Query psy12002
Match_columns 164
No_of_seqs 102 out of 112
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 16:12:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 94.0 0.94 3.2E-05 38.0 12.3 74 74-148 381-469 (597)
2 3gyz_A Chaperone protein IPGC; 93.8 0.28 9.6E-06 36.2 7.9 20 127-146 111-130 (151)
3 3mkr_A Coatomer subunit epsilo 93.6 0.48 1.6E-05 37.9 9.3 118 24-146 82-226 (291)
4 3qky_A Outer membrane assembly 93.4 1.6 5.5E-05 33.0 11.7 84 18-101 24-132 (261)
5 2pl2_A Hypothetical conserved 93.2 1.9 6.3E-05 32.3 11.7 128 18-148 14-179 (217)
6 2xpi_A Anaphase-promoting comp 93.0 1.6 5.3E-05 36.7 12.0 25 73-97 448-472 (597)
7 2xcb_A PCRH, regulatory protei 92.9 1 3.4E-05 31.3 9.2 21 127-147 93-113 (142)
8 3hym_B Cell division cycle pro 91.9 2.7 9.2E-05 31.7 11.1 19 129-147 279-297 (330)
9 2vgx_A Chaperone SYCD; alterna 91.8 1.5 5.2E-05 31.2 9.2 53 73-146 62-115 (148)
10 3qky_A Outer membrane assembly 91.6 3.4 0.00012 31.1 12.1 114 35-148 12-176 (261)
11 2pl2_A Hypothetical conserved 91.4 1.4 4.9E-05 32.9 9.0 111 37-150 4-148 (217)
12 2y4t_A DNAJ homolog subfamily 91.1 3.3 0.00011 33.2 11.5 75 73-148 264-357 (450)
13 2ho1_A Type 4 fimbrial biogene 90.4 3.7 0.00012 30.1 10.3 27 71-97 146-172 (252)
14 2yhc_A BAMD, UPF0169 lipoprote 90.0 4.7 0.00016 30.1 11.2 71 79-149 109-213 (225)
15 3sz7_A HSC70 cochaperone (SGT) 89.1 1.8 6.3E-05 30.4 7.5 21 127-147 86-106 (164)
16 4i17_A Hypothetical protein; T 89.0 5.3 0.00018 29.2 10.6 22 127-148 124-145 (228)
17 1fch_A Peroxisomal targeting s 89.0 5.3 0.00018 30.9 10.7 23 76-98 191-213 (368)
18 3qou_A Protein YBBN; thioredox 88.9 1.8 6.2E-05 34.1 8.1 78 71-148 156-247 (287)
19 3vtx_A MAMA; tetratricopeptide 88.7 4.8 0.00016 28.3 10.9 114 24-146 22-167 (184)
20 4gco_A Protein STI-1; structur 88.6 2.1 7.3E-05 29.6 7.5 79 69-147 16-108 (126)
21 2y4t_A DNAJ homolog subfamily 88.6 2.3 7.9E-05 34.1 8.6 17 130-146 267-283 (450)
22 3urz_A Uncharacterized protein 88.2 4.8 0.00016 29.8 9.7 132 11-147 6-184 (208)
23 3fp2_A TPR repeat-containing p 87.6 3.6 0.00012 33.7 9.3 19 128-146 470-488 (537)
24 2xev_A YBGF; tetratricopeptide 87.5 4.4 0.00015 26.5 9.3 63 68-147 41-103 (129)
25 3upv_A Heat shock protein STI1 87.4 4.5 0.00015 26.8 8.3 78 70-147 8-99 (126)
26 4eqf_A PEX5-related protein; a 87.3 5 0.00017 31.3 9.7 23 76-98 187-209 (365)
27 3ieg_A DNAJ homolog subfamily 87.2 8.1 0.00028 29.2 11.7 77 73-149 241-335 (359)
28 3q49_B STIP1 homology and U bo 86.8 2.1 7.2E-05 28.5 6.3 80 68-147 11-104 (137)
29 3mkq_A Coatomer beta'-subunit; 86.6 5.3 0.00018 35.0 10.3 44 53-96 659-711 (814)
30 1hh8_A P67PHOX, NCF-2, neutrop 86.6 5.6 0.00019 28.4 9.0 80 18-99 15-104 (213)
31 1w3b_A UDP-N-acetylglucosamine 86.6 5.8 0.0002 31.4 9.7 24 75-98 246-269 (388)
32 3uq3_A Heat shock protein STI1 86.5 6 0.00021 28.5 9.1 20 129-148 182-201 (258)
33 2gw1_A Mitochondrial precursor 85.3 3.5 0.00012 33.4 8.0 83 66-149 6-102 (514)
34 4gyw_A UDP-N-acetylglucosamine 84.9 3.8 0.00013 38.0 8.9 137 8-146 5-171 (723)
35 2q7f_A YRRB protein; TPR, prot 84.6 9.2 0.00031 27.5 10.8 20 129-148 202-221 (243)
36 3ieg_A DNAJ homolog subfamily 84.4 11 0.00039 28.4 11.9 72 24-97 20-102 (359)
37 3edt_B KLC 2, kinesin light ch 84.3 6.4 0.00022 28.7 8.4 35 60-94 79-113 (283)
38 2r5s_A Uncharacterized protein 84.3 5.9 0.0002 28.2 8.1 34 18-51 15-53 (176)
39 2yhc_A BAMD, UPF0169 lipoprote 84.1 11 0.00037 28.0 13.0 81 68-148 43-175 (225)
40 2lni_A Stress-induced-phosphop 83.8 6.7 0.00023 25.3 8.3 22 127-148 91-112 (133)
41 1qqe_A Vesicular transport pro 83.5 6.7 0.00023 30.6 8.7 88 52-153 103-191 (292)
42 3vtx_A MAMA; tetratricopeptide 83.5 9.4 0.00032 26.7 9.7 80 69-148 42-135 (184)
43 1xnf_A Lipoprotein NLPI; TPR, 83.5 11 0.00038 27.6 11.5 23 127-149 222-244 (275)
44 3mkr_A Coatomer subunit epsilo 83.3 15 0.00052 28.9 11.2 128 18-147 110-262 (291)
45 4abn_A Tetratricopeptide repea 83.0 6.6 0.00023 33.4 9.1 120 24-147 120-285 (474)
46 3u4t_A TPR repeat-containing p 82.4 13 0.00043 27.4 12.3 79 71-149 147-250 (272)
47 2q7f_A YRRB protein; TPR, prot 82.0 12 0.0004 26.8 9.6 124 24-149 40-188 (243)
48 1w3b_A UDP-N-acetylglucosamine 81.7 7.7 0.00026 30.7 8.5 9 134-142 217-225 (388)
49 3as5_A MAMA; tetratricopeptide 81.7 9.8 0.00033 25.7 11.0 125 22-149 23-173 (186)
50 2dba_A Smooth muscle cell asso 81.5 9.1 0.00031 25.2 7.7 61 66-147 65-126 (148)
51 4gcn_A Protein STI-1; structur 81.4 10 0.00035 25.9 8.1 80 67-146 9-109 (127)
52 3rkv_A Putative peptidylprolyl 80.2 12 0.00042 25.9 8.3 31 65-95 10-40 (162)
53 2vgx_A Chaperone SYCD; alterna 80.2 7.8 0.00027 27.3 7.3 87 18-106 30-130 (148)
54 4gyw_A UDP-N-acetylglucosamine 80.0 6.3 0.00022 36.4 8.4 108 37-147 8-138 (723)
55 2ho1_A Type 4 fimbrial biogene 79.8 15 0.00052 26.7 11.8 125 22-149 52-204 (252)
56 3gw4_A Uncharacterized protein 79.5 13 0.00046 25.9 10.3 56 36-91 24-91 (203)
57 1hxi_A PEX5, peroxisome target 79.2 3.8 0.00013 28.0 5.2 21 127-147 92-112 (121)
58 2c2l_A CHIP, carboxy terminus 78.9 8.4 0.00029 30.1 7.8 78 69-146 7-98 (281)
59 3uq3_A Heat shock protein STI1 78.6 16 0.00054 26.2 10.0 81 68-148 141-235 (258)
60 1elw_A TPR1-domain of HOP; HOP 78.3 9.8 0.00034 23.7 9.0 24 127-150 79-102 (118)
61 3ulq_A Response regulator aspa 78.2 17 0.00056 29.0 9.5 43 52-94 169-212 (383)
62 3q15_A PSP28, response regulat 78.2 17 0.00057 29.0 9.5 125 25-149 126-290 (378)
63 3k9i_A BH0479 protein; putativ 78.0 12 0.00042 24.6 7.8 62 64-145 25-86 (117)
64 3fp2_A TPR repeat-containing p 78.0 16 0.00055 29.8 9.5 74 73-146 317-404 (537)
65 3ro2_A PINS homolog, G-protein 77.8 18 0.00061 26.7 9.0 23 126-148 309-331 (338)
66 2kck_A TPR repeat; tetratricop 77.8 10 0.00034 23.5 6.9 61 71-149 45-106 (112)
67 3cv0_A Peroxisome targeting si 77.7 15 0.00051 27.5 8.6 79 18-98 30-121 (327)
68 1fch_A Peroxisomal targeting s 77.7 22 0.00074 27.3 11.4 29 71-99 137-165 (368)
69 1elr_A TPR2A-domain of HOP; HO 77.7 8.6 0.00029 24.4 6.4 82 24-105 21-118 (131)
70 3edt_B KLC 2, kinesin light ch 77.3 17 0.00058 26.3 8.6 22 127-148 134-155 (283)
71 3nf1_A KLC 1, kinesin light ch 76.8 20 0.00069 26.5 9.2 22 127-148 160-181 (311)
72 3ro3_A PINS homolog, G-protein 76.6 13 0.00045 24.2 9.1 21 126-146 135-155 (164)
73 4abn_A Tetratricopeptide repea 76.5 9.4 0.00032 32.4 7.9 93 55-148 111-249 (474)
74 3sf4_A G-protein-signaling mod 76.2 25 0.00084 27.2 9.8 44 52-95 213-256 (406)
75 2vsy_A XCC0866; transferase, g 75.9 31 0.0011 29.3 11.1 122 24-147 6-155 (568)
76 2vq2_A PILW, putative fimbrial 75.7 18 0.00061 25.3 10.7 75 18-94 17-105 (225)
77 3u4t_A TPR repeat-containing p 74.9 22 0.00076 26.0 10.7 81 18-98 12-106 (272)
78 3sf4_A G-protein-signaling mod 74.4 19 0.00065 27.8 8.6 67 66-146 267-333 (406)
79 2gw1_A Mitochondrial precursor 73.9 33 0.0011 27.5 10.2 16 129-144 458-473 (514)
80 3mv2_B Coatomer subunit epsilo 73.6 34 0.0012 28.7 10.6 120 26-148 85-239 (310)
81 3cv0_A Peroxisome targeting si 73.6 26 0.00088 26.1 10.4 119 24-144 155-310 (327)
82 4eqf_A PEX5-related protein; a 72.6 31 0.0011 26.7 10.6 122 24-147 82-240 (365)
83 1elr_A TPR2A-domain of HOP; HO 72.2 16 0.00054 23.1 8.3 64 71-148 43-107 (131)
84 4g26_A Pentatricopeptide repea 72.2 12 0.00043 32.7 7.8 32 129-160 149-181 (501)
85 2pzi_A Probable serine/threoni 72.1 4 0.00014 36.7 4.7 76 71-147 472-561 (681)
86 2ifu_A Gamma-SNAP; membrane fu 71.5 22 0.00077 27.7 8.5 39 52-91 102-140 (307)
87 1a17_A Serine/threonine protei 70.9 21 0.0007 23.9 8.7 28 71-98 52-79 (166)
88 2vyi_A SGTA protein; chaperone 70.2 18 0.0006 22.8 8.7 23 127-149 87-109 (131)
89 1na0_A Designed protein CTPR3; 69.1 18 0.00062 22.5 8.2 23 126-148 83-105 (125)
90 1p5q_A FKBP52, FK506-binding p 68.8 20 0.00069 28.8 7.9 31 68-98 198-228 (336)
91 4ga2_A E3 SUMO-protein ligase 68.6 3.5 0.00012 29.2 2.9 26 73-98 72-97 (150)
92 3as5_A MAMA; tetratricopeptide 67.7 25 0.00084 23.6 9.2 109 40-149 10-139 (186)
93 3hym_B Cell division cycle pro 67.5 36 0.0012 25.3 11.0 79 71-150 95-189 (330)
94 2kat_A Uncharacterized protein 67.3 22 0.00076 23.0 6.6 31 68-98 21-51 (115)
95 4a1s_A PINS, partner of inscut 66.4 26 0.00089 27.5 7.9 22 126-147 349-370 (411)
96 2xcb_A PCRH, regulatory protei 65.7 25 0.00086 23.9 6.9 28 71-98 57-84 (142)
97 3ro2_A PINS homolog, G-protein 65.5 38 0.0013 24.9 9.6 20 127-146 270-289 (338)
98 2ifu_A Gamma-SNAP; membrane fu 65.5 46 0.0016 25.9 9.8 48 50-97 139-186 (307)
99 3ulq_A Response regulator aspa 64.2 44 0.0015 26.4 9.0 56 39-94 225-292 (383)
100 2l6j_A TPR repeat-containing p 64.1 24 0.0008 22.0 7.5 31 68-98 6-36 (111)
101 3nf1_A KLC 1, kinesin light ch 63.4 42 0.0014 24.7 9.6 22 126-147 201-222 (311)
102 3ro3_A PINS homolog, G-protein 63.3 28 0.00094 22.6 9.6 81 52-146 35-115 (164)
103 3qou_A Protein YBBN; thioredox 63.2 23 0.0008 27.5 7.0 70 76-145 195-280 (287)
104 1xnf_A Lipoprotein NLPI; TPR, 62.7 41 0.0014 24.4 11.5 22 76-97 87-108 (275)
105 4g26_A Pentatricopeptide repea 62.5 52 0.0018 28.6 9.8 128 22-152 41-207 (501)
106 4a1s_A PINS, partner of inscut 62.1 55 0.0019 25.6 9.2 46 52-97 209-254 (411)
107 2vq2_A PILW, putative fimbrial 61.4 38 0.0013 23.6 10.5 79 70-148 46-141 (225)
108 1qqe_A Vesicular transport pro 60.2 57 0.0019 25.1 11.6 48 52-99 144-191 (292)
109 4f3v_A ESX-1 secretion system 59.9 15 0.0005 30.5 5.5 70 78-147 18-129 (282)
110 3q15_A PSP28, response regulat 59.3 65 0.0022 25.5 10.1 57 38-95 222-290 (378)
111 3urz_A Uncharacterized protein 59.3 49 0.0017 24.1 8.9 32 72-103 60-92 (208)
112 2r5s_A Uncharacterized protein 59.2 43 0.0015 23.5 9.8 22 76-97 50-71 (176)
113 2xev_A YBGF; tetratricopeptide 58.8 33 0.0011 22.1 6.2 60 72-148 8-67 (129)
114 3ma5_A Tetratricopeptide repea 58.3 34 0.0012 22.0 6.9 31 68-98 9-39 (100)
115 2fo7_A Synthetic consensus TPR 57.9 31 0.0011 21.5 9.6 21 127-147 110-130 (136)
116 2fbn_A 70 kDa peptidylprolyl i 57.7 48 0.0016 23.6 8.9 27 71-97 93-119 (198)
117 3gw4_A Uncharacterized protein 57.5 44 0.0015 23.1 9.4 81 52-146 92-173 (203)
118 3gyz_A Chaperone protein IPGC; 56.9 35 0.0012 24.5 6.6 34 71-104 75-109 (151)
119 2hr2_A Hypothetical protein; a 56.8 44 0.0015 25.3 7.4 30 69-98 14-43 (159)
120 1a17_A Serine/threonine protei 55.4 43 0.0015 22.2 8.3 79 18-98 22-113 (166)
121 2e2e_A Formate-dependent nitri 54.6 50 0.0017 22.8 7.4 28 71-98 83-113 (177)
122 2c2l_A CHIP, carboxy terminus 53.7 40 0.0014 26.1 6.9 81 18-98 13-104 (281)
123 3bee_A Putative YFRE protein; 53.7 30 0.001 23.2 5.4 31 71-102 48-78 (93)
124 3u3w_A Transcriptional activat 53.1 61 0.0021 24.7 7.8 65 68-146 157-222 (293)
125 2fo7_A Synthetic consensus TPR 52.8 39 0.0013 21.0 6.4 75 22-98 16-101 (136)
126 3n71_A Histone lysine methyltr 52.0 47 0.0016 29.1 7.7 33 125-157 440-472 (490)
127 3u3w_A Transcriptional activat 51.1 79 0.0027 24.1 9.4 57 40-96 157-226 (293)
128 3mv2_B Coatomer subunit epsilo 50.9 28 0.00096 29.2 5.8 73 24-97 153-242 (310)
129 4gcn_A Protein STI-1; structur 49.3 57 0.002 21.9 7.0 28 76-103 93-120 (127)
130 1hh8_A P67PHOX, NCF-2, neutrop 48.8 67 0.0023 22.6 8.9 75 52-148 25-99 (213)
131 1kt0_A FKBP51, 51 kDa FK506-bi 48.8 60 0.002 27.3 7.6 28 71-98 322-349 (457)
132 4b4t_Q 26S proteasome regulato 48.8 97 0.0033 24.4 8.9 94 52-149 61-164 (434)
133 4ga2_A E3 SUMO-protein ligase 48.3 25 0.00086 24.5 4.5 72 71-142 36-121 (150)
134 1wao_1 Serine/threonine protei 47.8 66 0.0023 27.4 7.8 29 70-98 44-72 (477)
135 4g1t_A Interferon-induced prot 46.0 88 0.003 25.0 7.9 28 72-99 253-280 (472)
136 2h6f_A Protein farnesyltransfe 45.8 74 0.0025 26.5 7.7 70 76-146 141-226 (382)
137 3rkv_A Putative peptidylprolyl 44.1 74 0.0025 21.7 8.7 32 67-98 64-95 (162)
138 2vsy_A XCC0866; transferase, g 42.6 72 0.0025 27.0 7.2 82 67-148 24-119 (568)
139 2qfc_A PLCR protein; TPR, HTH, 42.2 84 0.0029 23.9 7.0 66 66-145 155-221 (293)
140 2e2e_A Formate-dependent nitri 41.5 84 0.0029 21.6 7.6 22 127-148 122-143 (177)
141 3upv_A Heat shock protein STI1 40.3 73 0.0025 20.6 9.0 30 69-98 41-70 (126)
142 4gco_A Protein STI-1; structur 39.4 86 0.0029 21.1 8.4 28 71-98 52-79 (126)
143 1p5q_A FKBP52, FK506-binding p 37.9 60 0.0021 26.0 5.7 17 129-145 239-255 (336)
144 3q49_B STIP1 homology and U bo 37.7 81 0.0028 20.3 6.2 21 76-96 53-73 (137)
145 1na3_A Designed protein CTPR2; 37.4 64 0.0022 19.1 7.8 60 67-147 10-70 (91)
146 2l6j_A TPR repeat-containing p 35.2 78 0.0027 19.4 5.3 32 68-99 40-71 (111)
147 2kck_A TPR repeat; tetratricop 34.2 78 0.0027 19.1 4.9 82 18-99 15-110 (112)
148 2ond_A Cleavage stimulation fa 33.7 1.6E+02 0.0055 22.5 12.2 124 24-148 81-231 (308)
149 2h6f_A Protein farnesyltransfe 33.1 1.3E+02 0.0044 25.0 7.2 59 52-110 295-364 (382)
150 1elw_A TPR1-domain of HOP; HOP 33.0 83 0.0029 19.1 5.9 28 71-98 77-104 (118)
151 3mkq_B Coatomer subunit alpha; 32.9 1.1E+02 0.0038 23.7 6.3 49 37-96 7-64 (177)
152 1ihg_A Cyclophilin 40; ppiase 32.2 2.1E+02 0.0071 23.4 8.7 22 127-148 314-335 (370)
153 1hxi_A PEX5, peroxisome target 31.8 1.1E+02 0.0039 20.2 7.1 25 74-98 59-83 (121)
154 1b89_A Protein (clathrin heavy 31.2 8.3 0.00028 34.4 -0.6 23 70-92 126-148 (449)
155 1ouv_A Conserved hypothetical 30.8 1.6E+02 0.0055 21.6 9.5 27 24-50 23-50 (273)
156 2fbn_A 70 kDa peptidylprolyl i 30.4 1.4E+02 0.0048 21.0 6.2 29 71-99 127-155 (198)
157 4f3v_A ESX-1 secretion system 30.2 2.3E+02 0.0077 23.2 9.4 111 38-148 102-236 (282)
158 3o48_A Mitochondria fission 1 29.8 88 0.003 23.5 5.1 29 71-99 83-111 (134)
159 1y8m_A FIS1; mitochondria, unk 28.3 75 0.0025 24.2 4.5 58 35-99 36-110 (144)
160 2kat_A Uncharacterized protein 28.3 1.1E+02 0.0036 19.5 4.8 61 37-99 18-86 (115)
161 3k9i_A BH0479 protein; putativ 28.2 1.2E+02 0.0042 19.5 5.9 29 71-99 66-94 (117)
162 2if4_A ATFKBP42; FKBP-like, al 28.0 43 0.0015 26.9 3.3 22 126-147 270-291 (338)
163 2lni_A Stress-induced-phosphop 27.9 1.1E+02 0.0039 19.0 7.5 24 74-97 92-115 (133)
164 3sz7_A HSC70 cochaperone (SGT) 27.5 1.5E+02 0.005 20.2 7.9 27 72-98 85-111 (164)
165 1xi4_A Clathrin heavy chain; a 27.5 2.8E+02 0.0097 28.8 9.6 49 52-104 1124-1174(1630)
166 1bde_A VPR protein; AIDS, HIV, 26.8 37 0.0013 20.2 1.9 17 100-117 4-20 (35)
167 2qfc_A PLCR protein; TPR, HTH, 25.8 2.2E+02 0.0074 21.5 11.0 59 38-96 155-226 (293)
168 1na0_A Designed protein CTPR3; 25.8 1.2E+02 0.004 18.5 5.9 26 72-97 83-108 (125)
169 4g1t_A Interferon-induced prot 25.4 2.5E+02 0.0087 22.2 8.5 21 127-147 437-457 (472)
170 2pzi_A Probable serine/threoni 25.0 1.1E+02 0.0037 27.2 5.6 80 67-147 434-527 (681)
171 3msv_A Nuclear import adaptor, 24.9 68 0.0023 28.0 4.0 31 48-78 68-101 (393)
172 1ihg_A Cyclophilin 40; ppiase 24.1 2.9E+02 0.01 22.5 9.9 30 69-98 276-305 (370)
173 1ouv_A Conserved hypothetical 23.5 2.2E+02 0.0075 20.8 9.0 27 24-50 59-86 (273)
174 1kt0_A FKBP51, 51 kDa FK506-bi 23.1 2.3E+02 0.0079 23.6 7.1 18 129-146 360-377 (457)
175 1vib_A Neurotoxin B-IV; hydrox 22.5 30 0.001 22.1 1.1 13 100-112 28-40 (55)
176 2cwy_A Hypothetical protein TT 22.1 85 0.0029 21.7 3.5 41 75-115 10-52 (94)
177 2kc7_A BFR218_protein; tetratr 21.6 1.5E+02 0.005 18.1 6.7 32 68-99 37-68 (99)
178 3bqo_A Telomeric repeat-bindin 21.5 61 0.0021 26.4 2.9 19 128-146 122-143 (211)
179 4i17_A Hypothetical protein; T 21.0 2.3E+02 0.0078 20.1 9.6 27 72-98 123-149 (228)
180 2ond_A Cleavage stimulation fa 20.9 2.8E+02 0.0096 21.1 11.5 122 25-146 34-195 (308)
181 2kbv_A Sodium/hydrogen exchang 20.8 23 0.00079 20.0 0.2 12 100-111 7-18 (28)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=93.99 E-value=0.94 Score=38.03 Aligned_cols=74 Identities=14% Similarity=0.033 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhh---------HhhHHHHHHHHHhccccccch-----hHHHHHhcCHHH
Q psy12002 74 NESYRRAKFWFAFKAFDMLERLEPL-AEYWEGK---------RGACAGLMQMIMAGKENRLNV-----PWAKCALGQYKE 138 (164)
Q Consensus 74 ndcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gk---------rga~ag~F~~~~~~~e~~Dnf-----~qa~a~~g~~kE 138 (164)
..+++.|++-.|.+.|+..-+++|. ++.|..+ -.-+..+|...+.. .|++.. ..++...|++++
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL-FQGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TTTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCCHHH
Confidence 3455567777777777665555543 3444421 11222333332221 122211 225555577777
Q ss_pred HHHHHHHhhc
Q psy12002 139 AEEMFLLVQN 148 (164)
Q Consensus 139 AEe~~l~Iq~ 148 (164)
|++.|..+..
T Consensus 460 A~~~~~~~~~ 469 (597)
T 2xpi_A 460 ANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666544
No 2
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=93.84 E-value=0.28 Score=36.16 Aligned_cols=20 Identities=30% Similarity=0.205 Sum_probs=14.3
Q ss_pred hHHHHHhcCHHHHHHHHHHh
Q psy12002 127 PWAKCALGQYKEAEEMFLLV 146 (164)
Q Consensus 127 ~qa~a~~g~~kEAEe~~l~I 146 (164)
+.++..+|++++|.+.|...
T Consensus 111 g~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44667778888887777654
No 3
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=93.55 E-value=0.48 Score=37.87 Aligned_cols=118 Identities=13% Similarity=0.069 Sum_probs=67.9
Q ss_pred chhhhhcccccc-----cchhhhHHHHHHHHHH-----HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002 24 EGALQVLPPLID-----VIPESRLNLVIYHLKQ-----AWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLE 93 (164)
Q Consensus 24 ~~Al~vLp~L~~-----~~pear~NLvi~~l~~-----Aw~lyl~~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le 93 (164)
+.|++++..++. ..|.+.+++..-+... |...|-+ .++.++.. ..+.-..++|.+-.|.+.|+-+-
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~~---~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GDSLECMA---MTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHHH---HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHHH---HHHHHHHHCCCHHHHHHHHHHHH
Confidence 778888877653 2466777776655554 6666665 33333332 23344556788888888888877
Q ss_pred hcCCCcc------chh------hhHhhHHHHHHHHHhccccccch-----hHHHHHhcCHHHHHHHHHHh
Q psy12002 94 RLEPLAE------YWE------GKRGACAGLMQMIMAGKENRLNV-----PWAKCALGQYKEAEEMFLLV 146 (164)
Q Consensus 94 ~lD~~pe------~~~------Gkrga~ag~F~~~~~~~e~~Dnf-----~qa~a~~g~~kEAEe~~l~I 146 (164)
+.+|+.- -|- |+-.-...+|..++.. .|++.. +.++...|+++||++.|..+
T Consensus 158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7776541 111 3333444555554443 222211 22555668888888887764
No 4
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=93.40 E-value=1.6 Score=32.99 Aligned_cols=84 Identities=13% Similarity=0.164 Sum_probs=51.9
Q ss_pred hhccCc--chhhhhcccccccc------hhhhHHHHHHHHHH--------HHHHHHhcCCch-hHHHHHHHHHHHHHH--
Q psy12002 18 VVFRGG--EGALQVLPPLIDVI------PESRLNLVIYHLKQ--------AWDLYLTMDTSP-ESLQILQLIANESYR-- 78 (164)
Q Consensus 18 ~vFr~G--~~Al~vLp~L~~~~------pear~NLvi~~l~~--------Aw~lyl~~e~~~-eaf~LLq~IandcY~-- 78 (164)
..|+.| +.|...+..+++.. |++..+|..-+.+. .++-.++..+.+ ..-..+-.++...+.
T Consensus 24 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~ 103 (261)
T 3qky_A 24 EFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLS 103 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhc
Confidence 455544 77888887777753 55666665554443 334444443322 333334445555666
Q ss_pred ------HHHHHHHHHHHHHHHhcCCCccc
Q psy12002 79 ------RAKFWFAFKAFDMLERLEPLAEY 101 (164)
Q Consensus 79 ------~~~f~yA~kaFd~le~lD~~pe~ 101 (164)
.|++--|.+.|+.+-+.+|+..+
T Consensus 104 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 132 (261)
T 3qky_A 104 PPYELDQTDTRKAIEAFQLFIDRYPNHEL 132 (261)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHHCTTCTT
T ss_pred ccccccchhHHHHHHHHHHHHHHCcCchh
Confidence 89999999999988788876543
No 5
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=93.19 E-value=1.9 Score=32.32 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=76.0
Q ss_pred hhccCc--chhhhhccccccc---chhhhHHHHHHHHHH-----HHHHHHh---cCCch-hHHHHHHHHHHHHHHH----
Q psy12002 18 VVFRGG--EGALQVLPPLIDV---IPESRLNLVIYHLKQ-----AWDLYLT---MDTSP-ESLQILQLIANESYRR---- 79 (164)
Q Consensus 18 ~vFr~G--~~Al~vLp~L~~~---~pear~NLvi~~l~~-----Aw~lyl~---~e~~~-eaf~LLq~IandcY~~---- 79 (164)
+.++.| +.|+..+-..+.. .|++..||...+.+. |...|.+ .++.. ++. ..++......
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~---~~lg~~~~~~~~~~ 90 (217)
T 2pl2_A 14 QLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGY---MVLSEAYVALYRQA 90 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH---HHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH---HHHHHHHHHhhhhh
Confidence 445544 5677766666654 466777777666554 4444332 23222 222 2334445667
Q ss_pred -------HHHHHHHHHHHHHHhcCCC-ccchh---------hhHhhHHHHHHHHHhccccc---cchhHHHHHhcCHHHH
Q psy12002 80 -------AKFWFAFKAFDMLERLEPL-AEYWE---------GKRGACAGLMQMIMAGKENR---LNVPWAKCALGQYKEA 139 (164)
Q Consensus 80 -------~~f~yA~kaFd~le~lD~~-pe~~~---------Gkrga~ag~F~~~~~~~e~~---Dnf~qa~a~~g~~kEA 139 (164)
|++-.|.+.|+-.-+++|+ ++.|- |+..-...+|...+.-.++. .+++.++...|+++||
T Consensus 91 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A 170 (217)
T 2pl2_A 91 EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEA 170 (217)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred hhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHH
Confidence 9999999999988788876 45554 33334455555554433111 1224477788999999
Q ss_pred HHHHHHhhc
Q psy12002 140 EEMFLLVQN 148 (164)
Q Consensus 140 Ee~~l~Iq~ 148 (164)
.+.+...-.
T Consensus 171 ~~~~~~al~ 179 (217)
T 2pl2_A 171 LAQYAKALE 179 (217)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988877643
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=93.00 E-value=1.6 Score=36.69 Aligned_cols=25 Identities=8% Similarity=-0.040 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Q psy12002 73 ANESYRRAKFWFAFKAFDMLERLEP 97 (164)
Q Consensus 73 andcY~~~~f~yA~kaFd~le~lD~ 97 (164)
+..|...|++-.|.+.|+.+-..+|
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3445555666666666655444444
No 7
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=92.94 E-value=1 Score=31.32 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=14.9
Q ss_pred hHHHHHhcCHHHHHHHHHHhh
Q psy12002 127 PWAKCALGQYKEAEEMFLLVQ 147 (164)
Q Consensus 127 ~qa~a~~g~~kEAEe~~l~Iq 147 (164)
+.++..+|++.+|.+.|...-
T Consensus 93 g~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 446677788888887776543
No 8
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=91.92 E-value=2.7 Score=31.73 Aligned_cols=19 Identities=16% Similarity=0.375 Sum_probs=10.2
Q ss_pred HHHHhcCHHHHHHHHHHhh
Q psy12002 129 AKCALGQYKEAEEMFLLVQ 147 (164)
Q Consensus 129 a~a~~g~~kEAEe~~l~Iq 147 (164)
++...|++++|.+.+...-
T Consensus 279 ~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 279 IHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHTCHHHHHHHHHTTT
T ss_pred HHHHhccHHHHHHHHHHHH
Confidence 4444466666655555443
No 9
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=91.85 E-value=1.5 Score=31.19 Aligned_cols=53 Identities=11% Similarity=0.142 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhhHhhHHHHHHHHHhccccccchhHHHHHhcCHHHHHHHHHHh
Q psy12002 73 ANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLLV 146 (164)
Q Consensus 73 andcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~a~~g~~kEAEe~~l~I 146 (164)
+..++..|++-.|.++|+..-.+||+ |+.| .+++.++...|++.+|++.|...
T Consensus 62 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~---------------------~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFP---------------------FHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH---------------------HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCCchHH---------------------HHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445566666666666655555543 1111 12344666778888887777654
No 10
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=91.58 E-value=3.4 Score=31.11 Aligned_cols=114 Identities=10% Similarity=0.127 Sum_probs=72.9
Q ss_pred ccchhhhHHHHHHHHHH-----HHHHHHh---cCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cch--
Q psy12002 35 DVIPESRLNLVIYHLKQ-----AWDLYLT---MDTSP-ESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLA-EYW-- 102 (164)
Q Consensus 35 ~~~pear~NLvi~~l~~-----Aw~lyl~---~e~~~-eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~p-e~~-- 102 (164)
...|++.+++..-+.+. |..+|.+ ..+.+ ..-..+-.++...+.+|++--|.+.|+-+-+++|+. ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 35677888888777666 5555444 34333 235556677888899999999999999988887743 221
Q ss_pred ------------------hhhHhhHHHHHHHHHhccccc---------------------cchhHHHHHhcCHHHHHHHH
Q psy12002 103 ------------------EGKRGACAGLMQMIMAGKENR---------------------LNVPWAKCALGQYKEAEEMF 143 (164)
Q Consensus 103 ------------------~Gkrga~ag~F~~~~~~~e~~---------------------Dnf~qa~a~~g~~kEAEe~~ 143 (164)
.|+-.-....|..++....+. ...+.++...|+|++|.+.|
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 333334445555544433211 12244566669999999998
Q ss_pred HHhhc
Q psy12002 144 LLVQN 148 (164)
Q Consensus 144 l~Iq~ 148 (164)
..+-+
T Consensus 172 ~~~l~ 176 (261)
T 3qky_A 172 EAVFD 176 (261)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87644
No 11
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=91.37 E-value=1.4 Score=32.93 Aligned_cols=111 Identities=14% Similarity=0.044 Sum_probs=65.6
Q ss_pred chhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchh----
Q psy12002 37 IPESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWE---- 103 (164)
Q Consensus 37 ~pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~---- 103 (164)
.|++.+++...+.+. |...|.+ .++.. -..+..++..++..|++-.|.+.|+-.-++||+ ++.|-
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQD--PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 355667776655544 4444443 23222 223345566678899999999999988788875 34443
Q ss_pred ----------------hhHhhHHHHHHHHHhcccccc-----chhHHHHHhcCHHHHHHHHHHhhccc
Q psy12002 104 ----------------GKRGACAGLMQMIMAGKENRL-----NVPWAKCALGQYKEAEEMFLLVQNEG 150 (164)
Q Consensus 104 ----------------Gkrga~ag~F~~~~~~~e~~D-----nf~qa~a~~g~~kEAEe~~l~Iq~~~ 150 (164)
|+-.-...+|...+.-. |.+ +++.++...|++++|++.|...-.-.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 22222333344333221 222 22447778899999999988765544
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=91.14 E-value=3.3 Score=33.15 Aligned_cols=75 Identities=21% Similarity=0.162 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-ccchh-------------hhHhhHHHHHHHHHhcccccc-----chhHHHHHh
Q psy12002 73 ANESYRRAKFWFAFKAFDMLERLEPL-AEYWE-------------GKRGACAGLMQMIMAGKENRL-----NVPWAKCAL 133 (164)
Q Consensus 73 andcY~~~~f~yA~kaFd~le~lD~~-pe~~~-------------Gkrga~ag~F~~~~~~~e~~D-----nf~qa~a~~ 133 (164)
+..|+..|++-.|.+.|+-.-..+|+ ++++. |+-.-+...+...+.- .|.+ ++..++...
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~ 342 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDRAEAYLIE 342 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHh
Confidence 77788888888888888887677765 33222 1111222222222221 1211 123466677
Q ss_pred cCHHHHHHHHHHhhc
Q psy12002 134 GQYKEAEEMFLLVQN 148 (164)
Q Consensus 134 g~~kEAEe~~l~Iq~ 148 (164)
|++++|.+.+...-.
T Consensus 343 ~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 343 EMYDEAIQDYETAQE 357 (450)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999888887654
No 13
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=90.40 E-value=3.7 Score=30.12 Aligned_cols=27 Identities=22% Similarity=0.007 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEP 97 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~ 97 (164)
.++..++..|++-.|.+.|...-+.+|
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (252)
T 2ho1_A 146 NLGLVSLQMKKPAQAKEYFEKSLRLNR 172 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 334444556666666666655544444
No 14
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=90.05 E-value=4.7 Score=30.05 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCccc-hh--------------------------hhHhhHHHHHHHHHhcccccc-------
Q psy12002 79 RAKFWFAFKAFDMLERLEPLAEY-WE--------------------------GKRGACAGLMQMIMAGKENRL------- 124 (164)
Q Consensus 79 ~~~f~yA~kaFd~le~lD~~pe~-~~--------------------------Gkrga~ag~F~~~~~~~e~~D------- 124 (164)
.|++--|.+.|+.+-+.+|+..+ |. |+-..++..|..++....+..
T Consensus 109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 188 (225)
T 2yhc_A 109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALP 188 (225)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHH
Confidence 57888888999888788877543 22 222234444444443321111
Q ss_pred chhHHHHHhcCHHHHHHHHHHhhcc
Q psy12002 125 NVPWAKCALGQYKEAEEMFLLVQNE 149 (164)
Q Consensus 125 nf~qa~a~~g~~kEAEe~~l~Iq~~ 149 (164)
....++..+|++.+|.+.+..+...
T Consensus 189 ~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 189 LMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 1244777779999999988877654
No 15
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=89.11 E-value=1.8 Score=30.41 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=14.9
Q ss_pred hHHHHHhcCHHHHHHHHHHhh
Q psy12002 127 PWAKCALGQYKEAEEMFLLVQ 147 (164)
Q Consensus 127 ~qa~a~~g~~kEAEe~~l~Iq 147 (164)
..++..+|++++|.+.|...-
T Consensus 86 g~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHH
Confidence 446667788888888776554
No 16
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=89.00 E-value=5.3 Score=29.21 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=16.3
Q ss_pred hHHHHHhcCHHHHHHHHHHhhc
Q psy12002 127 PWAKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 127 ~qa~a~~g~~kEAEe~~l~Iq~ 148 (164)
+.+....|++++|++.+...-.
T Consensus 124 g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 124 GQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTT
T ss_pred hHHHHHhccHHHHHHHHHHHHh
Confidence 3466677999999888876654
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=88.96 E-value=5.3 Score=30.87 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 76 SYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 76 cY~~~~f~yA~kaFd~le~lD~~ 98 (164)
++..|++-.|.+.|...-+.+|+
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~ 213 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPT 213 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HhhcccHHHHHHHHHHHHHhCcC
Confidence 44566666666666665555554
No 18
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=88.88 E-value=1.8 Score=34.08 Aligned_cols=78 Identities=13% Similarity=0.010 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhHhh----------HHHHHHHHHhcccc----ccchhHHHHHhcCH
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGA----------CAGLMQMIMAGKEN----RLNVPWAKCALGQY 136 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~pe~~~Gkrga----------~ag~F~~~~~~~e~----~Dnf~qa~a~~g~~ 136 (164)
..+......|++-.|.+.++-+-..+|++.++.-..+. .+..+...+....+ ..+++.++...|++
T Consensus 156 ~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~ 235 (287)
T 3qou_A 156 LLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRN 235 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccH
Confidence 44555667899999999999888888877655432221 22334433332211 12234477777999
Q ss_pred HHHHHHHHHhhc
Q psy12002 137 KEAEEMFLLVQN 148 (164)
Q Consensus 137 kEAEe~~l~Iq~ 148 (164)
.||++.|..+-.
T Consensus 236 ~~A~~~l~~~l~ 247 (287)
T 3qou_A 236 EEALELLFGHLR 247 (287)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999888876543
No 19
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=88.70 E-value=4.8 Score=28.30 Aligned_cols=114 Identities=13% Similarity=0.155 Sum_probs=66.4
Q ss_pred chhhhhcccccccc---hhhhHHHHHHHHHHHHHHHHhcCCchhHHHHHH--------------HHHHHHHHHHHHHHHH
Q psy12002 24 EGALQVLPPLIDVI---PESRLNLVIYHLKQAWDLYLTMDTSPESLQILQ--------------LIANESYRRAKFWFAF 86 (164)
Q Consensus 24 ~~Al~vLp~L~~~~---pear~NLvi~~l~~Aw~lyl~~e~~~eaf~LLq--------------~IandcY~~~~f~yA~ 86 (164)
+.|++.+...++.. +++..+|..-+. +++..++|...++ ..+..+...+++..|.
T Consensus 22 ~~A~~~~~~al~~~p~~~~~~~~la~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 93 (184)
T 3vtx_A 22 DGAIRAYKKVLKADPNNVETLLKLGKTYM--------DIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAI 93 (184)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHH
Confidence 67777777666644 456666655443 3333333333333 3455567788888899
Q ss_pred HHHHHHHhcCCCc-cchhh---------hHhhHHHHHHHHHhcccccc-----chhHHHHHhcCHHHHHHHHHHh
Q psy12002 87 KAFDMLERLEPLA-EYWEG---------KRGACAGLMQMIMAGKENRL-----NVPWAKCALGQYKEAEEMFLLV 146 (164)
Q Consensus 87 kaFd~le~lD~~p-e~~~G---------krga~ag~F~~~~~~~e~~D-----nf~qa~a~~g~~kEAEe~~l~I 146 (164)
+.+...-.++|+. +.|.. +-.-...+|..++.-. |.+ +++.++...|++++|.+.|...
T Consensus 94 ~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 94 DALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9888877777763 44432 1222334444433322 211 2244777789999999988754
No 20
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=88.64 E-value=2.1 Score=29.62 Aligned_cols=79 Identities=9% Similarity=0.098 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhh---------HhhHHHHHHHHHhccc-c---ccchhHHHHHhc
Q psy12002 69 LQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGK---------RGACAGLMQMIMAGKE-N---RLNVPWAKCALG 134 (164)
Q Consensus 69 Lq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gk---------rga~ag~F~~~~~~~e-~---~Dnf~qa~a~~g 134 (164)
.+...+..|+.|+|-.|.+.|+-.=++||. ++.|-.+ -.-+...|..++.-.. + -.+.+.++..+|
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCC
Confidence 334455666666666666666654455543 4444421 1112222222222111 0 112244777789
Q ss_pred CHHHHHHHHHHhh
Q psy12002 135 QYKEAEEMFLLVQ 147 (164)
Q Consensus 135 ~~kEAEe~~l~Iq 147 (164)
++++|.+.|...-
T Consensus 96 ~~~~A~~~~~~al 108 (126)
T 4gco_A 96 EWSKAQRAYEDAL 108 (126)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999988887654
No 21
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=88.56 E-value=2.3 Score=34.11 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=8.1
Q ss_pred HHHhcCHHHHHHHHHHh
Q psy12002 130 KCALGQYKEAEEMFLLV 146 (164)
Q Consensus 130 ~a~~g~~kEAEe~~l~I 146 (164)
+...|++++|.+.|..+
T Consensus 267 ~~~~g~~~~A~~~~~~~ 283 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESV 283 (450)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 33345555555554443
No 22
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=88.24 E-value=4.8 Score=29.77 Aligned_cols=132 Identities=11% Similarity=0.039 Sum_probs=71.3
Q ss_pred hhhhhhhhhccCc--chhhhhcccccccchh---hhHHH----------HHHHHHHHHHHHHhcCCchhHHHHHH-----
Q psy12002 11 DLIKHNLVVFRGG--EGALQVLPPLIDVIPE---SRLNL----------VIYHLKQAWDLYLTMDTSPESLQILQ----- 70 (164)
Q Consensus 11 dli~hNl~vFr~G--~~Al~vLp~L~~~~pe---ar~NL----------vi~~l~~Aw~lyl~~e~~~eaf~LLq----- 70 (164)
+++..=...++.| +.|++.+...+...|. +.+++ .+. .+.-..|.+++..++|...++
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~--~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLA--TELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3333334555655 6777777777776553 33330 000 012234455555555555444
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhhHhhH------------HHHHHHHHhccccccch--
Q psy12002 71 ---------LIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGKRGAC------------AGLMQMIMAGKENRLNV-- 126 (164)
Q Consensus 71 ---------~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gkrga~------------ag~F~~~~~~~e~~Dnf-- 126 (164)
.++...+..|++--|.+.|+-+-++||+ ++.|-. .|-+ ...|..++ ..++..+
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~-lg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~ 160 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIF-LGNYYYLTAEQEKKKLETDYKKLS--SPTKMQYAR 160 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHh--CCCchhHHH
Confidence 3445566799999999999998888886 454443 2111 11111111 0111111
Q ss_pred ---hHHHHHhcCHHHHHHHHHHhh
Q psy12002 127 ---PWAKCALGQYKEAEEMFLLVQ 147 (164)
Q Consensus 127 ---~qa~a~~g~~kEAEe~~l~Iq 147 (164)
+.+....|+|++|.+.|...-
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Confidence 225566799999999987654
No 23
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=87.60 E-value=3.6 Score=33.71 Aligned_cols=19 Identities=26% Similarity=0.174 Sum_probs=11.3
Q ss_pred HHHHHhcCHHHHHHHHHHh
Q psy12002 128 WAKCALGQYKEAEEMFLLV 146 (164)
Q Consensus 128 qa~a~~g~~kEAEe~~l~I 146 (164)
+++...|++++|.+.|...
T Consensus 470 ~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHH
Confidence 3555556777666665544
No 24
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=87.47 E-value=4.4 Score=26.50 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhHhhHHHHHHHHHhccccccchhHHHHHhcCHHHHHHHHHHhh
Q psy12002 68 ILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLLVQ 147 (164)
Q Consensus 68 LLq~IandcY~~~~f~yA~kaFd~le~lD~~pe~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~a~~g~~kEAEe~~l~Iq 147 (164)
.+-.++...+..|++-.|.+.|+-+-+.+|+....+. +. ..++.++...|++++|.+.|..+-
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~-------~~----------~~la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAG-------GL----------LKLGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHH-------HH----------HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHH-------HH----------HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334555566677777777777776666655422111 00 112445555677777777766554
No 25
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=87.37 E-value=4.5 Score=26.80 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhh---------HhhHHHHHHHHHhcccc----ccchhHHHHHhcC
Q psy12002 70 QLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGK---------RGACAGLMQMIMAGKEN----RLNVPWAKCALGQ 135 (164)
Q Consensus 70 q~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gk---------rga~ag~F~~~~~~~e~----~Dnf~qa~a~~g~ 135 (164)
...++.++..|++-.|.+.|...-+++|+ ++.|-++ -.-+...|..++.-..+ -.+++.++...|+
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhC
Confidence 34455556666666666666655455543 3333321 11122222222221110 0112446677799
Q ss_pred HHHHHHHHHHhh
Q psy12002 136 YKEAEEMFLLVQ 147 (164)
Q Consensus 136 ~kEAEe~~l~Iq 147 (164)
+++|.+.|...-
T Consensus 88 ~~~A~~~~~~al 99 (126)
T 3upv_A 88 YASALETLDAAR 99 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988876543
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=87.29 E-value=5 Score=31.35 Aligned_cols=23 Identities=0% Similarity=-0.291 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 76 SYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 76 cY~~~~f~yA~kaFd~le~lD~~ 98 (164)
+...|++-.|.+.|+-.-+++|+
T Consensus 187 ~~~~g~~~~A~~~~~~al~~~p~ 209 (365)
T 4eqf_A 187 PVDSSVLEGVKELYLEAAHQNGD 209 (365)
T ss_dssp --CCHHHHHHHHHHHHHHHHSCS
T ss_pred HhhhhhHHHHHHHHHHHHHhCcC
Confidence 33356666666666665555554
No 27
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=87.15 E-value=8.1 Score=29.21 Aligned_cols=77 Identities=19% Similarity=0.155 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc-cchh-------------hhHhhHHHHHHHHHhccc-ccc---chhHHHHHhc
Q psy12002 73 ANESYRRAKFWFAFKAFDMLERLEPLA-EYWE-------------GKRGACAGLMQMIMAGKE-NRL---NVPWAKCALG 134 (164)
Q Consensus 73 andcY~~~~f~yA~kaFd~le~lD~~p-e~~~-------------Gkrga~ag~F~~~~~~~e-~~D---nf~qa~a~~g 134 (164)
+...+..|++-.|.+.|+..-..+|+. +.|. |+-.-...+|..++.... +.+ .++.++...|
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 320 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEE 320 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence 555666777777777777766666553 2221 111122223332222111 111 1133666668
Q ss_pred CHHHHHHHHHHhhcc
Q psy12002 135 QYKEAEEMFLLVQNE 149 (164)
Q Consensus 135 ~~kEAEe~~l~Iq~~ 149 (164)
++++|.+.|...-.-
T Consensus 321 ~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 321 MYDEAIQDYEAAQEH 335 (359)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhc
Confidence 888887777766543
No 28
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=86.83 E-value=2.1 Score=28.47 Aligned_cols=80 Identities=14% Similarity=0.100 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhh---------HhhHHHHHHHHHhcccc----ccchhHHHHHh
Q psy12002 68 ILQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGK---------RGACAGLMQMIMAGKEN----RLNVPWAKCAL 133 (164)
Q Consensus 68 LLq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gk---------rga~ag~F~~~~~~~e~----~Dnf~qa~a~~ 133 (164)
.+..++..++..|++-.|.+.|...-+++|+ ++.|-.+ -.-+..+|..++.-..+ -..++.++...
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 90 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 90 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3445555566666666666666655455544 3333321 11122233322221111 11234466777
Q ss_pred cCHHHHHHHHHHhh
Q psy12002 134 GQYKEAEEMFLLVQ 147 (164)
Q Consensus 134 g~~kEAEe~~l~Iq 147 (164)
|++++|.+.|...-
T Consensus 91 ~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 91 ESYDEAIANLQRAY 104 (137)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 99999988876543
No 29
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=86.60 E-value=5.3 Score=34.98 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=30.5
Q ss_pred HHHHHhcCCchhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12002 53 WDLYLTMDTSPESLQIL---------QLIANESYRRAKFWFAFKAFDMLERLE 96 (164)
Q Consensus 53 w~lyl~~e~~~eaf~LL---------q~IandcY~~~~f~yA~kaFd~le~lD 96 (164)
+++.++.++-++|+.+. +.+|..|-+.+++-.|+++|.-++..+
T Consensus 659 f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~ 711 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLE 711 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHH
T ss_pred eehhhhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChh
Confidence 44445555555554444 477888899999999999999876554
No 30
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=86.57 E-value=5.6 Score=28.44 Aligned_cols=80 Identities=14% Similarity=-0.002 Sum_probs=48.0
Q ss_pred hhccCc--chhhhhcccccccchhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002 18 VVFRGG--EGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRRAKFWFAFK 87 (164)
Q Consensus 18 ~vFr~G--~~Al~vLp~L~~~~pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~~~f~yA~k 87 (164)
..++.| +.|+..+...++..|.+..|+...+.+. |...|.+ .++.. ...+-.++...+..|++-.|.+
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~lg~~~~~~~~~~~A~~ 92 (213)
T 1hh8_A 15 LAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL--AVAYFQRGMLYYQTEKYDLAIK 92 (213)
T ss_dssp HHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHcccHHHHHH
Confidence 344444 6677777666666777777777666544 3333332 22211 2233345566677888888888
Q ss_pred HHHHHHhcCCCc
Q psy12002 88 AFDMLERLEPLA 99 (164)
Q Consensus 88 aFd~le~lD~~p 99 (164)
.|+..-+++|..
T Consensus 93 ~~~~al~~~~~~ 104 (213)
T 1hh8_A 93 DLKEALIQLRGN 104 (213)
T ss_dssp HHHHHHHTTTTC
T ss_pred HHHHHHHhCCCc
Confidence 888876666553
No 31
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=86.55 E-value=5.8 Score=31.38 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 75 ESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 75 dcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
..+..|++-.|.+.|+..-+++|+
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~p~ 269 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQPH 269 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC
Confidence 344456666666666655455543
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=86.48 E-value=6 Score=28.55 Aligned_cols=20 Identities=20% Similarity=-0.013 Sum_probs=13.6
Q ss_pred HHHHhcCHHHHHHHHHHhhc
Q psy12002 129 AKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 129 a~a~~g~~kEAEe~~l~Iq~ 148 (164)
++...|++++|.+.+...-.
T Consensus 182 ~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 182 ALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 55556888888777766543
No 33
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=85.26 E-value=3.5 Score=33.35 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhh---------HhhHHHHHHHHHhcccccc-----chhHHHH
Q psy12002 66 LQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGK---------RGACAGLMQMIMAGKENRL-----NVPWAKC 131 (164)
Q Consensus 66 f~LLq~IandcY~~~~f~yA~kaFd~le~lD~~pe~~~Gk---------rga~ag~F~~~~~~~e~~D-----nf~qa~a 131 (164)
-..+...++..+..|++-.|.+.|+-.-..+|+++.|-++ -..+..+|..++.-. |.. ..+.++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 3455667788888888888888888877888877777642 222333444333321 211 1234777
Q ss_pred HhcCHHHHHHHHHHhhcc
Q psy12002 132 ALGQYKEAEEMFLLVQNE 149 (164)
Q Consensus 132 ~~g~~kEAEe~~l~Iq~~ 149 (164)
..|++++|.+.|..+-.-
T Consensus 85 ~~g~~~~A~~~~~~~~~~ 102 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLN 102 (514)
T ss_dssp HTTCHHHHHHHHHHHHHS
T ss_pred HHhhHHHHHHHHHHHHhc
Confidence 889999999998876443
No 34
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=84.93 E-value=3.8 Score=37.96 Aligned_cols=137 Identities=14% Similarity=0.105 Sum_probs=77.0
Q ss_pred cchhhhhhh-h--hhccCc--chhhhhccccccc---chhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHH
Q psy12002 8 DNHDLIKHN-L--VVFRGG--EGALQVLPPLIDV---IPESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQL 71 (164)
Q Consensus 8 ~~~dli~hN-l--~vFr~G--~~Al~vLp~L~~~---~pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~ 71 (164)
.+++.-.+| | +..+.| +.|++.+...++. .+++..||..-+.+. |.+.|.+ .++.. ...+-.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~--~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF--ADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHH
Confidence 344444444 4 444455 5666666655553 467888887665554 4444433 23221 112234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchh---------hhHhhHHHHHHHHHhccc-c---ccchhHHHHHhcCHH
Q psy12002 72 IANESYRRAKFWFAFKAFDMLERLEPL-AEYWE---------GKRGACAGLMQMIMAGKE-N---RLNVPWAKCALGQYK 137 (164)
Q Consensus 72 IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~---------Gkrga~ag~F~~~~~~~e-~---~Dnf~qa~a~~g~~k 137 (164)
+++....+|++-.|.++|+-.-++||+ ++.|- |+-.-...+|...+.-+. . -.++..++..+|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 566677799999999999887777765 34443 222333444444333221 1 112345777889999
Q ss_pred HHHHHHHHh
Q psy12002 138 EAEEMFLLV 146 (164)
Q Consensus 138 EAEe~~l~I 146 (164)
+|++.+...
T Consensus 163 ~A~~~~~ka 171 (723)
T 4gyw_A 163 DYDERMKKL 171 (723)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998876543
No 35
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=84.56 E-value=9.2 Score=27.45 Aligned_cols=20 Identities=15% Similarity=-0.014 Sum_probs=11.9
Q ss_pred HHHHhcCHHHHHHHHHHhhc
Q psy12002 129 AKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 129 a~a~~g~~kEAEe~~l~Iq~ 148 (164)
++...|++++|.+.+..+-.
T Consensus 202 ~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 202 TYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHc
Confidence 44455777777666665543
No 36
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=84.38 E-value=11 Score=28.38 Aligned_cols=72 Identities=13% Similarity=-0.025 Sum_probs=36.3
Q ss_pred chhhhhcccccccc---hhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002 24 EGALQVLPPLIDVI---PESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRRAKFWFAFKAFDML 92 (164)
Q Consensus 24 ~~Al~vLp~L~~~~---pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~l 92 (164)
+.|+..+...++.. |++..++...+... |...|.+ .++.. ...+..++..++..|++-.|.+.|+..
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~ 97 (359)
T 3ieg_A 20 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF--TAARLQRGHLLLKQGKLDEAEDDFKKV 97 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--chHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 55666665555433 44555555544443 3333322 22211 123334455555667777777777666
Q ss_pred HhcCC
Q psy12002 93 ERLEP 97 (164)
Q Consensus 93 e~lD~ 97 (164)
-+++|
T Consensus 98 ~~~~~ 102 (359)
T 3ieg_A 98 LKSNP 102 (359)
T ss_dssp HTSCC
T ss_pred HhcCC
Confidence 66665
No 37
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=84.34 E-value=6.4 Score=28.65 Aligned_cols=35 Identities=17% Similarity=0.010 Sum_probs=21.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12002 60 DTSPESLQILQLIANESYRRAKFWFAFKAFDMLER 94 (164)
Q Consensus 60 e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~ 94 (164)
++.+.....+..++..++..|++-.|.+.|.-.-.
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 113 (283)
T 3edt_B 79 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 113 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33344455555666666677777777777665433
No 38
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=84.28 E-value=5.9 Score=28.19 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=19.8
Q ss_pred hhccCc--chhhhhcccccccc---hhhhHHHHHHHHHH
Q psy12002 18 VVFRGG--EGALQVLPPLIDVI---PESRLNLVIYHLKQ 51 (164)
Q Consensus 18 ~vFr~G--~~Al~vLp~L~~~~---pear~NLvi~~l~~ 51 (164)
..++.| +.|++.+...++.. |++..+|...+.+.
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~ 53 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLET 53 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHC
Confidence 344444 67777777776643 45566666555443
No 39
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=84.12 E-value=11 Score=27.97 Aligned_cols=81 Identities=17% Similarity=0.125 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc------ch-------------------------hhhHhhHHHHHHHH
Q psy12002 68 ILQLIANESYRRAKFWFAFKAFDMLERLEPLAE------YW-------------------------EGKRGACAGLMQMI 116 (164)
Q Consensus 68 LLq~IandcY~~~~f~yA~kaFd~le~lD~~pe------~~-------------------------~Gkrga~ag~F~~~ 116 (164)
.+-.++...|..|++--|.+.|+-+-+.+|+.. ++ .|...-....|..+
T Consensus 43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 122 (225)
T 2yhc_A 43 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKL 122 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHH
Confidence 333455556667777777777777666666532 11 13334455666665
Q ss_pred Hhccccccc---------------------hhHHHHHhcCHHHHHHHHHHhhc
Q psy12002 117 MAGKENRLN---------------------VPWAKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 117 ~~~~e~~Dn---------------------f~qa~a~~g~~kEAEe~~l~Iq~ 148 (164)
+....+... .+..+...|+|.+|.+.|..+-+
T Consensus 123 l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 175 (225)
T 2yhc_A 123 VRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLR 175 (225)
T ss_dssp HTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 554422211 12244556999999888887654
No 40
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=83.80 E-value=6.7 Score=25.27 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=16.3
Q ss_pred hHHHHHhcCHHHHHHHHHHhhc
Q psy12002 127 PWAKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 127 ~qa~a~~g~~kEAEe~~l~Iq~ 148 (164)
+.++...|++++|.+.|...-.
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 4466677999999888876543
No 41
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.50 E-value=6.7 Score=30.59 Aligned_cols=88 Identities=10% Similarity=0.078 Sum_probs=48.8
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccchhhhHhhHHHHHHHHHhccccccchhHHH
Q psy12002 52 AWDLYLTMDTSPESLQILQLIANESYRR-AKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAK 130 (164)
Q Consensus 52 Aw~lyl~~e~~~eaf~LLq~IandcY~~-~~f~yA~kaFd~le~lD~~pe~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~ 130 (164)
|.+++.+.++...+-..+..++...... |++-.|.+.|+-.-.++|.. |.....+.++. +++.++
T Consensus 103 Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~----~~~~~~~~~~~----------~lg~~~ 168 (292)
T 1qqe_A 103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD----QSVALSNKCFI----------KCADLK 168 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHH----------HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC----CChHHHHHHHH----------HHHHHH
Confidence 5555555555555555555555555554 66666666666543433321 11111122222 346688
Q ss_pred HHhcCHHHHHHHHHHhhcccccC
Q psy12002 131 CALGQYKEAEEMFLLVQNEGLKN 153 (164)
Q Consensus 131 a~~g~~kEAEe~~l~Iq~~~~kn 153 (164)
..+|+|++|.+.+..+-.-...+
T Consensus 169 ~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 169 ALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHhCCHHHHHHHHHHHHHHHhcC
Confidence 88899999999988766543333
No 42
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=83.46 E-value=9.4 Score=26.71 Aligned_cols=80 Identities=13% Similarity=0.024 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cchhhh---------HhhHHHHHHHHHhcccc----ccchhHHHHHhc
Q psy12002 69 LQLIANESYRRAKFWFAFKAFDMLERLEPLA-EYWEGK---------RGACAGLMQMIMAGKEN----RLNVPWAKCALG 134 (164)
Q Consensus 69 Lq~IandcY~~~~f~yA~kaFd~le~lD~~p-e~~~Gk---------rga~ag~F~~~~~~~e~----~Dnf~qa~a~~g 134 (164)
+..++...+..|++-.|.+.+......+|+. +.|... -......+...+.-..+ ...++.++...|
T Consensus 42 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g 121 (184)
T 3vtx_A 42 LLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMG 121 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhC
Confidence 3455666777999999999999887877764 333321 11122222222221111 111244777779
Q ss_pred CHHHHHHHHHHhhc
Q psy12002 135 QYKEAEEMFLLVQN 148 (164)
Q Consensus 135 ~~kEAEe~~l~Iq~ 148 (164)
++++|.+.|..+-.
T Consensus 122 ~~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 122 EHDKAIEAYEKTIS 135 (184)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHH
Confidence 99999999876654
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=83.45 E-value=11 Score=27.56 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=17.0
Q ss_pred hHHHHHhcCHHHHHHHHHHhhcc
Q psy12002 127 PWAKCALGQYKEAEEMFLLVQNE 149 (164)
Q Consensus 127 ~qa~a~~g~~kEAEe~~l~Iq~~ 149 (164)
+.++...|++++|.+.|...-.-
T Consensus 222 a~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 222 GKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhC
Confidence 34666779999999888776544
No 44
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=83.27 E-value=15 Score=28.94 Aligned_cols=128 Identities=16% Similarity=0.103 Sum_probs=66.7
Q ss_pred hhccCc--chhhhhcccccccchhhhHHHHHHHHHH-----HHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002 18 VVFRGG--EGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLY---LTMDTSPESLQILQLIANESYRRAKFWFAFK 87 (164)
Q Consensus 18 ~vFr~G--~~Al~vLp~L~~~~pear~NLvi~~l~~-----Aw~ly---l~~e~~~eaf~LLq~IandcY~~~~f~yA~k 87 (164)
...+.| +.|++.+.. ...+++.++++..+.+. |-..+ ++.++.+.-..+.....+-..+.|.+-.|.+
T Consensus 110 ~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~ 187 (291)
T 3mkr_A 110 IYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYY 187 (291)
T ss_dssp HHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence 334444 778888777 56677877776544433 22222 2222222112222222232333588999999
Q ss_pred HHHHHHhcCCC-ccchhh---------hHhhHHHHHHHHHhccc-cccch---hHHHHHhcCHHH-HHHHHHHhh
Q psy12002 88 AFDMLERLEPL-AEYWEG---------KRGACAGLMQMIMAGKE-NRLNV---PWAKCALGQYKE-AEEMFLLVQ 147 (164)
Q Consensus 88 aFd~le~lD~~-pe~~~G---------krga~ag~F~~~~~~~e-~~Dnf---~qa~a~~g~~kE-AEe~~l~Iq 147 (164)
.|+-+-..+|+ ++.|.+ +-.-+...|..++.... +.+.+ ..+....|++.| +++++..+.
T Consensus 188 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 188 IFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99887666554 444443 22233444554444322 22222 235666799876 577775543
No 45
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=82.97 E-value=6.6 Score=33.37 Aligned_cols=120 Identities=14% Similarity=0.013 Sum_probs=72.1
Q ss_pred chhhhhccccccc---chhhhHHHHHHHHHH-----HHHHHH---hcCCchhHHHHHHHHHHHHHHH---------HHHH
Q psy12002 24 EGALQVLPPLIDV---IPESRLNLVIYHLKQ-----AWDLYL---TMDTSPESLQILQLIANESYRR---------AKFW 83 (164)
Q Consensus 24 ~~Al~vLp~L~~~---~pear~NLvi~~l~~-----Aw~lyl---~~e~~~eaf~LLq~IandcY~~---------~~f~ 83 (164)
+.|++.+...++. .+++..||...+.+. |...|. +.++. ...+..++...+.. |++-
T Consensus 120 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~lg~~~~~~~~~~~~~~~g~~~ 196 (474)
T 4abn_A 120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN---KVSLQNLSMVLRQLQTDSGDEHSRHVM 196 (474)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC---HHHHHHHHHHHTTCCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---HHHHHHHHHHHHHhccCChhhhhhhHH
Confidence 5666666655543 456788887777666 444443 34433 25555666666677 9999
Q ss_pred HHHHHHHHHHhcCCC-ccchhhh-----------------HhhHHHHHHHHHhcccc---cc-----chhHHHHHhcCHH
Q psy12002 84 FAFKAFDMLERLEPL-AEYWEGK-----------------RGACAGLMQMIMAGKEN---RL-----NVPWAKCALGQYK 137 (164)
Q Consensus 84 yA~kaFd~le~lD~~-pe~~~Gk-----------------rga~ag~F~~~~~~~e~---~D-----nf~qa~a~~g~~k 137 (164)
.|.+.|.-.-++||+ ++.|-.. -.-+..+|...+.- .| .+ +++.++...|+++
T Consensus 197 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~lg~~~~~~g~~~ 275 (474)
T 4abn_A 197 DSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV-DRKASSNPDLHLNRATLHKYEESYG 275 (474)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-CGGGGGCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh-CCCcccCHHHHHHHHHHHHHcCCHH
Confidence 999999887777776 4555432 22223333333322 12 11 1234667779999
Q ss_pred HHHHHHHHhh
Q psy12002 138 EAEEMFLLVQ 147 (164)
Q Consensus 138 EAEe~~l~Iq 147 (164)
+|.+.|...-
T Consensus 276 ~A~~~~~~al 285 (474)
T 4abn_A 276 EALEGFSQAA 285 (474)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887654
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=82.37 E-value=13 Score=27.40 Aligned_cols=79 Identities=9% Similarity=0.022 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cchhhh--H----------hhHHHHHHHHHhcc--ccccc----------
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPLA-EYWEGK--R----------GACAGLMQMIMAGK--ENRLN---------- 125 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~p-e~~~Gk--r----------ga~ag~F~~~~~~~--e~~Dn---------- 125 (164)
.++..||..+++-.|.+.|...-+++|+. +.|-.+ - .-....|...+.-. .++.+
T Consensus 147 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 226 (272)
T 3u4t_A 147 ELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEY 226 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 45556788888888888888877777663 333221 0 00122233222211 12211
Q ss_pred hhHHHHHhcCHHHHHHHHHHhhcc
Q psy12002 126 VPWAKCALGQYKEAEEMFLLVQNE 149 (164)
Q Consensus 126 f~qa~a~~g~~kEAEe~~l~Iq~~ 149 (164)
++.++...|++++|.+.+..+-.-
T Consensus 227 l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 227 IAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Confidence 234566679999998888776543
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=82.02 E-value=12 Score=26.84 Aligned_cols=124 Identities=16% Similarity=0.079 Sum_probs=63.5
Q ss_pred chhhhhcccccccc---hhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002 24 EGALQVLPPLIDVI---PESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRRAKFWFAFKAFDML 92 (164)
Q Consensus 24 ~~Al~vLp~L~~~~---pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~l 92 (164)
+.|+..+...++.. +++..++...+.+. |...|.+ .++. .......++..++..|++-.|.+.|+-.
T Consensus 40 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~ 117 (243)
T 2q7f_A 40 EKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS--AATAYYGAGNVYVVKEMYKEAKDMFEKA 117 (243)
T ss_dssp --CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--chHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 56666666655543 45555555444333 3333322 2211 1223334566677789999999988887
Q ss_pred HhcCCC-ccchhhh---------HhhHHHHHHHHHhcccc-c---cchhHHHHHhcCHHHHHHHHHHhhcc
Q psy12002 93 ERLEPL-AEYWEGK---------RGACAGLMQMIMAGKEN-R---LNVPWAKCALGQYKEAEEMFLLVQNE 149 (164)
Q Consensus 93 e~lD~~-pe~~~Gk---------rga~ag~F~~~~~~~e~-~---Dnf~qa~a~~g~~kEAEe~~l~Iq~~ 149 (164)
-+.+|. ++.|... -.-....|...+....+ . ..+..++...|++++|.+.+..+-+.
T Consensus 118 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 118 LRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666654 4444321 11122223322221111 1 11234666779999999998776544
No 48
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=81.74 E-value=7.7 Score=30.65 Aligned_cols=9 Identities=11% Similarity=0.110 Sum_probs=3.5
Q ss_pred cCHHHHHHH
Q psy12002 134 GQYKEAEEM 142 (164)
Q Consensus 134 g~~kEAEe~ 142 (164)
|.+.+|.+.
T Consensus 217 ~~~~~A~~~ 225 (388)
T 1w3b_A 217 RIFDRAVAA 225 (388)
T ss_dssp TCTTHHHHH
T ss_pred CCHHHHHHH
Confidence 334444333
No 49
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=81.67 E-value=9.8 Score=25.65 Aligned_cols=125 Identities=12% Similarity=0.110 Sum_probs=65.0
Q ss_pred Ccchhhhhcccccccch---hhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002 22 GGEGALQVLPPLIDVIP---ESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRRAKFWFAFKAFD 90 (164)
Q Consensus 22 ~G~~Al~vLp~L~~~~p---ear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd 90 (164)
+-+.|++.+...++..| .+..++...+... |.+++.+ ..+. ....+..++..++..|++-.|.+.|+
T Consensus 23 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~ 100 (186)
T 3as5_A 23 RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD--NVKVATVLGLTYVQVQKYDLAVPLLI 100 (186)
T ss_dssp CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34678887777776544 4444444333322 2222222 2111 11223344555677889999999888
Q ss_pred HHHhcCCC-ccchhh---------hHhhHHHHHHHHHhcccccc-----chhHHHHHhcCHHHHHHHHHHhhcc
Q psy12002 91 MLERLEPL-AEYWEG---------KRGACAGLMQMIMAGKENRL-----NVPWAKCALGQYKEAEEMFLLVQNE 149 (164)
Q Consensus 91 ~le~lD~~-pe~~~G---------krga~ag~F~~~~~~~e~~D-----nf~qa~a~~g~~kEAEe~~l~Iq~~ 149 (164)
..-+.+|. ++.|-. +-..+..+|...+... |.+ .+..++...|++++|.+.+..+-..
T Consensus 101 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 101 KVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 87666654 344332 1112223333322221 111 1133666679999999888776443
No 50
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.51 E-value=9.1 Score=25.19 Aligned_cols=61 Identities=10% Similarity=-0.154 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cchhhhHhhHHHHHHHHHhccccccchhHHHHHhcCHHHHHHHHH
Q psy12002 66 LQILQLIANESYRRAKFWFAFKAFDMLERLEPLA-EYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFL 144 (164)
Q Consensus 66 f~LLq~IandcY~~~~f~yA~kaFd~le~lD~~p-e~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~a~~g~~kEAEe~~l 144 (164)
..++..++...+..|++-.|.+.|+..-+++|+. +.|- .+..++...|++++|.+.|.
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---------------------~~a~~~~~~~~~~~A~~~~~ 123 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY---------------------RRSQALEKLGRLDQAVLDLQ 123 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH---------------------HHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH---------------------HHHHHHHHcCCHHHHHHHHH
Confidence 4444455555666777777777776655555432 1111 12335555677777777766
Q ss_pred Hhh
Q psy12002 145 LVQ 147 (164)
Q Consensus 145 ~Iq 147 (164)
..-
T Consensus 124 ~al 126 (148)
T 2dba_A 124 RCV 126 (148)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 51
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=81.37 E-value=10 Score=25.88 Aligned_cols=80 Identities=18% Similarity=0.195 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhh---------HhhHHHHHHHHHhcc-cccc----------c
Q psy12002 67 QILQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGK---------RGACAGLMQMIMAGK-ENRL----------N 125 (164)
Q Consensus 67 ~LLq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gk---------rga~ag~F~~~~~~~-e~~D----------n 125 (164)
.-.+-+.+..|+.|+|-.|.+.|+-.-.+||+ ++.|-++ -.-+...|...+.-. ++.. +
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 33455666677777777777777665555554 3444431 011122222222110 1111 1
Q ss_pred hhHHHHHhcCHHHHHHHHHHh
Q psy12002 126 VPWAKCALGQYKEAEEMFLLV 146 (164)
Q Consensus 126 f~qa~a~~g~~kEAEe~~l~I 146 (164)
.+.++...|++++|.+.|...
T Consensus 89 lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 234667779999998887654
No 52
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=80.24 E-value=12 Score=25.91 Aligned_cols=31 Identities=19% Similarity=0.180 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12002 65 SLQILQLIANESYRRAKFWFAFKAFDMLERL 95 (164)
Q Consensus 65 af~LLq~IandcY~~~~f~yA~kaFd~le~l 95 (164)
.-..++..++..|+.|++-.|.+.|.-.-++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~ 40 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTR 40 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556778889999999999999988875555
No 53
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=80.18 E-value=7.8 Score=27.34 Aligned_cols=87 Identities=18% Similarity=0.078 Sum_probs=51.8
Q ss_pred hhccCc--chhhhhccccccc---chhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHH
Q psy12002 18 VVFRGG--EGALQVLPPLIDV---IPESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRRAKFWF 84 (164)
Q Consensus 18 ~vFr~G--~~Al~vLp~L~~~---~pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~~~f~y 84 (164)
+.++.| +.|+..+...+.. .|++..||..-+.+. |...|.+ .++... ..+-.++...+.+|++-.
T Consensus 30 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~lg~~~~~~g~~~~ 107 (148)
T 2vgx_A 30 NQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP--RFPFHAAECLLQXGELAE 107 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHcCCHHH
Confidence 445555 6777777776664 455566665544333 4444433 222221 112234555677999999
Q ss_pred HHHHHHHHHhcCCC-ccchhhhH
Q psy12002 85 AFKAFDMLERLEPL-AEYWEGKR 106 (164)
Q Consensus 85 A~kaFd~le~lD~~-pe~~~Gkr 106 (164)
|.+.|+..-+++|+ |++.+.+.
T Consensus 108 A~~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 108 AESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHHHCcCCCcchHHHH
Confidence 99999987777664 77777654
No 54
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=79.99 E-value=6.3 Score=36.45 Aligned_cols=108 Identities=16% Similarity=0.074 Sum_probs=65.2
Q ss_pred chhhhHHHHHHHHHH-----HHHHHHh---cCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhh--
Q psy12002 37 IPESRLNLVIYHLKQ-----AWDLYLT---MDTS-PESLQILQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEG-- 104 (164)
Q Consensus 37 ~pear~NLvi~~l~~-----Aw~lyl~---~e~~-~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~G-- 104 (164)
.++|-+||..-+.++ |-.+|.+ .++. .++ +-.+++..+..|++-.|.+.|+-.-++||+ ++.|-+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a---~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA---HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH---HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 356777777665554 4444433 2222 122 224566677899999999999987788875 455543
Q ss_pred -------hHhhHHHHHHHHHhccc-cc---cchhHHHHHhcCHHHHHHHHHHhh
Q psy12002 105 -------KRGACAGLMQMIMAGKE-NR---LNVPWAKCALGQYKEAEEMFLLVQ 147 (164)
Q Consensus 105 -------krga~ag~F~~~~~~~e-~~---Dnf~qa~a~~g~~kEAEe~~l~Iq 147 (164)
+-.....+|...+.-+. .. .+++.++...|+++||++.|...-
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al 138 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL 138 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22334445554443221 11 123447778899999999887643
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=79.75 E-value=15 Score=26.67 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=62.5
Q ss_pred Ccchhhhhcccccccc---hhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002 22 GGEGALQVLPPLIDVI---PESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRRAKFWFAFKAFD 90 (164)
Q Consensus 22 ~G~~Al~vLp~L~~~~---pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd 90 (164)
+-+.|++.+...++.. +++..++...+... |.++|.+ ..+. .......++..++..|++-.|.+.|+
T Consensus 52 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~ 129 (252)
T 2ho1_A 52 NTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR--NARVLNNYGGFLYEQKRYEEAYQRLL 129 (252)
T ss_dssp CTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--cHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3367777766665543 44555555444433 3333322 2221 12233345566777889888888888
Q ss_pred HHHh--cCCC-ccchhh---------hHhhHHHHHHHHHhcccccc-----chhHHHHHhcCHHHHHHHHHHhhcc
Q psy12002 91 MLER--LEPL-AEYWEG---------KRGACAGLMQMIMAGKENRL-----NVPWAKCALGQYKEAEEMFLLVQNE 149 (164)
Q Consensus 91 ~le~--lD~~-pe~~~G---------krga~ag~F~~~~~~~e~~D-----nf~qa~a~~g~~kEAEe~~l~Iq~~ 149 (164)
-+-. .+|. ++.|.. +-.-+..+|...+... |.+ .+..++...|++++|.+.+..+-..
T Consensus 130 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 130 EASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp HHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7655 3332 222221 1111222333222211 111 1233566669999998888776543
No 56
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=79.52 E-value=13 Score=25.90 Aligned_cols=56 Identities=9% Similarity=-0.087 Sum_probs=38.0
Q ss_pred cchhhhHHHHHHHHHH------------HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002 36 VIPESRLNLVIYHLKQ------------AWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDM 91 (164)
Q Consensus 36 ~~pear~NLvi~~l~~------------Aw~lyl~~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~ 91 (164)
..+.+..++...+... |..++.+.++....-..+..++...+..|++-.|.+.|.-
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 91 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLE 91 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456666666665544 6666666666666666666777777888888888777765
No 57
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=79.24 E-value=3.8 Score=28.01 Aligned_cols=21 Identities=5% Similarity=-0.214 Sum_probs=15.8
Q ss_pred hHHHHHhcCHHHHHHHHHHhh
Q psy12002 127 PWAKCALGQYKEAEEMFLLVQ 147 (164)
Q Consensus 127 ~qa~a~~g~~kEAEe~~l~Iq 147 (164)
+.++...|++++|.+.+...-
T Consensus 92 a~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 446677799999988887653
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=78.92 E-value=8.4 Score=30.14 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhh---------HhhHHHHHHHHHhcccc----ccchhHHHHHhc
Q psy12002 69 LQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGK---------RGACAGLMQMIMAGKEN----RLNVPWAKCALG 134 (164)
Q Consensus 69 Lq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gk---------rga~ag~F~~~~~~~e~----~Dnf~qa~a~~g 134 (164)
+...++..+..|++-.|.+.|+-.-+++|+ ++.|-.+ -..+...+..++.-..+ -.+++.++...|
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 444556666666666666666665555553 3444321 11122222222211110 112345777779
Q ss_pred CHHHHHHHHHHh
Q psy12002 135 QYKEAEEMFLLV 146 (164)
Q Consensus 135 ~~kEAEe~~l~I 146 (164)
++++|++.|...
T Consensus 87 ~~~~A~~~~~~a 98 (281)
T 2c2l_A 87 SYDEAIANLQRA 98 (281)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999998887654
No 59
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=78.63 E-value=16 Score=26.24 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhh---------hHhhHHHHHHHHHhcccc-cc---chhHHHHHh
Q psy12002 68 ILQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEG---------KRGACAGLMQMIMAGKEN-RL---NVPWAKCAL 133 (164)
Q Consensus 68 LLq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~G---------krga~ag~F~~~~~~~e~-~D---nf~qa~a~~ 133 (164)
....++...+..|++-.|.+.|+..-..+|. ++.|.. +-..+..+|...+.-..+ .+ .++.++...
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 220 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 220 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 3345556677788999999999887676665 444442 122233333333322111 11 124477777
Q ss_pred cCHHHHHHHHHHhhc
Q psy12002 134 GQYKEAEEMFLLVQN 148 (164)
Q Consensus 134 g~~kEAEe~~l~Iq~ 148 (164)
|++++|.+.+...-.
T Consensus 221 g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 221 KEYASALETLDAART 235 (258)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999888876543
No 60
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=78.26 E-value=9.8 Score=23.66 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=18.1
Q ss_pred hHHHHHhcCHHHHHHHHHHhhccc
Q psy12002 127 PWAKCALGQYKEAEEMFLLVQNEG 150 (164)
Q Consensus 127 ~qa~a~~g~~kEAEe~~l~Iq~~~ 150 (164)
+.++...|++++|.+.+...-...
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcC
Confidence 456677799999999988765543
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=78.25 E-value=17 Score=28.95 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=29.8
Q ss_pred HHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12002 52 AWDLYLTMDT-SPESLQILQLIANESYRRAKFWFAFKAFDMLER 94 (164)
Q Consensus 52 Aw~lyl~~e~-~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~ 94 (164)
|.+++.+.++ .......+..++..+...|++-.|.+.|.-.-.
T Consensus 169 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 212 (383)
T 3ulq_A 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYS 212 (383)
T ss_dssp HHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 6666666665 344455666777778889999888887766433
No 62
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=78.20 E-value=17 Score=29.01 Aligned_cols=125 Identities=16% Similarity=0.115 Sum_probs=65.2
Q ss_pred hhhhhccccccc--chhhhHHHHHHHHHH------------HHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002 25 GALQVLPPLIDV--IPESRLNLVIYHLKQ------------AWDLYLTMDTS-PESLQILQLIANESYRRAKFWFAFKAF 89 (164)
Q Consensus 25 ~Al~vLp~L~~~--~pear~NLvi~~l~~------------Aw~lyl~~e~~-~eaf~LLq~IandcY~~~~f~yA~kaF 89 (164)
.|+++++.+.+. ..++-.||...|... |.+++.+..+. ...-..+-.++..+...|++-.|.+.|
T Consensus 126 ~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 205 (378)
T 3q15_A 126 EAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHL 205 (378)
T ss_dssp HHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344444444332 334555665554433 66677666653 344555567777788899998888877
Q ss_pred HHHHh----cCCCccch------------hhhHhhHHHHHHHHHh-----cccc----ccchhHHHHHhcCHHHHHHHHH
Q psy12002 90 DMLER----LEPLAEYW------------EGKRGACAGLMQMIMA-----GKEN----RLNVPWAKCALGQYKEAEEMFL 144 (164)
Q Consensus 90 d~le~----lD~~pe~~------------~Gkrga~ag~F~~~~~-----~~e~----~Dnf~qa~a~~g~~kEAEe~~l 144 (164)
.-.-+ .+..+... .|+-.-+...|...+. +... -.+++.++...|++++|.+.+.
T Consensus 206 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 285 (378)
T 3q15_A 206 EAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIE 285 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 65333 22211110 0111222333333332 1110 1122346666799999988887
Q ss_pred Hhhcc
Q psy12002 145 LVQNE 149 (164)
Q Consensus 145 ~Iq~~ 149 (164)
..-.-
T Consensus 286 ~al~~ 290 (378)
T 3q15_A 286 EGLDH 290 (378)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 63
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=78.04 E-value=12 Score=24.62 Aligned_cols=62 Identities=13% Similarity=0.060 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhHhhHHHHHHHHHhccccccchhHHHHHhcCHHHHHHHH
Q psy12002 64 ESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMF 143 (164)
Q Consensus 64 eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~pe~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~a~~g~~kEAEe~~ 143 (164)
+....+-.++...+..|++-.|.+.|+-.-+++|+. .+ +. .+++.++...|++++|.+.+
T Consensus 25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~--------~~----------~~l~~~~~~~g~~~~A~~~~ 84 (117)
T 3k9i_A 25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH--QA--------LR----------VFYAMVLYNLGRYEQGVELL 84 (117)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH--------HH----------HHHHHHHHHHTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hH--------HH----------HHHHHHHHHcCCHHHHHHHH
Confidence 334455566777778888888888888877777654 11 11 12455666677777777766
Q ss_pred HH
Q psy12002 144 LL 145 (164)
Q Consensus 144 l~ 145 (164)
..
T Consensus 85 ~~ 86 (117)
T 3k9i_A 85 LK 86 (117)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 64
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=78.00 E-value=16 Score=29.76 Aligned_cols=74 Identities=8% Similarity=-0.004 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhh---------HhhHHHHHHHHHhcccc-c---cchhHHHHHhcCHHH
Q psy12002 73 ANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGK---------RGACAGLMQMIMAGKEN-R---LNVPWAKCALGQYKE 138 (164)
Q Consensus 73 andcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gk---------rga~ag~F~~~~~~~e~-~---Dnf~qa~a~~g~~kE 138 (164)
+...+..|++-.|.+.|+-.-+++|+ ++.|.++ -.-+..+|...+....+ . ..++.++...|++++
T Consensus 317 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 396 (537)
T 3fp2_A 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDT 396 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence 33345577777777777776666654 3443321 11122233322222111 1 112346666688888
Q ss_pred HHHHHHHh
Q psy12002 139 AEEMFLLV 146 (164)
Q Consensus 139 AEe~~l~I 146 (164)
|.+.+...
T Consensus 397 A~~~~~~a 404 (537)
T 3fp2_A 397 AIKQYDIA 404 (537)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777664
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=77.80 E-value=18 Score=26.71 Aligned_cols=23 Identities=22% Similarity=0.040 Sum_probs=17.2
Q ss_pred hhHHHHHhcCHHHHHHHHHHhhc
Q psy12002 126 VPWAKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 126 f~qa~a~~g~~kEAEe~~l~Iq~ 148 (164)
++.++...|++++|.+.+...-.
T Consensus 309 la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 309 LGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34577778999999988876543
No 66
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=77.78 E-value=10 Score=23.47 Aligned_cols=61 Identities=13% Similarity=-0.018 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhHhhHHHHHHHHHhccccccchhHHHHHh-cCHHHHHHHHHHhhcc
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCAL-GQYKEAEEMFLLVQNE 149 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~pe~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~a~~-g~~kEAEe~~l~Iq~~ 149 (164)
.++...+..|++-.|.+.|+..-+++|.....+. . ..++.++... |++++|.+.+..+-+.
T Consensus 45 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--------~----------~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 45 MKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV--------W----------AAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHH--------H----------HHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcccchHHH--------H----------HHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 3444555677777777777766566554101111 0 1234466677 8999999888776543
No 67
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=77.74 E-value=15 Score=27.45 Aligned_cols=79 Identities=10% Similarity=0.046 Sum_probs=36.4
Q ss_pred hhccCc--chhhhhcccccccc---hhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHH
Q psy12002 18 VVFRGG--EGALQVLPPLIDVI---PESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRRAKFWF 84 (164)
Q Consensus 18 ~vFr~G--~~Al~vLp~L~~~~---pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~~~f~y 84 (164)
..++.| +.|++.+...++.. +++..++...+... |...+.+ .++. ....+..++..+...|++-.
T Consensus 30 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~~~~~~ 107 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIAVHAALAVSHTNEHNANA 107 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC--CHHHHHHHHHHHHHcCCHHH
Confidence 344444 66777776666544 34555555444333 2222221 1111 11122233444455666666
Q ss_pred HHHHHHHHHhcCCC
Q psy12002 85 AFKAFDMLERLEPL 98 (164)
Q Consensus 85 A~kaFd~le~lD~~ 98 (164)
|.+.|+..-+.+|.
T Consensus 108 A~~~~~~~~~~~~~ 121 (327)
T 3cv0_A 108 ALASLRAWLLSQPQ 121 (327)
T ss_dssp HHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHhCCc
Confidence 66666555444443
No 68
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=77.70 E-value=22 Score=27.32 Aligned_cols=29 Identities=14% Similarity=-0.041 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPLA 99 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~p 99 (164)
.++...+..|++-.|.+.|.-.-.++|..
T Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 165 (368)
T 1fch_A 137 ALAVSFTNESLQRQACEILRDWLRYTPAY 165 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 44555666888888888888876776653
No 69
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=77.66 E-value=8.6 Score=24.45 Aligned_cols=82 Identities=10% Similarity=0.013 Sum_probs=48.9
Q ss_pred chhhhhccccccc---chhhhHHHHHHHHHH-----HHHHHHhcCCch--------hHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002 24 EGALQVLPPLIDV---IPESRLNLVIYHLKQ-----AWDLYLTMDTSP--------ESLQILQLIANESYRRAKFWFAFK 87 (164)
Q Consensus 24 ~~Al~vLp~L~~~---~pear~NLvi~~l~~-----Aw~lyl~~e~~~--------eaf~LLq~IandcY~~~~f~yA~k 87 (164)
+.|+..+...++. .+.+..|+...+... |..+|.+.-... .....+-.++...+..|++-.|.+
T Consensus 21 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 100 (131)
T 1elr_A 21 DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIH 100 (131)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 5566655554443 356677777666554 444333321111 013444556666777888889999
Q ss_pred HHHHHHhcCCCccchhhh
Q psy12002 88 AFDMLERLEPLAEYWEGK 105 (164)
Q Consensus 88 aFd~le~lD~~pe~~~Gk 105 (164)
.|...-+++|+++.+...
T Consensus 101 ~~~~~~~~~~~~~~~~~l 118 (131)
T 1elr_A 101 FYNKSLAEHRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHH
Confidence 998877788877666553
No 70
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=77.34 E-value=17 Score=26.29 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=16.1
Q ss_pred hHHHHHhcCHHHHHHHHHHhhc
Q psy12002 127 PWAKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 127 ~qa~a~~g~~kEAEe~~l~Iq~ 148 (164)
+.++...|++++|++.+...-+
T Consensus 134 a~~~~~~g~~~~A~~~~~~al~ 155 (283)
T 3edt_B 134 ALLCQNQGKAEEVEYYYRRALE 155 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3466667999999988766543
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=76.79 E-value=20 Score=26.49 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=15.5
Q ss_pred hHHHHHhcCHHHHHHHHHHhhc
Q psy12002 127 PWAKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 127 ~qa~a~~g~~kEAEe~~l~Iq~ 148 (164)
+.++...|++++|.+.+...-.
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3456666999999888766543
No 72
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=76.58 E-value=13 Score=24.21 Aligned_cols=21 Identities=24% Similarity=0.055 Sum_probs=15.9
Q ss_pred hhHHHHHhcCHHHHHHHHHHh
Q psy12002 126 VPWAKCALGQYKEAEEMFLLV 146 (164)
Q Consensus 126 f~qa~a~~g~~kEAEe~~l~I 146 (164)
++.++...|++++|.+.+...
T Consensus 135 la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 135 LGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH
Confidence 455777779999998887654
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=76.45 E-value=9.4 Score=32.41 Aligned_cols=93 Identities=9% Similarity=-0.043 Sum_probs=58.0
Q ss_pred HHHhcCCc-hhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhh---------------
Q psy12002 55 LYLTMDTS-PESLQILQ--------------LIANESYRRAKFWFAFKAFDMLERLEPLAEYWEG--------------- 104 (164)
Q Consensus 55 lyl~~e~~-~eaf~LLq--------------~IandcY~~~~f~yA~kaFd~le~lD~~pe~~~G--------------- 104 (164)
.|...+.. ++|...++ .++...+..|++-.|.+.|+-.-+++|+++.|..
T Consensus 111 ~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~ 190 (474)
T 4abn_A 111 ALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDE 190 (474)
T ss_dssp HHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHH
T ss_pred HHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhh
Confidence 34455665 66666555 4455567799999999999998889988655542
Q ss_pred ---hHhhHHHHHHHHHhcccccc-----chhHHHHHh--------cCHHHHHHHHHHhhc
Q psy12002 105 ---KRGACAGLMQMIMAGKENRL-----NVPWAKCAL--------GQYKEAEEMFLLVQN 148 (164)
Q Consensus 105 ---krga~ag~F~~~~~~~e~~D-----nf~qa~a~~--------g~~kEAEe~~l~Iq~ 148 (164)
+-.-...+|...+.-. |.+ +++.++... |++++|.+.|...-.
T Consensus 191 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 191 HSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 2223333444333322 221 224477777 889999888876543
No 74
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=76.24 E-value=25 Score=27.18 Aligned_cols=44 Identities=9% Similarity=-0.051 Sum_probs=25.4
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12002 52 AWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERL 95 (164)
Q Consensus 52 Aw~lyl~~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~l 95 (164)
+..++-+..+.......+..++...+..|++-.|.+.|+..-.+
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 256 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 256 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 44444444444444445555666667778887777777664433
No 75
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=75.92 E-value=31 Score=29.34 Aligned_cols=122 Identities=9% Similarity=-0.085 Sum_probs=58.1
Q ss_pred chhhhhccccccc---chhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002 24 EGALQVLPPLIDV---IPESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRRAKFWFAFKAFDML 92 (164)
Q Consensus 24 ~~Al~vLp~L~~~---~pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~l 92 (164)
+.|++.+...++. .+++..||...+... |.++|.+ .++. ....+..++...+..|++-.|.+.|+-.
T Consensus 6 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 6 PRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG--HPEAVARLGRVRWTQQRHAEAAVLLQQA 83 (568)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555555555543 345666666555544 4444433 2221 2233345566677788888888888876
Q ss_pred HhcCCC-ccchh---------hhHhhHHHHHHHHHhcccc----ccchhHHHHHh---cCHHHHHHHHHHhh
Q psy12002 93 ERLEPL-AEYWE---------GKRGACAGLMQMIMAGKEN----RLNVPWAKCAL---GQYKEAEEMFLLVQ 147 (164)
Q Consensus 93 e~lD~~-pe~~~---------Gkrga~ag~F~~~~~~~e~----~Dnf~qa~a~~---g~~kEAEe~~l~Iq 147 (164)
-+++|+ ++.|. |+-..+...|...+.-..+ -.++..++... |++++|.+.+...-
T Consensus 84 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 84 SDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 666664 23332 1122222333332222111 11234477777 89999988876653
No 76
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=75.69 E-value=18 Score=25.32 Aligned_cols=75 Identities=12% Similarity=-0.047 Sum_probs=37.0
Q ss_pred hhccCc--chhhhhcccccccc---hhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHH-HHHH
Q psy12002 18 VVFRGG--EGALQVLPPLIDVI---PESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRR-AKFW 83 (164)
Q Consensus 18 ~vFr~G--~~Al~vLp~L~~~~---pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~-~~f~ 83 (164)
+.++.| +.|++.+...+... +++..++...+... |.++|.+ ..+.. ...+..++..++.. |++-
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~ 94 (225)
T 2vq2_A 17 EYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS--AEINNNYGWFLCGRLNRPA 94 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhcCcHH
Confidence 344444 66777666555543 44555554444332 3333322 11111 11222344455667 7777
Q ss_pred HHHHHHHHHHh
Q psy12002 84 FAFKAFDMLER 94 (164)
Q Consensus 84 yA~kaFd~le~ 94 (164)
.|.+.|+..-.
T Consensus 95 ~A~~~~~~~~~ 105 (225)
T 2vq2_A 95 ESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 77777776555
No 77
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=74.89 E-value=22 Score=26.02 Aligned_cols=81 Identities=9% Similarity=0.007 Sum_probs=48.3
Q ss_pred hhccCc--chhhhhcccccccch---hhhHHHHHHHHHH-----HHHHHHh---cCCchhH-HHHHHHHHHHHHHHHHHH
Q psy12002 18 VVFRGG--EGALQVLPPLIDVIP---ESRLNLVIYHLKQ-----AWDLYLT---MDTSPES-LQILQLIANESYRRAKFW 83 (164)
Q Consensus 18 ~vFr~G--~~Al~vLp~L~~~~p---ear~NLvi~~l~~-----Aw~lyl~---~e~~~ea-f~LLq~IandcY~~~~f~ 83 (164)
+.++.| +.|++.+...++..| ++..++...+... |.+.|.+ ..+..+. ...+-.++...+..|++-
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 91 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDS 91 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHH
Confidence 555655 688888888777554 4556665544433 3333332 1111111 222345566667788999
Q ss_pred HHHHHHHHHHhcCCC
Q psy12002 84 FAFKAFDMLERLEPL 98 (164)
Q Consensus 84 yA~kaFd~le~lD~~ 98 (164)
.|.+.|+..-+++|+
T Consensus 92 ~A~~~~~~a~~~~~~ 106 (272)
T 3u4t_A 92 LAIQQYQAAVDRDTT 106 (272)
T ss_dssp HHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhcCcc
Confidence 999999887777765
No 78
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=74.44 E-value=19 Score=27.82 Aligned_cols=67 Identities=13% Similarity=-0.082 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhHhhHHHHHHHHHhccccccchhHHHHHhcCHHHHHHHHHH
Q psy12002 66 LQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLL 145 (164)
Q Consensus 66 f~LLq~IandcY~~~~f~yA~kaFd~le~lD~~pe~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~a~~g~~kEAEe~~l~ 145 (164)
...+..++..+...|++-.|.+.|...-.+.+.....++. +.+. ..++.++...|++++|.+.+..
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~----~~~~----------~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE----GRAC----------WSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH----HHHH----------HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHH----HHHH----------HHHHHHHHHcCCHHHHHHHHHH
Confidence 3344455555666777776666665533332211111110 1111 1244566666777777776654
Q ss_pred h
Q psy12002 146 V 146 (164)
Q Consensus 146 I 146 (164)
.
T Consensus 333 a 333 (406)
T 3sf4_A 333 H 333 (406)
T ss_dssp H
T ss_pred H
Confidence 3
No 79
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=73.88 E-value=33 Score=27.53 Aligned_cols=16 Identities=25% Similarity=0.196 Sum_probs=7.2
Q ss_pred HHHHhcCHHHHHHHHH
Q psy12002 129 AKCALGQYKEAEEMFL 144 (164)
Q Consensus 129 a~a~~g~~kEAEe~~l 144 (164)
++...|++++|.+.|.
T Consensus 458 ~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 458 MKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHH
Confidence 3333455555544443
No 80
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=73.57 E-value=34 Score=28.69 Aligned_cols=120 Identities=12% Similarity=0.029 Sum_probs=66.8
Q ss_pred hhhhcccccccchhhhHHHHHHHHHH----------HHHHHHhc-CCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002 26 ALQVLPPLIDVIPESRLNLVIYHLKQ----------AWDLYLTM-DTS--PESLQILQLIANESYRRAKFWFAFKAFDML 92 (164)
Q Consensus 26 Al~vLp~L~~~~pear~NLvi~~l~~----------Aw~lyl~~-e~~--~eaf~LLq~IandcY~~~~f~yA~kaFd~l 92 (164)
|+..|..+++.-+ +-|...+.++. |...+-+. +.. .+...+.-.++.-..++|..-.|.|.+..+
T Consensus 85 a~~~l~~l~~~~~--~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDKQ--NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTSC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777777765321 11333344443 44443332 211 133333334444456699999999999999
Q ss_pred HhcCCC------c------cchh----h--hHhhHHHHHHHHHhccccc---cchhH-HHHHhcCHHHHHHHHHHhhc
Q psy12002 93 ERLEPL------A------EYWE----G--KRGACAGLMQMIMAGKENR---LNVPW-AKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 93 e~lD~~------p------e~~~----G--krga~ag~F~~~~~~~e~~---Dnf~q-a~a~~g~~kEAEe~~l~Iq~ 148 (164)
.+.||+ . +-|- | +-+....+|..+ ..+.|+ -..-. +.-.+|+++|||+.+..+..
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El-~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEEL-SQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHH-HTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHH-HHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888872 2 2222 2 344556666653 333332 11212 55566999999999986543
No 81
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=73.55 E-value=26 Score=26.13 Aligned_cols=119 Identities=8% Similarity=-0.014 Sum_probs=62.7
Q ss_pred chhhhhcccccccc---hhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002 24 EGALQVLPPLIDVI---PESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRRAKFWFAFKAFDML 92 (164)
Q Consensus 24 ~~Al~vLp~L~~~~---pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~l 92 (164)
+.|++.+...++.. +.+..++...+.+. |..++.+ ..+. ....+..++...+..|++-.|.+.|+..
T Consensus 155 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD--DAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55666665555543 45555555544433 3333322 2211 1122334555566788888888888886
Q ss_pred HhcCCC-ccchh---------hhHhhHHHHHHHHHhcccc-------------cc---chhHHHHHhcCHHHHHHHHH
Q psy12002 93 ERLEPL-AEYWE---------GKRGACAGLMQMIMAGKEN-------------RL---NVPWAKCALGQYKEAEEMFL 144 (164)
Q Consensus 93 e~lD~~-pe~~~---------Gkrga~ag~F~~~~~~~e~-------------~D---nf~qa~a~~g~~kEAEe~~l 144 (164)
-+.+|+ ++.|- |+-.....+|...+.-... .. .+..++...|++++|++++.
T Consensus 233 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 233 LDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 666654 44443 2222333344433322111 01 12347777799999998875
No 82
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=72.60 E-value=31 Score=26.70 Aligned_cols=122 Identities=12% Similarity=-0.004 Sum_probs=59.9
Q ss_pred chhhhhcccccccc---hhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002 24 EGALQVLPPLIDVI---PESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRRAKFWFAFKAFDML 92 (164)
Q Consensus 24 ~~Al~vLp~L~~~~---pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~l 92 (164)
+.|++.+...++.. +++..++...+.+. |...|.+ .++.. ...+..++......|++-.|.+.|+-.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a 159 (365)
T 4eqf_A 82 PVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN--LKALMALAVSYTNTSHQQDACEALKNW 159 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 55666665555433 34455554444333 3333222 22111 122334455566788888888888887
Q ss_pred HhcCCC-ccchh-------------------hhHhhHHHHHHHHHhcccc---c---cchhHHHHHhcCHHHHHHHHHHh
Q psy12002 93 ERLEPL-AEYWE-------------------GKRGACAGLMQMIMAGKEN---R---LNVPWAKCALGQYKEAEEMFLLV 146 (164)
Q Consensus 93 e~lD~~-pe~~~-------------------Gkrga~ag~F~~~~~~~e~---~---Dnf~qa~a~~g~~kEAEe~~l~I 146 (164)
-+++|+ ++.|. |+-.-...+|...+.-..+ . .++..++...|++++|.+.+...
T Consensus 160 l~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 239 (365)
T 4eqf_A 160 IKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239 (365)
T ss_dssp HHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777665 34442 2222333444433332211 0 11233555667788877777654
Q ss_pred h
Q psy12002 147 Q 147 (164)
Q Consensus 147 q 147 (164)
-
T Consensus 240 l 240 (365)
T 4eqf_A 240 L 240 (365)
T ss_dssp H
T ss_pred H
Confidence 4
No 83
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=72.23 E-value=16 Score=23.13 Aligned_cols=64 Identities=8% Similarity=-0.018 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhhHhhHHHHHHHHHhccccccchhHHHHHhcCHHHHHHHHHHhhc
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~a~~g~~kEAEe~~l~Iq~ 148 (164)
.++...+..|++--|.+.|.-.-.++|. +..+++.. -++ .+++.++...|++++|.+.|..+-.
T Consensus 43 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~~----------~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 43 NQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA----KAY----------ARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH----HHH----------HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHH----HHH----------HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444445566666666666655444432 22222111 111 1245567777999999888876654
No 84
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=72.15 E-value=12 Score=32.66 Aligned_cols=32 Identities=13% Similarity=0.084 Sum_probs=24.3
Q ss_pred HHHHhcCHHHHHHHHHHhhccccc-Cchhhhhh
Q psy12002 129 AKCALGQYKEAEEMFLLVQNEGLK-NDYVYISH 160 (164)
Q Consensus 129 a~a~~g~~kEAEe~~l~Iq~~~~k-n~~~y~sw 160 (164)
+++..|+.++|+++|..|.+.+++ +..+|.+-
T Consensus 149 ~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 149 GFCRKGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 667779999999999999888776 44556543
No 85
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=72.14 E-value=4 Score=36.70 Aligned_cols=76 Identities=16% Similarity=0.025 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhhHhhH---------HHHHHHHHhcccc----ccchhHHHHHhcCH
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGKRGAC---------AGLMQMIMAGKEN----RLNVPWAKCALGQY 136 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gkrga~---------ag~F~~~~~~~e~----~Dnf~qa~a~~g~~ 136 (164)
..+...+..|++-.|.+.|+-.-++||+ ++.|-. .|.+ ...|..++.-..+ -.+++.++...|++
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~-lg~~~~~~g~~~~~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 472 YRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA-LAATAELAGNTDEHKFYQTVWSTNDGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH-HHHHHHHHTCCCTTCHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHcCChHHHHHHHHHHHhCCchHHHHHHHHHHHHHcCCH
Confidence 3445567799999999999998888875 455543 2111 1223322221110 11223467777999
Q ss_pred HHHHHHHHHhh
Q psy12002 137 KEAEEMFLLVQ 147 (164)
Q Consensus 137 kEAEe~~l~Iq 147 (164)
++|.+.+...-
T Consensus 551 ~~A~~~~~~al 561 (681)
T 2pzi_A 551 VGAVRTLDEVP 561 (681)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHhhc
Confidence 99999988764
No 86
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=71.47 E-value=22 Score=27.73 Aligned_cols=39 Identities=13% Similarity=0.033 Sum_probs=19.6
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002 52 AWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDM 91 (164)
Q Consensus 52 Aw~lyl~~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~ 91 (164)
|.++|.+.++...+-..+..++.-... |++-.|.+.|+-
T Consensus 102 Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 102 ASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 444554444444444444444444333 666666666654
No 87
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=70.90 E-value=21 Score=23.89 Aligned_cols=28 Identities=11% Similarity=-0.019 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
.++...+..|++-.|.+.|+-.-+++|+
T Consensus 52 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 79 (166)
T 1a17_A 52 NRSLAYLRTECYGYALGDATRAIELDKK 79 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 3444455677777777777776666654
No 88
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=70.18 E-value=18 Score=22.81 Aligned_cols=23 Identities=17% Similarity=0.040 Sum_probs=16.2
Q ss_pred hHHHHHhcCHHHHHHHHHHhhcc
Q psy12002 127 PWAKCALGQYKEAEEMFLLVQNE 149 (164)
Q Consensus 127 ~qa~a~~g~~kEAEe~~l~Iq~~ 149 (164)
+.++...|++++|.+.+...-.-
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 34666678999998888765443
No 89
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=69.07 E-value=18 Score=22.53 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=16.5
Q ss_pred hhHHHHHhcCHHHHHHHHHHhhc
Q psy12002 126 VPWAKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 126 f~qa~a~~g~~kEAEe~~l~Iq~ 148 (164)
+..++...|++++|.+.+..+-.
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 34566677899999888876543
No 90
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=68.85 E-value=20 Score=28.82 Aligned_cols=31 Identities=13% Similarity=-0.008 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 68 ILQLIANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 68 LLq~IandcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
++..++...++.|++-.|.+.|+-.-++||+
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3334555566688888888888877677764
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=68.58 E-value=3.5 Score=29.15 Aligned_cols=26 Identities=12% Similarity=-0.083 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 73 ANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 73 andcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
+...+..|++-.|.+.|...-++||+
T Consensus 72 g~~~~~~~~~~~A~~~~~~al~~~p~ 97 (150)
T 4ga2_A 72 GLLYELEENTDKAVECYRRSVELNPT 97 (150)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCC
Confidence 33345577777777777766566654
No 92
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=67.72 E-value=25 Score=23.55 Aligned_cols=109 Identities=12% Similarity=-0.022 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHH-----HHHHHHhcCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhh-------
Q psy12002 40 SRLNLVIYHLKQ-----AWDLYLTMDTSP-ESLQILQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGK------- 105 (164)
Q Consensus 40 ar~NLvi~~l~~-----Aw~lyl~~e~~~-eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gk------- 105 (164)
+-.++...+... |-.++.+.-... +....+..++..++..|++-.|.+.|+..-..+|+ ++.|-..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 334444444443 556665543322 22344556677788899999999999987777664 3433321
Q ss_pred --HhhHHHHHHHHHhcccccc-----chhHHHHHhcCHHHHHHHHHHhhcc
Q psy12002 106 --RGACAGLMQMIMAGKENRL-----NVPWAKCALGQYKEAEEMFLLVQNE 149 (164)
Q Consensus 106 --rga~ag~F~~~~~~~e~~D-----nf~qa~a~~g~~kEAEe~~l~Iq~~ 149 (164)
-.-+..+|..++... |.+ .+++++...|++++|.+.+...-..
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence 111222233222211 111 1234666779999999998776544
No 93
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=67.49 E-value=36 Score=25.34 Aligned_cols=79 Identities=11% Similarity=-0.032 Sum_probs=45.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhcCCC-ccchhhh---------HhhHHHHHHHHHhccccccc-----hhHHHHHhc
Q psy12002 71 LIANESYRRA-KFWFAFKAFDMLERLEPL-AEYWEGK---------RGACAGLMQMIMAGKENRLN-----VPWAKCALG 134 (164)
Q Consensus 71 ~IandcY~~~-~f~yA~kaFd~le~lD~~-pe~~~Gk---------rga~ag~F~~~~~~~e~~Dn-----f~qa~a~~g 134 (164)
.++..++..| .+-.|.+.|+-.-+++|. ++.|..+ -.-+..+|...+.-. |... ++.++...|
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 3455566788 788888888887777765 4444421 112223333322211 2111 234666779
Q ss_pred CHHHHHHHHHHhhccc
Q psy12002 135 QYKEAEEMFLLVQNEG 150 (164)
Q Consensus 135 ~~kEAEe~~l~Iq~~~ 150 (164)
++++|++.+...-...
T Consensus 174 ~~~~A~~~~~~al~~~ 189 (330)
T 3hym_B 174 NSKLAERFFSQALSIA 189 (330)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999998888766543
No 94
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=67.31 E-value=22 Score=22.97 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 68 ILQLIANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 68 LLq~IandcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
.+-.++...+..|++-.|.+.|+..-++||+
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 51 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDFDPT 51 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 4445666677788888888888877677764
No 95
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=66.38 E-value=26 Score=27.51 Aligned_cols=22 Identities=18% Similarity=0.006 Sum_probs=16.4
Q ss_pred hhHHHHHhcCHHHHHHHHHHhh
Q psy12002 126 VPWAKCALGQYKEAEEMFLLVQ 147 (164)
Q Consensus 126 f~qa~a~~g~~kEAEe~~l~Iq 147 (164)
+++++...|++++|.+.+...-
T Consensus 349 la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 349 LGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 3457777899999988876644
No 96
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=65.66 E-value=25 Score=23.88 Aligned_cols=28 Identities=4% Similarity=-0.073 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
.++..++..|++-.|.+.|+..-++||+
T Consensus 57 ~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 57 GLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3444456677777777777776666654
No 97
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=65.49 E-value=38 Score=24.89 Aligned_cols=20 Identities=20% Similarity=0.130 Sum_probs=14.3
Q ss_pred hHHHHHhcCHHHHHHHHHHh
Q psy12002 127 PWAKCALGQYKEAEEMFLLV 146 (164)
Q Consensus 127 ~qa~a~~g~~kEAEe~~l~I 146 (164)
+.++...|++++|.+.+...
T Consensus 270 a~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 270 GNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 44666778888888776554
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=65.48 E-value=46 Score=25.88 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy12002 50 KQAWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEP 97 (164)
Q Consensus 50 ~~Aw~lyl~~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~ 97 (164)
++|.+++-+.++...+-..+..++.....+|++--|.+.|+-.-++.+
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 336666666655555666677777777788998888888887655543
No 99
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=64.24 E-value=44 Score=26.40 Aligned_cols=56 Identities=18% Similarity=0.092 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHH------------HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12002 39 ESRLNLVIYHLKQ------------AWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLER 94 (164)
Q Consensus 39 ear~NLvi~~l~~------------Aw~lyl~~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~ 94 (164)
.+.+||...|... |.+++.+..+.+.....+-.++...+..|++-.|.+.|+-.-.
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3566766655544 5555555555344456666777778888888888887776333
No 100
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=64.08 E-value=24 Score=22.03 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 68 ILQLIANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 68 LLq~IandcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
.+..++...+..|++-.|.+.|+..-+++|+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 36 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQ 36 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3455677788888888888888887677764
No 101
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=63.44 E-value=42 Score=24.70 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=16.2
Q ss_pred hhHHHHHhcCHHHHHHHHHHhh
Q psy12002 126 VPWAKCALGQYKEAEEMFLLVQ 147 (164)
Q Consensus 126 f~qa~a~~g~~kEAEe~~l~Iq 147 (164)
++.++...|++++|++.+...-
T Consensus 201 la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 201 LASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3456777799999988876654
No 102
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=63.25 E-value=28 Score=22.56 Aligned_cols=81 Identities=11% Similarity=-0.059 Sum_probs=42.6
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhHhhHHHHHHHHHhccccccchhHHHH
Q psy12002 52 AWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAKC 131 (164)
Q Consensus 52 Aw~lyl~~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~pe~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~a 131 (164)
+.++.-+..+....-..+..++...+..|++-.|.+.|+..-.+.+..+..+. .+.+. .+++.++.
T Consensus 35 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~----~~~~~----------~~l~~~~~ 100 (164)
T 3ro3_A 35 RLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV----EAQSC----------YSLGNTYT 100 (164)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH----HHHHH----------HHHHHHHH
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH----HHHHH----------HHHHHHHH
Confidence 55555554444444445555666666777777777766654333222111111 11111 12455667
Q ss_pred HhcCHHHHHHHHHHh
Q psy12002 132 ALGQYKEAEEMFLLV 146 (164)
Q Consensus 132 ~~g~~kEAEe~~l~I 146 (164)
..|++++|++.+...
T Consensus 101 ~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 101 LLQDYEKAIDYHLKH 115 (164)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 778888887776544
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=63.22 E-value=23 Score=27.54 Aligned_cols=70 Identities=11% Similarity=-0.016 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC-ccchh---------hhHhhHHHHHHHHHhccccc------cchhHHHHHhcCHHHH
Q psy12002 76 SYRRAKFWFAFKAFDMLERLEPL-AEYWE---------GKRGACAGLMQMIMAGKENR------LNVPWAKCALGQYKEA 139 (164)
Q Consensus 76 cY~~~~f~yA~kaFd~le~lD~~-pe~~~---------Gkrga~ag~F~~~~~~~e~~------Dnf~qa~a~~g~~kEA 139 (164)
....+..--|.+.+.-.-..+|+ ++.+- |+.......|..+++...+. .++..++..+|+..+|
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 33455555566666555555554 33332 44555556666655543211 2234477777888888
Q ss_pred HHHHHH
Q psy12002 140 EEMFLL 145 (164)
Q Consensus 140 Ee~~l~ 145 (164)
...++.
T Consensus 275 ~~~~r~ 280 (287)
T 3qou_A 275 ASXYRR 280 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 104
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=62.67 E-value=41 Score=24.38 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q psy12002 76 SYRRAKFWFAFKAFDMLERLEP 97 (164)
Q Consensus 76 cY~~~~f~yA~kaFd~le~lD~ 97 (164)
.+..|++-.|.+.|+..-.++|
T Consensus 87 ~~~~~~~~~A~~~~~~al~~~~ 108 (275)
T 1xnf_A 87 LTQAGNFDAAYEAFDSVLELDP 108 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHccCHHHHHHHHHHHHhcCc
Confidence 3344444445555444444443
No 105
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=62.52 E-value=52 Score=28.65 Aligned_cols=128 Identities=9% Similarity=0.063 Sum_probs=76.6
Q ss_pred Ccchhhhhcccccc--cchh-hhHHHHHHH---------------HHHHHHHHHhcC-----CchhHHHHHHHHHHHHHH
Q psy12002 22 GGEGALQVLPPLID--VIPE-SRLNLVIYH---------------LKQAWDLYLTMD-----TSPESLQILQLIANESYR 78 (164)
Q Consensus 22 ~G~~Al~vLp~L~~--~~pe-ar~NLvi~~---------------l~~Aw~lyl~~e-----~~~eaf~LLq~IandcY~ 78 (164)
+-+.|++++-.+.+ +-|. .=.|.+|.- +.+|++++-+|. +...+|+ .+.+.|-+
T Consensus 41 ~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn---~lI~~~~~ 117 (501)
T 4g26_A 41 DVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFT---NGARLAVA 117 (501)
T ss_dssp CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHH---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHH---HHHHHHHh
Confidence 34788888876654 3332 234555532 234667666542 2223443 34566778
Q ss_pred HHHHHHHHHHHHHHHhc--CCCccchhhh---------HhhHHHHHHHHHhccccccchh-----HHHHHhcCHHHHHHH
Q psy12002 79 RAKFWFAFKAFDMLERL--EPLAEYWEGK---------RGACAGLMQMIMAGKENRLNVP-----WAKCALGQYKEAEEM 142 (164)
Q Consensus 79 ~~~f~yA~kaFd~le~l--D~~pe~~~Gk---------rga~ag~F~~~~~~~e~~Dnf~-----qa~a~~g~~kEAEe~ 142 (164)
.|.+-.|.+.|+.+.+. .|+..+|.-. -.-+..+|.......-.++... .+++..|+..+|+++
T Consensus 118 ~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~l 197 (501)
T 4g26_A 118 KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 197 (501)
T ss_dssp HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHH
Confidence 99999999999987664 5555566522 2223334443332222233332 377778999999999
Q ss_pred HHHhhccccc
Q psy12002 143 FLLVQNEGLK 152 (164)
Q Consensus 143 ~l~Iq~~~~k 152 (164)
|..|++...+
T Consensus 198 l~~Mr~~g~~ 207 (501)
T 4g26_A 198 LQRLRDLVRQ 207 (501)
T ss_dssp HHHHHHHTSS
T ss_pred HHHHHHhCCC
Confidence 9999987654
No 106
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=62.07 E-value=55 Score=25.59 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=28.1
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy12002 52 AWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEP 97 (164)
Q Consensus 52 Aw~lyl~~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~ 97 (164)
+.++..+..+.......+..++...+..|++-.|.+.|+..-++.+
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 3344444444444444555666777778888888888877555443
No 107
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=61.43 E-value=38 Score=23.55 Aligned_cols=79 Identities=15% Similarity=0.018 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchh----------hhHhhHHHHHHHHHhcccccc------chhHHHHH
Q psy12002 70 QLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWE----------GKRGACAGLMQMIMAGKENRL------NVPWAKCA 132 (164)
Q Consensus 70 q~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~----------Gkrga~ag~F~~~~~~~e~~D------nf~qa~a~ 132 (164)
..++..+...|++-.|.+.|+..-+++|+ ++.|. |+-.-+..+|..++....+++ .+..++..
T Consensus 46 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 125 (225)
T 2vq2_A 46 LVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK 125 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH
Confidence 34556667789999999999887777764 34332 222234445555444111111 11336666
Q ss_pred hcCHHHHHHHHHHhhc
Q psy12002 133 LGQYKEAEEMFLLVQN 148 (164)
Q Consensus 133 ~g~~kEAEe~~l~Iq~ 148 (164)
.|++++|.+.+...-.
T Consensus 126 ~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 126 QGQFGLAEAYLKRSLA 141 (225)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6899999888776543
No 108
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=60.16 E-value=57 Score=25.13 Aligned_cols=48 Identities=13% Similarity=-0.022 Sum_probs=30.6
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy12002 52 AWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLA 99 (164)
Q Consensus 52 Aw~lyl~~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~p 99 (164)
|.+++-+.+....+...+..++......|++--|...|+-...++|+.
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 333333333333334455566666777899999999999887877764
No 109
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=59.87 E-value=15 Score=30.51 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-ccchhhh-------HhhHHHHHHHH---------Hh---cc-ccccc-----------
Q psy12002 78 RRAKFWFAFKAFDMLERLEPL-AEYWEGK-------RGACAGLMQMI---------MA---GK-ENRLN----------- 125 (164)
Q Consensus 78 ~~~~f~yA~kaFd~le~lD~~-pe~~~Gk-------rga~ag~F~~~---------~~---~~-e~~Dn----------- 125 (164)
..+..-.|.++|.-+-++||+ ||-|-|+ ...+.++.+.. +. +. ....+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 467788899999999999997 7999998 44555544421 00 00 11111
Q ss_pred ----------hhHHHHHhcCHHHHHHHHHHhh
Q psy12002 126 ----------VPWAKCALGQYKEAEEMFLLVQ 147 (164)
Q Consensus 126 ----------f~qa~a~~g~~kEAEe~~l~Iq 147 (164)
+..++...|+|.||.+.|..+.
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~ 129 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAP 129 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2346667799999999997664
No 110
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=59.28 E-value=65 Score=25.50 Aligned_cols=57 Identities=12% Similarity=-0.102 Sum_probs=38.4
Q ss_pred hhhhHHHHHHHHHH------------HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12002 38 PESRLNLVIYHLKQ------------AWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERL 95 (164)
Q Consensus 38 pear~NLvi~~l~~------------Aw~lyl~~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~l 95 (164)
..+.+||...|... |.+++.+..++.. ...+-.++..+++.|++--|.+.|+-.-.+
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 44677777666655 4444444444444 666777888889999999998888774443
No 111
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=59.25 E-value=49 Score=24.10 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchh
Q psy12002 72 IANESYRRAKFWFAFKAFDMLERLEPL-AEYWE 103 (164)
Q Consensus 72 IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~ 103 (164)
++...+.+|++-.|.+.|+-.-++||+ ++.|-
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 92 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLE 92 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 666677899999999999987788875 34443
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=59.16 E-value=43 Score=23.47 Aligned_cols=22 Identities=9% Similarity=-0.009 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q psy12002 76 SYRRAKFWFAFKAFDMLERLEP 97 (164)
Q Consensus 76 cY~~~~f~yA~kaFd~le~lD~ 97 (164)
....|++-.|.+.|+.+-..+|
T Consensus 50 ~~~~g~~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 50 LLETKQFELAQELLATIPLEYQ 71 (176)
T ss_dssp HHHTTCHHHHHHHHTTCCGGGC
T ss_pred HHHCCCHHHHHHHHHHhhhccC
Confidence 3344444444444444433443
No 113
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=58.76 E-value=33 Score=22.05 Aligned_cols=60 Identities=18% Similarity=0.125 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhHhhHHHHHHHHHhccccccchhHHHHHhcCHHHHHHHHHHhhc
Q psy12002 72 IANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 72 IandcY~~~~f~yA~kaFd~le~lD~~pe~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~a~~g~~kEAEe~~l~Iq~ 148 (164)
.+...+..|++-.|.+.|+.+-+.+|+..+.+. +. ..++.++...|++++|.+.+..+-+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~-------~~----------~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPN-------AL----------YWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHH-------HH----------HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHH-------HH----------HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455667788888888888887777765432111 11 1134456667888888888776544
No 114
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=58.34 E-value=34 Score=22.00 Aligned_cols=31 Identities=19% Similarity=0.180 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 68 ILQLIANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 68 LLq~IandcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
.+-.++...+..|++--|.+.|+..-++||+
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 39 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPD 39 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3445677778899999999999988788765
No 115
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=57.90 E-value=31 Score=21.45 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=14.7
Q ss_pred hHHHHHhcCHHHHHHHHHHhh
Q psy12002 127 PWAKCALGQYKEAEEMFLLVQ 147 (164)
Q Consensus 127 ~qa~a~~g~~kEAEe~~l~Iq 147 (164)
..++...|++++|.+.+..+-
T Consensus 110 a~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 110 GNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHH
Confidence 345566688888888876653
No 116
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=57.72 E-value=48 Score=23.56 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEP 97 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~ 97 (164)
.++..++..|++-.|.+.|+..-++||
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344445556666666666666555554
No 117
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=57.49 E-value=44 Score=23.08 Aligned_cols=81 Identities=11% Similarity=-0.013 Sum_probs=39.1
Q ss_pred HHHHHHhcCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhHhhHHHHHHHHHhccccccchhHHH
Q psy12002 52 AWDLYLTMDTSP-ESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAK 130 (164)
Q Consensus 52 Aw~lyl~~e~~~-eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~pe~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~ 130 (164)
+..++.+..+.. .....+..++...+..|++-.|.+.|+-.-.+.+....... .+.++ .++..+.
T Consensus 92 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~----------~~la~~~ 157 (203)
T 3gw4_A 92 ERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA----IACAF----------RGLGDLA 157 (203)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH----HHHHH----------HHHHHHH
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH----HHHHH----------HHHHHHH
Confidence 444444444222 33344455566666677777776666553322111111111 11111 1245566
Q ss_pred HHhcCHHHHHHHHHHh
Q psy12002 131 CALGQYKEAEEMFLLV 146 (164)
Q Consensus 131 a~~g~~kEAEe~~l~I 146 (164)
...|++++|.+.+...
T Consensus 158 ~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 158 QQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHH
Confidence 6677777776665543
No 118
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=56.91 E-value=35 Score=24.52 Aligned_cols=34 Identities=12% Similarity=-0.153 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhh
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEG 104 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~G 104 (164)
.++..++..|++-.|.++|+-.-++||+ |+.|-.
T Consensus 75 ~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 75 GLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4556677799999999999998888876 555553
No 119
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=56.79 E-value=44 Score=25.32 Aligned_cols=30 Identities=7% Similarity=-0.169 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 69 LQLIANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 69 Lq~IandcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
+....+..++.|.|-.|...|+-.=++||+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~ 43 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHT 43 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 455677788889999999988886677776
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=55.37 E-value=43 Score=22.23 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=42.9
Q ss_pred hhccCc--chhhhhcccccccc---hhhhHHHHHHHHHH-----HHHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHH
Q psy12002 18 VVFRGG--EGALQVLPPLIDVI---PESRLNLVIYHLKQ-----AWDLYL---TMDTSPESLQILQLIANESYRRAKFWF 84 (164)
Q Consensus 18 ~vFr~G--~~Al~vLp~L~~~~---pear~NLvi~~l~~-----Aw~lyl---~~e~~~eaf~LLq~IandcY~~~~f~y 84 (164)
+.++.| +.|+..+...++.. +++..|+...+... |...|. +..+.. ...+-.++...+..|++-.
T Consensus 22 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~a~~~~~~~~~~~ 99 (166)
T 1a17_A 22 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--IKGYYRRAASNMALGKFRA 99 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHhccHHH
Confidence 334444 67777777666643 44555555444333 333332 222211 1223344555666888888
Q ss_pred HHHHHHHHHhcCCC
Q psy12002 85 AFKAFDMLERLEPL 98 (164)
Q Consensus 85 A~kaFd~le~lD~~ 98 (164)
|.+.|+-.-.++|.
T Consensus 100 A~~~~~~a~~~~p~ 113 (166)
T 1a17_A 100 ALRDYETVVKVKPH 113 (166)
T ss_dssp HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCC
Confidence 88888776666654
No 121
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=54.57 E-value=50 Score=22.77 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=17.5
Q ss_pred HHHHH-HHHHHHH--HHHHHHHHHHHhcCCC
Q psy12002 71 LIANE-SYRRAKF--WFAFKAFDMLERLEPL 98 (164)
Q Consensus 71 ~Iand-cY~~~~f--~yA~kaFd~le~lD~~ 98 (164)
.++.. ++..|.+ -.|.+.|+-.-+.+|+
T Consensus 83 ~la~~l~~~~~~~~~~~A~~~~~~al~~~p~ 113 (177)
T 2e2e_A 83 ALATVLYYQASQHMTAQTRAMIDKALALDSN 113 (177)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhCCC
Confidence 34444 4466776 7777777776666654
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=53.69 E-value=40 Score=26.13 Aligned_cols=81 Identities=14% Similarity=0.010 Sum_probs=47.5
Q ss_pred hhccCc--chhhhhccccccc---chhhhHHHHHHHHHH-----HHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHHHH
Q psy12002 18 VVFRGG--EGALQVLPPLIDV---IPESRLNLVIYHLKQ-----AWDLYLTMDT-SPESLQILQLIANESYRRAKFWFAF 86 (164)
Q Consensus 18 ~vFr~G--~~Al~vLp~L~~~---~pear~NLvi~~l~~-----Aw~lyl~~e~-~~eaf~LLq~IandcY~~~~f~yA~ 86 (164)
..|+.| +.|+..+-..+.. .+.+..|+..-+.+. |...|.+.-. .++....+-.++...+..|++-.|.
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 92 (281)
T 2c2l_A 13 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAI 92 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344544 5666666655543 456677776665544 5555544211 1122233345566677888998999
Q ss_pred HHHHHHHhcCCC
Q psy12002 87 KAFDMLERLEPL 98 (164)
Q Consensus 87 kaFd~le~lD~~ 98 (164)
+.|.-.-+++|+
T Consensus 93 ~~~~~al~l~p~ 104 (281)
T 2c2l_A 93 ANLQRAYSLAKE 104 (281)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhCcc
Confidence 888876666664
No 123
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=53.65 E-value=30 Score=23.16 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccch
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPLAEYW 102 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~pe~~ 102 (164)
+.++..|..|+|--|...+..+-..||. +-|
T Consensus 48 ~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 48 LIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 5577789999999999999998888887 544
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=53.08 E-value=61 Score=24.74 Aligned_cols=65 Identities=20% Similarity=0.085 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCccchhhhHhhHHHHHHHHHhccccccchhHHHHHhcCHHHHHHHHHHh
Q psy12002 68 ILQLIANESYRRAKFWFAFKAFDML-ERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLLV 146 (164)
Q Consensus 68 LLq~IandcY~~~~f~yA~kaFd~l-e~lD~~pe~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~a~~g~~kEAEe~~l~I 146 (164)
++..++...+..|++-.|.+.|.-. +..+..|+..+ -.+.++ .+++.++...|+|++|.+.+...
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~----------~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE----FDVKVR----------YNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHH----HHHHHH----------HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchh----HHHHHH----------HHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445566666677777777666552 22221111111 122222 24566777889999997776543
No 125
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=52.84 E-value=39 Score=20.99 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=40.2
Q ss_pred Ccchhhhhccccccc---chhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002 22 GGEGALQVLPPLIDV---IPESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRRAKFWFAFKAFD 90 (164)
Q Consensus 22 ~G~~Al~vLp~L~~~---~pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd 90 (164)
+-+.|++.+...++. .+.+..++...+... |..++.+ ..+.. ....-.++..++..|++-.|.+.|+
T Consensus 16 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~ 93 (136)
T 2fo7_A 16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--AEAWYNLGNAYYKQGDYDEAIEYYQ 93 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 335666666655543 344455555444333 3333322 22211 1222344555677889999999988
Q ss_pred HHHhcCCC
Q psy12002 91 MLERLEPL 98 (164)
Q Consensus 91 ~le~lD~~ 98 (164)
..-..+|.
T Consensus 94 ~~~~~~~~ 101 (136)
T 2fo7_A 94 KALELDPR 101 (136)
T ss_dssp HHHHHCTT
T ss_pred HHHHhCCC
Confidence 87666654
No 126
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=52.05 E-value=47 Score=29.14 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=23.9
Q ss_pred chhHHHHHhcCHHHHHHHHHHhhcccccCchhh
Q psy12002 125 NVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVY 157 (164)
Q Consensus 125 nf~qa~a~~g~~kEAEe~~l~Iq~~~~kn~~~y 157 (164)
.+.++....|.|++||.++..+.....+|....
T Consensus 440 ~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~ 472 (490)
T 3n71_A 440 MRMQTEMELRMFRQNEFMYHKMREAALNNQPMQ 472 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 345677888999999999999987776776543
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=51.11 E-value=79 Score=24.08 Aligned_cols=57 Identities=9% Similarity=0.077 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHH-----HHHHHHh-------c-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12002 40 SRLNLVIYHLKQ-----AWDLYLT-------M-DTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLE 96 (164)
Q Consensus 40 ar~NLvi~~l~~-----Aw~lyl~-------~-e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD 96 (164)
+-.||...|... |.++|.+ . ++......++--++..++..|++-.|.+.++-.-.+.
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 456676665443 4444433 3 3334455566777788888898888888777644443
No 128
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=50.90 E-value=28 Score=29.23 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=40.1
Q ss_pred chhhhhcccccccchh---hhHHHHHHHHHHHHHHHHhc-CCchhHHHHHH-------------HHHHHHHHHHHHHHHH
Q psy12002 24 EGALQVLPPLIDVIPE---SRLNLVIYHLKQAWDLYLTM-DTSPESLQILQ-------------LIANESYRRAKFWFAF 86 (164)
Q Consensus 24 ~~Al~vLp~L~~~~pe---ar~NLvi~~l~~Aw~lyl~~-e~~~eaf~LLq-------------~IandcY~~~~f~yA~ 86 (164)
+.|.++|..+.+..|. ++ .-++..+-++|....+- +...+||.+++ ++-|....+|++-.|.
T Consensus 153 d~A~k~l~~~~~~~~d~~~~~-d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe 231 (310)
T 3mv2_B 153 STASTIFDNYTNAIEDTVSGD-NEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHHHHHHHSCHHHHHH-HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCccccccc-hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHH
Confidence 5666777666666551 11 12233444455433332 34445555555 2333344588888888
Q ss_pred HHHHHHHhcCC
Q psy12002 87 KAFDMLERLEP 97 (164)
Q Consensus 87 kaFd~le~lD~ 97 (164)
+.++.+.+.+|
T Consensus 232 ~~L~~l~~~~p 242 (310)
T 3mv2_B 232 GIVELLLSDYY 242 (310)
T ss_dssp HHHHHHHSHHH
T ss_pred HHHHHHHHhcc
Confidence 88887777643
No 129
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=49.26 E-value=57 Score=21.92 Aligned_cols=28 Identities=11% Similarity=-0.087 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccchh
Q psy12002 76 SYRRAKFWFAFKAFDMLERLEPLAEYWE 103 (164)
Q Consensus 76 cY~~~~f~yA~kaFd~le~lD~~pe~~~ 103 (164)
...+|++-.|.+.|.-.=..+|+||...
T Consensus 93 ~~~~~~~~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 93 FQKQNDLSLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCHHHHH
Confidence 3345666666666665445666665543
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=48.81 E-value=67 Score=22.55 Aligned_cols=75 Identities=13% Similarity=-0.082 Sum_probs=44.6
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhHhhHHHHHHHHHhccccccchhHHHH
Q psy12002 52 AWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAKC 131 (164)
Q Consensus 52 Aw~lyl~~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~pe~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~a 131 (164)
|-..|.+.-+. .....-.++...+..|++-.|.+.|+..-+++|+. ... + .+++.++.
T Consensus 25 A~~~~~~a~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~--------~----------~~lg~~~~ 82 (213)
T 1hh8_A 25 ALDAFSAVQDP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL--AVA--------Y----------FQRGMLYY 82 (213)
T ss_dssp HHHHHHTSSSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHH--------H----------HHHHHHHH
T ss_pred HHHHHHHHcCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--hHH--------H----------HHHHHHHH
Confidence 55555554322 12344455666667778877877777766665432 111 1 12455677
Q ss_pred HhcCHHHHHHHHHHhhc
Q psy12002 132 ALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 132 ~~g~~kEAEe~~l~Iq~ 148 (164)
..|++++|.+.|...-.
T Consensus 83 ~~~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALI 99 (213)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHH
Confidence 78999999888876644
No 131
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=48.79 E-value=60 Score=27.33 Aligned_cols=28 Identities=14% Similarity=0.027 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
-++...+++|++-.|.+.|+-.-++||+
T Consensus 322 nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 322 NLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 4444455677777777777776666654
No 132
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.75 E-value=97 Score=24.41 Aligned_cols=94 Identities=16% Similarity=0.144 Sum_probs=49.6
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhHhhHHHHHHHHH--hccccc------
Q psy12002 52 AWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIM--AGKENR------ 123 (164)
Q Consensus 52 Aw~lyl~~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~pe~~~Gkrga~ag~F~~~~--~~~e~~------ 123 (164)
+-.+|.+.++.+++...++....-.=..+.-..+......++.+...++..+- ...++...+ .++...
T Consensus 61 l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 61 LGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDD----QIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHH----HHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHHHhCccHHHHH
Confidence 45677888888888777775544332333333344445556666655533322 222222221 111111
Q ss_pred --cchhHHHHHhcCHHHHHHHHHHhhcc
Q psy12002 124 --LNVPWAKCALGQYKEAEEMFLLVQNE 149 (164)
Q Consensus 124 --Dnf~qa~a~~g~~kEAEe~~l~Iq~~ 149 (164)
.+++.++-..|+|.+|.+++..+..+
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 12334556668899888887766554
No 133
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=48.34 E-value=25 Score=24.49 Aligned_cols=72 Identities=7% Similarity=-0.025 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhh---------hHhhHHHHHHHHHhccc-ccc---chhHHHHHhcCH
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEG---------KRGACAGLMQMIMAGKE-NRL---NVPWAKCALGQY 136 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~G---------krga~ag~F~~~~~~~e-~~D---nf~qa~a~~g~~ 136 (164)
.+++-.+.+|++-.|.+.|.-.-++||+ ++.|.. +-.-...+|...+.-.. +.+ +++.++...|++
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 115 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVT 115 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Confidence 4566677788888888888876677764 455542 22234444554443221 111 223466777999
Q ss_pred HHHHHH
Q psy12002 137 KEAEEM 142 (164)
Q Consensus 137 kEAEe~ 142 (164)
+||-+.
T Consensus 116 ~~aa~~ 121 (150)
T 4ga2_A 116 DGRAKY 121 (150)
T ss_dssp SSHHHH
T ss_pred HHHHHH
Confidence 876544
No 134
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=47.77 E-value=66 Score=27.41 Aligned_cols=29 Identities=10% Similarity=-0.030 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 70 QLIANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 70 q~IandcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
..++...+..|++-.|.+.|+..-++||+
T Consensus 44 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 72 (477)
T 1wao_1 44 GNRSLAYLRTECYGYALGDATRAIELDKK 72 (477)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 34455556677777777777766666554
No 135
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=46.03 E-value=88 Score=25.01 Aligned_cols=28 Identities=14% Similarity=-0.077 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy12002 72 IANESYRRAKFWFAFKAFDMLERLEPLA 99 (164)
Q Consensus 72 IandcY~~~~f~yA~kaFd~le~lD~~p 99 (164)
++......|.+..|.+.|.-.-+.+|+.
T Consensus 253 lg~~~~~~~~~~~A~~~~~~al~~~p~~ 280 (472)
T 4g1t_A 253 AAKFYRRKDEPDKAIELLKKALEYIPNN 280 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCCCh
Confidence 3444555777777777777766666653
No 136
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=45.83 E-value=74 Score=26.49 Aligned_cols=70 Identities=9% Similarity=0.116 Sum_probs=38.3
Q ss_pred HHHHHH-HHHHHHHHHHHHhcCCC-ccchhhhHhh---------HHHHHHHHHhcccccc-----chhHHHHHhcCHHHH
Q psy12002 76 SYRRAK-FWFAFKAFDMLERLEPL-AEYWEGKRGA---------CAGLMQMIMAGKENRL-----NVPWAKCALGQYKEA 139 (164)
Q Consensus 76 cY~~~~-f~yA~kaFd~le~lD~~-pe~~~Gkrga---------~ag~F~~~~~~~e~~D-----nf~qa~a~~g~~kEA 139 (164)
....|. +-.|.+.|+-.=++||+ ++.|..+..+ ...+|...+.-. |.+ +.++++..+|++.+|
T Consensus 141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHH
Confidence 445675 88888888877777775 4666653211 122233222211 111 123466677888888
Q ss_pred HHHHHHh
Q psy12002 140 EEMFLLV 146 (164)
Q Consensus 140 Ee~~l~I 146 (164)
.+.+...
T Consensus 220 l~~~~~a 226 (382)
T 2h6f_A 220 LQYVDQL 226 (382)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766554
No 137
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=44.09 E-value=74 Score=21.71 Aligned_cols=32 Identities=6% Similarity=-0.077 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 67 QILQLIANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 67 ~LLq~IandcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
.++-.++..++++|++--|.+.|+..=++||+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 95 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET 95 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Confidence 34445566677799999999988887777765
No 138
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=42.62 E-value=72 Score=27.05 Aligned_cols=82 Identities=16% Similarity=0.041 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchh---------hhHhhHHHHHHHHHhcccc----ccchhHHHHH
Q psy12002 67 QILQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWE---------GKRGACAGLMQMIMAGKEN----RLNVPWAKCA 132 (164)
Q Consensus 67 ~LLq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~---------Gkrga~ag~F~~~~~~~e~----~Dnf~qa~a~ 132 (164)
..+..++...+..|++-.|.+.|+-.-+++|+ ++.|. |+-.....+|...+.-..+ -.+++.++..
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 103 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED 103 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 44556677788899999999999988788775 34443 2222333444443332211 1123447777
Q ss_pred hcCHHHHHHHHHHhhc
Q psy12002 133 LGQYKEAEEMFLLVQN 148 (164)
Q Consensus 133 ~g~~kEAEe~~l~Iq~ 148 (164)
.|++++|.+.+...-.
T Consensus 104 ~g~~~~A~~~~~~al~ 119 (568)
T 2vsy_A 104 AGQAEAAAAAYTRAHQ 119 (568)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7999999998877644
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=42.23 E-value=84 Score=23.94 Aligned_cols=66 Identities=20% Similarity=0.044 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCccchhhhHhhHHHHHHHHHhccccccchhHHHHHhcCHHHHHHHHH
Q psy12002 66 LQILQLIANESYRRAKFWFAFKAFDMLE-RLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFL 144 (164)
Q Consensus 66 f~LLq~IandcY~~~~f~yA~kaFd~le-~lD~~pe~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~a~~g~~kEAEe~~l 144 (164)
...+..++...+..|++-.|.+.|+-.- ..+..|+.. . ..+.++. +++.++...|+|++|.+.+.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~-~---~~~~~~~----------nlg~~y~~~~~y~~Al~~~~ 220 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE-E---FDVKVRY----------NHAKALYLDSRYEESLYQVN 220 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH-H---HHHHHHH----------HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc-c---chHHHHH----------hHHHHHHHHhhHHHHHHHHH
Confidence 3445556666777888888887776532 212222211 1 1112222 35566677788888877665
Q ss_pred H
Q psy12002 145 L 145 (164)
Q Consensus 145 ~ 145 (164)
.
T Consensus 221 k 221 (293)
T 2qfc_A 221 K 221 (293)
T ss_dssp H
T ss_pred H
Confidence 4
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=41.46 E-value=84 Score=21.57 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=16.6
Q ss_pred hHHHHHhcCHHHHHHHHHHhhc
Q psy12002 127 PWAKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 127 ~qa~a~~g~~kEAEe~~l~Iq~ 148 (164)
+.++...|++++|.+.+..+-.
T Consensus 122 a~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 122 ASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHh
Confidence 3466677999999998876544
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=40.33 E-value=73 Score=20.56 Aligned_cols=30 Identities=13% Similarity=-0.053 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 69 LQLIANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 69 Lq~IandcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
+-.++...+.+|++-.|.+.|+..-++||+
T Consensus 41 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 70 (126)
T 3upv_A 41 YSNRAAALAKLMSFPEAIADCNKAIEKDPN 70 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 334555566788888888888877777765
No 142
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=39.40 E-value=86 Score=21.09 Aligned_cols=28 Identities=21% Similarity=0.064 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
.++...+.+|++-.|.+.|+..-++||+
T Consensus 52 ~~~~~~~~~~~~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 52 NRAACLTKLMEFQRALDDCDTCIRLDSK 79 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence 3444455567777777777665555544
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=37.94 E-value=60 Score=25.96 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=8.1
Q ss_pred HHHHhcCHHHHHHHHHH
Q psy12002 129 AKCALGQYKEAEEMFLL 145 (164)
Q Consensus 129 a~a~~g~~kEAEe~~l~ 145 (164)
++..+|++++|.+.|..
T Consensus 239 ~~~~~g~~~~A~~~~~~ 255 (336)
T 1p5q_A 239 AHLAVNDFELARADFQK 255 (336)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 44444555555444443
No 144
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=37.65 E-value=81 Score=20.30 Aligned_cols=21 Identities=10% Similarity=-0.097 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q psy12002 76 SYRRAKFWFAFKAFDMLERLE 96 (164)
Q Consensus 76 cY~~~~f~yA~kaFd~le~lD 96 (164)
++..|++--|.+.|...-+++
T Consensus 53 ~~~~~~~~~A~~~~~~al~~~ 73 (137)
T 3q49_B 53 YLKMQQPEQALADCRRALELD 73 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 333444444444444433333
No 145
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=37.40 E-value=64 Score=19.09 Aligned_cols=60 Identities=23% Similarity=0.336 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cchhhhHhhHHHHHHHHHhccccccchhHHHHHhcCHHHHHHHHHH
Q psy12002 67 QILQLIANESYRRAKFWFAFKAFDMLERLEPLA-EYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLL 145 (164)
Q Consensus 67 ~LLq~IandcY~~~~f~yA~kaFd~le~lD~~p-e~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~a~~g~~kEAEe~~l~ 145 (164)
..+-.++...+..|++-.|.+.|.-.-+++|+. +.| .+++.++...|++++|.+.+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------------------~~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW---------------------YNLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH---------------------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH---------------------HHHHHHHHHHhhHHHHHHHHHH
Confidence 444556777788888888888888766666543 111 1234455566788888777665
Q ss_pred hh
Q psy12002 146 VQ 147 (164)
Q Consensus 146 Iq 147 (164)
.-
T Consensus 69 a~ 70 (91)
T 1na3_A 69 AL 70 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 146
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=35.19 E-value=78 Score=19.42 Aligned_cols=32 Identities=13% Similarity=-0.087 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy12002 68 ILQLIANESYRRAKFWFAFKAFDMLERLEPLA 99 (164)
Q Consensus 68 LLq~IandcY~~~~f~yA~kaFd~le~lD~~p 99 (164)
.+-.++...+.+|++-.|.+.|+..-+++|+.
T Consensus 40 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 40 GYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 34456667788999999999999987888765
No 147
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=34.18 E-value=78 Score=19.09 Aligned_cols=82 Identities=11% Similarity=-0.070 Sum_probs=49.4
Q ss_pred hhccCc--chhhhhccccccc---chhhhHHHHHHHHHH-----HHHH---HHhcCCchhHHHHHHHHHHHHHHH-HHHH
Q psy12002 18 VVFRGG--EGALQVLPPLIDV---IPESRLNLVIYHLKQ-----AWDL---YLTMDTSPESLQILQLIANESYRR-AKFW 83 (164)
Q Consensus 18 ~vFr~G--~~Al~vLp~L~~~---~pear~NLvi~~l~~-----Aw~l---yl~~e~~~eaf~LLq~IandcY~~-~~f~ 83 (164)
+.++.| +.|...+...+.. .+.+..|+...+.+. |... .++..+.......+..++..++.. |++-
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 94 (112)
T 2kck_A 15 LQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEV 94 (112)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSH
T ss_pred HHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHH
Confidence 334444 5666666555443 456777777666554 3333 344444311233445566667778 8999
Q ss_pred HHHHHHHHHHhcCCCc
Q psy12002 84 FAFKAFDMLERLEPLA 99 (164)
Q Consensus 84 yA~kaFd~le~lD~~p 99 (164)
.|.+.|..+-..+|.+
T Consensus 95 ~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 95 EAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhhcccCC
Confidence 9999998887777764
No 148
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=33.67 E-value=1.6e+02 Score=22.55 Aligned_cols=124 Identities=8% Similarity=0.014 Sum_probs=65.2
Q ss_pred chhhhhcccccc-c---chhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002 24 EGALQVLPPLID-V---IPESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRRAKFWFAFKAFDM 91 (164)
Q Consensus 24 ~~Al~vLp~L~~-~---~pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~ 91 (164)
+.|..++..-+. . .+.+..++..++.+. |-..|-+ ..+..... +.-..++-....|.+-.|.+.|+-
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL-VYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHH-HHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccH-HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 356655554444 2 345677777776554 4444443 33322211 333344555668888888888887
Q ss_pred HHhcCCC-ccchhh----------hHhhHHHHHHHHHhccccccch----hHHHHHhcCHHHHHHHHHHhhc
Q psy12002 92 LERLEPL-AEYWEG----------KRGACAGLMQMIMAGKENRLNV----PWAKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 92 le~lD~~-pe~~~G----------krga~ag~F~~~~~~~e~~Dnf----~qa~a~~g~~kEAEe~~l~Iq~ 148 (164)
.-+++|. ++.|-| +-.....+|...+....+...+ ...+...|++.+|..+|...-.
T Consensus 160 a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666553 234432 2222334444433322111111 2245555899999888876654
No 149
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=33.11 E-value=1.3e+02 Score=25.01 Aligned_cols=59 Identities=14% Similarity=0.219 Sum_probs=35.8
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHH--------H-HHHHHHHHHHH-HhcCCC-ccchhhhHhhHH
Q psy12002 52 AWDLYLTMDTSPESLQILQLIANESYRRA--------K-FWFAFKAFDML-ERLEPL-AEYWEGKRGACA 110 (164)
Q Consensus 52 Aw~lyl~~e~~~eaf~LLq~IandcY~~~--------~-f~yA~kaFd~l-e~lD~~-pe~~~Gkrga~a 110 (164)
|.+.+.+.+...+.-..+..++.-....| . +-.|.+.|+.+ .++||. ++||..+..+..
T Consensus 295 a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 295 LLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 55555555333334444444554444453 2 57788888888 788987 599998653333
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=32.96 E-value=83 Score=19.07 Aligned_cols=28 Identities=14% Similarity=-0.098 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
.++...+..|++-.|.+.|+..-+++|+
T Consensus 77 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 77 RKAAALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 3444455566666677666665555543
No 151
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=32.94 E-value=1.1e+02 Score=23.71 Aligned_cols=49 Identities=12% Similarity=0.193 Sum_probs=30.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHhcCCchhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12002 37 IPESRLNLVIYHLKQAWDLYLTMDTSPESLQILQ---------LIANESYRRAKFWFAFKAFDMLERLE 96 (164)
Q Consensus 37 ~pear~NLvi~~l~~Aw~lyl~~e~~~eaf~LLq---------~IandcY~~~~f~yA~kaFd~le~lD 96 (164)
.|+.|++|.| +.++-+.|+.+.+ -++..+-..|++-.|.++|.-++..+
T Consensus 7 D~~~rF~LAL-----------~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~ 64 (177)
T 3mkq_B 7 DPHIRFDLAL-----------EYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFD 64 (177)
T ss_dssp CHHHHHHHHH-----------HTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH
T ss_pred ChHHHHHHHH-----------hcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH
Confidence 4566665554 4444444444444 45556667888888888888765544
No 152
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=32.17 E-value=2.1e+02 Score=23.38 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=17.5
Q ss_pred hHHHHHhcCHHHHHHHHHHhhc
Q psy12002 127 PWAKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 127 ~qa~a~~g~~kEAEe~~l~Iq~ 148 (164)
+.++..+|++++|.+.|...-.
T Consensus 314 g~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 314 AQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 4578888999999998877644
No 153
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=31.80 E-value=1.1e+02 Score=20.23 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 74 NESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 74 ndcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
......|++-.|.++|+-.-++||+
T Consensus 59 ~~~~~~g~~~~A~~~~~~al~l~P~ 83 (121)
T 1hxi_A 59 LTQAENEKDGLAIIALNHARMLDPK 83 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3345566666777777666566653
No 154
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=31.16 E-value=8.3 Score=34.37 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12002 70 QLIANESYRRAKFWFAFKAFDML 92 (164)
Q Consensus 70 q~IandcY~~~~f~yA~kaFd~l 92 (164)
+.|.+.||..|.+..|.+.|+-.
T Consensus 126 ~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 126 QQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp -----------CTTTHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh
Confidence 35555566666666666666633
No 155
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=30.76 E-value=1.6e+02 Score=21.64 Aligned_cols=27 Identities=15% Similarity=0.063 Sum_probs=15.9
Q ss_pred chhhhhcccccc-cchhhhHHHHHHHHH
Q psy12002 24 EGALQVLPPLID-VIPESRLNLVIYHLK 50 (164)
Q Consensus 24 ~~Al~vLp~L~~-~~pear~NLvi~~l~ 50 (164)
+.|++.+...++ ..|.+..||...+..
T Consensus 23 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 50 (273)
T 1ouv_A 23 TQAKKYFEKACDLKENSGCFNLGVLYYQ 50 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 455555544333 346677777776665
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=30.36 E-value=1.4e+02 Score=21.01 Aligned_cols=29 Identities=10% Similarity=-0.097 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPLA 99 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~p 99 (164)
.++...+..|++-.|.+.|...-+++|+.
T Consensus 127 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 127 KLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 45555777899999999998877777653
No 157
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=30.16 E-value=2.3e+02 Score=23.20 Aligned_cols=111 Identities=8% Similarity=-0.020 Sum_probs=59.1
Q ss_pred hhhhHHHHHHHHHH-----HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC----ccchhh---
Q psy12002 38 PESRLNLVIYHLKQ-----AWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLE-PL----AEYWEG--- 104 (164)
Q Consensus 38 pear~NLvi~~l~~-----Aw~lyl~~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD-~~----pe~~~G--- 104 (164)
.++++.++..++.. |.+++-+.....+-....-..+.-++..+.+--|.+.|+-..+.. +. .-++-|
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHH
Confidence 34566666555444 666665554333211133455556677777777777776443321 10 123332
Q ss_pred ----hHhhHHHHHHHHHhccc-ccc------chhHHHHHhcCHHHHHHHHHHhhc
Q psy12002 105 ----KRGACAGLMQMIMAGKE-NRL------NVPWAKCALGQYKEAEEMFLLVQN 148 (164)
Q Consensus 105 ----krga~ag~F~~~~~~~e-~~D------nf~qa~a~~g~~kEAEe~~l~Iq~ 148 (164)
+-.-...+|..++.|.. |.. +...++..+|+.+||.+.|..+..
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 23344456666555543 221 113377777999999998876653
No 158
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=29.79 E-value=88 Score=23.49 Aligned_cols=29 Identities=17% Similarity=0.175 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPLA 99 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~p 99 (164)
.+|=.+|+.|.|-.|.++-+.+=+.+|+.
T Consensus 83 yLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 83 YLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 44455888999999999998886666554
No 159
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=28.28 E-value=75 Score=24.18 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=39.0
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhcCCch--hHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy12002 35 DVIPESRLNLVIYHLKQAWDLYLTMDTSP--ESLQILQ---------------LIANESYRRAKFWFAFKAFDMLERLEP 97 (164)
Q Consensus 35 ~~~pear~NLvi~~l~~Aw~lyl~~e~~~--eaf~LLq---------------~IandcY~~~~f~yA~kaFd~le~lD~ 97 (164)
.+-|+++.|+. |-|--.....+ .+..||. .+|=.+|+.|+|-.|.+.-+.+=+.+|
T Consensus 36 ~vs~~t~F~YA-------w~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYA-------WGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHH-------HHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHH-------HHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 46788888874 55444433332 3444554 445558999999999999999877777
Q ss_pred Cc
Q psy12002 98 LA 99 (164)
Q Consensus 98 ~p 99 (164)
+.
T Consensus 109 ~n 110 (144)
T 1y8m_A 109 NN 110 (144)
T ss_dssp CC
T ss_pred Cc
Confidence 65
No 160
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=28.27 E-value=1.1e+02 Score=19.51 Aligned_cols=61 Identities=10% Similarity=-0.128 Sum_probs=33.1
Q ss_pred chhhhHHHHHHHHHH-----HHHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy12002 37 IPESRLNLVIYHLKQ-----AWDLYL---TMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLA 99 (164)
Q Consensus 37 ~pear~NLvi~~l~~-----Aw~lyl---~~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~p 99 (164)
.|.+..||...+.+. |...|. +.++.. ....-.++......|++--|.+.|...-.++|..
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY--SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 456677776655443 333332 222221 1122234555666888888888888766666543
No 161
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=28.24 E-value=1.2e+02 Score=19.47 Aligned_cols=29 Identities=7% Similarity=-0.058 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy12002 71 LIANESYRRAKFWFAFKAFDMLERLEPLA 99 (164)
Q Consensus 71 ~IandcY~~~~f~yA~kaFd~le~lD~~p 99 (164)
.++...+..|++-.|.+.|...-..+|+.
T Consensus 66 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 66 FYAMVLYNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 45566777999999999888765665544
No 162
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=27.96 E-value=43 Score=26.90 Aligned_cols=22 Identities=36% Similarity=0.317 Sum_probs=16.0
Q ss_pred hhHHHHHhcCHHHHHHHHHHhh
Q psy12002 126 VPWAKCALGQYKEAEEMFLLVQ 147 (164)
Q Consensus 126 f~qa~a~~g~~kEAEe~~l~Iq 147 (164)
.+.++..+|+|.+|++.|...-
T Consensus 270 lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 270 RGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3456777788888888887764
No 163
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=27.90 E-value=1.1e+02 Score=19.04 Aligned_cols=24 Identities=8% Similarity=0.044 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q psy12002 74 NESYRRAKFWFAFKAFDMLERLEP 97 (164)
Q Consensus 74 ndcY~~~~f~yA~kaFd~le~lD~ 97 (164)
...+..|++-.|.+.|+..-+++|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCC
Confidence 334445555556665555444443
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=27.47 E-value=1.5e+02 Score=20.16 Aligned_cols=27 Identities=15% Similarity=0.036 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 72 IANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 72 IandcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
++...+..|++-.|.+.|...-+++|+
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 344455677777777777765555554
No 165
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=27.46 E-value=2.8e+02 Score=28.82 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=34.2
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--cchhh
Q psy12002 52 AWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLA--EYWEG 104 (164)
Q Consensus 52 Aw~lyl~~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~p--e~~~G 104 (164)
|.+.|.|.++.+.=+. +++.|-+.|.|-.|-+.+.+-...+++| |++.|
T Consensus 1124 AIdsYiKAdD~say~e----Va~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~La 1174 (1630)
T 1xi4_A 1124 AIDSYIKADDPSSYME----VVQAANTSGNWEELVKYLQMARKKARESYVETELI 1174 (1630)
T ss_pred HHHHHHhcCChHHHHH----HHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHH
Confidence 8888888765443333 6788888888888888888766666553 55554
No 166
>1bde_A VPR protein; AIDS, HIV, viral protein, VPR fragment, helix; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1dsj_A
Probab=26.79 E-value=37 Score=20.23 Aligned_cols=17 Identities=24% Similarity=0.642 Sum_probs=12.9
Q ss_pred cchhhhHhhHHHHHHHHH
Q psy12002 100 EYWEGKRGACAGLMQMIM 117 (164)
Q Consensus 100 e~~~Gkrga~ag~F~~~~ 117 (164)
|+|+|-+ +++...|+.+
T Consensus 4 DTw~Gve-aiiriLQq~L 20 (35)
T 1bde_A 4 DTWAGVE-AIIRILQQLL 20 (35)
T ss_dssp HHHHHHH-HHHHHHHHHH
T ss_pred ccHHHHH-HHHHHHHHHH
Confidence 8999976 8887777643
No 167
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=25.82 E-value=2.2e+02 Score=21.54 Aligned_cols=59 Identities=8% Similarity=0.066 Sum_probs=36.3
Q ss_pred hhhhHHHHHHHHHH-----HHHHHHh-------cCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12002 38 PESRLNLVIYHLKQ-----AWDLYLT-------MDTSPE-SLQILQLIANESYRRAKFWFAFKAFDMLERLE 96 (164)
Q Consensus 38 pear~NLvi~~l~~-----Aw~lyl~-------~e~~~e-af~LLq~IandcY~~~~f~yA~kaFd~le~lD 96 (164)
..+-.|+...|... |.++|.+ ..+... ...++-.++..++..|++-.|.+.|+-.-.+.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34566776666554 4444443 333222 23566677888888999999888887644443
No 168
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=25.77 E-value=1.2e+02 Score=18.49 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy12002 72 IANESYRRAKFWFAFKAFDMLERLEP 97 (164)
Q Consensus 72 IandcY~~~~f~yA~kaFd~le~lD~ 97 (164)
++..++..|++-.|.+.|+..-+.+|
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 34445556666666666655544444
No 169
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=25.40 E-value=2.5e+02 Score=22.22 Aligned_cols=21 Identities=10% Similarity=-0.097 Sum_probs=8.3
Q ss_pred hHHHHHhcCHHHHHHHHHHhh
Q psy12002 127 PWAKCALGQYKEAEEMFLLVQ 147 (164)
Q Consensus 127 ~qa~a~~g~~kEAEe~~l~Iq 147 (164)
+.++...|++++|.+.+...=
T Consensus 437 G~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp HHHHHHHHHCC----------
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 447777799999988876543
No 170
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=25.02 E-value=1.1e+02 Score=27.25 Aligned_cols=80 Identities=9% Similarity=-0.019 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhh---------hHhhHHHHHHHHHhcccc----ccchhHHHHH
Q psy12002 67 QILQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEG---------KRGACAGLMQMIMAGKEN----RLNVPWAKCA 132 (164)
Q Consensus 67 ~LLq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~G---------krga~ag~F~~~~~~~e~----~Dnf~qa~a~ 132 (164)
..+...+...+..|++-.|.+.|+-.-++||+ ++.|-. +-......|...+.-..+ -.+++.++..
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~ 513 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL 513 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34445566678899999999999987777764 344432 222333444443332211 1122446667
Q ss_pred hcCHHHHHHHHHHhh
Q psy12002 133 LGQYKEAEEMFLLVQ 147 (164)
Q Consensus 133 ~g~~kEAEe~~l~Iq 147 (164)
.|++++ ++.+...-
T Consensus 514 ~g~~~~-~~~~~~al 527 (681)
T 2pzi_A 514 AGNTDE-HKFYQTVW 527 (681)
T ss_dssp HTCCCT-TCHHHHHH
T ss_pred cCChHH-HHHHHHHH
Confidence 788888 77776653
No 171
>3msv_A Nuclear import adaptor, NRO1; helix repeats, heat repeats, protein binding; 2.18A {Schizosaccharomyces pombe}
Probab=24.91 E-value=68 Score=28.02 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=27.2
Q ss_pred HHHHHHHHH---HhcCCchhHHHHHHHHHHHHHH
Q psy12002 48 HLKQAWDLY---LTMDTSPESLQILQLIANESYR 78 (164)
Q Consensus 48 ~l~~Aw~ly---l~~e~~~eaf~LLq~IandcY~ 78 (164)
.|+-+|..| ++.+..++...||-||.++|=+
T Consensus 68 QLkgLwktyrekl~Sdri~dnElLLNGIIHECDR 101 (393)
T 3msv_A 68 QLWGLYEMSREKLENDDIDASVSLVFGTIHEADR 101 (393)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccchHHhcchHHHHHH
Confidence 445599999 8889888999999999999976
No 172
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=24.05 E-value=2.9e+02 Score=22.45 Aligned_cols=30 Identities=10% Similarity=0.019 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 69 LQLIANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 69 Lq~IandcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
+-.++..+++.|++-.|.+.++-.-++||+
T Consensus 276 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 276 VLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 334455567789999999999887777765
No 173
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=23.47 E-value=2.2e+02 Score=20.83 Aligned_cols=27 Identities=11% Similarity=-0.106 Sum_probs=16.7
Q ss_pred chhhhhcccccc-cchhhhHHHHHHHHH
Q psy12002 24 EGALQVLPPLID-VIPESRLNLVIYHLK 50 (164)
Q Consensus 24 ~~Al~vLp~L~~-~~pear~NLvi~~l~ 50 (164)
+.|+..+....+ ..|++..||...+..
T Consensus 59 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 59 KKAASFYAKACDLNYSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 556555554433 267788888776665
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=23.06 E-value=2.3e+02 Score=23.64 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=8.2
Q ss_pred HHHHhcCHHHHHHHHHHh
Q psy12002 129 AKCALGQYKEAEEMFLLV 146 (164)
Q Consensus 129 a~a~~g~~kEAEe~~l~I 146 (164)
++..+|+|.+|.+.|...
T Consensus 360 a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 360 AQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 444445555554444433
No 175
>1vib_A Neurotoxin B-IV; hydroxylation; HET: HYP; NMR {Cerebratulus lacteus} SCOP: g.2.2.1
Probab=22.51 E-value=30 Score=22.14 Aligned_cols=13 Identities=54% Similarity=1.140 Sum_probs=10.5
Q ss_pred cchhhhHhhHHHH
Q psy12002 100 EYWEGKRGACAGL 112 (164)
Q Consensus 100 e~~~Gkrga~ag~ 112 (164)
--|.||||-|+.-
T Consensus 28 gkwagkrgkcaah 40 (55)
T 1vib_A 28 GKWAGKRGKCAAH 40 (55)
T ss_dssp GGGTTTHHHHHHH
T ss_pred ceeccccCcchhh
Confidence 5799999988753
No 176
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=22.11 E-value=85 Score=21.71 Aligned_cols=41 Identities=12% Similarity=0.078 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC--ccchhhhHhhHHHHHHH
Q psy12002 75 ESYRRAKFWFAFKAFDMLERLEPL--AEYWEGKRGACAGLMQM 115 (164)
Q Consensus 75 dcY~~~~f~yA~kaFd~le~lD~~--pe~~~Gkrga~ag~F~~ 115 (164)
.+|-.|+||.|=..+..+=+-.++ .++|+|..+.++|+.-.
T Consensus 10 ~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~ 52 (94)
T 2cwy_A 10 GLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQR 52 (94)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHH
Confidence 568889999988888876555544 48999999999998883
No 177
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=21.62 E-value=1.5e+02 Score=18.06 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy12002 68 ILQLIANESYRRAKFWFAFKAFDMLERLEPLA 99 (164)
Q Consensus 68 LLq~IandcY~~~~f~yA~kaFd~le~lD~~p 99 (164)
.+-.++...+.+|++-.|.+.|+-.-++||+.
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 34445555667888888888888877777654
No 178
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.47 E-value=61 Score=26.38 Aligned_cols=19 Identities=42% Similarity=0.565 Sum_probs=0.0
Q ss_pred HHHHHh---cCHHHHHHHHHHh
Q psy12002 128 WAKCAL---GQYKEAEEMFLLV 146 (164)
Q Consensus 128 qa~a~~---g~~kEAEe~~l~I 146 (164)
||.+.+ |++++||++|..+
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERI 143 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHH
No 179
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=21.05 E-value=2.3e+02 Score=20.09 Aligned_cols=27 Identities=4% Similarity=-0.085 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002 72 IANESYRRAKFWFAFKAFDMLERLEPL 98 (164)
Q Consensus 72 IandcY~~~~f~yA~kaFd~le~lD~~ 98 (164)
++...+..|++-.|.+.|.-.-+++|+
T Consensus 123 ~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 123 EGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 334455578888888888877666665
No 180
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=20.89 E-value=2.8e+02 Score=21.10 Aligned_cols=122 Identities=12% Similarity=0.060 Sum_probs=67.5
Q ss_pred hhhhhcccccc---cchhhhHHHHHHHH-------------------HHHHHHHHhcCC--chhHHHHHHHHHHHHHHHH
Q psy12002 25 GALQVLPPLID---VIPESRLNLVIYHL-------------------KQAWDLYLTMDT--SPESLQILQLIANESYRRA 80 (164)
Q Consensus 25 ~Al~vLp~L~~---~~pear~NLvi~~l-------------------~~Aw~lyl~~e~--~~eaf~LLq~IandcY~~~ 80 (164)
.|+.++-..+. ..|++-+|+..+.. .+|-..|.+.-. .++...+-...+.-....|
T Consensus 34 ~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~ 113 (308)
T 2ond_A 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 113 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 34444444433 45778888887765 235555544322 1222223333444455688
Q ss_pred HHHHHHHHHHHHHhcCCC-cc-chhh---------hHhhHHHHHHHHHhccccccch--hHHHHH---hcCHHHHHHHHH
Q psy12002 81 KFWFAFKAFDMLERLEPL-AE-YWEG---------KRGACAGLMQMIMAGKENRLNV--PWAKCA---LGQYKEAEEMFL 144 (164)
Q Consensus 81 ~f~yA~kaFd~le~lD~~-pe-~~~G---------krga~ag~F~~~~~~~e~~Dnf--~qa~a~---~g~~kEAEe~~l 144 (164)
.+--|.+.|+-.=+++|. ++ .|.. +-..+..+|...+....+.... ..+... .|++++|.++|.
T Consensus 114 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~ 193 (308)
T 2ond_A 114 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFE 193 (308)
T ss_dssp CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888999999887778875 55 5653 2334455666544432211111 123332 599999998886
Q ss_pred Hh
Q psy12002 145 LV 146 (164)
Q Consensus 145 ~I 146 (164)
..
T Consensus 194 ~a 195 (308)
T 2ond_A 194 LG 195 (308)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 181
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=20.81 E-value=23 Score=20.01 Aligned_cols=12 Identities=42% Similarity=0.354 Sum_probs=9.0
Q ss_pred cchhhhHhhHHH
Q psy12002 100 EYWEGKRGACAG 111 (164)
Q Consensus 100 e~~~Gkrga~ag 111 (164)
-.|-|.|||++=
T Consensus 7 ~~~~GLRGAvaf 18 (28)
T 2kbv_A 7 IAYGGLRGAIAF 18 (28)
T ss_dssp TTTTSSCHHHHH
T ss_pred EEeecchHHHHH
Confidence 357899998763
Done!