BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12002
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C3D|A Chain A, Crystal Structure Of 2-Phospho-(S)-Lactate Transferase
From Methanosarcina Mazei In Complex With Fo And
Phosphate. Northeast Structural Genomics Consortium
Target Mar46
pdb|3C3D|B Chain B, Crystal Structure Of 2-Phospho-(S)-Lactate Transferase
From Methanosarcina Mazei In Complex With Fo And
Phosphate. Northeast Structural Genomics Consortium
Target Mar46
pdb|3C3D|C Chain C, Crystal Structure Of 2-Phospho-(S)-Lactate Transferase
From Methanosarcina Mazei In Complex With Fo And
Phosphate. Northeast Structural Genomics Consortium
Target Mar46
pdb|3C3D|D Chain D, Crystal Structure Of 2-Phospho-(S)-Lactate Transferase
From Methanosarcina Mazei In Complex With Fo And
Phosphate. Northeast Structural Genomics Consortium
Target Mar46
pdb|3C3E|A Chain A, Crystal Structure Of 2-Phospho-(S)-Lactate Transferase
From Methanosarcina Mazei In Complex With Fo And Gdp.
Northeast Structural Genomics Consortium Target Mar46
pdb|3C3E|B Chain B, Crystal Structure Of 2-Phospho-(S)-Lactate Transferase
From Methanosarcina Mazei In Complex With Fo And Gdp.
Northeast Structural Genomics Consortium Target Mar46
pdb|3C3E|C Chain C, Crystal Structure Of 2-Phospho-(S)-Lactate Transferase
From Methanosarcina Mazei In Complex With Fo And Gdp.
Northeast Structural Genomics Consortium Target Mar46
pdb|3C3E|D Chain D, Crystal Structure Of 2-Phospho-(S)-Lactate Transferase
From Methanosarcina Mazei In Complex With Fo And Gdp.
Northeast Structural Genomics Consortium Target Mar46
pdb|3CGW|A Chain A, Crystal Structure Of 2-Phospho-(S)-Lactate Transferase
From Methanosarcina Mazei. Northeast Structural
Genomics Consortium Target Mar46
Length = 311
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 18 VVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQAWDLYLTMD-TSPESLQILQLIANES 76
++F GG G ++L L +++PE L +V+ A DL+++ + SP+ +L L +++
Sbjct: 2 IIFSGGTGTPKLLDGLKEILPEEELTVVV---NTAEDLWVSGNLISPDLDTVLYLFSDQI 58
Query: 77 YRR 79
R+
Sbjct: 59 DRK 61
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 29.6 bits (65), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 23 GEGALQVLPPL------IDVIPESRLNLVIYHLKQAWDLYLTMDTSPE 64
GEGA++++ L D + +SR N +Y ++ D Y+T+ PE
Sbjct: 34 GEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVCDKYMTVSGLPE 81
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 29.6 bits (65), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 23 GEGALQVLPPL------IDVIPESRLNLVIYHLKQAWDLYLTMDTSPE 64
GEGA++++ L D + +SR N +Y ++ D Y+T+ PE
Sbjct: 33 GEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPE 80
>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
pdb|1T3I|B Chain B, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
Length = 420
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 5 QGSDNHDLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQAWDLYL 57
SD ++ + + R G Q L L D +R +L Y+ K+ DL+L
Sbjct: 351 HASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFL 403
>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In
Complex With Cdst
pdb|2RDU|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Glyoxylate
pdb|2RDW|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Sulfate
Length = 387
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 3 LFQGSDNHDLIKHNL---VVFRGGEGALQVLPPLIDVIPE 39
+ +G D + +KH L +V G L +P IDV+PE
Sbjct: 255 ILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPE 294
>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1
Length = 392
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 3 LFQGSDNHDLIKHNL---VVFRGGEGALQVLPPLIDVIPE 39
+ +G D + +KH L +V G L +P IDV+PE
Sbjct: 260 ILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPE 299
>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|B Chain B, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|C Chain C, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|D Chain D, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate
Length = 370
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 3 LFQGSDNHDLIKHNL---VVFRGGEGALQVLPPLIDVIPE 39
+ +G D + +KH L +V G L +P IDV+PE
Sbjct: 238 ILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPE 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,548,812
Number of Sequences: 62578
Number of extensions: 161475
Number of successful extensions: 322
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 320
Number of HSP's gapped (non-prelim): 8
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)