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 399 LASIHFLRCHYQEAIDIYKRIL-LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 457
LA + ++ A ++ + + L + + +++ D S + + Q
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSS-IHFQCRRLDRSAHFSTLAIKQN 63
Query: 458 PTSRIALNLKACNTYK 473
P A + N YK
Sbjct: 64 PLLAEAYSNLG-NVYK 78
Score = 27.9 bits (63), Expect = 7.7
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 9 DAW--LGYCHFHLGQYKQALGIYET-LRHLPNPPEDTEFNIASCYFYLGMYLQANQILEK 65
DA+ L G +A Y T LR P + + N+A+ G +A ++ K
Sbjct: 272 DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD-SLNNLANIKREQGNIEEAVRLYRK 330
Query: 66 V 66
Sbjct: 331 A 331
Score = 27.9 bits (63), Expect = 7.9
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 9 DAW--LGYCHFHLGQYKQALGIYE-TLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEK 65
D+ L G ++A+ +Y L P N+AS G +A ++
Sbjct: 306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA-AHSNLASVLQQQGKLQEALMHYKE 364
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 34.9 bits (81), Expect = 0.037
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 9 DAW--LGYCHFHLGQYKQALGIYE-TLRHLPNPPEDTEFNIASCYFYLGMYLQA----NQ 61
A G C GQ+ A + +L P P +A G A +
Sbjct: 114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP-AFKELARTKMLAGQLGDADYYFKK 172
Query: 62 ILEKVPPSRAKTR-LSFHLSHKLGDEKSLMEYHQKL 96
+V +A L + ++ LG+ ++ EY +L
Sbjct: 173 YQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 34.9 bits (81), Expect = 0.041
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 6/90 (6%)
Query: 12 LGYCHFHLGQYKQALGIYET-LRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV---- 66
LG + + QA +E LR N P +A + Y+ A Q +
Sbjct: 147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPS-VALEMADLLYKEREYVPARQYYDLFAQGG 205
Query: 67 PPSRAKTRLSFHLSHKLGDEKSLMEYHQKL 96
+ L L+ D + Y +L
Sbjct: 206 GQNARSLLLGIRLAKVFEDRDTAASYGLQL 235
Score = 29.2 bits (66), Expect = 2.7
Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 18/156 (11%)
Query: 318 NFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLG 377
N+ +Y+EA + L + L + SR L +S ++
Sbjct: 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER-----------SRVFENLGL-VSLQMK 155
Query: 378 D-EKSLMEYHQKLE---DSLEEQLCLASIHFLRCHYQEAIDIYKR-ILLDHKDLLALNVY 432
++ + + L + L +A + + Y A Y ++ +L
Sbjct: 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLL-L 214
Query: 433 GAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA 468
G + D + P S +A
Sbjct: 215 GIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA 250
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 35.6 bits (82), Expect = 0.041
Identities = 22/162 (13%), Positives = 41/162 (25%), Gaps = 17/162 (10%)
Query: 20 GQYKQALGIYET-LRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVP---PSRAKTRL 75
+ L +RH P +A +G +++ P +
Sbjct: 3 ADGPRELLQLRAAVRHRPQDF-VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV- 60
Query: 76 SFHLSHKLGDEKSLMEYHQKLEDSLEEQ-------LCLASIHFLRCHYQEAIDIYKRILL 128
L ++ E L+ + + L L + A Y R
Sbjct: 61 -ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119
Query: 129 ---DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 167
+ + A + DV QV +AQ +
Sbjct: 120 LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161
Score = 33.7 bits (77), Expect = 0.14
Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 13/106 (12%)
Query: 10 AWLGYCHFHLGQYKQALGIYET-LRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPP 68
WLG+ GQ + A Y + LP P + + L + + + +V
Sbjct: 95 LWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY-ITAQLLNWRRRLCDWRALDVLSAQVRA 153
Query: 69 SRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRC 114
+ A+ + L + S EQL A
Sbjct: 154 AVAQGVGAVEPFAFLS-----------EDASAAEQLACARTRAQAI 188
Score = 28.3 bits (63), Expect = 8.3
Identities = 8/76 (10%), Positives = 16/76 (21%), Gaps = 3/76 (3%)
Query: 106 LASIHFLRCHYQEAIDIYKRIL-LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 164
LA +R L L A+ G + + + +
Sbjct: 29 LADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG-RVRWTQQRHAEAAVLLQQASDAA 87
Query: 165 PTSRIALNLKACNTYK 180
P + +
Sbjct: 88 PEHPGIALWLG-HALE 102
Score = 28.3 bits (63), Expect = 8.3
Identities = 8/76 (10%), Positives = 16/76 (21%), Gaps = 3/76 (3%)
Query: 399 LASIHFLRCHYQEAIDIYKRIL-LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 457
LA +R L L A+ G + + + +
Sbjct: 29 LADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG-RVRWTQQRHAEAAVLLQQASDAA 87
Query: 458 PTSRIALNLKACNTYK 473
P + +
Sbjct: 88 PEHPGIALWLG-HALE 102
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 34.1 bits (78), Expect = 0.044
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 12 LGYCHFHLGQYKQALGIYETLRHLPNPPE-DTEFNIASCYFYLGMYLQANQILEK 65
L + + G Y+ A +++ L L + + + +C +G Y A
Sbjct: 27 LAFNQYQSGXYEDAHXVFQALCVL-DHYDSRFFLGLGACRQAMGQYDLAIHSYSY 80
Score = 30.3 bits (68), Expect = 0.85
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 376 LGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKR-ILLDHKDLLALNVYGA 434
++ ++ D+LE+ LA + Y++A +++ +LDH D GA
Sbjct: 4 GSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGA 63
Query: 435 MCYYKLDYYD 444
C + YD
Sbjct: 64 -CRQAMGQYD 72
Score = 28.3 bits (63), Expect = 3.2
Identities = 17/157 (10%), Positives = 36/157 (22%), Gaps = 28/157 (17%)
Query: 20 GQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHL 79
G G L + + + +++A + G Y A+ + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQA-------------- 46
Query: 80 SHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKR-ILLDHKDLLALNV 138
L L L + Y AI Y ++D +
Sbjct: 47 ---------LCVLDHYDSRFF---LGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94
Query: 139 YGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA 175
C + ++ + + L
Sbjct: 95 AA-ECLLQXGELAEAESGLFLAQELIANXPEFXELST 130
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 33.1 bits (76), Expect = 0.054
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 11 WLGYCHFHLGQYKQALGIYETL-RHLPNPPE--DTEFNIASCYFYLGMYLQANQILEKV 66
WLG ++ ++ A + L P + + + G +A Q L++V
Sbjct: 44 WLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQV 102
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 32.9 bits (75), Expect = 0.13
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 12/106 (11%)
Query: 81 HKLGDEKSLMEYHQKLEDSLEEQ-------LCLASIHFLRCHYQEAIDIYKRIL-LDHKD 132
H+ +++ Q L+D + L + + Y ++ Y++ L L ++
Sbjct: 18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN 77
Query: 133 LLALNVYGAMCYYKLDYYDVSQEQVAMY---LAQKPTSRIALNLKA 175
+ YY+ + + + AM LA AL L A
Sbjct: 78 AELYAALATVLYYQASQHM-TAQTRAMIDKALALDSNEITALMLLA 122
Score = 32.9 bits (75), Expect = 0.13
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 12/106 (11%)
Query: 374 HKLGDEKSLMEYHQKLEDSLEEQ-------LCLASIHFLRCHYQEAIDIYKRIL-LDHKD 425
H+ +++ Q L+D + L + + Y ++ Y++ L L ++
Sbjct: 18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN 77
Query: 426 LLALNVYGAMCYYKLDYYDVSQEQVAMY---LAQKPTSRIALNLKA 468
+ YY+ + + + AM LA AL L A
Sbjct: 78 AELYAALATVLYYQASQHM-TAQTRAMIDKALALDSNEITALMLLA 122
Score = 30.6 bits (69), Expect = 0.85
Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 31/124 (25%)
Query: 9 DAW--LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLG---MYLQANQIL 63
+ W LG + Y +L Y L + +A+ +Y M Q ++
Sbjct: 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMI 104
Query: 64 EKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIY 123
+K L+ + +LM LAS F++ +Y +AI+++
Sbjct: 105 DKA------------LALDSNEITALML--------------LASDAFMQANYAQAIELW 138
Query: 124 KRIL 127
++++
Sbjct: 139 QKVM 142
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 33.1 bits (75), Expect = 0.20
Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 20/127 (15%)
Query: 40 EDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDS 99
E + Y + I A+ L ++S ++ +
Sbjct: 213 EQCILYLGPRYGFGEAGKPKFGI-----EPNAELIYEVTLKSFEKAKESWEMDTKEKLEQ 267
Query: 100 LEEQLCLASIHFLRCHYQEAIDIYKRIL--LDH-------------KDLLALNVYGAMCY 144
+++F Y +A+ Y +I+ L+ LLA + AMCY
Sbjct: 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327
Query: 145 YKLDYYD 151
KL Y
Sbjct: 328 LKLREYT 334
Score = 32.7 bits (74), Expect = 0.29
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 15/99 (15%)
Query: 361 PSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL 420
A+ L ++S ++ + +++F Y +A+ Y +I+
Sbjct: 236 EPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIV 295
Query: 421 --LDH-------------KDLLALNVYGAMCYYKLDYYD 444
L+ LLA + AMCY KL Y
Sbjct: 296 SWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 334
Score = 28.5 bits (63), Expect = 6.3
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 19/76 (25%)
Query: 13 GYCHFHLGQYKQALGIYE-TLRHLPNPPEDTE--------------FNIASCYFYLGMYL 57
G +F G+Y QA+ Y + L +E N+A CY L Y
Sbjct: 275 GTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 334
Query: 58 QA----NQILEKVPPS 69
+A ++ L +
Sbjct: 335 KAVECCDKALGLDSAN 350
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat
motif, helis-turn-helix, cell cycle division, mitosis,
TPR repeat; 2.50A {Homo sapiens}
Length = 167
Score = 31.6 bits (71), Expect = 0.31
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 25/96 (26%)
Query: 11 WLGYCHFHLGQYKQALGIYETLRHL-----------------------PNPPEDTE--FN 45
+ FH +Y+ A+ Y P + E +
Sbjct: 68 YHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYK 127
Query: 46 IASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSH 81
+A CY L A IL+ +P + +++ L++
Sbjct: 128 LAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLAN 163
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 32.0 bits (72), Expect = 0.37
Identities = 9/65 (13%), Positives = 16/65 (24%), Gaps = 3/65 (4%)
Query: 5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPE---DTEFNIASCYFYLGMYLQANQ 61
G +L + +A P + +A G A
Sbjct: 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA 229
Query: 62 ILEKV 66
+LE +
Sbjct: 230 LLEWL 234
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 32.1 bits (72), Expect = 0.41
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 12 LGYCHFHLGQYKQALGIYET-LRHLPNPPEDTE------FNIASCYFYLGMYLQANQILE 64
+ + G K+ + ++E L+ L ++ E +N A + Y ++ +
Sbjct: 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220
Query: 65 K 65
K
Sbjct: 221 K 221
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 31.6 bits (72), Expect = 0.45
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 18/77 (23%)
Query: 7 LTDAW--LGYCHFHLGQYKQALGIYE--------------TLRHLPNPPEDTE--FNIAS 48
L A+ G ++ +Y A+ + + L E +NIA
Sbjct: 70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 129
Query: 49 CYFYLGMYLQANQILEK 65
Y + +A + L
Sbjct: 130 MYAKKEEWKKAEEQLAL 146
Score = 29.7 bits (67), Expect = 1.6
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV 66
G +K AL + + FNI Y L +A + +
Sbjct: 12 EGVLAADKKDWKGALDAFSAV--QDPHSR-ICFNIGCMYTILKNMTEAEKAFTRS 63
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 31.0 bits (71), Expect = 0.72
Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 26/131 (19%)
Query: 12 LGYCHFHLGQYKQALGIYE-----TLRHL-PNPPE--DTEFNIASCYFYLGMYLQANQIL 63
+ L A+ + + + + P+ +A Y Y +A +L
Sbjct: 7 HHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLL 66
Query: 64 EKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIY 123
R KT LG + H + +L LA ++ R Y+EA +
Sbjct: 67 NDALAIREKT---------LGKD------HPAVAATLNN---LAVLYGKRGKYKEAEPLC 108
Query: 124 KRILLDHKDLL 134
KR L + +L
Sbjct: 109 KRALEIREKVL 119
Score = 31.0 bits (71), Expect = 0.89
Identities = 36/169 (21%), Positives = 56/169 (33%), Gaps = 46/169 (27%)
Query: 4 ADSLTDAWLGYCHFHLGQYKQALGIYE-----TLRHL-PNPPE--DTEFNIASCYFYLG- 54
A L L + +YK+A + + L + P T N+A Y G
Sbjct: 43 ATMLNI--LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100
Query: 55 ------MYLQANQILEKV----PPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQL 104
+ +A +I EKV P AK + L L + K E+
Sbjct: 101 YKEAEPLCKRALEIREKVLGKFHPDVAKQL------NNLA---LLCQNQGKAEEVEY--- 148
Query: 105 CLASIHFLRCHYQEAIDIYKRIL-LDHKDLLA-LNVYGAMCYYKLDYYD 151
+Y+ A++IY L D ++ N + CY K Y
Sbjct: 149 ----------YYRRALEIYATRLGPDDPNVAKTKNNLAS-CYLKQGKYQ 186
Score = 30.2 bits (69), Expect = 1.3
Identities = 27/139 (19%), Positives = 46/139 (33%), Gaps = 42/139 (30%)
Query: 4 ADSLTDAWLGYCHFHLGQYKQALGIYE-----TLRHL-PNPPE--DTEFNIASCYFYLG- 54
A +L + L + G+YK+A + + + L P+ N+A G
Sbjct: 85 AATLNN--LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK 142
Query: 55 ------MYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLAS 108
Y +A +I LG + + + LAS
Sbjct: 143 AEEVEYYYRRALEIYATR----------------LGPD------DPNVAKTKNN---LAS 177
Query: 109 IHFLRCHYQEAIDIYKRIL 127
+ + YQ+A +YK IL
Sbjct: 178 CYLKQGKYQDAETLYKEIL 196
Score = 29.8 bits (68), Expect = 1.9
Identities = 11/125 (8%), Positives = 29/125 (23%), Gaps = 29/125 (23%)
Query: 12 LGYCHFHLGQYKQALGIYE------TLRHL-PNPPE--DTEFNIASCYFYLGMYLQANQI 62
L C+ G+Y+ A +Y+ + + + +
Sbjct: 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY 234
Query: 63 LEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDI 122
E K+ + +L L +++ + + A +
Sbjct: 235 GEYG-----------------SWYKACKVDSPTVNTTLR---SLGALYRRQGKLEAAHTL 274
Query: 123 YKRIL 127
Sbjct: 275 EDCAS 279
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 30.7 bits (70), Expect = 0.96
Identities = 21/160 (13%), Positives = 37/160 (23%), Gaps = 28/160 (17%)
Query: 9 DAW--LGYCHFHLGQYKQALGIYET-LRHLPNPPEDTEFNIASCYFYLGMYLQANQILEK 65
+AW LG + A+ P +A + A L
Sbjct: 56 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA-VHAALAVSHTNEHNANAALASLRA 114
Query: 66 V------------PPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEE----------- 102
+A + + +++ L
Sbjct: 115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174
Query: 103 QLCLASIHFLRCHYQEAIDIYKR-ILLDHKDLLALNVYGA 141
L ++ L +Y A +R + L D N GA
Sbjct: 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGA 214
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 30.6 bits (69), Expect = 1.1
Identities = 18/161 (11%), Positives = 39/161 (24%), Gaps = 26/161 (16%)
Query: 12 LGYCHFHLGQYKQALGIY----ETLRHLPNPPE--DTEFNIASCYFYLGMYLQANQILEK 65
+ Q +QA Y E + + L +A Q +EK
Sbjct: 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEK 101
Query: 66 V---------PPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQ----------LCL 106
P + A + D + +Q+ E +
Sbjct: 102 ASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161
Query: 107 ASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKL 147
+ + + + EA ++ +K++
Sbjct: 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYP-TCYKKCIAQ 201
Score = 30.6 bits (69), Expect = 1.2
Identities = 5/60 (8%), Positives = 16/60 (26%), Gaps = 6/60 (10%)
Query: 12 LGYCHFHLGQYKQALGIYET----LRHLPNPPE--DTEFNIASCYFYLGMYLQANQILEK 65
++ +A + + + N P + Y+ A + + +
Sbjct: 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 30.8 bits (70), Expect = 1.2
Identities = 26/162 (16%), Positives = 45/162 (27%), Gaps = 30/162 (18%)
Query: 9 DAW--LGYCHFHLGQYKQALGIYET-LRHLPNPPEDTEFNIASCYFYLGMYLQANQILEK 65
+AW LG Q A+ L P+ +A + + QA +IL
Sbjct: 99 EAWQYLGTTQAENEQELLAISALRRCLELKPDNQT-ALMALAVSFTNESLQRQACEILRD 157
Query: 66 V------------PPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEE----------- 102
P S ++ ++++
Sbjct: 158 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 217
Query: 103 --QLCLASIHFLRCHYQEAIDIYKR-ILLDHKDLLALNVYGA 141
Q L + L Y +A+D + + + D L N GA
Sbjct: 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGA 259
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.4
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 13/35 (37%)
Query: 222 EHQEAFDLIKNLE-------P-SVPQEYILKAVVQ 248
E Q +K L+ S P +KA ++
Sbjct: 18 EKQA----LKKLQASLKLYADDSAPA-LAIKATME 47
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 30.4 bits (68), Expect = 1.5
Identities = 23/147 (15%), Positives = 43/147 (29%), Gaps = 27/147 (18%)
Query: 22 YKQALGIYETLRHLPNPPEDTE--FNIASCYFYLGMYLQANQILEKV---------PPSR 70
+ +A + N E C+ G + A LE
Sbjct: 60 FLKAADYQKKAG---NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116
Query: 71 AKT--RLSFHLSHKLGDEKSLMEYHQKLEDSLEEQ----------LCLASIHFLRCHYQE 118
A L L + L D ++ ++ + + + A + L Y E
Sbjct: 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176
Query: 119 AIDIYKRILLDHKDLLALNVYGAMCYY 145
A DIY ++ + L+ + Y+
Sbjct: 177 ASDIYSKL-IKSSMGNRLSQWSLKDYF 202
>2y3m_A Emhofq, protein transport protein HOFQ; secretin, DNA uptake,
competence; 2.30A {Aggregatibacter
actinomycetemcomitans}
Length = 175
Score = 29.2 bits (65), Expect = 1.8
Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 6/134 (4%)
Query: 108 SIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 167
S+ + + K L G + K D ++
Sbjct: 43 SLQLENVDLDQLFRS----VAKIKQLDLWQENGIYYFTKGDTNTKFAGKMEEPFPLSLPM 98
Query: 168 RIALNLKACNTYKLFTSRAAE--NQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQE 225
T KL ++A+E L S+L P + + R NL++ + +
Sbjct: 99 AEEPAQLNTATIKLHFAKASEVMKSLTGGSGSLLSPNGSITFDDRSNLLLIQDEPRSVRN 158
Query: 226 AFDLIKNLEPSVPQ 239
LIK L+ + Q
Sbjct: 159 IKKLIKELDKPIEQ 172
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 29.5 bits (67), Expect = 2.0
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 101 EEQLCLASIHFLRCHYQEAIDIYKRIL-LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAM 159
+ + A F +Y EAI+++ ++ + N +CYY+L YD++Q+ +
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRA-VCYYELAKYDLAQKDIET 62
Query: 160 YL 161
Y
Sbjct: 63 YF 64
Score = 29.5 bits (67), Expect = 2.0
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 394 EEQLCLASIHFLRCHYQEAIDIYKRIL-LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAM 452
+ + A F +Y EAI+++ ++ + N +CYY+L YD++Q+ +
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRA-VCYYELAKYDLAQKDIET 62
Query: 453 YL 454
Y
Sbjct: 63 YF 64
Score = 28.8 bits (65), Expect = 3.4
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 3 NADSLTDAWLGYCHFHLGQYKQALGIYE-TLRHLPNPPEDTEFNIASCYFYLGMYLQANQ 61
N D F Y +A+ ++ N P A CY+ L Y A +
Sbjct: 2 NDDVEFR--YADFLFKNNNYAEAIEVFNKLEAKKYNSPY-IYNRRAVCYYELAKYDLAQK 58
Query: 62 ILEK 65
+E
Sbjct: 59 DIET 62
Score = 28.4 bits (64), Expect = 4.8
Identities = 17/190 (8%), Positives = 44/190 (23%), Gaps = 28/190 (14%)
Query: 12 LGYCHFHLGQYKQALGIYETLRH-LPNPPEDTE--FNIASCYFYLGMYLQA----NQILE 64
C++ L +Y A ET + + G A ++
Sbjct: 43 RAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD 102
Query: 65 KVPP------SRAKTRLSFHLSHKLGD-EKSLMEYHQKLE---DSLEEQLCLASIHFLRC 114
+ + G+ ++ +++ + L ++
Sbjct: 103 RDTTRLDMYGQIGSYF------YNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK 156
Query: 115 HYQEAIDIYKRIL-LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY---LAQKPTSRIA 170
Y +A + ++L L + + A D Y +
Sbjct: 157 EYVKADSSFVKVLELKPNIYIGYL-WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215
Query: 171 LNLKACNTYK 180
+ +
Sbjct: 216 YKDELIEANE 225
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 30.0 bits (67), Expect = 2.1
Identities = 19/170 (11%), Positives = 47/170 (27%), Gaps = 10/170 (5%)
Query: 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV---PP 68
G L ++ L + L + L + +L + P
Sbjct: 571 NGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 630
Query: 69 SRAKTRLSFHLSH-KLGD-EKSLMEYHQKLEDSLEEQLCLASIHFLRC---HYQEAIDIY 123
++ S L ++ L Q + ++ + +AS + Q + +
Sbjct: 631 AQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 690
Query: 124 KRIL-LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN 172
+ L + ++A+ L+ + P +A+
Sbjct: 691 CQAHGLTQEQVVAIASNN-GGKQALETVQRLLPVLCQAHGLTPDQVVAIA 739
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 29.4 bits (67), Expect = 2.1
Identities = 25/186 (13%), Positives = 48/186 (25%), Gaps = 44/186 (23%)
Query: 9 DAW--LGYCHFHLGQYKQALGIYET-LRHLPNP--------------------------- 38
D G + Q+ +A+ Y +
Sbjct: 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAV 65
Query: 39 ---PEDTE--FNIASCYFYLGMYLQA----NQILEKVPPSRAKTRLSFHLSHKLGDEKSL 89
E I+ + +G + +E S + R + L+ EK L
Sbjct: 66 EQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKEL 125
Query: 90 MEYHQKLE---DSLEEQLCLASIHFLRCHYQEAIDIYKR-ILLDHKDLLALNVYGAMCYY 145
+ + + EE +F + + A+ Y I +D + A
Sbjct: 126 KKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS-NRAAALA 184
Query: 146 KLDYYD 151
KL +
Sbjct: 185 KLMSFP 190
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 29.6 bits (67), Expect = 2.3
Identities = 27/157 (17%), Positives = 43/157 (27%), Gaps = 16/157 (10%)
Query: 9 DAW--LGYCHFHLGQYKQALGIYE-TLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEK 65
+ + LG G + A ++ L P N +Y G A L
Sbjct: 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY-AHLNRGIALYYGGRDKLAQDDLLA 136
Query: 66 V---PPSRAKTRLSFHLSH-KLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRC------H 115
P+ L +L+ KL ++++ Q E S +EQ + F
Sbjct: 137 FYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTL 196
Query: 116 YQEAIDIYKR-ILLDHKDLLALNVYGAMCYYKLDYYD 151
+ L Y Y L D
Sbjct: 197 MERLKADATDNTSLAEHLSETNF-YLGKYYLSLGDLD 232
Score = 28.8 bits (65), Expect = 3.6
Identities = 22/151 (14%), Positives = 38/151 (25%), Gaps = 23/151 (15%)
Query: 9 DAW--LGYCHFHLGQYKQALGIYET-LRHLPNPPEDTEFNIASCYFYLGM------YLQA 59
A G ++ G+ K A + PN P + L Q
Sbjct: 112 YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF-RSLWLYLAEQKLDEKQAKEVLKQH 170
Query: 60 NQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLC-----LASIHFLRC 114
+ +K + + L SL E L L +
Sbjct: 171 FEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATD-NTSLAEHLSETNFYLGKYYLSLG 229
Query: 115 HYQEAIDIYKRILLDHKDLLALNVYGAMCYY 145
A ++K +A NV+ + +
Sbjct: 230 DLDSATALFKLA-------VANNVHNFVEHR 253
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 29.2 bits (65), Expect = 3.3
Identities = 24/187 (12%), Positives = 43/187 (22%), Gaps = 34/187 (18%)
Query: 12 LGYCHFHLGQYKQALGIYETLRHLPNPPED------TEFNIASCYFYLGMYLQANQILEK 65
LG G+ ++L + + + + + + F G A + EK
Sbjct: 59 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEK 118
Query: 66 V-----------PPSRAKT-RLSFHLSHKLGDEKSLMEYHQKL---------EDSLEEQL 104
P R+ L + + L+
Sbjct: 119 AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178
Query: 105 CLASIHFLRCHYQEAIDIYKRILL------DHKDLLALNVYGAMCYYKLDYYDVSQEQVA 158
L R A R+ H D ++ N Y D +
Sbjct: 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS-NANKVRVIYWQMTGDKAAAANW 237
Query: 159 MYLAQKP 165
+ KP
Sbjct: 238 LRHTAKP 244
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 28.7 bits (64), Expect = 4.0
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 19/71 (26%)
Query: 16 HFHLGQYKQALGIYET-LRHLPNPPEDTEF--------------NIASCYFYLGMYLQA- 59
+F G+YKQAL Y+ + L + N+A C+ L + A
Sbjct: 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAI 216
Query: 60 ---NQILEKVP 67
N+ LE
Sbjct: 217 ESCNKALELDS 227
Score = 27.9 bits (62), Expect = 7.2
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 79 LSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL--LDHKD---- 132
S + E M +KLE S + +++F Y++A+ YK+I+ L+++
Sbjct: 127 KSFEKAKESWEMNSEEKLEQSTIVKER-GTVYFKEGKYKQALLQYKKIVSWLEYESSFSN 185
Query: 133 ---------LLALNVYGAMCYYKLDYYD 151
LA ++ AMC+ KL +
Sbjct: 186 EEAQKAQALRLASHLNLAMCHLKLQAFS 213
Score = 27.9 bits (62), Expect = 7.2
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 372 LSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL--LDHKD---- 425
S + E M +KLE S + +++F Y++A+ YK+I+ L+++
Sbjct: 127 KSFEKAKESWEMNSEEKLEQSTIVKER-GTVYFKEGKYKQALLQYKKIVSWLEYESSFSN 185
Query: 426 ---------LLALNVYGAMCYYKLDYYD 444
LA ++ AMC+ KL +
Sbjct: 186 EEAQKAQALRLASHLNLAMCHLKLQAFS 213
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 28.1 bits (63), Expect = 4.0
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 16 HFHLGQYKQALGIY-ETLRHLPNPPEDTEF--NIASCYFYLGMYLQA 59
F G Y AL Y + L P + N A+C+ L Y +A
Sbjct: 38 LFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKA 84
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 28.7 bits (65), Expect = 4.7
Identities = 5/36 (13%), Positives = 8/36 (22%)
Query: 87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDI 122
+ + L R + EA I
Sbjct: 243 EEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRI 278
Score = 28.7 bits (65), Expect = 4.7
Identities = 5/36 (13%), Positives = 8/36 (22%)
Query: 380 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDI 415
+ + L R + EA I
Sbjct: 243 EEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRI 278
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2,
protein structure initiative; 2.15A {Vibrio
parahaemolyticus rimd 2210633}
Length = 93
Score = 27.1 bits (60), Expect = 4.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 106 LASIHFLRCHYQEAIDIYKRIL 127
+A+ HF+ +QEAID + +L
Sbjct: 49 IANDHFISFRFQEAIDTWVLLL 70
Score = 27.1 bits (60), Expect = 4.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 399 LASIHFLRCHYQEAIDIYKRIL 420
+A+ HF+ +QEAID + +L
Sbjct: 49 IANDHFISFRFQEAIDTWVLLL 70
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 28.8 bits (64), Expect = 5.7
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 258 REMVKA-AQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDS 316
R M+ A + Q+ S+ Q + F +SF+ + +L SI ++ + D
Sbjct: 668 RAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNF-SQDPD 726
Query: 317 FNFNFAQAKCALGQYKEAEEM 337
+F + QA C GQ KE E +
Sbjct: 727 VHFKYIQAACKTGQIKEVERI 747
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 28.1 bits (63), Expect = 7.8
Identities = 25/157 (15%), Positives = 47/157 (29%), Gaps = 25/157 (15%)
Query: 9 DAW--LGYCHFHLGQYKQALGIYET-LRHLPNPPEDTEFNIASCYFYLGMYLQANQILEK 65
+AW LG + A+ + L PN + +A Y A + L+
Sbjct: 100 EAWQFLGITQAENENEQAAIVALQRCLELQPNNLK-ALMALAVSYTNTSHQQDACEALKN 158
Query: 66 V-------PPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEE-------------QLC 105
+ S L+ ++ + +++ E Q
Sbjct: 159 WIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218
Query: 106 LASIHFLRCHYQEAIDIYKR-ILLDHKDLLALNVYGA 141
L + L + AID + + + +D N GA
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGA 255
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 28.1 bits (62), Expect = 8.4
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 14/61 (22%)
Query: 21 QYKQALGIYETLRHLPNPPEDTE----------FNIASCYFYLGMYLQA----NQILEKV 66
QY+ A+ + + NIA+C L Y +A N +L +
Sbjct: 201 QYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE 260
Query: 67 P 67
Sbjct: 261 E 261
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 27.9 bits (63), Expect = 9.1
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDI 122
K++ E ++ L + I R Y EAI+I
Sbjct: 251 KTIKEEGKEELKILNYEPPEVKIPIKRLKYTEAIEI 286
Score = 27.9 bits (63), Expect = 9.1
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 380 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDI 415
K++ E ++ L + I R Y EAI+I
Sbjct: 251 KTIKEEGKEELKILNYEPPEVKIPIKRLKYTEAIEI 286
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 26.9 bits (60), Expect = 9.6
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 7/59 (11%)
Query: 15 CHFHLGQYKQALGIYET-LRHLPNPPEDTE------FNIASCYFYLGMYLQANQILEKV 66
+F G Y + + E + ED I + YF Y A K
Sbjct: 47 VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.400
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,578,024
Number of extensions: 444757
Number of successful extensions: 2145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1626
Number of HSP's successfully gapped: 304
Length of query: 507
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 409
Effective length of database: 3,965,535
Effective search space: 1621903815
Effective search space used: 1621903815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)