BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12002
(164 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4III8|TTC26_XENTR Tetratricopeptide repeat protein 26 OS=Xenopus tropicalis GN=ttc26
PE=2 SV=1
Length = 554
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 99/180 (55%), Gaps = 26/180 (14%)
Query: 11 DLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMDTSPES 65
+LIKHNLVVFR GEGALQVLPPL+DVIPE+RLNLVIY+L+Q A++L ++ S
Sbjct: 258 ELIKHNLVVFRAGEGALQVLPPLVDVIPEARLNLVIYYLRQDDVQEAFNLIKDLEPSTPQ 317
Query: 66 LQILQLIANESY-----RRAKFWFAFKAFDMLERLEPLAEYWEGKR--GACAGLMQM--- 115
IL+ + N S R A + F ++ + G++ +C L++
Sbjct: 318 EYILKGVVNASLGQELGSRDHLKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLRQFDD 377
Query: 116 -----------IMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 164
N AK A+G YKEAEE+FLL+QNE +KNDY Y+S L +C
Sbjct: 378 VLIYLNSIKSYFYNDDTFNFNYAQAKAAVGNYKEAEEVFLLIQNEKIKNDYTYLSWLARC 437
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 58/72 (80%)
Query: 50 KQAWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGAC 109
+ AW+LYL M+TS ES +LQLIAN+ Y+ F++A KAFD+LERL+P EYWEGKRGAC
Sbjct: 445 RMAWELYLKMETSGESFSLLQLIANDCYKMGHFYYAAKAFDILERLDPSPEYWEGKRGAC 504
Query: 110 AGLMQMIMAGKE 121
G+ QMI+AG+E
Sbjct: 505 VGIFQMILAGRE 516
>sp|Q8BS45|TTC26_MOUSE Tetratricopeptide repeat protein 26 OS=Mus musculus GN=Ttc26 PE=2
SV=1
Length = 554
Score = 105 bits (263), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 97/180 (53%), Gaps = 26/180 (14%)
Query: 11 DLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMDTSPES 65
+LI+HNLVVFRGGEGALQVLPPL+DVIPE+RLNLVIY+L+Q A++L ++ +
Sbjct: 258 ELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQ 317
Query: 66 LQILQLIAN-----ESYRRAKFWFAFKAFDMLERLEPLAEYWEGKR--GACAGLMQM--- 115
IL+ + N E R A + F ++ + G++ +C L++
Sbjct: 318 EYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLKQFDD 377
Query: 116 -----------IMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 164
N AK A G E EE+FLL+Q+E LKNDY+Y+S L +C
Sbjct: 378 VLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEVFLLIQSEKLKNDYIYLSWLARC 437
Score = 102 bits (255), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 58/70 (82%)
Query: 52 AWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAG 111
AW+LYL M+TS ES +LQLIAN+ Y+ +F+++ KAFD+LERL+P EYWEGKRGAC G
Sbjct: 447 AWELYLKMETSGESFSLLQLIANDCYKMGQFYYSAKAFDVLERLDPNPEYWEGKRGACVG 506
Query: 112 LMQMIMAGKE 121
+ QMI+AG+E
Sbjct: 507 IFQMILAGRE 516
>sp|Q5U2N8|TTC26_RAT Tetratricopeptide repeat protein 26 OS=Rattus norvegicus GN=Ttc26
PE=2 SV=1
Length = 554
Score = 105 bits (263), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 97/180 (53%), Gaps = 26/180 (14%)
Query: 11 DLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMDTSPES 65
+LI+HNLVVFRGGEGALQVLPPL+DVIPE+RLNLVIY+L+Q A++L ++ +
Sbjct: 258 ELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQ 317
Query: 66 LQILQLIAN-----ESYRRAKFWFAFKAFDMLERLEPLAEYWEGKR--GACAGLMQM--- 115
IL+ + N E R A + F ++ + G++ +C L++
Sbjct: 318 EYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLKQFDD 377
Query: 116 -----------IMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 164
N AK A G E EE+FLL+Q+E LKNDY+Y+S L +C
Sbjct: 378 VLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEVFLLIQSEKLKNDYIYLSWLARC 437
Score = 102 bits (255), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 58/70 (82%)
Query: 52 AWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAG 111
AW+LYL M+TS ES +LQLIAN+ Y+ +F+++ KAFD+LERL+P EYWEGKRGAC G
Sbjct: 447 AWELYLKMETSGESFSLLQLIANDCYKMGQFYYSAKAFDVLERLDPNPEYWEGKRGACVG 506
Query: 112 LMQMIMAGKE 121
+ QMI+AG+E
Sbjct: 507 IFQMILAGRE 516
>sp|A0AVF1|TTC26_HUMAN Tetratricopeptide repeat protein 26 OS=Homo sapiens GN=TTC26 PE=2
SV=1
Length = 554
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 96/180 (53%), Gaps = 26/180 (14%)
Query: 11 DLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMDTSPES 65
+LI+HNLVVFRGGEGALQVLPPL+DVIPE+RLNLVIY+L+Q A++L ++ +
Sbjct: 258 ELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQ 317
Query: 66 LQILQLIAN-----ESYRRAKFWFAFKAFDMLERLEPLAEYWEGKR--GACAGLMQM--- 115
IL+ + N E R A + F ++ + G++ +C L++
Sbjct: 318 EYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLKQFDD 377
Query: 116 -----------IMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 164
N AK A G E EE FLL+Q+E +KNDY+Y+S L +C
Sbjct: 378 VLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEAFLLIQSEKMKNDYIYLSWLARC 437
Score = 102 bits (255), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 58/70 (82%)
Query: 52 AWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAG 111
AW+LYL M+TS ES +LQLIAN+ Y+ +F+++ KAFD+LERL+P EYWEGKRGAC G
Sbjct: 447 AWELYLKMETSGESFSLLQLIANDCYKMGQFYYSAKAFDVLERLDPNPEYWEGKRGACVG 506
Query: 112 LMQMIMAGKE 121
+ QMI+AG+E
Sbjct: 507 IFQMIIAGRE 516
>sp|Q5PR66|TTC26_DANRE Tetratricopeptide repeat protein 26 OS=Danio rerio GN=ttc26 PE=2
SV=1
Length = 557
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 97/180 (53%), Gaps = 26/180 (14%)
Query: 11 DLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMDTSPES 65
+LI+HNLVVFRGG GALQVLPPLIDVI E+RLNLVIY+L+Q A+ L ++ +
Sbjct: 261 ELIQHNLVVFRGGGGALQVLPPLIDVISEARLNLVIYYLRQDDIQEAYKLIKDLEPTTPQ 320
Query: 66 LQILQLIAN-----ESYRRAKFWFAFKAFDMLERLEPLAEYWEGKR--GACAGLMQM--- 115
IL+ + N E R A + F ++ + G++ +C L++
Sbjct: 321 EYILKGVVNAALGQEIGSRDHLKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLKQFED 380
Query: 116 -----------IMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 164
N AK ALG Y+EAEE+FLL+QNE +K+DYV+ S L +C
Sbjct: 381 VLIYLNSVKSYFYNDDTFSFNYAQAKAALGNYREAEELFLLIQNEKIKSDYVFQSWLARC 440
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 60/74 (81%)
Query: 50 KQAWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGAC 109
+QAW+LYL M+TS + +LQLIAN+ Y+ +F++A KAFD LERL+P EYWEGKRGAC
Sbjct: 448 RQAWELYLRMETSSDPFSLLQLIANDCYKMGQFYYAAKAFDALERLDPNPEYWEGKRGAC 507
Query: 110 AGLMQMIMAGKENR 123
G+ Q+I+AG+E+R
Sbjct: 508 VGIFQLILAGRESR 521
>sp|Q4R7Z9|TTC26_MACFA Tetratricopeptide repeat protein 26 OS=Macaca fascicularis GN=TTC26
PE=2 SV=1
Length = 554
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 96/180 (53%), Gaps = 26/180 (14%)
Query: 11 DLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMDTSPES 65
+LI+HNLVVFRGGEGALQVLPPL+DVIPE+RLNLVIY+L+Q A++L ++ +
Sbjct: 258 ELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQ 317
Query: 66 LQILQLIAN-----ESYRRAKFWFAFKAFDMLERLEPLAEYWEGKR--GACAGLMQM--- 115
IL+ + N E R A + F ++ + G++ +C L++
Sbjct: 318 EYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLKQFDD 377
Query: 116 -----------IMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 164
N AK A G E EE FLL+Q+E +KNDY+Y+S L +C
Sbjct: 378 VLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEAFLLIQSEKMKNDYIYLSWLARC 437
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 58/70 (82%)
Query: 52 AWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAG 111
AW+LYL M+TS ES +LQLIAN+ Y+ +F+++ KAFD+LERL+P EYWEGKRGAC G
Sbjct: 447 AWELYLKMETSGESFSLLQLIANDCYKMGQFYYSAKAFDVLERLDPNPEYWEGKRGACVG 506
Query: 112 LMQMIMAGKE 121
+ QMI+AG+E
Sbjct: 507 IFQMIVAGRE 516
>sp|Q8PVT6|COFD_METMA 2-phospho-L-lactate transferase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=cofD PE=1 SV=1
Length = 303
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 17 LVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQAWDLYLTMD-TSPESLQILQLIANE 75
+++F GG G ++L L +++PE L +V+ A DL+++ + SP+ +L L +++
Sbjct: 1 MIIFSGGTGTPKLLDGLKEILPEEELTVVV---NTAEDLWVSGNLISPDLDTVLYLFSDQ 57
Query: 76 SYRRAKFWFAFKAFDMLERLEPLA 99
R+ + F ER++ L
Sbjct: 58 IDRKRWWGIENDTFGTYERMKELG 81
>sp|Q3AVF6|MEND_SYNS9 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Synechococcus sp. (strain CC9902) GN=menD
PE=3 SV=1
Length = 568
Score = 33.9 bits (76), Expect = 0.52, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 53 WDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFD--MLERLEP-------LAEYWE 103
WDL L SPE LQ+L+L + RR + W A D ++ EP LA W
Sbjct: 266 WDLQLEQLISPEPLQVLRLGPLPASRRLEVWLKRNAGDQVLITEGEPRYMDPLGLATQWS 325
Query: 104 GKRGA--CA 110
G A CA
Sbjct: 326 GGLAAWCCA 334
>sp|P94872|PROA_LEPIN Gamma-glutamyl phosphate reductase OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar Lai (strain 56601)
GN=proA PE=3 SV=2
Length = 416
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 16 NLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQAWDLYLTMDTSPESLQILQLIANE 75
++VV RGGEG LI + E+ V+ H K +LY+ D PE +++ ++ N
Sbjct: 200 DIVVPRGGEG-------LIRFVSENSKIPVVKHDKGVCNLYIDQDADPE--KVIPIVINS 250
Query: 76 SYRR 79
+R
Sbjct: 251 KVQR 254
>sp|Q72NQ9|PROA_LEPIC Gamma-glutamyl phosphate reductase OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar copenhageni
(strain Fiocruz L1-130) GN=proA PE=3 SV=1
Length = 416
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 16 NLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQAWDLYLTMDTSPESLQILQLIANE 75
++VV RGGEG LI + E+ V+ H K +LY+ D PE +++ ++ N
Sbjct: 200 DIVVPRGGEG-------LIRFVSENSKIPVVKHDKGVCNLYIDQDADPE--KVIPIVINS 250
Query: 76 SYRR 79
+R
Sbjct: 251 KVQR 254
>sp|Q9LRV2|PP256_ARATH Pentatricopeptide repeat-containing protein At3g26540
OS=Arabidopsis thaliana GN=PCMP-A5 PE=2 SV=1
Length = 700
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 131 CALGQYKEAEEMFLLVQNEGLKNDYV-YISHLTKC 164
C G+ KE E+F+L++NEG+K D+V ++ L C
Sbjct: 573 CRNGRSKEVFELFMLLENEGVKPDHVTFLGILQAC 607
>sp|A7GZZ0|FTHS_CAMC5 Formate--tetrahydrofolate ligase OS=Campylobacter curvus (strain
525.92) GN=fhs PE=3 SV=1
Length = 550
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 21 RGGEGALQVLPPLIDVIPESRLNLVIYHLKQAWDLYLTMDTSPESLQILQLIANESYRRA 80
+GGEGAL++ N V+ LK+ D+ +TS ++ + IA E Y
Sbjct: 405 KGGEGALELA------------NFVLEELKKPNDMKFAYETSDDTKSKITKIATEIYGAG 452
Query: 81 KFWFAFKAFDMLERLEPLA 99
+ F A LE+++ L
Sbjct: 453 EVVFEEAAQKALEKIKKLG 471
>sp|Q46C16|COFD_METBF 2-phospho-L-lactate transferase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=cofD PE=3 SV=1
Length = 309
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 17 LVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQAWDLYLTMDTSPESLQILQLIANES 76
+++F GG G ++L L +++P + +V+ A DL+++ + L + + ++
Sbjct: 1 MIIFSGGTGTPKLLDGLKEILPAEEMTVVV---NTAEDLWVSGNLICPDLDTVIYLFSDQ 57
Query: 77 YRRAKFW-FAFKAFDMLERLEPLAEYWEGKRGAC 109
R ++W F ER++ L K G C
Sbjct: 58 IDRNRWWGVKDDTFLTYERMQKLGVMESMKLGDC 91
>sp|A6GW65|UVRC_FLAPJ UvrABC system protein C OS=Flavobacterium psychrophilum (strain
JIP02/86 / ATCC 49511) GN=uvrC PE=3 SV=1
Length = 599
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 16 NLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQAWDLY-------LTMDTSPESLQI 68
NL++ GG+G L +ID + +I K+ +L+ L +D E+L+I
Sbjct: 458 NLIIIDGGKGQLSSALKIIDELDLRGKIAIIGIAKRLEELFYPGDSIPLYLDKKSETLKI 517
Query: 69 LQLIANESYR 78
+Q + NE++R
Sbjct: 518 IQQLRNEAHR 527
>sp|Q12W53|COFD_METBU 2-phospho-L-lactate transferase OS=Methanococcoides burtonii
(strain DSM 6242) GN=cofD PE=3 SV=1
Length = 306
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 17 LVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQAW 53
+++F GG G ++L L ++PE L +V+ + W
Sbjct: 1 MIIFSGGTGTPKLLDGLRHIVPEDELTVVVNTAEDVW 37
>sp|Q06315|SKG3_YEAST Protein SKG3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SKG3 PE=1 SV=1
Length = 1026
Score = 30.0 bits (66), Expect = 7.4, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 60 DTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAG 119
D SPE + I+ L++ +++RR + D+ P A WE G G +
Sbjct: 72 DISPELVPIVTLLSAQAHRRYHYGIFLILHDLKTDGTPAARQWEECYGVLLGTQLALWDA 131
Query: 120 KE 121
KE
Sbjct: 132 KE 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,645,680
Number of Sequences: 539616
Number of extensions: 2312689
Number of successful extensions: 5552
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5526
Number of HSP's gapped (non-prelim): 33
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)