Query psy12002
Match_columns 164
No_of_seqs 102 out of 112
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 16:12:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3785|consensus 100.0 2.1E-50 4.5E-55 358.2 7.9 144 8-151 255-551 (557)
2 KOG3785|consensus 100.0 1.9E-30 4.2E-35 231.0 4.0 157 7-164 214-437 (557)
3 PRK15331 chaperone protein Sic 94.4 0.53 1.2E-05 38.3 9.7 83 62-148 33-133 (165)
4 PRK15363 pathogenicity island 93.8 0.44 9.5E-06 38.4 8.0 87 63-150 32-133 (157)
5 PRK11788 tetratricopeptide rep 90.3 6.9 0.00015 33.1 11.6 29 71-99 146-174 (389)
6 PRK11788 tetratricopeptide rep 88.7 2.5 5.3E-05 35.8 7.8 30 71-100 254-283 (389)
7 TIGR02917 PEP_TPR_lipo putativ 87.8 9.1 0.0002 34.7 11.2 93 55-148 678-798 (899)
8 PLN03077 Protein ECB2; Provisi 87.3 4.7 0.0001 38.9 9.6 134 22-161 569-731 (857)
9 TIGR02552 LcrH_SycD type III s 86.4 10 0.00022 27.2 9.4 20 128-147 93-112 (135)
10 PLN03077 Protein ECB2; Provisi 85.8 7.4 0.00016 37.6 10.0 33 129-161 563-596 (857)
11 TIGR03302 OM_YfiO outer membra 85.6 16 0.00035 28.9 11.5 22 127-148 210-231 (235)
12 PLN03081 pentatricopeptide (PP 85.1 4.2 9.2E-05 38.3 8.0 81 77-160 473-567 (697)
13 PLN03081 pentatricopeptide (PP 84.5 7.1 0.00015 36.8 9.1 22 129-150 400-421 (697)
14 PLN03218 maturation of RBCL 1; 84.3 9 0.00019 39.1 10.2 24 130-153 764-787 (1060)
15 PLN03218 maturation of RBCL 1; 83.9 12 0.00026 38.2 10.9 91 71-161 654-761 (1060)
16 KOG2076|consensus 83.4 5.6 0.00012 39.9 8.1 22 52-73 420-441 (895)
17 PF13432 TPR_16: Tetratricopep 81.9 6.3 0.00014 25.1 5.6 54 73-147 4-58 (65)
18 PF14559 TPR_19: Tetratricopep 80.2 2.1 4.6E-05 27.4 2.9 33 71-103 30-63 (68)
19 PLN03088 SGT1, suppressor of 79.3 6.9 0.00015 34.4 6.7 94 69-164 5-113 (356)
20 PRK11447 cellulose synthase su 78.7 30 0.00065 35.0 11.6 94 55-149 582-700 (1157)
21 TIGR00990 3a0801s09 mitochondr 77.5 34 0.00074 31.8 10.9 75 72-146 405-493 (615)
22 PRK12370 invasion protein regu 76.2 29 0.00064 32.1 10.1 76 73-148 379-469 (553)
23 KOG1840|consensus 75.0 36 0.00079 32.1 10.4 105 24-145 265-392 (508)
24 TIGR02917 PEP_TPR_lipo putativ 73.3 68 0.0015 29.2 11.4 14 79-92 614-627 (899)
25 TIGR02521 type_IV_pilW type IV 71.9 38 0.00082 25.1 10.1 76 18-95 40-128 (234)
26 PF12895 Apc3: Anaphase-promot 71.2 26 0.00057 23.6 6.6 68 56-145 15-83 (84)
27 TIGR02521 type_IV_pilW type IV 71.2 39 0.00085 25.0 10.7 60 37-98 30-97 (234)
28 KOG1840|consensus 70.0 26 0.00057 33.1 8.3 24 127-150 457-480 (508)
29 PRK15359 type III secretion sy 69.6 43 0.00093 25.3 8.1 75 73-148 31-120 (144)
30 TIGR00990 3a0801s09 mitochondr 69.6 89 0.0019 29.0 11.6 20 79-98 480-499 (615)
31 PF13429 TPR_15: Tetratricopep 69.4 10 0.00022 31.2 4.9 94 63-157 143-250 (280)
32 TIGR00756 PPR pentatricopeptid 65.8 9.5 0.00021 20.7 2.9 26 128-153 8-33 (35)
33 PF13432 TPR_16: Tetratricopep 64.9 21 0.00046 22.6 4.8 34 65-98 30-63 (65)
34 PF04733 Coatomer_E: Coatomer 64.3 19 0.00042 31.0 5.8 94 55-148 111-229 (290)
35 PF12895 Apc3: Anaphase-promot 63.9 14 0.00031 24.9 4.1 67 24-90 6-82 (84)
36 PF13429 TPR_15: Tetratricopep 61.4 17 0.00037 29.9 4.8 79 72-150 116-210 (280)
37 PRK15174 Vi polysaccharide exp 61.1 75 0.0016 30.3 9.6 26 74-99 152-177 (656)
38 PF14559 TPR_19: Tetratricopep 60.1 20 0.00043 22.7 4.0 28 126-153 31-58 (68)
39 PF14938 SNAP: Soluble NSF att 59.4 81 0.0018 26.4 8.6 28 126-153 161-188 (282)
40 PRK11447 cellulose synthase su 55.6 1.5E+02 0.0033 30.1 11.1 73 76-148 122-209 (1157)
41 PF01535 PPR: PPR repeat; Int 55.0 14 0.0003 19.8 2.3 24 127-150 7-30 (31)
42 PF13374 TPR_10: Tetratricopep 53.5 16 0.00036 20.7 2.6 23 125-147 7-29 (42)
43 PF09976 TPR_21: Tetratricopep 53.2 92 0.002 23.1 7.6 29 71-99 53-81 (145)
44 PF07720 TPR_3: Tetratricopept 52.7 31 0.00068 20.9 3.8 30 69-98 4-35 (36)
45 TIGR02795 tol_pal_ybgF tol-pal 51.7 73 0.0016 21.6 9.7 67 73-156 46-112 (119)
46 COG4783 Putative Zn-dependent 51.2 90 0.002 29.6 8.1 114 24-148 323-453 (484)
47 PF12569 NARP1: NMDA receptor- 51.2 72 0.0016 30.1 7.6 17 134-150 276-292 (517)
48 PRK10049 pgaA outer membrane p 50.8 2.4E+02 0.0053 27.3 11.6 18 132-149 439-456 (765)
49 PF01524 Gemini_V1: Geminiviru 49.2 34 0.00074 24.8 4.0 48 96-144 7-62 (78)
50 PF07721 TPR_4: Tetratricopept 48.4 21 0.00046 19.5 2.3 20 125-144 6-25 (26)
51 PF13428 TPR_14: Tetratricopep 47.8 27 0.00058 21.1 2.9 25 126-150 7-31 (44)
52 PF10551 MULE: MULE transposas 47.6 4.6 0.0001 27.8 -0.7 34 18-53 59-92 (93)
53 PF13812 PPR_3: Pentatricopept 44.2 35 0.00076 18.6 2.9 24 128-151 9-32 (34)
54 PRK09782 bacteriophage N4 rece 42.8 1.6E+02 0.0035 30.1 9.0 73 74-146 617-703 (987)
55 PF12854 PPR_1: PPR repeat 42.2 35 0.00075 19.9 2.7 19 129-147 16-34 (34)
56 PF13041 PPR_2: PPR repeat fam 42.0 35 0.00076 20.9 2.9 34 128-161 11-45 (50)
57 PHA02337 putative high light i 41.6 21 0.00045 22.2 1.7 20 97-117 3-22 (35)
58 PRK09782 bacteriophage N4 rece 41.3 2.2E+02 0.0048 29.1 9.7 68 78-146 588-669 (987)
59 KOG2376|consensus 41.0 3.1E+02 0.0067 27.1 10.1 93 52-146 86-201 (652)
60 PRK02603 photosystem I assembl 40.7 1.6E+02 0.0035 22.4 10.0 108 37-150 34-150 (172)
61 PF13414 TPR_11: TPR repeat; P 40.1 95 0.0021 19.6 4.9 29 70-98 7-35 (69)
62 PF08631 SPO22: Meiosis protei 39.9 2.3E+02 0.0049 23.8 8.7 57 41-97 51-115 (278)
63 PRK15174 Vi polysaccharide exp 39.7 2E+02 0.0044 27.4 8.8 127 19-147 52-204 (656)
64 PF13371 TPR_9: Tetratricopept 38.7 1E+02 0.0022 19.6 5.5 22 76-97 39-60 (73)
65 PRK10803 tol-pal system protei 38.6 2.4E+02 0.0052 24.0 8.3 21 129-149 226-246 (263)
66 cd00280 TRFH Telomeric Repeat 38.4 58 0.0013 27.4 4.4 41 108-148 87-139 (200)
67 TIGR03504 FimV_Cterm FimV C-te 38.0 71 0.0015 20.3 3.8 37 54-94 7-43 (44)
68 PF09295 ChAPs: ChAPs (Chs5p-A 37.8 1.7E+02 0.0037 26.7 7.7 75 22-104 184-273 (395)
69 PF07719 TPR_2: Tetratricopept 36.0 75 0.0016 17.2 4.1 29 70-98 5-33 (34)
70 PRK12370 invasion protein regu 34.2 3.7E+02 0.008 24.9 9.4 74 73-147 345-433 (553)
71 PF13176 TPR_7: Tetratricopept 34.0 48 0.001 19.2 2.4 21 125-145 4-24 (36)
72 PF04053 Coatomer_WDAD: Coatom 33.5 55 0.0012 30.2 3.9 65 32-96 288-377 (443)
73 PF09082 DUF1922: Domain of un 32.2 24 0.00051 25.0 1.0 24 129-152 36-59 (68)
74 KOG3081|consensus 31.5 3.8E+02 0.0083 24.0 9.9 97 52-149 114-236 (299)
75 KOG1126|consensus 31.4 92 0.002 30.5 5.1 114 22-143 334-471 (638)
76 PF13174 TPR_6: Tetratricopept 30.5 57 0.0012 17.5 2.3 23 126-148 6-28 (33)
77 PRK15179 Vi polysaccharide bio 30.5 5.3E+02 0.012 25.3 10.6 93 53-146 93-214 (694)
78 PF00515 TPR_1: Tetratricopept 30.3 1E+02 0.0022 16.9 4.1 28 71-98 6-33 (34)
79 PF14853 Fis1_TPR_C: Fis1 C-te 29.5 85 0.0018 20.6 3.3 29 71-99 6-34 (53)
80 PLN03088 SGT1, suppressor of 28.7 1.7E+02 0.0037 25.6 6.0 79 18-99 11-103 (356)
81 KOG1129|consensus 28.5 30 0.00065 32.1 1.2 78 21-103 270-362 (478)
82 KOG2003|consensus 28.5 4.1E+02 0.0088 26.0 8.7 19 52-70 564-582 (840)
83 COG2956 Predicted N-acetylgluc 27.4 1.8E+02 0.0038 26.9 5.9 61 87-150 53-137 (389)
84 COG4785 NlpI Lipoprotein NlpI, 25.2 2.1E+02 0.0045 25.3 5.7 33 52-84 243-276 (297)
85 PRK11189 lipoprotein NlpI; Pro 24.4 4.3E+02 0.0093 22.2 9.6 73 71-145 103-190 (296)
86 KOG4162|consensus 24.1 7.7E+02 0.017 25.0 10.5 89 52-145 656-779 (799)
87 KOG1497|consensus 23.1 3.5E+02 0.0076 25.0 6.9 62 52-114 150-233 (399)
88 PF07822 Toxin_13: Neurotoxin 22.8 48 0.001 22.1 1.1 13 100-112 28-40 (55)
89 PF09976 TPR_21: Tetratricopep 21.8 2.8E+02 0.006 20.5 5.3 55 18-75 57-114 (145)
No 1
>KOG3785|consensus
Probab=100.00 E-value=2.1e-50 Score=358.18 Aligned_cols=144 Identities=48% Similarity=0.746 Sum_probs=136.9
Q ss_pred cchhhhhhhhhhccCcchhhhhcccccccchhhhHHHHHHHHHH------------------------------------
Q psy12002 8 DNHDLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ------------------------------------ 51 (164)
Q Consensus 8 ~~~dli~hNl~vFr~G~~Al~vLp~L~~~~pear~NLvi~~l~~------------------------------------ 51 (164)
|..+|+|||||||||||+|+||||||+++|||||+||+|||+++
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcC
Confidence 88999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy12002 52 -------------------------------------------------------------------------------- 51 (164)
Q Consensus 52 -------------------------------------------------------------------------------- 51 (164)
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEe 414 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEE 414 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHH
Confidence
Q ss_pred --------------------------------HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy12002 52 --------------------------------AWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLA 99 (164)
Q Consensus 52 --------------------------------Aw~lyl~~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~p 99 (164)
||++||++++++|+|+|||+|||+||++++||||+||||++|++||.|
T Consensus 415 lf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 415 LFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHhhHHHHHHHHHhccc---cccchhHHHHHh--cCHHHHHHHHHHhhcccc
Q psy12002 100 EYWEGKRGACAGLMQMIMAGKE---NRLNVPWAKCAL--GQYKEAEEMFLLVQNEGL 151 (164)
Q Consensus 100 e~~~Gkrga~ag~F~~~~~~~e---~~Dnf~qa~a~~--g~~kEAEe~~l~Iq~~~~ 151 (164)
|+|+||||||||+||++.++++ |....+++..-+ ....++|-++.+|.+|.-
T Consensus 495 EnWeGKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~nsq~E~mikvvrkwa~ 551 (557)
T KOG3785|consen 495 ENWEGKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPNSQCEFMIKVVRKWAE 551 (557)
T ss_pred cccCCccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 9999999999999999999997 677788866655 667899999999999964
No 2
>KOG3785|consensus
Probab=99.96 E-value=1.9e-30 Score=231.02 Aligned_cols=157 Identities=25% Similarity=0.334 Sum_probs=137.5
Q ss_pred ccchhhhhhhh---hhcc--Ccchhhhhcccccccch--------hhhHHHHHHHHHH-------------------HHH
Q psy12002 7 SDNHDLIKHNL---VVFR--GGEGALQVLPPLIDVIP--------ESRLNLVIYHLKQ-------------------AWD 54 (164)
Q Consensus 7 ~~~~dli~hNl---~vFr--~G~~Al~vLp~L~~~~p--------ear~NLvi~~l~~-------------------Aw~ 54 (164)
.++++.|+.|| ++|| ||+.|+++++.|.|-+. ..|||||+|+.++ +.+
T Consensus 214 q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~i 293 (557)
T KOG3785|consen 214 QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLII 293 (557)
T ss_pred hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhee
Confidence 38899999999 8899 99999999999999543 4599999999998 888
Q ss_pred HHHhcCCchhHHHHHH-------------HHHHHHHH-----HHHHHHHHHHHHHHHhcCCCccchhhhHhhHHHHHHHH
Q psy12002 55 LYLTMDTSPESLQILQ-------------LIANESYR-----RAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMI 116 (164)
Q Consensus 55 lyl~~e~~~eaf~LLq-------------~IandcY~-----~~~f~yA~kaFd~le~lD~~pe~~~Gkrga~ag~F~~~ 116 (164)
+||+.++..||++|+| +++++--| ..|..-|++-|+++|.+-..+|++|||| |||++||+.
T Consensus 294 YyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ-smAs~fFL~ 372 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ-SMASYFFLS 372 (557)
T ss_pred eecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH-HHHHHHHHH
Confidence 9999999999999887 56666555 7899999999999999999999999966 999999953
Q ss_pred Hhcc-------------ccccch----hHHHHHhcCHHHHHHHHHHhhcccccCchhhhhhcccC
Q psy12002 117 MAGK-------------ENRLNV----PWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 164 (164)
Q Consensus 117 ~~~~-------------e~~Dnf----~qa~a~~g~~kEAEe~~l~Iq~~~~kn~~~y~swl~rc 164 (164)
..=+ -++|.| +||++|+|+|+||||.|.+|+++++||+++|+||||||
T Consensus 373 ~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArC 437 (557)
T KOG3785|consen 373 FQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARC 437 (557)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHH
Confidence 2211 244444 68999999999999999999999999999999999999
No 3
>PRK15331 chaperone protein SicA; Provisional
Probab=94.39 E-value=0.53 Score=38.28 Aligned_cols=83 Identities=18% Similarity=0.121 Sum_probs=60.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccchhhhHhhHHHHHHHH--------------Hhcc-c--cc
Q psy12002 62 SPESLQILQLIANESYRRAKFWFAFKAFDMLERLEP-LAEYWEGKRGACAGLMQMI--------------MAGK-E--NR 123 (164)
Q Consensus 62 ~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~-~pe~~~Gkrga~ag~F~~~--------------~~~~-e--~~ 123 (164)
+++...-+=..|-.=|..|.+-.|.+.|..|-.+|+ +++||-|.- +|.|+. +... . |.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLa----a~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLA----AVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 334444455666777889999999999999999998 479999853 333321 1111 2 44
Q ss_pred cchhHHHHHhcCHHHHHHHHHHhhc
Q psy12002 124 LNVPWAKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 124 Dnf~qa~a~~g~~kEAEe~~l~Iq~ 148 (164)
+.-++++-++|+-.+|.+.|..+.+
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHh
Confidence 5557899999999999999988765
No 4
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.77 E-value=0.44 Score=38.41 Aligned_cols=87 Identities=15% Similarity=0.065 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhhHhhHH----------HHHH-HHHhcc---ccccchh
Q psy12002 63 PESLQILQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGKRGACA----------GLMQ-MIMAGK---ENRLNVP 127 (164)
Q Consensus 63 ~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gkrga~a----------g~F~-~~~~~~---e~~Dnf~ 127 (164)
+|..+.|=.++..-|..|.+-.|.+.|..+-.+||. ++||=|.= +|. -+|. .+.... ++..+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG-~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLG-ECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH-HHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 566777777888888999999999999999999996 69999842 221 1111 111111 2455557
Q ss_pred HHHHHhcCHHHHHHHHHHhhccc
Q psy12002 128 WAKCALGQYKEAEEMFLLVQNEG 150 (164)
Q Consensus 128 qa~a~~g~~kEAEe~~l~Iq~~~ 150 (164)
+++-++|+.++|++.|..+-++.
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 79999999999999999776664
No 5
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=90.25 E-value=6.9 Score=33.10 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPLA 99 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~p 99 (164)
.++.-+...|++--|.+.|+.+-+.+|.+
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (389)
T PRK11788 146 QLLEIYQQEKDWQKAIDVAERLEKLGGDS 174 (389)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHhcCCc
Confidence 33444556777777777777766655543
No 6
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=88.67 E-value=2.5 Score=35.82 Aligned_cols=30 Identities=7% Similarity=-0.200 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPLAE 100 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~pe 100 (164)
.+++..+..|.+-.|.+.++.+-+.+|+++
T Consensus 254 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 254 KLMECYQALGDEAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 344555567777777777777666666654
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=87.82 E-value=9.1 Score=34.72 Aligned_cols=93 Identities=13% Similarity=0.112 Sum_probs=51.6
Q ss_pred HHHhcCCchhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhcCCCccchhh---------hHhhHHH
Q psy12002 55 LYLTMDTSPESLQILQLI--------------ANESYRRAKFWFAFKAFDMLERLEPLAEYWEG---------KRGACAG 111 (164)
Q Consensus 55 lyl~~e~~~eaf~LLq~I--------------andcY~~~~f~yA~kaFd~le~lD~~pe~~~G---------krga~ag 111 (164)
++.+.+..++|..+++.+ +..++..|.+-.|.+.|...-..+|+++.+.+ +......
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHH
Confidence 344455555555555533 33355678888888888877677776654432 1112223
Q ss_pred HHHHHHhccccccch-----hHHHHHhcCHHHHHHHHHHhhc
Q psy12002 112 LMQMIMAGKENRLNV-----PWAKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 112 ~F~~~~~~~e~~Dnf-----~qa~a~~g~~kEAEe~~l~Iq~ 148 (164)
.+..++... |.+.. +.++...|++.+|++.|..+-.
T Consensus 758 ~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 758 TLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 333323222 22221 3356667999999888877643
No 8
>PLN03077 Protein ECB2; Provisional
Probab=87.27 E-value=4.7 Score=38.91 Aligned_cols=134 Identities=15% Similarity=0.206 Sum_probs=76.6
Q ss_pred Ccchhhhhcccccc--cc-hhhhHHHHHHHHHH------HHHHHHhcC------CchhHHHHHHHHHHHHHHHHHHHHHH
Q psy12002 22 GGEGALQVLPPLID--VI-PESRLNLVIYHLKQ------AWDLYLTMD------TSPESLQILQLIANESYRRAKFWFAF 86 (164)
Q Consensus 22 ~G~~Al~vLp~L~~--~~-pear~NLvi~~l~~------Aw~lyl~~e------~~~eaf~LLq~IandcY~~~~f~yA~ 86 (164)
.++.|++++..+++ +. ++.-.|.+|--..+ |+.++-+|. +..+.++ .++..+-+.|.+-.|.
T Consensus 569 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~---~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA---CVVDLLGRAGKLTEAY 645 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH---HHHHHHHhCCCHHHHH
Confidence 55777777776654 23 23344444432222 555554443 1112222 2333445578887777
Q ss_pred HHHHHHHhcCCCccchhhhHhhHHH---------HHHHHHhccccccc--h---hHHHHHhcCHHHHHHHHHHhhccccc
Q psy12002 87 KAFDMLERLEPLAEYWEGKRGACAG---------LMQMIMAGKENRLN--V---PWAKCALGQYKEAEEMFLLVQNEGLK 152 (164)
Q Consensus 87 kaFd~le~lD~~pe~~~Gkrga~ag---------~F~~~~~~~e~~Dn--f---~qa~a~~g~~kEAEe~~l~Iq~~~~k 152 (164)
+-++.+. +.|++..|.-.-++|.- +...++. -+|.+. + ..+++..|+|.||+++...|...+++
T Consensus 646 ~~~~~m~-~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~-l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~ 723 (857)
T PLN03077 646 NFINKMP-ITPDPAVWGALLNACRIHRHVELGELAAQHIFE-LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLT 723 (857)
T ss_pred HHHHHCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Confidence 6666553 67778888766555421 1111111 123222 1 34788899999999999999999988
Q ss_pred Cchhhhhhc
Q psy12002 153 NDYVYISHL 161 (164)
Q Consensus 153 n~~~y~swl 161 (164)
.++-+ ||.
T Consensus 724 k~~g~-s~i 731 (857)
T PLN03077 724 VDPGC-SWV 731 (857)
T ss_pred CCCCc-cEE
Confidence 88654 553
No 9
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=86.39 E-value=10 Score=27.22 Aligned_cols=20 Identities=25% Similarity=0.101 Sum_probs=11.6
Q ss_pred HHHHHhcCHHHHHHHHHHhh
Q psy12002 128 WAKCALGQYKEAEEMFLLVQ 147 (164)
Q Consensus 128 qa~a~~g~~kEAEe~~l~Iq 147 (164)
.++...|++++|...+..+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 35555577777766655443
No 10
>PLN03077 Protein ECB2; Provisional
Probab=85.76 E-value=7.4 Score=37.58 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=17.2
Q ss_pred HHHHhcCHHHHHHHHHHhhccccc-Cchhhhhhc
Q psy12002 129 AKCALGQYKEAEEMFLLVQNEGLK-NDYVYISHL 161 (164)
Q Consensus 129 a~a~~g~~kEAEe~~l~Iq~~~~k-n~~~y~swl 161 (164)
+++..|..++|.++|..|.+.+.+ +..+|.+-|
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence 444456666666666655555444 444444433
No 11
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=85.63 E-value=16 Score=28.89 Aligned_cols=22 Identities=18% Similarity=0.030 Sum_probs=16.5
Q ss_pred hHHHHHhcCHHHHHHHHHHhhc
Q psy12002 127 PWAKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 127 ~qa~a~~g~~kEAEe~~l~Iq~ 148 (164)
.++...+|++.+|..++..+..
T Consensus 210 ~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 210 VEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4477777888888888777654
No 12
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=85.13 E-value=4.2 Score=38.29 Aligned_cols=81 Identities=16% Similarity=0.152 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccchhhhHhhHH---------HHHHHHHhccccc--cch---hHHHHHhcCHHHHHHH
Q psy12002 77 YRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACA---------GLMQMIMAGKENR--LNV---PWAKCALGQYKEAEEM 142 (164)
Q Consensus 77 Y~~~~f~yA~kaFd~le~lD~~pe~~~Gkrga~a---------g~F~~~~~~~e~~--Dnf---~qa~a~~g~~kEAEe~ 142 (164)
-+.|++-.|.+-|+-. ...|+..+|.-.-++|. -++.. +.+-+|. .++ ..+++..|++.||+++
T Consensus 473 ~r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~-l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 473 GREGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKNLELGRLAAEK-LYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred HhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH-HhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 3477777776655433 24555566764433331 11221 1122332 233 2378888999999999
Q ss_pred HHHhhcccccCchhhhhh
Q psy12002 143 FLLVQNEGLKNDYVYISH 160 (164)
Q Consensus 143 ~l~Iq~~~~kn~~~y~sw 160 (164)
+..|++.+++.+.-+ ||
T Consensus 551 ~~~m~~~g~~k~~g~-s~ 567 (697)
T PLN03081 551 VETLKRKGLSMHPAC-TW 567 (697)
T ss_pred HHHHHHcCCccCCCe-eE
Confidence 999999988765543 45
No 13
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=84.49 E-value=7.1 Score=36.79 Aligned_cols=22 Identities=32% Similarity=0.299 Sum_probs=10.1
Q ss_pred HHHHhcCHHHHHHHHHHhhccc
Q psy12002 129 AKCALGQYKEAEEMFLLVQNEG 150 (164)
Q Consensus 129 a~a~~g~~kEAEe~~l~Iq~~~ 150 (164)
+++..|+.++|.++|..|.+.+
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g 421 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEG 421 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 3444444555544444444433
No 14
>PLN03218 maturation of RBCL 1; Provisional
Probab=84.32 E-value=9 Score=39.06 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=11.1
Q ss_pred HHHhcCHHHHHHHHHHhhcccccC
Q psy12002 130 KCALGQYKEAEEMFLLVQNEGLKN 153 (164)
Q Consensus 130 ~a~~g~~kEAEe~~l~Iq~~~~kn 153 (164)
++..|+..+|++++..+....++.
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~p 787 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKP 787 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCC
Confidence 333355555555555544444433
No 15
>PLN03218 maturation of RBCL 1; Provisional
Probab=83.88 E-value=12 Score=38.16 Aligned_cols=91 Identities=16% Similarity=0.073 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--CCccchh---------hhHhhHHHHHHHHHhccccccchhH-----HHHHhc
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLE--PLAEYWE---------GKRGACAGLMQMIMAGKENRLNVPW-----AKCALG 134 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD--~~pe~~~---------Gkrga~ag~F~~~~~~~e~~Dnf~q-----a~a~~g 134 (164)
.+.+.|.+.|.+-.|.+.|+.+.+.. |+..+|. |+-.-+..+|..+....-.++...| +++..|
T Consensus 654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 55567888999999999998877654 4444444 3223344456554433223343333 777779
Q ss_pred CHHHHHHHHHHhhccccc-Cchhhhhhc
Q psy12002 135 QYKEAEEMFLLVQNEGLK-NDYVYISHL 161 (164)
Q Consensus 135 ~~kEAEe~~l~Iq~~~~k-n~~~y~swl 161 (164)
+++||.++|..|...+.+ +..+|.+-+
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999998877654 556665543
No 16
>KOG2076|consensus
Probab=83.37 E-value=5.6 Score=39.93 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=12.9
Q ss_pred HHHHHHhcCCchhHHHHHHHHH
Q psy12002 52 AWDLYLTMDTSPESLQILQLIA 73 (164)
Q Consensus 52 Aw~lyl~~e~~~eaf~LLq~Ia 73 (164)
+.+.|++.+...+|..++-.|.
T Consensus 420 ~a~al~~~~~~~~Al~~l~~i~ 441 (895)
T KOG2076|consen 420 LADALTNIGKYKEALRLLSPIT 441 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHh
Confidence 4445555666666666666444
No 17
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=81.94 E-value=6.3 Score=25.14 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhhHhhHHHHHHHHHhccccccchhHHHHHhcCHHHHHHHHHHhh
Q psy12002 73 ANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLLVQ 147 (164)
Q Consensus 73 andcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~a~~g~~kEAEe~~l~Iq 147 (164)
+..-|..|++--|.+.|+.+-+.+|+ ++.|-+ +++++...|++++|.+.|..+-
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~---------------------lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYL---------------------LGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHH---------------------HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHH---------------------HHHHHHHcCCHHHHHHHHHHHH
Confidence 44557788888888888888777754 222222 3456677899999988887663
No 18
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=80.15 E-value=2.1 Score=27.42 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchh
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPL-AEYWE 103 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~ 103 (164)
.++..+++.|++--|.+.++.+-..+|+ |++|.
T Consensus 30 ~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 30 LLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 5667778899999998888888888887 55554
No 19
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=79.33 E-value=6.9 Score=34.38 Aligned_cols=94 Identities=18% Similarity=0.201 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhhHhh----------HHHHHHHHHhccc-c---ccchhHHHHHh
Q psy12002 69 LQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGKRGA----------CAGLMQMIMAGKE-N---RLNVPWAKCAL 133 (164)
Q Consensus 69 Lq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gkrga----------~ag~F~~~~~~~e-~---~Dnf~qa~a~~ 133 (164)
|..-|++.|..|+|.-|...|+-.-++||+ ++.|-. ||. +...+..++.-.. + -..++.++..+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~-~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYAD-RAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 344466777777777777777766566654 344432 211 1122222111111 0 11123477778
Q ss_pred cCHHHHHHHHHHhhcccccCchhhhhhcccC
Q psy12002 134 GQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 164 (164)
Q Consensus 134 g~~kEAEe~~l~Iq~~~~kn~~~y~swl~rc 164 (164)
|+|.+|.+.|.....-. -++.....|+.+|
T Consensus 84 g~~~eA~~~~~~al~l~-P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLA-PGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 99999998887765433 2334555666655
No 20
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=78.70 E-value=30 Score=35.02 Aligned_cols=94 Identities=22% Similarity=0.197 Sum_probs=53.5
Q ss_pred HHHhcCCchhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchh---------hhHhhHHHHHH
Q psy12002 55 LYLTMDTSPESLQILQ----------LIANESYRRAKFWFAFKAFDMLERLEPL-AEYWE---------GKRGACAGLMQ 114 (164)
Q Consensus 55 lyl~~e~~~eaf~LLq----------~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~---------Gkrga~ag~F~ 114 (164)
.+...+..++|..+++ ..+.--...|++-.|.+.|+.+-..+|+ ++-+- |+...+..++.
T Consensus 582 ~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3445555555665555 2333345578888888888887777764 33333 22222333344
Q ss_pred HHHhcccccc-c----hhHHHHHhcCHHHHHHHHHHhhcc
Q psy12002 115 MIMAGKENRL-N----VPWAKCALGQYKEAEEMFLLVQNE 149 (164)
Q Consensus 115 ~~~~~~e~~D-n----f~qa~a~~g~~kEAEe~~l~Iq~~ 149 (164)
.++.. .|++ + .+.++...|++++|.+.+..+...
T Consensus 662 ~ll~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 662 KLPAT-ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHhcc-CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 33222 2221 1 234666779999999998887654
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=77.54 E-value=34 Score=31.77 Aligned_cols=75 Identities=15% Similarity=0.042 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccchh----------hhHhhHHHHHHHHHhcccc-c---cchhHHHHHhcCHH
Q psy12002 72 IANESYRRAKFWFAFKAFDMLERLEPLAEYWE----------GKRGACAGLMQMIMAGKEN-R---LNVPWAKCALGQYK 137 (164)
Q Consensus 72 IandcY~~~~f~yA~kaFd~le~lD~~pe~~~----------Gkrga~ag~F~~~~~~~e~-~---Dnf~qa~a~~g~~k 137 (164)
.+.-++..|++--|.+.|+-.-.++|+....- |+-..+...|...+....+ . ..+..++...|++.
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHH
Confidence 34446668888888888888766766532221 3333444455544432211 1 12345777789999
Q ss_pred HHHHHHHHh
Q psy12002 138 EAEEMFLLV 146 (164)
Q Consensus 138 EAEe~~l~I 146 (164)
+|.+.|...
T Consensus 485 ~A~~~~~~A 493 (615)
T TIGR00990 485 EAIEKFDTA 493 (615)
T ss_pred HHHHHHHHH
Confidence 998887763
No 22
>PRK12370 invasion protein regulator; Provisional
Probab=76.22 E-value=29 Score=32.07 Aligned_cols=76 Identities=8% Similarity=-0.043 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccchh----------hhHhhHHHHHHHHHhcccccc-----chhHHHHHhcCHH
Q psy12002 73 ANESYRRAKFWFAFKAFDMLERLEPLAEYWE----------GKRGACAGLMQMIMAGKENRL-----NVPWAKCALGQYK 137 (164)
Q Consensus 73 andcY~~~~f~yA~kaFd~le~lD~~pe~~~----------Gkrga~ag~F~~~~~~~e~~D-----nf~qa~a~~g~~k 137 (164)
+..+...|++-.|...|+-.-++||.+..+. |+-.....++...+....|.+ .++.++..+|+++
T Consensus 379 g~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 379 GWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHE 458 (553)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHH
Confidence 4556678898889999999888888753221 222233344444332221211 1234667779999
Q ss_pred HHHHHHHHhhc
Q psy12002 138 EAEEMFLLVQN 148 (164)
Q Consensus 138 EAEe~~l~Iq~ 148 (164)
||++.+..+..
T Consensus 459 eA~~~~~~~~~ 469 (553)
T PRK12370 459 LARKLTKEIST 469 (553)
T ss_pred HHHHHHHHhhh
Confidence 99998877643
No 23
>KOG1840|consensus
Probab=74.99 E-value=36 Score=32.14 Aligned_cols=105 Identities=23% Similarity=0.214 Sum_probs=58.5
Q ss_pred chhhhhccccccc----chhhhHHHHHHHHHH------------HHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHH
Q psy12002 24 EGALQVLPPLIDV----IPESRLNLVIYHLKQ------------AWDLYLTMDTS--PESLQILQLIANESYRRAKFWFA 85 (164)
Q Consensus 24 ~~Al~vLp~L~~~----~pear~NLvi~~l~~------------Aw~lyl~~e~~--~eaf~LLq~IandcY~~~~f~yA 85 (164)
+.|++|+-..-+- +-..=.||.+.|.++ |-++|.+.... .+.-..|.-++.-|=-++.+-.|
T Consensus 265 ~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea 344 (508)
T KOG1840|consen 265 EEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEA 344 (508)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHH
Confidence 5677777766652 223356777777666 77777773322 24555555555555555554443
Q ss_pred ----HHHHHHHHhcCCCcc-chhhhHhhHHHHHHHHHhccccccchhHHHHHhcCHHHHHHHHHH
Q psy12002 86 ----FKAFDMLERLEPLAE-YWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLL 145 (164)
Q Consensus 86 ----~kaFd~le~lD~~pe-~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~a~~g~~kEAEe~~l~ 145 (164)
++++.++.+.-...+ ..+|-+ -++++.+-+.|+|+|||+++.-
T Consensus 345 ~~l~q~al~i~~~~~g~~~~~~a~~~-----------------~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 345 KKLLQKALKIYLDAPGEDNVNLAKIY-----------------ANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHH-----------------HHHHHHHHHhcchhHHHHHHHH
Confidence 355555542111112 233433 3455566678899999888653
No 24
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=73.33 E-value=68 Score=29.16 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q psy12002 79 RAKFWFAFKAFDML 92 (164)
Q Consensus 79 ~~~f~yA~kaFd~l 92 (164)
.|++-.|.+.|.-+
T Consensus 614 ~~~~~~A~~~~~~~ 627 (899)
T TIGR02917 614 AGDLNKAVSSFKKL 627 (899)
T ss_pred cCCHHHHHHHHHHH
Confidence 44454555555443
No 25
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=71.92 E-value=38 Score=25.08 Aligned_cols=76 Identities=20% Similarity=0.179 Sum_probs=37.5
Q ss_pred hhccCc--chhhhhcccccccc---hhhhHHHHHHHHHH-----HHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHH
Q psy12002 18 VVFRGG--EGALQVLPPLIDVI---PESRLNLVIYHLKQ-----AWDLY---LTMDTSPESLQILQLIANESYRRAKFWF 84 (164)
Q Consensus 18 ~vFr~G--~~Al~vLp~L~~~~---pear~NLvi~~l~~-----Aw~ly---l~~e~~~eaf~LLq~IandcY~~~~f~y 84 (164)
+.++.| +.|.+.+-..++.. +.+..++...+... |-++| ++..+... .....++...+.+|++-.
T Consensus 40 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~g~~~~ 117 (234)
T TIGR02521 40 GYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG--DVLNNYGTFLCQQGKYEQ 117 (234)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcccHHH
Confidence 444444 55665555544433 44556666655544 33333 23322221 223334445566777777
Q ss_pred HHHHHHHHHhc
Q psy12002 85 AFKAFDMLERL 95 (164)
Q Consensus 85 A~kaFd~le~l 95 (164)
|.+.|+..-+.
T Consensus 118 A~~~~~~~~~~ 128 (234)
T TIGR02521 118 AMQQFEQAIED 128 (234)
T ss_pred HHHHHHHHHhc
Confidence 77766665443
No 26
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=71.24 E-value=26 Score=23.55 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=37.4
Q ss_pred HHhcCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhHhhHHHHHHHHHhccccccchhHHHHHhc
Q psy12002 56 YLTMDTSP-ESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALG 134 (164)
Q Consensus 56 yl~~e~~~-eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~pe~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~a~~g 134 (164)
+++.++++ ++-.++. +|...|.+|++--|...++- ...+ +.. +.+.. -+++++-.+|
T Consensus 15 ~~~~~~~~~~~~~~~~-la~~~~~~~~y~~A~~~~~~-~~~~--~~~--------~~~~~----------l~a~~~~~l~ 72 (84)
T PF12895_consen 15 LLELDPTNPNSAYLYN-LAQCYFQQGKYEEAIELLQK-LKLD--PSN--------PDIHY----------LLARCLLKLG 72 (84)
T ss_dssp HHHHHCGTHHHHHHHH-HHHHHHHTTHHHHHHHHHHC-HTHH--HCH--------HHHHH----------HHHHHHHHTT
T ss_pred HHHHCCCChhHHHHHH-HHHHHHHCCCHHHHHHHHHH-hCCC--CCC--------HHHHH----------HHHHHHHHhC
Confidence 33444432 3333333 78888888888776665555 2222 211 11111 1356777889
Q ss_pred CHHHHHHHHHH
Q psy12002 135 QYKEAEEMFLL 145 (164)
Q Consensus 135 ~~kEAEe~~l~ 145 (164)
+|+||.++|..
T Consensus 73 ~y~eAi~~l~~ 83 (84)
T PF12895_consen 73 KYEEAIKALEK 83 (84)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 99999888753
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=71.21 E-value=39 Score=24.98 Aligned_cols=60 Identities=18% Similarity=0.072 Sum_probs=34.1
Q ss_pred chhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 37 IPESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 37 ~pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
.+.+..|+...+..+ |.+.+.+ .++ +.......++..++..|++-.|.+.|...-+.+|.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDP--DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN 97 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 455666766655544 4444332 222 12233344566677788888888888776565554
No 28
>KOG1840|consensus
Probab=69.95 E-value=26 Score=33.07 Aligned_cols=24 Identities=33% Similarity=0.231 Sum_probs=19.7
Q ss_pred hHHHHHhcCHHHHHHHHHHhhccc
Q psy12002 127 PWAKCALGQYKEAEEMFLLVQNEG 150 (164)
Q Consensus 127 ~qa~a~~g~~kEAEe~~l~Iq~~~ 150 (164)
.-++...|+|++|+++...+-++.
T Consensus 457 ~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 457 AALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHH
Confidence 448888899999999988887663
No 29
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=69.63 E-value=43 Score=25.30 Aligned_cols=75 Identities=12% Similarity=0.035 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhh---------HhhHHHHHHHHHhcccccc-----chhHHHHHhcCHH
Q psy12002 73 ANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGK---------RGACAGLMQMIMAGKENRL-----NVPWAKCALGQYK 137 (164)
Q Consensus 73 andcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gk---------rga~ag~F~~~~~~~e~~D-----nf~qa~a~~g~~k 137 (164)
+...+..|++--|...|+-+=.+||. +++|.++ -.-+..+|...+.-. |.+ +.+.++..+|++.
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHH
Confidence 44556778888888888877677664 4666532 222333444433322 211 2234677779999
Q ss_pred HHHHHHHHhhc
Q psy12002 138 EAEEMFLLVQN 148 (164)
Q Consensus 138 EAEe~~l~Iq~ 148 (164)
||.+.|...-.
T Consensus 110 eAi~~~~~Al~ 120 (144)
T PRK15359 110 LAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHH
Confidence 99888877543
No 30
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=69.57 E-value=89 Score=29.04 Aligned_cols=20 Identities=35% Similarity=0.307 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q psy12002 79 RAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 79 ~~~f~yA~kaFd~le~lD~~ 98 (164)
.|++-.|.+.|+..-.++|.
T Consensus 480 ~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 480 QNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred ccCHHHHHHHHHHHHhcCCc
Confidence 56666666666665555543
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=69.42 E-value=10 Score=31.18 Aligned_cols=94 Identities=16% Similarity=0.164 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchh---------hhHhhHHHHHHHHHhcccc----ccchhH
Q psy12002 63 PESLQILQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWE---------GKRGACAGLMQMIMAGKEN----RLNVPW 128 (164)
Q Consensus 63 ~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~---------Gkrga~ag~F~~~~~~~e~----~Dnf~q 128 (164)
.++..++...+.-..+.|+.--|.+.+.-.=+++|+ ++.+. |+..-.-.+.........+ .+.|++
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~ 222 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA 222 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 345555667777777889999999998887788886 55554 2221111222221111112 233455
Q ss_pred HHHHhcCHHHHHHHHHHhhcccccCchhh
Q psy12002 129 AKCALGQYKEAEEMFLLVQNEGLKNDYVY 157 (164)
Q Consensus 129 a~a~~g~~kEAEe~~l~Iq~~~~kn~~~y 157 (164)
++..+|++++|-+.|...-.. ..+|+..
T Consensus 223 ~~~~lg~~~~Al~~~~~~~~~-~p~d~~~ 250 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKALKL-NPDDPLW 250 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHHHH-STT-HHH
T ss_pred Hhccccccccccccccccccc-ccccccc
Confidence 777779999998888775542 2344443
No 32
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=65.75 E-value=9.5 Score=20.66 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=21.4
Q ss_pred HHHHHhcCHHHHHHHHHHhhcccccC
Q psy12002 128 WAKCALGQYKEAEEMFLLVQNEGLKN 153 (164)
Q Consensus 128 qa~a~~g~~kEAEe~~l~Iq~~~~kn 153 (164)
.+++..|.+.+|+++|..+.+.+.+-
T Consensus 8 ~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 8 DGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 36677799999999999998877653
No 33
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=64.90 E-value=21 Score=22.57 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 65 SLQILQLIANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 65 af~LLq~IandcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
.-..+...+.-++.+|++--|...|+.+-..+|+
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3444456677788899999999999987777765
No 34
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=64.27 E-value=19 Score=30.97 Aligned_cols=94 Identities=16% Similarity=0.192 Sum_probs=49.8
Q ss_pred HHHhcCCchhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhcCCCc------cchhhh------HhhHHHHH
Q psy12002 55 LYLTMDTSPESLQILQ---------LIANESYRRAKFWFAFKAFDMLERLEPLA------EYWEGK------RGACAGLM 113 (164)
Q Consensus 55 lyl~~e~~~eaf~LLq---------~IandcY~~~~f~yA~kaFd~le~lD~~p------e~~~Gk------rga~ag~F 113 (164)
+|...++..+|+.+|. +.+.-.-+++.+-.|.|-+..+.+.|.+. +-|-+. -+....+|
T Consensus 111 i~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f 190 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIF 190 (290)
T ss_dssp HHCCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3444444444544444 44455566899999999999988887663 223221 22344444
Q ss_pred HHHHhcccc-ccch-hH--HHHHhcCHHHHHHHHHHhhc
Q psy12002 114 QMIMAGKEN-RLNV-PW--AKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 114 ~~~~~~~e~-~Dnf-~q--a~a~~g~~kEAEe~~l~Iq~ 148 (164)
.-+.....+ +..+ .. +.-.+|+|+|||+.+.-.-+
T Consensus 191 ~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 191 EELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 442221111 1111 12 44445999999999876543
No 35
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=63.92 E-value=14 Score=24.86 Aligned_cols=67 Identities=25% Similarity=0.361 Sum_probs=35.8
Q ss_pred chhhhhcccccccchhhhHHHHHHHHHH----------HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002 24 EGALQVLPPLIDVIPESRLNLVIYHLKQ----------AWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFD 90 (164)
Q Consensus 24 ~~Al~vLp~L~~~~pear~NLvi~~l~~----------Aw~lyl~~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd 90 (164)
+.|+..+-.+++..|--..+.++|.+.+ |++++-+.+..++.....-++|..+++.|++-.|.+++.
T Consensus 6 ~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 6 ENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 5666666666666662113344554444 666553322222222333355777788888888777764
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=61.38 E-value=17 Score=29.87 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---CCccchh---------hhHhhHHHHHHHHHhccccccch----hHHHHHhcC
Q psy12002 72 IANESYRRAKFWFAFKAFDMLERLE---PLAEYWE---------GKRGACAGLMQMIMAGKENRLNV----PWAKCALGQ 135 (164)
Q Consensus 72 IandcY~~~~f~yA~kaFd~le~lD---~~pe~~~---------Gkrga~ag~F~~~~~~~e~~Dnf----~qa~a~~g~ 135 (164)
...-.+..+.+--+...++.+.... +++.+|- |....+..+++..+....++... .|.+-..|+
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 3344566788877888877766544 4556665 44445666777665554332222 445555699
Q ss_pred HHHHHHHHHHhhccc
Q psy12002 136 YKEAEEMFLLVQNEG 150 (164)
Q Consensus 136 ~kEAEe~~l~Iq~~~ 150 (164)
++|+.+++.......
T Consensus 196 ~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 196 YDEAREALKRLLKAA 210 (280)
T ss_dssp HHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHC
Confidence 999888877665554
No 37
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=61.06 E-value=75 Score=30.29 Aligned_cols=26 Identities=12% Similarity=-0.153 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy12002 74 NESYRRAKFWFAFKAFDMLERLEPLA 99 (164)
Q Consensus 74 ndcY~~~~f~yA~kaFd~le~lD~~p 99 (164)
+....+|.+-.|..+++.+-..+|++
T Consensus 152 ~~l~~~g~~~eA~~~~~~~~~~~P~~ 177 (656)
T PRK15174 152 RTLVLMDKELQAISLARTQAQEVPPR 177 (656)
T ss_pred HHHHHCCChHHHHHHHHHHHHhCCCC
Confidence 33445666677777676655555543
No 38
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=60.05 E-value=20 Score=22.70 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=21.1
Q ss_pred hhHHHHHhcCHHHHHHHHHHhhcccccC
Q psy12002 126 VPWAKCALGQYKEAEEMFLLVQNEGLKN 153 (164)
Q Consensus 126 f~qa~a~~g~~kEAEe~~l~Iq~~~~kn 153 (164)
+.+++-..|++.+|++++..+....-.+
T Consensus 31 la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 31 LAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 4557778899999999999888776443
No 39
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=59.44 E-value=81 Score=26.44 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=19.5
Q ss_pred hhHHHHHhcCHHHHHHHHHHhhcccccC
Q psy12002 126 VPWAKCALGQYKEAEEMFLLVQNEGLKN 153 (164)
Q Consensus 126 f~qa~a~~g~~kEAEe~~l~Iq~~~~kn 153 (164)
.+.....+|+|++|-++|..+...-..+
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence 3457777799999999998876654433
No 40
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=55.60 E-value=1.5e+02 Score=30.14 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCc-----cchh------hhHhhHHHHHHHHHhccccccchh----HHHHHhcCHHHHH
Q psy12002 76 SYRRAKFWFAFKAFDMLERLEPLA-----EYWE------GKRGACAGLMQMIMAGKENRLNVP----WAKCALGQYKEAE 140 (164)
Q Consensus 76 cY~~~~f~yA~kaFd~le~lD~~p-----e~~~------Gkrga~ag~F~~~~~~~e~~Dnf~----qa~a~~g~~kEAE 140 (164)
-...|++-.|.++|+.+-..+|.. +||. |++..+...+..++........+. .++...|+++||.
T Consensus 122 l~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl 201 (1157)
T PRK11447 122 LATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGF 201 (1157)
T ss_pred HHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 345789999999999876665543 3665 666677777777666543322233 3444559999999
Q ss_pred HHHHHhhc
Q psy12002 141 EMFLLVQN 148 (164)
Q Consensus 141 e~~l~Iq~ 148 (164)
+.|..+..
T Consensus 202 ~~l~~~~~ 209 (1157)
T PRK11447 202 AVLEQMAK 209 (1157)
T ss_pred HHHHHHhh
Confidence 99987754
No 41
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=55.01 E-value=14 Score=19.79 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=19.8
Q ss_pred hHHHHHhcCHHHHHHHHHHhhccc
Q psy12002 127 PWAKCALGQYKEAEEMFLLVQNEG 150 (164)
Q Consensus 127 ~qa~a~~g~~kEAEe~~l~Iq~~~ 150 (164)
-.+++..|++.+|+++|..|.+..
T Consensus 7 i~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 7 ISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred HHHHHccchHHHHHHHHHHHhHCc
Confidence 357788899999999999987653
No 42
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=53.53 E-value=16 Score=20.68 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=17.3
Q ss_pred chhHHHHHhcCHHHHHHHHHHhh
Q psy12002 125 NVPWAKCALGQYKEAEEMFLLVQ 147 (164)
Q Consensus 125 nf~qa~a~~g~~kEAEe~~l~Iq 147 (164)
+++.++...|++.||++++..+-
T Consensus 7 ~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 7 NLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcchhhHHHHHHH
Confidence 46678888899999999876553
No 43
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=53.18 E-value=92 Score=23.14 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPLA 99 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~p 99 (164)
.+|...+..|+|--|...|..+-...++|
T Consensus 53 ~lA~~~~~~g~~~~A~~~l~~~~~~~~d~ 81 (145)
T PF09976_consen 53 QLAKAAYEQGDYDEAKAALEKALANAPDP 81 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCH
Confidence 46677777888888888888766655555
No 44
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=52.71 E-value=31 Score=20.90 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHhcCCC
Q psy12002 69 LQLIANESYRRAKFWFAFKAFD--MLERLEPL 98 (164)
Q Consensus 69 Lq~IandcY~~~~f~yA~kaFd--~le~lD~~ 98 (164)
+-+.|-.+|.+|.+.-|.+.|+ .+-.+|+.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4567888999999999999966 88888864
No 45
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=51.74 E-value=73 Score=21.56 Aligned_cols=67 Identities=18% Similarity=0.106 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhHhhHHHHHHHHHhccccccchhHHHHHhcCHHHHHHHHHHhhccccc
Q psy12002 73 ANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLK 152 (164)
Q Consensus 73 andcY~~~~f~yA~kaFd~le~lD~~pe~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~a~~g~~kEAEe~~l~Iq~~~~k 152 (164)
+...++.|++--|.+.|+.+-..+|+..+-+.-. ....+++...|++++|.+.+..+.+..-.
T Consensus 46 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~-----------------~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 46 GEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL-----------------LKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH-----------------HHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 3334556666666666665555554432211111 01123445568888888887766555434
Q ss_pred Cchh
Q psy12002 153 NDYV 156 (164)
Q Consensus 153 n~~~ 156 (164)
+..+
T Consensus 109 ~~~~ 112 (119)
T TIGR02795 109 SSAA 112 (119)
T ss_pred ChhH
Confidence 4433
No 46
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=51.20 E-value=90 Score=29.62 Aligned_cols=114 Identities=24% Similarity=0.287 Sum_probs=75.2
Q ss_pred chhhhhcccccccchhhhHHHHHHHHHHHHHHHHhcCCchhHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Q psy12002 24 EGALQVLPPLIDVIPESRLNLVIYHLKQAWDLYLTMDTSPESLQILQ--------------LIANESYRRAKFWFAFKAF 89 (164)
Q Consensus 24 ~~Al~vLp~L~~~~pear~NLvi~~l~~Aw~lyl~~e~~~eaf~LLq--------------~IandcY~~~~f~yA~kaF 89 (164)
+.|++-|-+|+.-.|. | +|++-=+-+++++.....+|.+.+| ..++.-.+.|....|.+.-
T Consensus 323 d~A~~~l~~L~~~~P~---N--~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L 397 (484)
T COG4783 323 DEALKLLQPLIAAQPD---N--PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRIL 397 (484)
T ss_pred chHHHHHHHHHHhCCC---C--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHH
Confidence 6677777777777762 2 4444457889999999999988888 4456677788888777777
Q ss_pred HHHHhcCC-CccchhhhHhhHHHHHHHHHhcc--ccccchhHHHHHhcCHHHHHHHHHHhhc
Q psy12002 90 DMLERLEP-LAEYWEGKRGACAGLMQMIMAGK--ENRLNVPWAKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 90 d~le~lD~-~pe~~~Gkrga~ag~F~~~~~~~--e~~Dnf~qa~a~~g~~kEAEe~~l~Iq~ 148 (164)
+-.-+-|| +|+.|.=.-.|+. ..|+ +.....++.++-.|++++|-+.+..-+.
T Consensus 398 ~~~~~~~p~dp~~w~~LAqay~------~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 398 NRYLFNDPEDPNGWDLLAQAYA------ELGNRAEALLARAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHhhcCCCCchHHHHHHHHHH------HhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 66555555 4788873322222 2233 2233445677777999999776655543
No 47
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=51.17 E-value=72 Score=30.08 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=13.1
Q ss_pred cCHHHHHHHHHHhhccc
Q psy12002 134 GQYKEAEEMFLLVQNEG 150 (164)
Q Consensus 134 g~~kEAEe~~l~Iq~~~ 150 (164)
|..++||+++.+...+.
T Consensus 276 ~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 276 GRIEEAEKTASLFTRED 292 (517)
T ss_pred CCHHHHHHHHHhhcCCC
Confidence 78888888887777665
No 48
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=50.81 E-value=2.4e+02 Score=27.29 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=12.4
Q ss_pred HhcCHHHHHHHHHHhhcc
Q psy12002 132 ALGQYKEAEEMFLLVQNE 149 (164)
Q Consensus 132 ~~g~~kEAEe~~l~Iq~~ 149 (164)
..|++++||..+..+...
T Consensus 439 ~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HhCCHHHHHHHHHHHHHh
Confidence 337888888887766543
No 49
>PF01524 Gemini_V1: Geminivirus V1 protein; InterPro: IPR002511 Disruption of the V1 gene in Tomato yellow leaf curl virus (TYLCV) stopped its ability to systemically infect Solanum lycopersicum (Tomato) (Lycopersicon esculentum) plants, suggesting that the V1 gene product is required for successful infection of the host [].; GO: 0019048 virus-host interaction, 0060967 negative regulation of gene silencing by RNA, 0030430 host cell cytoplasm
Probab=49.17 E-value=34 Score=24.80 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=32.7
Q ss_pred CCCccchhhhHhhHHHHHHHH-HhccccccchhH-------HHHHhcCHHHHHHHHH
Q psy12002 96 EPLAEYWEGKRGACAGLMQMI-MAGKENRLNVPW-------AKCALGQYKEAEEMFL 144 (164)
Q Consensus 96 D~~pe~~~Gkrga~ag~F~~~-~~~~e~~Dnf~q-------a~a~~g~~kEAEe~~l 144 (164)
.+-||+..|-| ||.++-.+- +....+++++.. ..--..||.||.-=+.
T Consensus 7 nefP~tvHGfR-CMLAiKYlq~~~~~Y~p~tlG~dlirdLI~vlR~rnY~eA~~RY~ 62 (78)
T PF01524_consen 7 NEFPETVHGFR-CMLAIKYLQLVEKTYSPDTLGYDLIRDLISVLRARNYVEASRRYS 62 (78)
T ss_pred ccCCccccchh-HHHHHHHHHHcccccCCCCccHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 35689999999 998876532 344567888854 2233389999975443
No 50
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=48.36 E-value=21 Score=19.53 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=16.5
Q ss_pred chhHHHHHhcCHHHHHHHHH
Q psy12002 125 NVPWAKCALGQYKEAEEMFL 144 (164)
Q Consensus 125 nf~qa~a~~g~~kEAEe~~l 144 (164)
.+++++...|..+||+..+.
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 35678889999999998874
No 51
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=47.81 E-value=27 Score=21.08 Aligned_cols=25 Identities=28% Similarity=0.197 Sum_probs=20.3
Q ss_pred hhHHHHHhcCHHHHHHHHHHhhccc
Q psy12002 126 VPWAKCALGQYKEAEEMFLLVQNEG 150 (164)
Q Consensus 126 f~qa~a~~g~~kEAEe~~l~Iq~~~ 150 (164)
+++++...|++++|+++|..+-.-.
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4668888899999999998876543
No 52
>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]. This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].
Probab=47.56 E-value=4.6 Score=27.84 Aligned_cols=34 Identities=24% Similarity=0.521 Sum_probs=26.1
Q ss_pred hhccCcchhhhhcccccccchhhhHHHHHHHHHHHH
Q psy12002 18 VVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQAW 53 (164)
Q Consensus 18 ~vFr~G~~Al~vLp~L~~~~pear~NLvi~~l~~Aw 53 (164)
++..+++.|+ ...+.++.|+++|-+|.+|+.++|
T Consensus 59 ~ii~D~~~~~--~~Ai~~vfP~~~~~~C~~H~~~n~ 92 (93)
T PF10551_consen 59 VIISDFDKAL--INAIKEVFPDARHQLCLFHILRNI 92 (93)
T ss_pred eeeccccHHH--HHHHHHHCCCceEehhHHHHHHhh
Confidence 5556666663 466777899999999999998754
No 53
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=44.23 E-value=35 Score=18.58 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=19.9
Q ss_pred HHHHHhcCHHHHHHHHHHhhcccc
Q psy12002 128 WAKCALGQYKEAEEMFLLVQNEGL 151 (164)
Q Consensus 128 qa~a~~g~~kEAEe~~l~Iq~~~~ 151 (164)
.+.+..|+++.|.++|..+.+.++
T Consensus 9 ~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 9 RACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC
Confidence 467777999999999999987654
No 54
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=42.82 E-value=1.6e+02 Score=30.07 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc-cchh---------hhHhhHHHHHHHHHhcccc----ccchhHHHHHhcCHHHH
Q psy12002 74 NESYRRAKFWFAFKAFDMLERLEPLA-EYWE---------GKRGACAGLMQMIMAGKEN----RLNVPWAKCALGQYKEA 139 (164)
Q Consensus 74 ndcY~~~~f~yA~kaFd~le~lD~~p-e~~~---------Gkrga~ag~F~~~~~~~e~----~Dnf~qa~a~~g~~kEA 139 (164)
..+.+.|++-.|.++|+-.-.+||+. +.+. |.......+|...+....+ -.+++.++...|++++|
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 33555666666666666655666543 2221 1222222333333332211 12223466666777777
Q ss_pred HHHHHHh
Q psy12002 140 EEMFLLV 146 (164)
Q Consensus 140 Ee~~l~I 146 (164)
+..+..+
T Consensus 697 ~~~l~~A 703 (987)
T PRK09782 697 QHYARLV 703 (987)
T ss_pred HHHHHHH
Confidence 7776655
No 55
>PF12854 PPR_1: PPR repeat
Probab=42.23 E-value=35 Score=19.89 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=16.1
Q ss_pred HHHHhcCHHHHHHHHHHhh
Q psy12002 129 AKCALGQYKEAEEMFLLVQ 147 (164)
Q Consensus 129 a~a~~g~~kEAEe~~l~Iq 147 (164)
+++..|+..||.++|..|+
T Consensus 16 ~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 16 GYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred HHHHCCCHHHHHHHHHhCc
Confidence 7777899999999998663
No 56
>PF13041 PPR_2: PPR repeat family
Probab=41.95 E-value=35 Score=20.90 Aligned_cols=34 Identities=26% Similarity=0.591 Sum_probs=26.5
Q ss_pred HHHHHhcCHHHHHHHHHHhhccccc-Cchhhhhhc
Q psy12002 128 WAKCALGQYKEAEEMFLLVQNEGLK-NDYVYISHL 161 (164)
Q Consensus 128 qa~a~~g~~kEAEe~~l~Iq~~~~k-n~~~y~swl 161 (164)
.+++..|++++|.++|..+++...+ +.++|.+.+
T Consensus 11 ~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li 45 (50)
T PF13041_consen 11 SGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILI 45 (50)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3667779999999999999998766 456665544
No 57
>PHA02337 putative high light inducible protein
Probab=41.62 E-value=21 Score=22.20 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=15.6
Q ss_pred CCccchhhhHhhHHHHHHHHH
Q psy12002 97 PLAEYWEGKRGACAGLMQMIM 117 (164)
Q Consensus 97 ~~pe~~~Gkrga~ag~F~~~~ 117 (164)
+.+|.|.||- ||+|+.-.+.
T Consensus 3 ~~aE~~NGRl-AMiGfv~~~~ 22 (35)
T PHA02337 3 PEAEIFNGWL-AMIGFVAAVG 22 (35)
T ss_pred cHHHHHhhHH-HHHHHHHHHH
Confidence 4579999955 9999887653
No 58
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=41.29 E-value=2.2e+02 Score=29.07 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccchhhh---------HhhHHHHHHHHHhcccccc-----chhHHHHHhcCHHHHHHHH
Q psy12002 78 RRAKFWFAFKAFDMLERLEPLAEYWEGK---------RGACAGLMQMIMAGKENRL-----NVPWAKCALGQYKEAEEMF 143 (164)
Q Consensus 78 ~~~~f~yA~kaFd~le~lD~~pe~~~Gk---------rga~ag~F~~~~~~~e~~D-----nf~qa~a~~g~~kEAEe~~ 143 (164)
..|++-.|...|+..-+++|+++.|-.. -.....+|...+.-. |++ ++..++...|.++||.+++
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3477777777777776777766555421 111222233222222 111 1223566668888887777
Q ss_pred HHh
Q psy12002 144 LLV 146 (164)
Q Consensus 144 l~I 146 (164)
...
T Consensus 667 ~~A 669 (987)
T PRK09782 667 ERA 669 (987)
T ss_pred HHH
Confidence 654
No 59
>KOG2376|consensus
Probab=41.03 E-value=3.1e+02 Score=27.06 Aligned_cols=93 Identities=20% Similarity=0.231 Sum_probs=57.7
Q ss_pred HHHHHHhcCCchhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhHhhHHHHHHHHHh--
Q psy12002 52 AWDLYLTMDTSPESLQILQ-----------LIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMA-- 118 (164)
Q Consensus 52 Aw~lyl~~e~~~eaf~LLq-----------~IandcY~~~~f~yA~kaFd~le~lD~~pe~~~Gkrga~ag~F~~~~~-- 118 (164)
|+..| +.+..++|...++ +=|.-||+.|.|-.|.+.|.-|-+-+ .+|+=+-+|..|..+--+...
T Consensus 86 AYc~Y-rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~-~dd~d~~~r~nl~a~~a~l~~~~ 163 (652)
T KOG2376|consen 86 AYCEY-RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN-SDDQDEERRANLLAVAAALQVQL 163 (652)
T ss_pred HHHHH-HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHhhhHHH
Confidence 66666 3444556665555 55666999999998888777764432 346666666555544332111
Q ss_pred ---ccc-cccchhH----H--HHHhcCHHHHHHHHHHh
Q psy12002 119 ---GKE-NRLNVPW----A--KCALGQYKEAEEMFLLV 146 (164)
Q Consensus 119 ---~~e-~~Dnf~q----a--~a~~g~~kEAEe~~l~I 146 (164)
-.+ +.+++.+ | +.-.|+|.+|+|.++.-
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 112 4445544 3 34449999999999876
No 60
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=40.69 E-value=1.6e+02 Score=22.39 Aligned_cols=108 Identities=11% Similarity=-0.029 Sum_probs=59.0
Q ss_pred chhhhHHHHHHHHHH-----HHHHHHhc---C-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhHh
Q psy12002 37 IPESRLNLVIYHLKQ-----AWDLYLTM---D-TSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRG 107 (164)
Q Consensus 37 ~pear~NLvi~~l~~-----Aw~lyl~~---e-~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~pe~~~Gkrg 107 (164)
...+..|+..++... |..+|.+. . +..+.-..+..++..+++.|++-.|.+++...-+++|+ +.....
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~- 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK--QPSALN- 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHH-
Confidence 345678888777664 66666543 1 12223345566677788899999999998886666653 222211
Q ss_pred hHHHHHHHHHhccccccchhHHHHHhcCHHHHHHHHHHhhccc
Q psy12002 108 ACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEG 150 (164)
Q Consensus 108 a~ag~F~~~~~~~e~~Dnf~qa~a~~g~~kEAEe~~l~Iq~~~ 150 (164)
-.+-++. ..|+- ...-.+.-.+...+++|.+++...-...
T Consensus 111 ~lg~~~~--~~g~~-~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 111 NIAVIYH--KRGEK-AEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHHHH--HcCCh-HhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 1122222 22221 0111112233456788888877665443
No 61
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=40.12 E-value=95 Score=19.55 Aligned_cols=29 Identities=14% Similarity=0.222 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 70 QLIANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 70 q~IandcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
...+...+..|++--|.+.|+-.=++||+
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~p~ 35 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIELDPN 35 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 34455556666666666666665555543
No 62
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=39.86 E-value=2.3e+02 Score=23.82 Aligned_cols=57 Identities=28% Similarity=0.356 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHh---cCCch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy12002 41 RLNLVIYHLKQAWDLYLT---MDTSP-----ESLQILQLIANESYRRAKFWFAFKAFDMLERLEP 97 (164)
Q Consensus 41 r~NLvi~~l~~Aw~lyl~---~e~~~-----eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~ 97 (164)
+++-.++-+++|.++.-+ ++..+ =-+.+|+.+|+.....+.+-+..||..+++-+..
T Consensus 51 ~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~ 115 (278)
T PF08631_consen 51 KYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLES 115 (278)
T ss_pred ChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 677889999999999733 33332 2678899999999999999999999998877743
No 63
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=39.69 E-value=2e+02 Score=27.37 Aligned_cols=127 Identities=9% Similarity=-0.019 Sum_probs=68.4
Q ss_pred hccCc--chhhhhcccccccc---hhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy12002 19 VFRGG--EGALQVLPPLIDVI---PESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRRAKFWFA 85 (164)
Q Consensus 19 vFr~G--~~Al~vLp~L~~~~---pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~~~f~yA 85 (164)
..+.| +.|++.+-.++... |++-++|.+-.+.. |-..|.+ .++.+ ......++..-...|++-.|
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~--~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ--PEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHHHH
Confidence 34444 56788777776644 45566666544433 3333333 23222 22334556666779999999
Q ss_pred HHHHHHHHhcCCC-ccchhh---------hHhhHHHHHHHHHhcc-ccccchhH--HHHHhcCHHHHHHHHHHhh
Q psy12002 86 FKAFDMLERLEPL-AEYWEG---------KRGACAGLMQMIMAGK-ENRLNVPW--AKCALGQYKEAEEMFLLVQ 147 (164)
Q Consensus 86 ~kaFd~le~lD~~-pe~~~G---------krga~ag~F~~~~~~~-e~~Dnf~q--a~a~~g~~kEAEe~~l~Iq 147 (164)
..+++-.-.++|+ ++.|.. +......++..++... .+.+-... ++...|++++|++.+..+-
T Consensus 130 i~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 130 ADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999988777776 455553 2223334444332221 11111111 2333477777777766543
No 64
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=38.71 E-value=1e+02 Score=19.56 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q psy12002 76 SYRRAKFWFAFKAFDMLERLEP 97 (164)
Q Consensus 76 cY~~~~f~yA~kaFd~le~lD~ 97 (164)
.+.+|.+-.|.+.|+-.-..+|
T Consensus 39 ~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 39 LFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHhccHHHHHHHHHHHHHHCC
Confidence 3445555555555555444444
No 65
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=38.57 E-value=2.4e+02 Score=24.00 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=13.9
Q ss_pred HHHHhcCHHHHHHHHHHhhcc
Q psy12002 129 AKCALGQYKEAEEMFLLVQNE 149 (164)
Q Consensus 129 a~a~~g~~kEAEe~~l~Iq~~ 149 (164)
++...|++++|.+++..+-..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 444568888888877665443
No 66
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.38 E-value=58 Score=27.44 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhccccccchhH---------HHHHh---cCHHHHHHHHHHhhc
Q psy12002 108 ACAGLMQMIMAGKENRLNVPW---------AKCAL---GQYKEAEEMFLLVQN 148 (164)
Q Consensus 108 a~ag~F~~~~~~~e~~Dnf~q---------a~a~~---g~~kEAEe~~l~Iq~ 148 (164)
++.+++..|-.-...++++.+ |.+.+ |+||+|+|+|..+-+
T Consensus 87 SAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 87 SALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 677777753332233334432 44444 999999999987655
No 67
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=38.02 E-value=71 Score=20.29 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=28.0
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12002 54 DLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLER 94 (164)
Q Consensus 54 ~lyl~~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~ 94 (164)
.-|++|++.+.|-.+|+.|.. .|.+---.+|-.+|.+
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl~----~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVIE----EGDEAQRQEARALLAQ 43 (44)
T ss_pred HHHHHcCChHHHHHHHHHHHH----cCCHHHHHHHHHHHhc
Confidence 569999999999999998762 4666666666666654
No 68
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=37.80 E-value=1.7e+02 Score=26.73 Aligned_cols=75 Identities=24% Similarity=0.322 Sum_probs=48.2
Q ss_pred CcchhhhhcccccccchhhhHHHHHHHHHHHHHHHHhcCCchhHHHHHH--------------HHHHHHHHHHHHHHHHH
Q psy12002 22 GGEGALQVLPPLIDVIPESRLNLVIYHLKQAWDLYLTMDTSPESLQILQ--------------LIANESYRRAKFWFAFK 87 (164)
Q Consensus 22 ~G~~Al~vLp~L~~~~pear~NLvi~~l~~Aw~lyl~~e~~~eaf~LLq--------------~IandcY~~~~f~yA~k 87 (164)
..+.|+.+|..|....||+-.= +..+|+.++...+|..+|+ .-|.-|...+++-.|.+
T Consensus 184 ~~~~ai~lle~L~~~~pev~~~--------LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 184 RYDEAIELLEKLRERDPEVAVL--------LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred cHHHHHHHHHHHHhcCCcHHHH--------HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 5577888888888888884332 3444444554445555554 44455777777877777
Q ss_pred HHHHHHhcCCCc-cchhh
Q psy12002 88 AFDMLERLEPLA-EYWEG 104 (164)
Q Consensus 88 aFd~le~lD~~p-e~~~G 104 (164)
...-.-++.|+. +.|..
T Consensus 256 iAk~av~lsP~~f~~W~~ 273 (395)
T PF09295_consen 256 IAKKAVELSPSEFETWYQ 273 (395)
T ss_pred HHHHHHHhCchhHHHHHH
Confidence 777766666654 66665
No 69
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=36.04 E-value=75 Score=17.16 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 70 QLIANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 70 q~IandcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
-.++...+.+|++-.|.+.|+-.-++||+
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 35667778899999999999988788875
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=34.25 E-value=3.7e+02 Score=24.89 Aligned_cols=74 Identities=8% Similarity=0.053 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc-cchh---------hhHhhHHHHHHHHHhccccccc---h--hHHHHHhcCHH
Q psy12002 73 ANESYRRAKFWFAFKAFDMLERLEPLA-EYWE---------GKRGACAGLMQMIMAGKENRLN---V--PWAKCALGQYK 137 (164)
Q Consensus 73 andcY~~~~f~yA~kaFd~le~lD~~p-e~~~---------Gkrga~ag~F~~~~~~~e~~Dn---f--~qa~a~~g~~k 137 (164)
+......|++-.|.++|+-.-+++|+. +.|- |+-.-....+...+.- .|.+. + ..++...|+++
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-~P~~~~~~~~~~~~~~~~g~~e 423 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL-DPTRAAAGITKLWITYYHTGID 423 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCChhhHHHHHHHHHhccCHH
Confidence 444566889999999999887888764 4332 2211222333322221 22221 1 22455569999
Q ss_pred HHHHHHHHhh
Q psy12002 138 EAEEMFLLVQ 147 (164)
Q Consensus 138 EAEe~~l~Iq 147 (164)
||++.+...-
T Consensus 424 eA~~~~~~~l 433 (553)
T PRK12370 424 DAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHH
Confidence 9998887653
No 71
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=34.02 E-value=48 Score=19.23 Aligned_cols=21 Identities=24% Similarity=0.272 Sum_probs=16.0
Q ss_pred chhHHHHHhcCHHHHHHHHHH
Q psy12002 125 NVPWAKCALGQYKEAEEMFLL 145 (164)
Q Consensus 125 nf~qa~a~~g~~kEAEe~~l~ 145 (164)
+++.++...|+|++|++++..
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 356678888999999998765
No 72
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=33.53 E-value=55 Score=30.19 Aligned_cols=65 Identities=17% Similarity=0.315 Sum_probs=48.2
Q ss_pred cccccchhhhHHHHHHHHHH----------------HHHHHHhcCCchhHHHHHH---------HHHHHHHHHHHHHHHH
Q psy12002 32 PLIDVIPESRLNLVIYHLKQ----------------AWDLYLTMDTSPESLQILQ---------LIANESYRRAKFWFAF 86 (164)
Q Consensus 32 ~L~~~~pear~NLvi~~l~~----------------Aw~lyl~~e~~~eaf~LLq---------~IandcY~~~~f~yA~ 86 (164)
.|+..+|+-..|-++-+|.+ =++|-|++++-++|+.+.+ -++..+-..|++-.|.
T Consensus 288 ~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe 367 (443)
T PF04053_consen 288 NLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAE 367 (443)
T ss_dssp HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHH
T ss_pred hhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHH
Confidence 34445677888888888887 6889999999999998885 5666677799999999
Q ss_pred HHHHHHHhcC
Q psy12002 87 KAFDMLERLE 96 (164)
Q Consensus 87 kaFd~le~lD 96 (164)
++|.-....+
T Consensus 368 ~c~~k~~d~~ 377 (443)
T PF04053_consen 368 ECYQKAKDFS 377 (443)
T ss_dssp HHHHHCT-HH
T ss_pred HHHHhhcCcc
Confidence 9998765443
No 73
>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus. The beta-sheet region contains a CXCX...XCXC sequence with Cys residues located in two proximal loops and pointing towards each other. This precise function of this set of bacterial proteins is, as yet, unknown []. ; PDB: 1GH9_A.
Probab=32.19 E-value=24 Score=24.99 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=16.4
Q ss_pred HHHHhcCHHHHHHHHHHhhccccc
Q psy12002 129 AKCALGQYKEAEEMFLLVQNEGLK 152 (164)
Q Consensus 129 a~a~~g~~kEAEe~~l~Iq~~~~k 152 (164)
+++...+.+||.++.+.+|.+++-
T Consensus 36 Il~~~~~~~eA~eiVrklQ~e~~G 59 (68)
T PF09082_consen 36 ILARAENAEEASEIVRKLQEEKYG 59 (68)
T ss_dssp -BS--SSHHHHHHHHHHHSS---S
T ss_pred EEEecCCHHHHHHHHHHHHHHhcc
Confidence 667778999999999999999753
No 74
>KOG3081|consensus
Probab=31.46 E-value=3.8e+02 Score=23.96 Aligned_cols=97 Identities=23% Similarity=0.297 Sum_probs=55.4
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhcCCCc------cchh------hhHhhHH
Q psy12002 52 AWDLYLTMDTSPESLQILQLIANE---------SYRRAKFWFAFKAFDMLERLEPLA------EYWE------GKRGACA 110 (164)
Q Consensus 52 Aw~lyl~~e~~~eaf~LLq~Iand---------cY~~~~f~yA~kaFd~le~lD~~p------e~~~------Gkrga~a 110 (164)
+-+.|..-++++||+..+...-+- -.++..+-.|.|.-...-..|.+- +-|- +|-+-..
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAf 193 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAF 193 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHH
Confidence 668889999999999998843222 234677777777776666666543 2222 2222333
Q ss_pred HHHHHHHhccccccch---hHHHH--HhcCHHHHHHHHHHhhcc
Q psy12002 111 GLMQMIMAGKENRLNV---PWAKC--ALGQYKEAEEMFLLVQNE 149 (164)
Q Consensus 111 g~F~~~~~~~e~~Dnf---~qa~a--~~g~~kEAEe~~l~Iq~~ 149 (164)
-+|+- +.+|-++-.. .+|.+ .+|+|+|||.++..-=+-
T Consensus 194 yifeE-~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 194 YIFEE-LSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHH-HhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 33332 3333222212 34333 239999999887755443
No 75
>KOG1126|consensus
Probab=31.44 E-value=92 Score=30.53 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=0.0
Q ss_pred CcchhhhhcccccccchhhhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH------------HHHHHHHHHHH
Q psy12002 22 GGEGALQVLPPLIDVIPESRLNLVIYHLKQAWDLYLTMDTSPESLQILQLIANESYR------------RAKFWFAFKAF 89 (164)
Q Consensus 22 ~G~~Al~vLp~L~~~~pear~NLvi~~l~~Aw~lyl~~e~~~eaf~LLq~IandcY~------------~~~f~yA~kaF 89 (164)
+.+.|+..+-+|.++++-.= -|+--+|+|.==-..-+.+...|++++.+-+-+-+ ....--..-|-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~--wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTG--WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHhcCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHhcCCCccchhhhHhhHHHHHHHHHhcc------------ccccchhHHHHHhcCHHHHHHHH
Q psy12002 90 DMLERLEPLAEYWEGKRGACAGLMQMIMAGK------------ENRLNVPWAKCALGQYKEAEEMF 143 (164)
Q Consensus 90 d~le~lD~~pe~~~Gkrga~ag~F~~~~~~~------------e~~Dnf~qa~a~~g~~kEAEe~~ 143 (164)
++++..-..||+| |++|-+|. +.++ .=+.+|.+|+.-+|..--+-|-|
T Consensus 412 ~Li~~~~~sPesW-----ca~GNcfS-LQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~ 471 (638)
T KOG1126|consen 412 DLIDTDPNSPESW-----CALGNCFS-LQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEF 471 (638)
T ss_pred HHHhhCCCCcHHH-----HHhcchhh-hhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHH
No 76
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=30.54 E-value=57 Score=17.48 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=18.0
Q ss_pred hhHHHHHhcCHHHHHHHHHHhhc
Q psy12002 126 VPWAKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 126 f~qa~a~~g~~kEAEe~~l~Iq~ 148 (164)
.+++....|++.+|.+.|..+-+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 45577778999999999887754
No 77
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=30.46 E-value=5.3e+02 Score=25.30 Aligned_cols=93 Identities=8% Similarity=-0.052 Sum_probs=48.7
Q ss_pred HHHHHhcCCchhHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhcCCCccchh----------hhHhh
Q psy12002 53 WDLYLTMDTSPESLQILQL--------------IANESYRRAKFWFAFKAFDMLERLEPLAEYWE----------GKRGA 108 (164)
Q Consensus 53 w~lyl~~e~~~eaf~LLq~--------------IandcY~~~~f~yA~kaFd~le~lD~~pe~~~----------Gkrga 108 (164)
-++=.+.+..+||..++.. .+.-+.+.+++-.|....+-+-..||+.=... |+-.-
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHH
Confidence 3444556666666666652 33446777777777777777655555542222 22222
Q ss_pred HHHHHHHHHhccccc--c---chhHHHHHhcCHHHHHHHHHHh
Q psy12002 109 CAGLMQMIMAGKENR--L---NVPWAKCALGQYKEAEEMFLLV 146 (164)
Q Consensus 109 ~ag~F~~~~~~~e~~--D---nf~qa~a~~g~~kEAEe~~l~I 146 (164)
...+|..+++.. |+ . +++.++-.+|..++|+..|+..
T Consensus 173 A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 173 ADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334455544411 11 1 1122444457777777776654
No 78
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=30.31 E-value=1e+02 Score=16.92 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
.++..++.+|++-.|.++|.-.-++||+
T Consensus 6 ~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 6 NLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4667778899999999999887788875
No 79
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=29.53 E-value=85 Score=20.61 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPLA 99 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~p 99 (164)
.+|-.+|+.|++-.|.+.-+.+=++||+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 46778899999999999999998888765
No 80
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=28.68 E-value=1.7e+02 Score=25.64 Aligned_cols=79 Identities=16% Similarity=0.071 Sum_probs=48.4
Q ss_pred hhccCc--chhhhhccccccc---chhhhHHHHHHHHHH-----HHHHHH---hcCCch-hHHHHHHHHHHHHHHHHHHH
Q psy12002 18 VVFRGG--EGALQVLPPLIDV---IPESRLNLVIYHLKQ-----AWDLYL---TMDTSP-ESLQILQLIANESYRRAKFW 83 (164)
Q Consensus 18 ~vFr~G--~~Al~vLp~L~~~---~pear~NLvi~~l~~-----Aw~lyl---~~e~~~-eaf~LLq~IandcY~~~~f~ 83 (164)
..|++| +.|+..+-..+.. .+.+..|+..-+++. |...+- ++++.. +++ -..+..++..|++-
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~---~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAY---LRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHH---HHHHHHHHHhCCHH
Confidence 345544 4666655555553 456777776665554 333322 223222 222 23467789999999
Q ss_pred HHHHHHHHHHhcCCCc
Q psy12002 84 FAFKAFDMLERLEPLA 99 (164)
Q Consensus 84 yA~kaFd~le~lD~~p 99 (164)
.|.++|+..-++||+.
T Consensus 88 eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 88 TAKAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 9999999988888874
No 81
>KOG1129|consensus
Probab=28.54 E-value=30 Score=32.07 Aligned_cols=78 Identities=23% Similarity=0.333 Sum_probs=54.3
Q ss_pred cCcchhhhhcccccccchhhhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH---------HHHHHHHH-----HHH
Q psy12002 21 RGGEGALQVLPPLIDVIPESRLNLVIYHLKQAWDLYLTMDTSPESLQILQLIANE---------SYRRAKFW-----FAF 86 (164)
Q Consensus 21 r~G~~Al~vLp~L~~~~pear~NLvi~~l~~Aw~lyl~~e~~~eaf~LLq~Iand---------cY~~~~f~-----yA~ 86 (164)
.+++.|+.++..-+|+.|+- |.|.++.| .+|..|+..+||..|-|.++.. |..+|+|| .|.
T Consensus 270 dQP~~AL~~~~~gld~fP~~----VT~l~g~A-Ri~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Al 344 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFD----VTYLLGQA-RIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMAL 344 (478)
T ss_pred ccHHHHHHHHhhhhhcCCch----hhhhhhhH-HHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHH
Confidence 47888888888888888862 55666664 5678889999999998877643 88877776 566
Q ss_pred HHHHHHHhcC-CCccchh
Q psy12002 87 KAFDMLERLE-PLAEYWE 103 (164)
Q Consensus 87 kaFd~le~lD-~~pe~~~ 103 (164)
+.+.-+=.+- .+||-.-
T Consensus 345 ryYRRiLqmG~~speLf~ 362 (478)
T KOG1129|consen 345 RYYRRILQMGAQSPELFC 362 (478)
T ss_pred HHHHHHHHhcCCChHHHh
Confidence 6666544433 2345443
No 82
>KOG2003|consensus
Probab=28.50 E-value=4.1e+02 Score=26.02 Aligned_cols=19 Identities=11% Similarity=0.415 Sum_probs=13.9
Q ss_pred HHHHHHhcCCchhHHHHHH
Q psy12002 52 AWDLYLTMDTSPESLQILQ 70 (164)
Q Consensus 52 Aw~lyl~~e~~~eaf~LLq 70 (164)
.-.+|.-+|+++.|..++-
T Consensus 564 ianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLM 582 (840)
T ss_pred HHHHHHHhhCHHHHHHHHH
Confidence 4457777888888877765
No 83
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=27.45 E-value=1.8e+02 Score=26.88 Aligned_cols=61 Identities=30% Similarity=0.386 Sum_probs=38.4
Q ss_pred HHHHH-HHhcCCCccchhhhHhhHHHHHHHHHhcc-------------ccccchhH---HHHH-------hcCHHHHHHH
Q psy12002 87 KAFDM-LERLEPLAEYWEGKRGACAGLMQMIMAGK-------------ENRLNVPW---AKCA-------LGQYKEAEEM 142 (164)
Q Consensus 87 kaFd~-le~lD~~pe~~~Gkrga~ag~F~~~~~~~-------------e~~Dnf~q---a~a~-------~g~~kEAEe~ 142 (164)
||-|. ++-++.+|++.+--- +.-..|+ -+|+ .|+-+|.| |+-. .|-+.-||++
T Consensus 53 KAvdlF~e~l~~d~~t~e~~l-tLGnLfR--sRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~ 129 (389)
T COG2956 53 KAVDLFLEMLQEDPETFEAHL-TLGNLFR--SRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDI 129 (389)
T ss_pred hHHHHHHHHHhcCchhhHHHH-HHHHHHH--hcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 34443 344556777777533 3334455 5665 47777776 3332 3889999999
Q ss_pred HHHhhccc
Q psy12002 143 FLLVQNEG 150 (164)
Q Consensus 143 ~l~Iq~~~ 150 (164)
|....++.
T Consensus 130 f~~L~de~ 137 (389)
T COG2956 130 FNQLVDEG 137 (389)
T ss_pred HHHHhcch
Confidence 99998853
No 84
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=25.23 E-value=2.1e+02 Score=25.29 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=21.9
Q ss_pred HHHHHHhcCCchhHHHHHH-HHHHHHHHHHHHHH
Q psy12002 52 AWDLYLTMDTSPESLQILQ-LIANESYRRAKFWF 84 (164)
Q Consensus 52 Aw~lyl~~e~~~eaf~LLq-~IandcY~~~~f~y 84 (164)
+-..|+..+.-.+|..|-| .|||..|--=+.-|
T Consensus 243 L~K~~l~~G~~~~A~~LfKLaiannVynfVE~Ry 276 (297)
T COG4785 243 LGKYYLSLGDLDEATALFKLAVANNVYNFVEHRY 276 (297)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4557777888888888887 56777766333333
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=24.42 E-value=4.3e+02 Score=22.21 Aligned_cols=73 Identities=18% Similarity=0.173 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cchhhhHhh----------HHHHHHHHHhccccccchh--H--HHHHhcC
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPLA-EYWEGKRGA----------CAGLMQMIMAGKENRLNVP--W--AKCALGQ 135 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~p-e~~~Gkrga----------~ag~F~~~~~~~e~~Dnf~--q--a~a~~g~ 135 (164)
.++......|++--|..+|+..=++||+. ..|.+ +|. ....|...+.. .|.+... | .....++
T Consensus 103 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~-lg~~l~~~g~~~eA~~~~~~al~~-~P~~~~~~~~~~l~~~~~~ 180 (296)
T PRK11189 103 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLN-RGIALYYGGRYELAQDDLLAFYQD-DPNDPYRALWLYLAESKLD 180 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHccCC
Confidence 34455677999999999999988888875 33333 432 23334433322 3333322 2 2334588
Q ss_pred HHHHHHHHHH
Q psy12002 136 YKEAEEMFLL 145 (164)
Q Consensus 136 ~kEAEe~~l~ 145 (164)
+++|.+.|..
T Consensus 181 ~~~A~~~l~~ 190 (296)
T PRK11189 181 PKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHH
Confidence 9999988854
No 86
>KOG4162|consensus
Probab=24.07 E-value=7.7e+02 Score=25.05 Aligned_cols=89 Identities=29% Similarity=0.279 Sum_probs=60.3
Q ss_pred HHHHHHhcCCchhHHHHHH-------HHHHHHHH-------HHHHHHHHHHHHHHHhcCCCccchhhhHhhHHHHHHHHH
Q psy12002 52 AWDLYLTMDTSPESLQILQ-------LIANESYR-------RAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIM 117 (164)
Q Consensus 52 Aw~lyl~~e~~~eaf~LLq-------~IandcY~-------~~~f~yA~kaFd~le~lD~~pe~~~Gkrga~ag~F~~~~ 117 (164)
+-+++++.++.++++.-|. ..+.-||. .|+...|..+|.+- ++-+|++.+-++ |.+-+.- -
T Consensus 656 aa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A--l~ldP~hv~s~~-Ala~~ll--e 730 (799)
T KOG4162|consen 656 AADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA--LALDPDHVPSMT-ALAELLL--E 730 (799)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH--HhcCCCCcHHHH-HHHHHHH--H
Confidence 7789999999999986666 44555676 57788899999875 555577777766 5555554 3
Q ss_pred hccc---------------cccch-hH-----HHHHhcCHHHHHHHHHH
Q psy12002 118 AGKE---------------NRLNV-PW-----AKCALGQYKEAEEMFLL 145 (164)
Q Consensus 118 ~~~e---------------~~Dnf-~q-----a~a~~g~~kEAEe~~l~ 145 (164)
.|.. ++++= +| +.-..|..++|=++|+.
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 3431 11111 22 56666999999998875
No 87
>KOG1497|consensus
Probab=23.07 E-value=3.5e+02 Score=24.98 Aligned_cols=62 Identities=23% Similarity=0.196 Sum_probs=40.0
Q ss_pred HHHHHHhcCCchhHHHHHH-------HHHHH--------HHH-----HHHHHHHHHHHHHHHhcCC--CccchhhhHhhH
Q psy12002 52 AWDLYLTMDTSPESLQILQ-------LIANE--------SYR-----RAKFWFAFKAFDMLERLEP--LAEYWEGKRGAC 109 (164)
Q Consensus 52 Aw~lyl~~e~~~eaf~LLq-------~Iand--------cY~-----~~~f~yA~kaFd~le~lD~--~pe~~~Gkrga~ 109 (164)
.-.+||+.++..+|..++- .-+|+ ||. .+.|..|++-|-.+..-.- +.++-+... ++
T Consensus 150 iarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ki~~e~~~~~aL~-~a 228 (399)
T KOG1497|consen 150 IARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQRKIVDESERLEALK-KA 228 (399)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH-Hh
Confidence 6779999999888766544 11232 887 8999999998887655332 334444433 44
Q ss_pred HHHHH
Q psy12002 110 AGLMQ 114 (164)
Q Consensus 110 ag~F~ 114 (164)
+-|.-
T Consensus 229 ~~Ctl 233 (399)
T KOG1497|consen 229 LQCTL 233 (399)
T ss_pred Hhhee
Confidence 44444
No 88
>PF07822 Toxin_13: Neurotoxin B-IV-like protein; InterPro: IPR012497 The members of this family resemble neurotoxin B-IV (P01525 from SWISSPROT), which is a crustacean-selective neurotoxin produced by the marine worm Cerebratulus lacteus. This highly cationic peptide is approximately 55 residues and is arranged to form two antiparallel helices connected by a well-defined loop in a hairpin structure. The branches of the hairpin are linked by four disulphide bonds. Three residues identified as being important for activity, namely Arg-17, -25 and -34, are found on the same face of the molecule, while another residue important for activity, Trp30, is on the opposite side. The protein's mode of action is not entirely understood, but it may act on voltage-gated sodium channels, possibly by binding to an as yet uncharacterised site on these proteins. Its site of interaction may also be less specific, for example it may interact with negatively charged membrane lipids []. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1VIB_A.
Probab=22.76 E-value=48 Score=22.14 Aligned_cols=13 Identities=54% Similarity=1.140 Sum_probs=9.5
Q ss_pred cchhhhHhhHHHH
Q psy12002 100 EYWEGKRGACAGL 112 (164)
Q Consensus 100 e~~~Gkrga~ag~ 112 (164)
--|.||||-|+.-
T Consensus 28 gkwagkrgkcaah 40 (55)
T PF07822_consen 28 GKWAGKRGKCAAH 40 (55)
T ss_dssp GGGTT-HHHHHHH
T ss_pred ceeccccCcchhh
Confidence 5799999988753
No 89
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=21.81 E-value=2.8e+02 Score=20.49 Aligned_cols=55 Identities=24% Similarity=0.298 Sum_probs=30.5
Q ss_pred hhccCc--chhhhhcccccccchhh-hHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q psy12002 18 VVFRGG--EGALQVLPPLIDVIPES-RLNLVIYHLKQAWDLYLTMDTSPESLQILQLIANE 75 (164)
Q Consensus 18 ~vFr~G--~~Al~vLp~L~~~~pea-r~NLvi~~l~~Aw~lyl~~e~~~eaf~LLq~Iand 75 (164)
..|..| +.|...|..+++..|.- -.+++-+++ -.+++..+..++|..+|+.+.+.
T Consensus 57 ~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L---A~~~~~~~~~d~Al~~L~~~~~~ 114 (145)
T PF09976_consen 57 AAYEQGDYDEAKAALEKALANAPDPELKPLARLRL---ARILLQQGQYDEALATLQQIPDE 114 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH---HHHHHHcCCHHHHHHHHHhccCc
Confidence 445555 67777787777754221 112222222 24566777777777777754433
Done!