RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12000
(507 letters)
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 51.2 bits (121), Expect = 2e-07
Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 9/177 (5%)
Query: 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV---PP 68
LG + +A+ Y L N+A Y+ G+ A + P
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268
Query: 69 SRAKTRLSF-HLSHKLGDEKSLMEYHQKL----EDSLEEQLCLASIHFLRCHYQEAIDIY 123
+ + + G + + + LA+I + + +EA+ +Y
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328
Query: 124 KRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
++ L + A + A + + + PT A + NT K
Sbjct: 329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG-NTLK 384
Score = 45.0 bits (105), Expect = 1e-05
Identities = 36/373 (9%), Positives = 80/373 (21%), Gaps = 61/373 (16%)
Query: 12 LGYCHFHLGQYKQALGIYET-LRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV---- 66
L + + G ++ A R P+ ++S +F ++
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTG-VLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 67 --------------------------------------PPSRAKTRLSFHLSHKLGDEKS 88
G ++
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD 148
+ Q D + L ++ +EA Y + + + +
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 149 YYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPE 208
++ + P A + A L
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA-----LSLSPNHAV 238
Query: 209 SRLNLVIYHLKQEEHQEAFDLIKN---LEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQ 265
NL + +Q A D + L+P P Y A G + + A
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA- 297
Query: 266 ALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAK 325
+ +A+ + ++ + + + + N A
Sbjct: 298 --------LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349
Query: 326 CALGQYKEAEEMF 338
G+ +EA +
Sbjct: 350 QQQGKLQEALMHY 362
Score = 44.3 bits (103), Expect = 2e-05
Identities = 48/401 (11%), Positives = 104/401 (25%), Gaps = 28/401 (6%)
Query: 78 HLSHKLGD-EKSLMEYHQKLE---DSLEEQLCLASIHFLRCHYQEAIDIYKRIL-LDHKD 132
H ++ GD E + Q D+ L L+SIHF + + +
Sbjct: 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL 66
Query: 133 LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLK 192
A + G + + + + + +NL A A + +
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 193 PILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIG 252
+ + + + L + + + + P+ + V G
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ---PNFAVAWSNLGCVFNAQG 183
Query: 253 QDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYT 312
+ + + A L + + + + R F + S
Sbjct: 184 EIWLAIHHFEKAVTLDP---------NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 313 SDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHL 372
+ + N A G A + + Y +
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN----------LANALKEK 284
Query: 373 SHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVY 432
E + + LA+I + + +EA+ +Y++ L + A +
Sbjct: 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344
Query: 433 GAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 473
A + + + PT A + NT K
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG-NTLK 384
Score = 42.0 bits (97), Expect = 1e-04
Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 8/144 (5%)
Query: 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQA----NQILEKVP 67
L ++ G A+ Y L D N+A+ G +A N L P
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 68 PSRAKTRLSFHLSHKLGDEKSLMEYHQKL----EDSLEEQLCLASIHFLRCHYQEAIDIY 123
++ + G+ + + ++K + LAS+ + QEA+ Y
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362
Query: 124 KRILLDHKDLLALNVYGAMCYYKL 147
K + ++
Sbjct: 363 KEAIRISPTFADAYSNMGNTLKEM 386
Score = 32.3 bits (72), Expect = 0.15
Identities = 9/70 (12%), Positives = 23/70 (32%)
Query: 399 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP 458
LA + ++ A ++ D + + + +++ D S + + Q P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 459 TSRIALNLKA 468
A +
Sbjct: 65 LLAEAYSNLG 74
Score = 28.5 bits (62), Expect = 1.9
Identities = 31/293 (10%), Positives = 77/293 (26%), Gaps = 18/293 (6%)
Query: 211 LNLVIYHLKQEEHQEA---FDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQAL 267
+ L + + + A + EP +L + + + S A
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 268 -------FQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFN 320
+ +G+ E + L+ + D
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 321 FAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSP-----SRAKTRLSFHLSHK 375
+ L + L + K + A + L + +
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182
Query: 376 LGDEKSLMEYHQKLE---DSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVY 432
++ + + + + L+ + L ++ + A+ Y R L + ++
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242
Query: 433 GAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLK 485
A YY+ D++ + + +P A A + + AE+
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Score = 27.7 bits (60), Expect = 3.9
Identities = 16/110 (14%), Positives = 32/110 (29%)
Query: 379 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYY 438
+ + + LA +++ + AID Y+R + A
Sbjct: 223 VAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK 282
Query: 439 KLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPIL 488
+ +++ L PT +LN A + A + L
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2,
p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 34.0 bits (77), Expect = 0.020
Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 13/169 (7%)
Query: 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRA 71
G +K AL + ++ +P FNI Y L +A + +
Sbjct: 11 EGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRS----- 62
Query: 72 KTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK 131
HL+ L +K + ++++ ++ LR + ID L
Sbjct: 63 -INRDKHLAVAYFQRGMLYYQTEKYDLAIKD--LKEALIQLRGNQ--LIDYKILGLQFKL 117
Query: 132 DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
+ A Y K + + ++EQ+A+ + K R + KA
Sbjct: 118 FACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166
Score = 26.3 bits (57), Expect = 6.9
Identities = 12/134 (8%), Positives = 38/134 (28%), Gaps = 7/134 (5%)
Query: 212 NLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLV 271
N + +++ + A D ++ + + + T + + + + +
Sbjct: 10 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL 69
Query: 272 GSSQSECDTVPGRQC-------MASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQA 324
+ + + + + +I Y + +N A
Sbjct: 70 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM 129
Query: 325 KCALGQYKEAEEMF 338
++K+AEE
Sbjct: 130 YAKKEEWKKAEEQL 143
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 124
Score = 31.7 bits (72), Expect = 0.075
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 115 HYQEAIDIYKRILLDHKDLLALNVYG-AMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNL 173
+ + I I + + +Y + YKL Y +++ V + ++ L
Sbjct: 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112
Query: 174 K 174
K
Sbjct: 113 K 113
Score = 31.7 bits (72), Expect = 0.075
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 408 HYQEAIDIYKRILLDHKDLLALNVYG-AMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNL 466
+ + I I + + +Y + YKL Y +++ V + ++ L
Sbjct: 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112
Query: 467 K 467
K
Sbjct: 113 K 113
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId:
562]}
Length = 259
Score = 32.1 bits (71), Expect = 0.14
Identities = 28/250 (11%), Positives = 60/250 (24%), Gaps = 18/250 (7%)
Query: 20 GQYKQALGIYETL--RHLPNPPEDTE--FNIASCYFYLGMYLQANQILEKV---PPSRAK 72
Q + L E + E + + Y LG+ A + P +
Sbjct: 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE 72
Query: 73 TRL-----SFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL 127
+ ++ + L + + A D
Sbjct: 73 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY 132
Query: 128 LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAA 187
D + +++ + KLD + + ++ +
Sbjct: 133 QDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLME 192
Query: 188 ENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIK---NLEPSVPQEYILK 244
+ + L + E+ L Y+L + A L K E+
Sbjct: 193 RLKADATDNTSLAE---HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYA 249
Query: 245 AVVQVTIGQD 254
+ +GQD
Sbjct: 250 LLELSLLGQD 259
Score = 26.7 bits (57), Expect = 7.0
Identities = 25/228 (10%), Positives = 59/228 (25%), Gaps = 13/228 (5%)
Query: 115 HYQEAIDIYKRIL----LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA 170
+ + ++IL L + L + Y L +++ + LA +P
Sbjct: 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 73
Query: 171 LNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLI 230
N + V L P + +R + Y + + Q+
Sbjct: 74 FNYLGIYLTQAGNFD--AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF 131
Query: 231 KNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASS 290
+P+ P + + + + + + + + + +
Sbjct: 132 YQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLM 191
Query: 291 FFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMF 338
L D + F + +LG A +F
Sbjct: 192 ERLKADATDNTSLAEHLSETN-------FYLGKYYLSLGDLDSATALF 232
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 29.8 bits (66), Expect = 0.30
Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 19/121 (15%)
Query: 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRA 71
LG + + AL Y+ + L N A+ YF G Y + ++ EK
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK------ 63
Query: 72 KTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK 131
+ + + + + + + +F Y++AI Y + L +H+
Sbjct: 64 ------AIEVGRENREDYRQIAKA-------YARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
Query: 132 D 132
Sbjct: 111 T 111
Score = 27.9 bits (61), Expect = 1.3
Identities = 10/98 (10%), Positives = 31/98 (31%), Gaps = 3/98 (3%)
Query: 328 LGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQ 387
+ A + + + N + + + + E ++
Sbjct: 17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76
Query: 388 KLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD 425
++ + + + +F Y++AI Y + L +H+
Sbjct: 77 QIAKA---YARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 30.7 bits (68), Expect = 0.34
Identities = 25/182 (13%), Positives = 46/182 (25%), Gaps = 29/182 (15%)
Query: 12 LGYCHFHLGQYKQALGIYETL----RHLPNPPE--DTEFNIASCYFYLGMYLQANQILEK 65
+ + A + + N E +T C+ G + A LE
Sbjct: 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN 102
Query: 66 VPPSRAK----TRLSFHLSHKLGDEKSLMEYHQKLEDSLEE-----------------QL 104
R + ++ + + K D E +
Sbjct: 103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI 162
Query: 105 CLASIHFLRCHYQEAIDIYKRIL--LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA 162
A + L Y EA DIY +++ L ++ L + A
Sbjct: 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222
Query: 163 QK 164
Q+
Sbjct: 223 QE 224
Score = 29.2 bits (64), Expect = 1.1
Identities = 17/144 (11%), Positives = 35/144 (24%), Gaps = 5/144 (3%)
Query: 319 FNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGD 378
+ + G A + K + +
Sbjct: 81 VEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140
Query: 379 EKSLMEYHQKLEDSLEEQLC---LASIHFLRCHYQEAIDIYKRIL--LDHKDLLALNVYG 433
+ E++ + + C A + L Y EA DIY +++ L ++
Sbjct: 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200
Query: 434 AMCYYKLDYYDVSQEQVAMYLAQK 457
L + A Q+
Sbjct: 201 YFLKKGLCQLAATDAVAAARTLQE 224
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit,
P4HA1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 29.0 bits (64), Expect = 0.39
Identities = 10/55 (18%), Positives = 16/55 (29%)
Query: 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV 66
LG + Y E + E + + S YL + L+K
Sbjct: 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKA 65
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 201
Score = 29.9 bits (66), Expect = 0.49
Identities = 14/117 (11%), Positives = 34/117 (29%)
Query: 11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSR 70
+LG C + Y +A+ + L + + + N I E+
Sbjct: 77 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQE 136
Query: 71 AKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL 127
++ E+ L E + E ++ A + + + + +
Sbjct: 137 SELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELF 193
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 168
Score = 28.8 bits (63), Expect = 1.1
Identities = 16/146 (10%), Positives = 40/146 (27%), Gaps = 13/146 (8%)
Query: 13 GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAK 72
G +F G+Y QA+ Y + + + N + +
Sbjct: 22 GTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 81
Query: 73 TRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL-LDHK 131
+ D + + L ++ A ++++L ++ +
Sbjct: 82 KAVECCDKALGLDSANEKGLY-----------RRGEAQLLMNEFESAKGDFEKVLEVNPQ 130
Query: 132 DLLALNVYGAMCYYKLDYYDVSQEQV 157
+ A MC K ++ +
Sbjct: 131 NKAARLQIF-MCQKKAKEHNERDRRT 155
>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 27.6 bits (61), Expect = 1.1
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 294 LRSFKDVILYLSSIKSYYTSDDSFNF 319
RS ++I Y + + F+F
Sbjct: 56 FRSKVELIAYFEKVGDTSLDPNDFDF 81
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 29.0 bits (63), Expect = 1.5
Identities = 28/261 (10%), Positives = 66/261 (25%), Gaps = 10/261 (3%)
Query: 86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYY 145
+K + + A+ +++ + + Y
Sbjct: 5 DKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA 64
Query: 146 KLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDV 205
+ + ++ + L KP ++ AL A + R A L+ L P
Sbjct: 65 ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL--RYTPAYAH 122
Query: 206 IPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTG--------S 257
+ + L+ + +E L AV D
Sbjct: 123 LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182
Query: 258 REMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSF 317
+ +A+ + + + ++ ++ +
Sbjct: 183 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242
Query: 318 NFNFAQAKCALGQYKEAEEMF 338
+N + LG ++EA E F
Sbjct: 243 RYNLGISCINLGAHREAVEHF 263
Score = 26.3 bits (56), Expect = 9.1
Identities = 3/66 (4%), Positives = 14/66 (21%)
Query: 379 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYY 438
+K + + A+ +++ + + Y
Sbjct: 5 DKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA 64
Query: 439 KLDYYD 444
+ +
Sbjct: 65 ENEQEL 70
Score = 26.3 bits (56), Expect = 9.3
Identities = 33/272 (12%), Positives = 63/272 (23%), Gaps = 31/272 (11%)
Query: 12 LGYCHFHLGQYKQALGIYET-LRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV---- 66
G G A+ ++E ++ P E + + L A L +
Sbjct: 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHME-AWQYLGTTQAENEQELLAISALRRCLELK 83
Query: 67 ----------PPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCH- 115
S L L D + L EE A + +
Sbjct: 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143
Query: 116 --------YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS 167
+ E +++ + + +V + + + A
Sbjct: 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 203
Query: 168 RIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAF 227
L +++ E L SR NL I + H+EA
Sbjct: 204 NDYLLWNKLGATLANGNQSEEAV---AAYRRALELQPGYIRSRYNLGISCINLGAHREAV 260
Query: 228 DLIK---NLEPSVPQEYILKAVVQVTIGQDTG 256
+ N++ + I
Sbjct: 261 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 292
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 28.6 bits (63), Expect = 1.8
Identities = 13/113 (11%), Positives = 30/113 (26%)
Query: 11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSR 70
L G + + Y + P N+ + V
Sbjct: 191 QLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFI 250
Query: 71 AKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIY 123
+ + L +KLE+ +E L + + + + I+++
Sbjct: 251 KAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKAFNSQQLVHVTVINLF 303
Score = 28.2 bits (62), Expect = 2.9
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 6/141 (4%)
Query: 12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEK-----V 66
LG + Q QA Y L +A G +L +
Sbjct: 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217
Query: 67 PPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRI 126
P A T L LS K + + ++ + D ++ + +L ++ + +++
Sbjct: 218 PFPAASTNLQKALS-KALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276
Query: 127 LLDHKDLLALNVYGAMCYYKL 147
K+LL + + +
Sbjct: 277 EEQFKELLFQKAFNSQQLVHV 297
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 27.7 bits (60), Expect = 2.2
Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 7/136 (5%)
Query: 328 LGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQ 387
G+YK+A + + + K R + L+ + H S
Sbjct: 26 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC 85
Query: 388 K-----LEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL-LDHKDLLALNVYGAMCYYKLD 441
++ + H ++ A ++++L L + A A+C ++
Sbjct: 86 NKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL-AVCQQRIR 144
Query: 442 YYDVSQEQVAMYLAQK 457
++++ + ++
Sbjct: 145 RQLAREKKLYANMFER 160
>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus
influenzae [TaxId: 727]}
Length = 241
Score = 28.2 bits (62), Expect = 2.3
Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 52 YLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG-DEKSLMEYHQKLEDSLEE--QLCLAS 108
L + + IL+ A LS+ L++KL + + +E++ + + +
Sbjct: 22 MLASFFHST-ILKHQNLGGA---LSYLLANKLANPIMPAISLREIIEEAYQSNPSIIDCA 77
Query: 109 IHFLRCHY--QEAIDIYKRILLDHKDLLALNVYGAMCYY 145
++ A++++ LL K A+ Y Y
Sbjct: 78 ACDIQAVRHRDPAVELWSTPLLYLKGFHAIQSYRITHYL 116
Score = 27.0 bits (59), Expect = 4.4
Identities = 21/112 (18%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 332 KEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLG-DEKSLMEYHQKLE 390
+EA+E L +NE + + + + L + A LS+ L++KL + + +E
Sbjct: 11 QEAKE---LAENEPMLASFFHSTILKHQNLGGA---LSYLLANKLANPIMPAISLREIIE 64
Query: 391 DSLEE--QLCLASIHFLRCHY--QEAIDIYKRILLDHKDLLALNVYGAMCYY 438
++ + + + ++ A++++ LL K A+ Y Y
Sbjct: 65 EAYQSNPSIIDCAACDIQAVRHRDPAVELWSTPLLYLKGFHAIQSYRITHYL 116
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 26.7 bits (58), Expect = 4.9
Identities = 7/85 (8%), Positives = 23/85 (27%)
Query: 141 AMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILP 200
+ + + I + C + + ++ S++
Sbjct: 48 FRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIA 107
Query: 201 PLIDVIPESRLNLVIYHLKQEEHQE 225
+ D PE L + ++ ++
Sbjct: 108 LVNDPQPEHPLRADLAEEYSKDRKK 132
>d2j7qa1 d.3.1.20 (A:1-232) Tegument protein M48; N-terminal domain
{Murine cytomegalovirus (MCMV) [TaxId: 10366]}
Length = 232
Score = 26.3 bits (58), Expect = 7.7
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 274 SQSECDTVP--GRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD 315
QS P G QCM++ F L + YL I +
Sbjct: 9 DQSAPVYGPRAGSQCMSNCFTFLHT-----CYLMGIDPVLDTTS 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.400
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,849,212
Number of extensions: 85292
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 61
Length of query: 507
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 418
Effective length of database: 1,185,626
Effective search space: 495591668
Effective search space used: 495591668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.5 bits)