BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12003
(61 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P09077|SCR_DROME Homeotic protein Sex combs reduced OS=Drosophila melanogaster
GN=Scr PE=1 SV=5
Length = 417
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 42/57 (73%), Gaps = 11/57 (19%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVIPYHYHMSQPYGNPY--------QFTHLAT 61
TERQIKIWFQNRRMKWKKEHKMASMN++PYH PYG+PY QF HL+
Sbjct: 364 TERQIKIWFQNRRMKWKKEHKMASMNIVPYHM---GPYGHPYHQFDIHPSQFAHLSA 417
>sp|P15859|SCR_APIME Homeobox protein H55 (Fragment) OS=Apis mellifera PE=3 SV=1
Length = 86
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/42 (85%), Positives = 39/42 (92%), Gaps = 3/42 (7%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVIPYHYHMSQPYGNPY 54
TERQIKIWFQNRRMKWKKEHKMASMN++P YHMS PYG+PY
Sbjct: 48 TERQIKIWFQNRRMKWKKEHKMASMNIVP--YHMS-PYGHPY 86
>sp|Q9IA11|HXD5_HETFR Homeobox protein Hox-D5 OS=Heterodontus francisci GN=HOXD5 PE=3
SV=1
Length = 252
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVIP 41
TERQIKIWFQNRRMKWKK++K+ S+NV P
Sbjct: 217 TERQIKIWFQNRRMKWKKDNKLKSINVSP 245
>sp|Q1KKX0|HXB5B_TAKRU Homeobox protein Hox-B5b OS=Takifugu rubripes GN=hoxb5b PE=3 SV=1
Length = 280
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 27/28 (96%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVI 40
+ERQIKIWFQNRRMKWKK++K+ SM+++
Sbjct: 245 SERQIKIWFQNRRMKWKKDNKLKSMSLV 272
>sp|Q9PWD3|HXA5_MORSA Homeobox protein Hox-A5 OS=Morone saxatilis GN=hoxa5 PE=3 SV=1
Length = 281
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 26/27 (96%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNV 39
+ERQIKIWFQNRRMKWKK++K+ SMN+
Sbjct: 245 SERQIKIWFQNRRMKWKKDNKLKSMNM 271
>sp|Q9YGT6|HXA5A_DANRE Homeobox protein Hox-A5a OS=Danio rerio GN=hoxa5a PE=2 SV=2
Length = 265
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 26/28 (92%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVI 40
+ERQIKIWFQNRRMKWKK++K+ SMN+
Sbjct: 230 SERQIKIWFQNRRMKWKKDNKLKSMNMA 257
>sp|Q1KL14|HXA5A_TAKRU Homeobox protein Hox-A5a OS=Takifugu rubripes GN=hoxa5a PE=3 SV=1
Length = 274
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 26/27 (96%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNV 39
+ERQIKIWFQNRRMKWKK++K+ SMN+
Sbjct: 238 SERQIKIWFQNRRMKWKKDNKLKSMNM 264
>sp|Q1KKX9|HXB5A_TAKRU Homeobox protein Hox-B5a OS=Takifugu rubripes GN=hoxb5a PE=3 SV=1
Length = 319
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/27 (77%), Positives = 26/27 (96%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNV 39
TERQIKIWFQNRRMKWKK++K+ SM++
Sbjct: 284 TERQIKIWFQNRRMKWKKDNKLKSMSL 310
>sp|Q9IA23|HXA5_HETFR Homeobox protein Hox-A5 OS=Heterodontus francisci GN=HOXA5 PE=3
SV=1
Length = 275
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 26/28 (92%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVI 40
TERQIKIWFQNRRMKWKK++K+ SM++
Sbjct: 240 TERQIKIWFQNRRMKWKKDNKLKSMSMA 267
>sp|P24061|HXA7_COTJA Homeobox protein Hox-A7 OS=Coturnix coturnix japonica GN=HOXA7 PE=2
SV=1
Length = 242
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/27 (81%), Positives = 23/27 (85%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNV 39
TERQIKIWFQNRRMKWKKEHK S +
Sbjct: 169 TERQIKIWFQNRRMKWKKEHKEESSST 195
>sp|Q90VZ9|HXA7_CHICK Homeobox protein Hox-A7 OS=Gallus gallus GN=HOXA7 PE=2 SV=1
Length = 219
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/27 (81%), Positives = 23/27 (85%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNV 39
TERQIKIWFQNRRMKWKKEHK S +
Sbjct: 169 TERQIKIWFQNRRMKWKKEHKEESSST 195
>sp|P02830|HXA7_MOUSE Homeobox protein Hox-A7 OS=Mus musculus GN=Hoxa7 PE=2 SV=2
Length = 229
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 13 TERQIKIWFQNRRMKWKKEHK 33
TERQIKIWFQNRRMKWKKEHK
Sbjct: 169 TERQIKIWFQNRRMKWKKEHK 189
>sp|P09013|HXB5B_DANRE Homeobox protein Hox-B5b OS=Danio rerio GN=hoxb5b PE=2 SV=2
Length = 276
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 26/28 (92%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVI 40
+ERQIKIWFQNRRMKWKK++K+ SM++
Sbjct: 241 SERQIKIWFQNRRMKWKKDNKLKSMSLA 268
>sp|P09019|HXB5_XENLA Homeobox protein Hox-B5 (Fragment) OS=Xenopus laevis GN=hoxb5 PE=2
SV=1
Length = 230
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 26/28 (92%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVI 40
+ERQIKIWFQNRRMKWKK++K+ SM++
Sbjct: 195 SERQIKIWFQNRRMKWKKDNKLKSMSLA 222
>sp|P09071|HXA7_XENLA Homeobox protein Hox-A7 OS=Xenopus laevis GN=hoxa7 PE=2 SV=1
Length = 209
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/24 (91%), Positives = 22/24 (91%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMAS 36
TERQIKIWFQNRRMKWKKEHK S
Sbjct: 162 TERQIKIWFQNRRMKWKKEHKEES 185
>sp|A2T7F3|HXA7_PANTR Homeobox protein Hox-A7 OS=Pan troglodytes GN=HOXA7 PE=3 SV=1
Length = 230
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 13 TERQIKIWFQNRRMKWKKEHK 33
TERQIKIWFQNRRMKWKKEHK
Sbjct: 170 TERQIKIWFQNRRMKWKKEHK 190
>sp|P09014|HXB5A_DANRE Homeobox protein Hox-B5a OS=Danio rerio GN=hoxb5a PE=2 SV=2
Length = 275
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 26/28 (92%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVI 40
+ERQIKIWFQNRRMKWKK++K+ SM++
Sbjct: 240 SERQIKIWFQNRRMKWKKDNKLKSMSLA 267
>sp|A2D5Y4|HXA5_LEMCA Homeobox protein Hox-A5 OS=Lemur catta GN=HOXA5 PE=3 SV=1
Length = 270
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 26/28 (92%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVI 40
+ERQIKIWFQNRRMKWKK++K+ SM++
Sbjct: 235 SERQIKIWFQNRRMKWKKDNKLKSMSMA 262
>sp|P09067|HXB5_HUMAN Homeobox protein Hox-B5 OS=Homo sapiens GN=HOXB5 PE=2 SV=3
Length = 269
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 26/28 (92%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVI 40
+ERQIKIWFQNRRMKWKK++K+ SM++
Sbjct: 234 SERQIKIWFQNRRMKWKKDNKLKSMSLA 261
>sp|P31268|HXA7_HUMAN Homeobox protein Hox-A7 OS=Homo sapiens GN=HOXA7 PE=2 SV=3
Length = 230
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 13 TERQIKIWFQNRRMKWKKEHK 33
TERQIKIWFQNRRMKWKKEHK
Sbjct: 170 TERQIKIWFQNRRMKWKKEHK 190
>sp|P09079|HXB5_MOUSE Homeobox protein Hox-B5 OS=Mus musculus GN=Hoxb5 PE=2 SV=3
Length = 269
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 26/28 (92%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVI 40
+ERQIKIWFQNRRMKWKK++K+ SM++
Sbjct: 234 SERQIKIWFQNRRMKWKKDNKLKSMSLA 261
>sp|A2D5K9|HXA5_LAGLA Homeobox protein Hox-A5 OS=Lagothrix lagotricha GN=HOXA5 PE=3 SV=1
Length = 270
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 26/28 (92%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVI 40
+ERQIKIWFQNRRMKWKK++K+ SM++
Sbjct: 235 SERQIKIWFQNRRMKWKKDNKLKSMSMA 262
>sp|P20719|HXA5_HUMAN Homeobox protein Hox-A5 OS=Homo sapiens GN=HOXA5 PE=1 SV=2
Length = 270
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 26/28 (92%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVI 40
+ERQIKIWFQNRRMKWKK++K+ SM++
Sbjct: 235 SERQIKIWFQNRRMKWKKDNKLKSMSMA 262
>sp|Q2HJ67|HXA5_BOVIN Homeobox protein Hox-A5 OS=Bos taurus GN=HOXA5 PE=2 SV=1
Length = 270
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 26/28 (92%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVI 40
+ERQIKIWFQNRRMKWKK++K+ SM++
Sbjct: 235 SERQIKIWFQNRRMKWKKDNKLKSMSMA 262
>sp|P09021|HXA5_MOUSE Homeobox protein Hox-A5 OS=Mus musculus GN=Hoxa5 PE=1 SV=1
Length = 270
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 26/28 (92%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVI 40
+ERQIKIWFQNRRMKWKK++K+ SM++
Sbjct: 235 SERQIKIWFQNRRMKWKKDNKLKSMSMA 262
>sp|P09023|HXB6_MOUSE Homeobox protein Hox-B6 OS=Mus musculus GN=Hoxb6 PE=2 SV=2
Length = 224
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 24/28 (85%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVI 40
TERQIKIWFQNRRMKWKKE K+ S + +
Sbjct: 186 TERQIKIWFQNRRMKWKKESKLLSASQL 213
>sp|Q6B3N0|HXA5_CHICK Homeobox protein Hox-A5 OS=Gallus gallus GN=HOXA5 PE=2 SV=1
Length = 270
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 26/28 (92%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVI 40
+ERQIKIWFQNRRMKWKK++K+ SM++
Sbjct: 235 SERQIKIWFQNRRMKWKKDNKLKSMSMA 262
>sp|P17509|HXB6_HUMAN Homeobox protein Hox-B6 OS=Homo sapiens GN=HOXB6 PE=1 SV=4
Length = 224
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 24/28 (85%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVI 40
TERQIKIWFQNRRMKWKKE K+ S + +
Sbjct: 186 TERQIKIWFQNRRMKWKKESKLLSASQL 213
>sp|P09629|HXB7_HUMAN Homeobox protein Hox-B7 OS=Homo sapiens GN=HOXB7 PE=1 SV=4
Length = 217
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMAS 36
TERQIKIWFQNRRMKWKKE+K A
Sbjct: 177 TERQIKIWFQNRRMKWKKENKTAG 200
>sp|A1YFA5|HXB7_GORGO Homeobox protein Hox-B7 OS=Gorilla gorilla gorilla GN=HOXB7 PE=3
SV=1
Length = 217
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMAS 36
TERQIKIWFQNRRMKWKKE+K A
Sbjct: 177 TERQIKIWFQNRRMKWKKENKTAG 200
>sp|Q91771|HXB7A_XENLA Homeobox protein Hox-B7-A OS=Xenopus laevis GN=hoxb7-a PE=2 SV=1
Length = 220
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 23/24 (95%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMAS 36
TERQIKIWFQNRRMKWKKE+K +S
Sbjct: 180 TERQIKIWFQNRRMKWKKENKASS 203
>sp|P22574|HXB4A_DANRE Homeobox protein Hox-B4a OS=Danio rerio GN=hoxb4a PE=2 SV=3
Length = 246
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNV 39
+ERQIKIWFQNRRMKWKK+HK+ + +
Sbjct: 191 SERQIKIWFQNRRMKWKKDHKLPNTKI 217
>sp|Q9PWD2|HXA4_MORSA Homeobox protein Hox-A4 OS=Morone saxatilis GN=hoxa4 PE=3 SV=1
Length = 248
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNV 39
+ERQ+KIWFQNRRMKWKKEHK+ + +
Sbjct: 189 SERQVKIWFQNRRMKWKKEHKLPNTKI 215
>sp|O13074|HXB4A_TAKRU Homeobox protein Hox-B4a OS=Takifugu rubripes GN=hoxb4a PE=3 SV=2
Length = 288
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 24/27 (88%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNV 39
+ERQIKIWFQNRRMKWKK+HK+ + V
Sbjct: 200 SERQIKIWFQNRRMKWKKDHKLPNTKV 226
>sp|P09634|HXA7_RAT Homeobox protein Hox-A7 (Fragment) OS=Rattus norvegicus GN=Hoxa7
PE=2 SV=1
Length = 105
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/24 (91%), Positives = 22/24 (91%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMAS 36
TERQIKIWFQNRRMKWKKEHK S
Sbjct: 45 TERQIKIWFQNRRMKWKKEHKDES 68
>sp|P04476|HXB7B_XENLA Homeobox protein Hox-B7-B OS=Xenopus laevis GN=hoxb7-b PE=2 SV=1
Length = 220
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 23/24 (95%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMAS 36
TERQIKIWFQNRRMKWKKE+K +S
Sbjct: 178 TERQIKIWFQNRRMKWKKENKASS 201
>sp|Q1KL13|HXA4A_TAKRU Homeobox protein Hox-A4a OS=Takifugu rubripes GN=hoxa4a PE=3 SV=1
Length = 255
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNV 39
+ERQ+KIWFQNRRMKWKKEHK+ + +
Sbjct: 189 SERQVKIWFQNRRMKWKKEHKLPNTKI 215
>sp|P50208|HXA5_AMBME Homeobox protein Hox-A5 (Fragment) OS=Ambystoma mexicanum GN=HOXA5
PE=2 SV=1
Length = 148
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 26/27 (96%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNV 39
+ERQIKIWFQNRRMKWKK++K+ SM++
Sbjct: 113 SERQIKIWFQNRRMKWKKDNKLKSMSM 139
>sp|P14840|HXB4_CHICK Homeobox protein Hox-B4 OS=Gallus gallus GN=HOXB4 PE=2 SV=1
Length = 245
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNV 39
+ERQIKIWFQNRRMKWKK+HK+ + +
Sbjct: 190 SERQIKIWFQNRRMKWKKDHKLPNTKI 216
>sp|Q9IA25|HXA7_HETFR Homeobox protein Hox-A7 OS=Heterodontus francisci GN=HOXA7 PE=3
SV=1
Length = 208
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 22/28 (78%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVI 40
TERQIKIWFQNRRMKWKKE K S +
Sbjct: 175 TERQIKIWFQNRRMKWKKETKAGSSSTT 202
>sp|P09070|HXB4_XENLA Homeobox protein Hox-B4 OS=Xenopus laevis GN=hoxb4 PE=2 SV=1
Length = 232
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 25/29 (86%)
Query: 11 RGTERQIKIWFQNRRMKWKKEHKMASMNV 39
R +ERQIKIWFQNRRMKWKK+HK+ + +
Sbjct: 179 RLSERQIKIWFQNRRMKWKKDHKLPNTKI 207
>sp|P31267|HXA6_HUMAN Homeobox protein Hox-A6 OS=Homo sapiens GN=HOXA6 PE=2 SV=2
Length = 233
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/22 (90%), Positives = 22/22 (100%)
Query: 13 TERQIKIWFQNRRMKWKKEHKM 34
TERQIKIWFQNRRMKWKKE+K+
Sbjct: 195 TERQIKIWFQNRRMKWKKENKL 216
>sp|P14838|HXB5_CHICK Homeobox protein Hox-B5 (Fragment) OS=Gallus gallus GN=HOXB5 PE=2
SV=1
Length = 82
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 26/27 (96%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNV 39
+ERQIKIWFQNRRMKWKK++K+ SM++
Sbjct: 47 SERQIKIWFQNRRMKWKKDNKLKSMSL 73
>sp|P14839|HXB6_CHICK Homeobox protein Hox-B6 (Fragment) OS=Gallus gallus GN=HOXB6 PE=3
SV=1
Length = 84
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 25/29 (86%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVIP 41
TERQIKIWFQNRRMKWKKE+K+ S + +
Sbjct: 47 TERQIKIWFQNRRMKWKKENKLLSSSQLS 75
>sp|P09092|HXA6_MOUSE Homeobox protein Hox-A6 OS=Mus musculus GN=Hoxa6 PE=2 SV=2
Length = 232
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/22 (90%), Positives = 22/22 (100%)
Query: 13 TERQIKIWFQNRRMKWKKEHKM 34
TERQIKIWFQNRRMKWKKE+K+
Sbjct: 194 TERQIKIWFQNRRMKWKKENKL 215
>sp|Q9TT89|HXB7_BOVIN Homeobox protein Hox-B7 OS=Bos taurus GN=HOXB7 PE=2 SV=1
Length = 217
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 22/24 (91%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMAS 36
TERQIKIWFQNRRMKWKKE+K +
Sbjct: 177 TERQIKIWFQNRRMKWKKENKTSG 200
>sp|Q1KKX1|HXB6B_TAKRU Homeobox protein Hox-B6b OS=Takifugu rubripes GN=hoxb6b PE=3 SV=1
Length = 233
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 25/29 (86%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVIP 41
TERQIKIWFQNRRMKWKKE+K+ + + P
Sbjct: 195 TERQIKIWFQNRRMKWKKENKLLNPSKTP 223
>sp|Q08DG5|HXB4_BOVIN Homeobox protein Hox-B4 OS=Bos taurus GN=HOXB4 PE=2 SV=1
Length = 251
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNV 39
+ERQIKIWFQNRRMKWKK+HK+ + +
Sbjct: 202 SERQIKIWFQNRRMKWKKDHKLPNTKI 228
>sp|P10284|HXB4_MOUSE Homeobox protein Hox-B4 OS=Mus musculus GN=Hoxb4 PE=2 SV=1
Length = 250
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNV 39
+ERQIKIWFQNRRMKWKK+HK+ + +
Sbjct: 201 SERQIKIWFQNRRMKWKKDHKLPNTKI 227
>sp|P06798|HXA4_MOUSE Homeobox protein Hox-A4 OS=Mus musculus GN=Hoxa4 PE=2 SV=4
Length = 285
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/22 (81%), Positives = 22/22 (100%)
Query: 13 TERQIKIWFQNRRMKWKKEHKM 34
+ERQ+KIWFQNRRMKWKK+HK+
Sbjct: 220 SERQVKIWFQNRRMKWKKDHKL 241
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,099,415
Number of Sequences: 539616
Number of extensions: 753380
Number of successful extensions: 2638
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1717
Number of HSP's gapped (non-prelim): 926
length of query: 61
length of database: 191,569,459
effective HSP length: 34
effective length of query: 27
effective length of database: 173,222,515
effective search space: 4677007905
effective search space used: 4677007905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)