RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12002
         (164 letters)



>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
           aminotransferase ArgD {Thermus thermophilus [TaxId:
           274]}
          Length = 387

 Score = 25.1 bits (54), Expect = 4.4
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 14  KHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQA 52
           +H ++  + G   ++ LPPL+  I +  L  V+  ++  
Sbjct: 349 EHRVLALQAGPTVIRFLPPLV--IEKEDLERVVEAVRAV 385


>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
           {Pseudomonas cepacia [TaxId: 292]}
          Length = 431

 Score = 24.3 bits (51), Expect = 9.2
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 13  IKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQA 52
           +  N+V   G  G  ++ PPL   + E  ++L +  L QA
Sbjct: 389 LSMNIVQLPGMGGVFRIAPPLT--VSEDEIDLGLSLLGQA 426


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 611,478
Number of extensions: 26366
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 10
Length of query: 164
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 85
Effective length of database: 1,322,926
Effective search space: 112448710
Effective search space used: 112448710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (22.7 bits)