Query psy12003
Match_columns 61
No_of_seqs 126 out of 1034
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 16:13:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ecb_A Zinc fingers and homeob 99.6 5.7E-18 1.9E-22 93.5 -1.3 36 2-37 40-75 (89)
2 1x2m_A LAG1 longevity assuranc 99.6 1.1E-17 3.7E-22 87.6 -4.3 30 2-31 30-59 (64)
3 1nk2_P Homeobox protein VND; h 99.6 2.4E-16 8.2E-21 84.3 -0.5 36 2-37 38-73 (77)
4 3a03_A T-cell leukemia homeobo 99.5 9.9E-17 3.4E-21 81.3 -2.2 30 2-31 26-55 (56)
5 2cue_A Paired box protein PAX6 99.5 3.3E-16 1.1E-20 84.2 -0.9 36 2-37 36-71 (80)
6 2dms_A Homeobox protein OTX2; 99.5 2.9E-16 1E-20 84.4 -1.1 35 2-36 36-70 (80)
7 1uhs_A HOP, homeodomain only p 99.5 2.5E-16 8.4E-21 83.2 -1.7 32 2-33 31-62 (72)
8 3nau_A Zinc fingers and homeob 99.5 2E-16 6.8E-21 83.2 -2.0 31 2-32 33-63 (66)
9 2hi3_A Homeodomain-only protei 99.5 2.9E-16 1E-20 83.2 -1.5 33 2-34 32-64 (73)
10 2dmq_A LIM/homeobox protein LH 99.5 7.7E-16 2.6E-20 82.6 -0.1 34 2-35 36-69 (80)
11 2l9r_A Homeobox protein NKX-3. 99.5 6.9E-17 2.4E-21 85.5 -4.3 32 2-33 33-64 (69)
12 2cqx_A LAG1 longevity assuranc 99.5 1.7E-16 5.9E-21 84.3 -3.0 30 2-31 38-67 (72)
13 1puf_A HOX-1.7, homeobox prote 99.5 3.6E-16 1.2E-20 83.6 -1.7 34 2-35 42-75 (77)
14 1ahd_P Antennapedia protein mu 99.5 2.4E-16 8.1E-21 82.6 -2.4 34 2-35 31-64 (68)
15 1yz8_P Pituitary homeobox 2; D 99.5 5.3E-16 1.8E-20 81.2 -1.3 33 2-34 32-64 (68)
16 2dmp_A Zinc fingers and homeob 99.5 3.2E-16 1.1E-20 86.0 -2.4 36 2-37 42-77 (89)
17 3a02_A Homeobox protein arista 99.5 1.9E-16 6.4E-21 81.1 -3.2 32 2-33 28-59 (60)
18 2h1k_A IPF-1, pancreatic and d 99.5 3.8E-16 1.3E-20 80.7 -2.4 31 2-32 32-62 (63)
19 2ecc_A Homeobox and leucine zi 99.5 5.7E-16 1.9E-20 83.4 -1.8 32 2-33 32-63 (76)
20 2dmu_A Homeobox protein goosec 99.5 3.4E-16 1.2E-20 82.2 -2.7 32 2-33 36-67 (70)
21 1ftt_A TTF-1 HD, thyroid trans 99.5 3.7E-16 1.3E-20 81.8 -2.6 35 2-36 31-65 (68)
22 1ig7_A Homeotic protein MSX-1; 99.5 6.6E-16 2.2E-20 78.4 -1.6 29 2-30 29-57 (58)
23 2e1o_A Homeobox protein PRH; D 99.5 5.4E-16 1.8E-20 81.5 -2.0 32 2-33 36-67 (70)
24 3a01_A Homeodomain-containing 99.5 1.3E-15 4.4E-20 84.1 -0.7 33 2-34 46-78 (93)
25 2cra_A Homeobox protein HOX-B1 99.5 1.9E-16 6.4E-21 83.3 -4.1 32 2-33 36-67 (70)
26 1b72_A Protein (homeobox prote 99.5 7.6E-16 2.6E-20 85.4 -2.2 33 2-34 63-95 (97)
27 2da4_A Hypothetical protein DK 99.5 7.7E-16 2.6E-20 82.7 -2.2 31 2-32 41-71 (80)
28 1zq3_P PRD-4, homeotic bicoid 99.5 1E-15 3.6E-20 80.1 -1.6 34 2-35 31-64 (68)
29 2r5y_A Homeotic protein sex co 99.5 5.8E-16 2E-20 84.5 -2.7 31 2-32 57-87 (88)
30 2dmt_A Homeobox protein BARH-l 99.5 1.9E-16 6.4E-21 85.2 -4.7 32 2-33 46-77 (80)
31 2kt0_A Nanog, homeobox protein 99.5 2.2E-16 7.7E-21 85.4 -4.5 32 2-33 51-82 (84)
32 2hdd_A Protein (engrailed home 99.5 5.4E-16 1.8E-20 79.6 -2.8 29 2-30 32-60 (61)
33 2da1_A Alpha-fetoprotein enhan 99.5 2.8E-16 9.6E-21 82.5 -4.1 32 2-33 36-67 (70)
34 2vi6_A Homeobox protein nanog; 99.5 2.5E-16 8.6E-21 81.1 -4.2 30 2-31 32-61 (62)
35 2da3_A Alpha-fetoprotein enhan 99.5 3.5E-16 1.2E-20 83.8 -3.9 32 2-33 46-77 (80)
36 1fjl_A Paired protein; DNA-bin 99.5 1.3E-15 4.3E-20 82.1 -1.7 33 2-34 47-79 (81)
37 2da2_A Alpha-fetoprotein enhan 99.5 3.1E-16 1.1E-20 82.3 -4.1 32 2-33 36-67 (70)
38 2da5_A Zinc fingers and homeob 99.5 6.1E-16 2.1E-20 82.5 -3.1 32 2-33 36-67 (75)
39 1b8i_A Ultrabithorax, protein 99.5 7E-16 2.4E-20 83.2 -3.2 32 2-33 49-80 (81)
40 1jgg_A Segmentation protein EV 99.5 9.8E-16 3.3E-20 78.4 -2.7 30 2-31 30-59 (60)
41 2m0c_A Homeobox protein arista 99.5 5.1E-16 1.8E-20 82.2 -4.3 35 2-36 38-72 (75)
42 2djn_A Homeobox protein DLX-5; 99.4 4.2E-16 1.4E-20 81.9 -4.7 32 2-33 36-67 (70)
43 2ly9_A Zinc fingers and homeob 99.4 7.5E-16 2.6E-20 81.6 -3.8 34 2-35 35-68 (74)
44 2dn0_A Zinc fingers and homeob 99.4 5.4E-16 1.8E-20 82.7 -4.7 34 2-35 37-70 (76)
45 1b72_B Protein (PBX1); homeodo 99.4 1.3E-15 4.4E-20 82.8 -3.3 34 2-35 33-66 (87)
46 1wh5_A ZF-HD homeobox family p 99.4 7.4E-16 2.5E-20 83.3 -4.4 29 2-30 50-78 (80)
47 1wh7_A ZF-HD homeobox family p 99.4 9.8E-16 3.4E-20 82.9 -3.9 29 2-30 50-78 (80)
48 2l7z_A Homeobox protein HOX-A1 99.4 1.7E-15 5.7E-20 80.3 -2.9 32 2-33 36-67 (73)
49 2k40_A Homeobox expressed in E 99.4 1.2E-15 4.1E-20 79.6 -3.6 33 2-34 30-62 (67)
50 2e19_A Transcription factor 8; 99.4 6.8E-16 2.3E-20 80.4 -4.6 29 2-30 32-60 (64)
51 3rkq_A Homeobox protein NKX-2. 99.4 1.8E-15 6.3E-20 76.5 -3.3 28 2-29 31-58 (58)
52 2nzz_A Penetratin conjugated G 99.4 4.3E-14 1.5E-18 66.8 1.7 23 15-37 1-23 (37)
53 1k61_A Mating-type protein alp 99.4 2.6E-15 8.8E-20 76.7 -3.1 30 2-31 30-59 (60)
54 1bw5_A ISL-1HD, insulin gene e 99.4 2.3E-15 7.7E-20 78.3 -4.2 31 2-32 32-62 (66)
55 1puf_B PRE-B-cell leukemia tra 99.4 6.4E-15 2.2E-19 77.9 -2.5 33 2-34 33-65 (73)
56 1x2n_A Homeobox protein pknox1 99.4 6.1E-15 2.1E-19 77.9 -2.7 32 2-33 39-70 (73)
57 3nar_A ZHX1, zinc fingers and 99.4 4.3E-15 1.5E-19 82.3 -3.5 31 2-32 54-84 (96)
58 1akh_A Protein (mating-type pr 99.4 4.7E-15 1.6E-19 75.9 -3.2 28 2-29 34-61 (61)
59 2dmn_A Homeobox protein TGIF2L 99.4 2.5E-14 8.5E-19 77.5 -1.4 34 2-35 39-72 (83)
60 1du6_A PBX1, homeobox protein 99.4 3.6E-15 1.2E-19 77.0 -4.7 29 2-30 35-63 (64)
61 2cuf_A FLJ21616 protein; homeo 99.4 2.6E-14 8.8E-19 78.9 -1.7 34 2-35 36-84 (95)
62 1le8_B Mating-type protein alp 99.3 1.2E-14 4.2E-19 78.6 -3.3 32 2-33 34-65 (83)
63 2xsd_C POU domain, class 3, tr 99.3 9.5E-15 3.3E-19 87.6 -4.4 33 2-34 128-160 (164)
64 1e3o_C Octamer-binding transcr 99.3 1.8E-14 6E-19 86.0 -3.9 30 2-31 130-159 (160)
65 1au7_A Protein PIT-1, GHF-1; c 99.3 2.1E-14 7.1E-19 84.7 -4.2 30 2-31 116-145 (146)
66 1mnm_C Protein (MAT alpha-2 tr 99.3 3.9E-14 1.3E-18 77.1 -3.0 28 2-29 59-86 (87)
67 3l1p_A POU domain, class 5, tr 99.3 6.4E-14 2.2E-18 83.2 -2.4 30 2-31 125-154 (155)
68 3d1n_I POU domain, class 6, tr 99.3 4.5E-14 1.6E-18 83.4 -3.6 29 2-30 122-150 (151)
69 2da6_A Hepatocyte nuclear fact 99.3 2.9E-13 1E-17 76.2 -0.5 27 11-37 65-91 (102)
70 3k2a_A Homeobox protein MEIS2; 99.3 7E-14 2.4E-18 73.2 -3.0 32 2-33 30-61 (67)
71 2lk2_A Homeobox protein TGIF1; 99.2 4.4E-12 1.5E-16 69.9 1.1 35 2-36 37-71 (89)
72 2d5v_A Hepatocyte nuclear fact 99.2 2.4E-13 8.3E-18 81.0 -4.9 33 2-34 126-158 (164)
73 2da7_A Zinc finger homeobox pr 99.2 6.5E-13 2.2E-17 70.5 -2.8 26 2-27 34-59 (71)
74 1wi3_A DNA-binding protein SAT 99.1 1.7E-12 5.8E-17 68.7 -2.4 27 2-28 37-63 (71)
75 1mh3_A Maltose binding-A1 home 99.1 1.5E-12 5E-17 84.2 -4.5 28 2-29 394-421 (421)
76 1lfb_A Liver transcription fac 99.1 1.4E-12 4.9E-17 72.9 -4.5 25 10-34 64-91 (99)
77 1ic8_A Hepatocyte nuclear fact 98.8 9.3E-11 3.2E-15 72.1 -4.3 28 3-30 145-193 (194)
78 2h8r_A Hepatocyte nuclear fact 98.3 1.3E-08 4.4E-13 63.7 -3.8 17 12-28 202-218 (221)
79 1jko_C HIN recombinase, DNA-in 88.1 0.08 2.7E-06 24.1 -0.3 25 3-27 24-48 (52)
80 2lfw_A PHYR sigma-like domain; 88.0 0.073 2.5E-06 30.2 -0.5 28 2-29 111-138 (157)
81 2ys9_A Homeobox and leucine zi 85.4 0.058 2E-06 28.1 -1.7 21 2-22 35-55 (70)
82 3hug_A RNA polymerase sigma fa 82.0 0.13 4.6E-06 26.8 -1.2 31 2-32 55-85 (92)
83 2glo_A Brinker CG9653-PA; prot 79.4 0.16 5.5E-06 24.6 -1.4 20 3-22 28-47 (59)
84 2q1z_A RPOE, ECF SIGE; ECF sig 78.6 0.31 1.1E-05 27.6 -0.6 29 2-30 153-181 (184)
85 1tc3_C Protein (TC3 transposas 75.6 0.15 5.3E-06 22.7 -2.0 21 2-22 23-43 (51)
86 2jpc_A SSRB; DNA binding prote 70.6 0.23 7.8E-06 23.7 -2.2 24 2-25 15-38 (61)
87 2jml_A DNA binding domain/tran 70.0 0.49 1.7E-05 24.2 -1.1 19 2-20 7-25 (81)
88 1l0o_C Sigma factor; bergerat 69.7 0.94 3.2E-05 26.3 0.0 23 2-24 216-238 (243)
89 3mzy_A RNA polymerase sigma-H 69.0 0.38 1.3E-05 26.4 -1.8 30 2-31 126-155 (164)
90 1or7_A Sigma-24, RNA polymeras 68.6 0.59 2E-05 26.6 -1.0 29 2-30 158-186 (194)
91 2x48_A CAG38821; archeal virus 68.5 0.32 1.1E-05 22.7 -1.9 20 3-22 34-53 (55)
92 1j9i_A GPNU1 DBD;, terminase s 67.6 0.42 1.4E-05 23.7 -1.6 22 2-23 4-25 (68)
93 1xsv_A Hypothetical UPF0122 pr 67.4 0.62 2.1E-05 25.5 -1.1 30 2-31 43-72 (113)
94 2xi8_A Putative transcription 66.7 0.38 1.3E-05 22.7 -1.9 24 2-25 16-39 (66)
95 2o8x_A Probable RNA polymerase 64.2 0.4 1.4E-05 23.2 -2.1 26 2-27 33-58 (70)
96 1s7o_A Hypothetical UPF0122 pr 63.6 0.55 1.9E-05 25.8 -1.8 30 2-31 40-69 (113)
97 1x3u_A Transcriptional regulat 62.1 0.44 1.5E-05 23.7 -2.2 24 2-25 33-56 (79)
98 1rp3_A RNA polymerase sigma fa 62.0 0.95 3.3E-05 26.4 -1.0 29 2-30 205-233 (239)
99 1ku3_A Sigma factor SIGA; heli 61.8 0.48 1.6E-05 23.5 -2.1 26 2-27 32-57 (73)
100 2r1j_L Repressor protein C2; p 61.6 0.55 1.9E-05 22.2 -1.8 24 3-26 21-44 (68)
101 3c57_A Two component transcrip 61.2 0.39 1.3E-05 25.3 -2.6 26 2-27 44-69 (95)
102 1rr7_A Middle operon regulator 60.7 0.74 2.5E-05 26.1 -1.6 18 1-18 93-110 (129)
103 2p7v_B Sigma-70, RNA polymeras 59.9 0.35 1.2E-05 23.7 -2.8 21 2-22 27-47 (68)
104 1je8_A Nitrate/nitrite respons 59.8 0.47 1.6E-05 24.3 -2.4 22 2-23 38-59 (82)
105 2rnj_A Response regulator prot 59.2 0.31 1.1E-05 25.3 -3.2 22 2-23 46-67 (91)
106 3omt_A Uncharacterized protein 58.4 1 3.5E-05 21.9 -1.2 23 3-25 24-46 (73)
107 3bs3_A Putative DNA-binding pr 58.3 0.68 2.3E-05 22.5 -1.9 24 3-26 26-49 (76)
108 1zug_A Phage 434 CRO protein; 56.9 0.73 2.5E-05 22.0 -1.9 24 3-26 19-42 (71)
109 3kz3_A Repressor protein CI; f 56.7 1.2 4E-05 22.2 -1.1 24 3-26 28-51 (80)
110 1uxc_A FRUR (1-57), fructose r 56.5 0.69 2.4E-05 23.1 -2.0 25 1-25 1-25 (65)
111 1neq_A DNA-binding protein NER 55.8 1 3.4E-05 22.9 -1.5 23 2-24 24-46 (74)
112 1adr_A P22 C2 repressor; trans 55.7 0.81 2.8E-05 22.2 -1.8 24 3-26 21-44 (76)
113 2b5a_A C.BCLI; helix-turn-heli 55.6 0.81 2.8E-05 22.3 -1.9 23 3-25 26-48 (77)
114 1r69_A Repressor protein CI; g 55.0 0.81 2.8E-05 21.7 -1.9 25 2-26 16-40 (69)
115 1p4w_A RCSB; solution structur 54.5 0.68 2.3E-05 24.9 -2.4 22 2-23 51-72 (99)
116 1xn7_A Hypothetical protein YH 53.1 1.5 5.1E-05 22.7 -1.1 17 2-18 18-34 (78)
117 1fse_A GERE; helix-turn-helix 52.8 0.61 2.1E-05 22.7 -2.6 22 2-23 28-49 (74)
118 3b7h_A Prophage LP1 protein 11 52.8 0.94 3.2E-05 22.1 -1.9 23 3-25 23-45 (78)
119 2kpj_A SOS-response transcript 52.3 0.98 3.3E-05 23.2 -1.9 24 3-26 25-48 (94)
120 1tty_A Sigma-A, RNA polymerase 52.1 0.46 1.6E-05 24.5 -3.3 21 2-22 40-60 (87)
121 2l8n_A Transcriptional repress 52.1 1.6 5.5E-05 21.8 -1.0 24 2-25 11-34 (67)
122 2a6c_A Helix-turn-helix motif; 51.9 1.2 4E-05 22.5 -1.7 23 3-25 34-56 (83)
123 2rn7_A IS629 ORFA; helix, all 51.8 0.94 3.2E-05 24.0 -2.1 19 3-21 33-51 (108)
124 2jn6_A Protein CGL2762, transp 51.6 0.93 3.2E-05 23.6 -2.1 20 3-22 26-45 (97)
125 2elh_A CG11849-PA, LD40883P; s 51.6 0.91 3.1E-05 23.4 -2.1 20 3-22 41-60 (87)
126 3lsg_A Two-component response 49.8 1.3 4.3E-05 23.1 -1.8 22 2-23 21-42 (103)
127 1y7y_A C.AHDI; helix-turn-heli 49.7 1.1 3.9E-05 21.5 -1.9 23 3-25 29-51 (74)
128 3bd1_A CRO protein; transcript 48.9 0.66 2.3E-05 23.1 -2.9 25 3-27 14-38 (79)
129 1etf_B REV peptide; complex (R 48.7 6.6 0.00023 16.5 0.8 13 22-34 7-19 (26)
130 2ef8_A C.ECOT38IS, putative tr 47.8 1.3 4.4E-05 21.9 -1.9 24 3-26 26-49 (84)
131 2k02_A Ferrous iron transport 47.4 2.1 7.3E-05 22.7 -1.1 17 2-18 18-34 (87)
132 1q06_A Transcriptional regulat 47.1 1.4 4.9E-05 24.7 -1.9 20 1-20 1-20 (135)
133 1pdn_C Protein (PRD paired); p 46.7 1.2 4E-05 23.5 -2.3 20 3-22 36-55 (128)
134 2o3f_A Putative HTH-type trans 46.5 2.9 0.0001 22.7 -0.6 18 1-18 40-57 (111)
135 2ict_A Antitoxin HIGA; helix-t 46.4 1.2 4.2E-05 22.8 -2.1 23 3-25 24-46 (94)
136 1u78_A TC3 transposase, transp 45.8 1.3 4.5E-05 23.9 -2.2 22 2-23 24-45 (141)
137 2k27_A Paired box protein PAX- 45.5 1.9 6.4E-05 24.2 -1.6 21 3-23 44-64 (159)
138 3oq9_A Tumor necrosis factor r 45.4 3.8 0.00013 21.7 -0.3 23 3-25 15-38 (86)
139 3t76_A VANU, transcriptional r 44.8 1.5 5.3E-05 22.9 -1.9 26 2-27 39-64 (88)
140 2k9q_A Uncharacterized protein 44.7 1.6 5.4E-05 21.5 -1.8 23 3-25 18-40 (77)
141 1r8d_A Transcription activator 44.4 1.4 4.8E-05 23.7 -2.2 19 2-20 4-22 (109)
142 3f6w_A XRE-family like protein 43.9 1.6 5.6E-05 21.6 -1.8 23 3-25 30-52 (83)
143 3clo_A Transcriptional regulat 43.6 1.1 3.8E-05 27.3 -2.9 26 2-27 214-239 (258)
144 8tfv_A Protein (thanatin); bac 43.6 8.1 0.00028 15.1 0.6 13 14-26 3-15 (21)
145 2vz4_A Tipal, HTH-type transcr 43.2 1.5 5.1E-05 23.6 -2.2 20 1-20 2-21 (108)
146 1rzs_A Antirepressor, regulato 43.1 1.5 5E-05 21.2 -2.0 19 3-21 13-31 (61)
147 2hin_A GP39, repressor protein 42.9 1.4 4.8E-05 22.5 -2.2 29 3-31 13-41 (71)
148 2kvr_A Ubiquitin carboxyl-term 42.7 5.3 0.00018 22.5 0.0 22 4-25 73-94 (130)
149 1oyi_A Double-stranded RNA-bin 42.7 2.8 9.6E-05 22.1 -1.1 16 3-18 33-48 (82)
150 2wiu_B HTH-type transcriptiona 42.5 1.7 5.8E-05 21.7 -1.9 24 3-26 28-51 (88)
151 3fmy_A HTH-type transcriptiona 41.9 2.7 9.3E-05 20.6 -1.2 24 3-26 27-50 (73)
152 3iwf_A Transcription regulator 40.4 2.8 9.7E-05 22.7 -1.3 18 1-18 36-53 (107)
153 3qq6_A HTH-type transcriptiona 40.2 2 6.7E-05 21.4 -1.9 22 2-23 25-46 (78)
154 3s8q_A R-M controller protein; 40.1 2 6.8E-05 21.2 -1.9 23 3-25 27-49 (82)
155 2x7l_M HIV REV; nuclear export 40.0 9.6 0.00033 21.4 0.8 13 22-34 38-50 (115)
156 3t72_q RNA polymerase sigma fa 39.9 3.2 0.00011 22.3 -1.1 28 2-29 41-68 (99)
157 3gpv_A Transcriptional regulat 39.9 2.8 9.5E-05 23.9 -1.5 19 2-20 18-36 (148)
158 1qbj_A Protein (double-strande 39.9 2.2 7.4E-05 22.2 -1.8 16 3-18 30-45 (81)
159 1qgp_A Protein (double strande 39.8 2.1 7.3E-05 21.8 -1.8 16 3-18 34-49 (77)
160 3gp4_A Transcriptional regulat 39.7 1.9 6.6E-05 24.5 -2.1 20 1-20 3-22 (142)
161 1k78_A Paired box protein PAX5 39.4 1.8 6.3E-05 23.9 -2.3 20 3-22 51-70 (149)
162 3on2_A Probable transcriptiona 39.2 6.3 0.00021 21.6 -0.0 24 3-26 35-58 (199)
163 2l49_A C protein; P2 bacteriop 38.5 2.5 8.7E-05 21.6 -1.7 24 3-26 20-43 (99)
164 1x57_A Endothelial differentia 38.4 2 6.7E-05 21.8 -2.1 25 2-26 28-52 (91)
165 2pij_A Prophage PFL 6 CRO; tra 37.9 1.6 5.6E-05 20.8 -2.4 20 3-22 16-35 (67)
166 1lmb_3 Protein (lambda repress 37.2 2.5 8.4E-05 21.3 -1.8 23 3-25 33-55 (92)
167 2ewt_A BLDD, putative DNA-bind 36.0 3.3 0.00011 19.6 -1.4 23 3-25 24-48 (71)
168 3mkl_A HTH-type transcriptiona 35.9 2.9 9.8E-05 22.4 -1.8 22 2-23 25-46 (120)
169 2heo_A Z-DNA binding protein 1 35.9 3.1 0.00011 20.5 -1.5 15 3-17 28-42 (67)
170 2jt1_A PEFI protein; solution 35.7 2.7 9.4E-05 21.6 -1.8 16 3-18 27-42 (77)
171 3ulq_B Transcriptional regulat 35.2 2 6.8E-05 22.5 -2.4 20 2-21 46-65 (90)
172 2fd5_A Transcriptional regulat 35.0 9.3 0.00032 20.8 0.3 23 3-25 30-52 (180)
173 2jrt_A Uncharacterized protein 34.8 3.7 0.00012 22.0 -1.4 19 3-21 52-70 (95)
174 2dg6_A Putative transcriptiona 34.5 3.1 0.00011 25.4 -1.9 20 1-20 1-20 (222)
175 3him_A Probable transcriptiona 34.4 9.1 0.00031 21.1 0.2 24 3-26 39-62 (211)
176 1hlv_A CENP-B, major centromer 34.4 2.1 7E-05 23.2 -2.6 24 5-28 30-53 (131)
177 2ofy_A Putative XRE-family tra 34.2 2.5 8.5E-05 21.1 -2.1 23 3-25 30-52 (86)
178 2of5_A Death domain-containing 33.7 7.1 0.00024 21.5 -0.4 16 4-19 39-54 (114)
179 2q0o_A Probable transcriptiona 33.6 2.5 8.7E-05 25.2 -2.4 23 3-25 193-215 (236)
180 1wxp_A THO complex subunit 1; 33.3 7.9 0.00027 20.9 -0.2 16 4-19 33-48 (110)
181 3lph_A Protein REV; helix-loop 33.1 15 0.00051 19.0 0.8 13 22-34 41-53 (72)
182 3vk0_A NHTF, transcriptional r 32.9 3.6 0.00012 21.9 -1.7 23 3-25 37-59 (114)
183 3oou_A LIN2118 protein; protei 32.6 2.3 8E-05 22.3 -2.5 21 2-22 23-43 (108)
184 1l3l_A Transcriptional activat 32.6 2.7 9.2E-05 25.1 -2.4 21 3-23 191-211 (234)
185 3hh0_A Transcriptional regulat 32.5 2.9 0.0001 23.8 -2.2 19 2-20 6-24 (146)
186 3op9_A PLI0006 protein; struct 32.5 2.9 9.9E-05 22.1 -2.1 24 3-26 25-48 (114)
187 3eus_A DNA-binding protein; st 32.1 4.9 0.00017 20.2 -1.2 23 3-25 30-52 (86)
188 3mn2_A Probable ARAC family tr 31.9 2.4 8.2E-05 22.2 -2.5 22 2-23 20-41 (108)
189 2np3_A Putative TETR-family re 31.9 11 0.00038 21.1 0.2 23 3-25 53-75 (212)
190 2cw1_A SN4M; lambda CRO fold, 31.9 3.3 0.00011 20.7 -1.8 19 3-21 16-34 (65)
191 3f52_A CLP gene regulator (CLG 31.5 5.3 0.00018 21.1 -1.1 23 3-25 44-66 (117)
192 2zhg_A Redox-sensitive transcr 31.4 3.2 0.00011 23.8 -2.1 19 2-20 13-31 (154)
193 1ich_A TNF-1, tumor necrosis f 31.1 3.8 0.00013 22.8 -1.8 16 3-18 28-43 (112)
194 1b0n_A Protein (SINR protein); 30.9 3.6 0.00012 21.3 -1.9 21 3-23 17-37 (111)
195 4hku_A LMO2814 protein, TETR t 30.5 12 0.00043 20.5 0.3 24 3-26 30-53 (178)
196 2k9s_A Arabinose operon regula 30.3 4 0.00014 21.3 -1.7 21 2-22 22-42 (107)
197 3aqt_A Bacterial regulatory pr 30.3 13 0.00043 21.7 0.3 24 3-26 69-92 (245)
198 3cec_A Putative antidote prote 30.3 3.8 0.00013 21.2 -1.8 23 3-25 34-56 (104)
199 3g5g_A Regulatory protein; tra 30.1 3.8 0.00013 21.5 -1.9 23 3-25 44-66 (99)
200 2jvl_A TRMBF1; coactivator, he 29.9 4.3 0.00015 21.5 -1.7 24 3-26 52-75 (107)
201 3oio_A Transcriptional regulat 29.8 2.8 9.6E-05 22.2 -2.5 21 2-22 25-45 (113)
202 2lfc_A Fumarate reductase, fla 29.4 4.4 0.00015 23.1 -1.8 16 2-17 97-112 (160)
203 2l32_A Small archaeal modifier 29.2 25 0.00085 17.6 1.3 23 3-26 23-45 (74)
204 3mlf_A Transcriptional regulat 29.2 3.8 0.00013 21.9 -2.0 23 3-25 39-61 (111)
205 1mhm_B Adometdc, samdc, S-aden 29.1 14 0.00047 19.0 0.3 16 7-22 9-24 (72)
206 2fjr_A Repressor protein CI; g 28.8 5 0.00017 22.9 -1.6 25 3-27 23-47 (189)
207 3geu_A Intercellular adhesion 28.8 7 0.00024 21.5 -1.0 23 3-25 26-48 (189)
208 3uj3_X DNA-invertase; helix-tu 28.8 12 0.0004 21.6 0.0 25 3-27 161-185 (193)
209 3nrg_A TETR family transcripti 28.7 9.9 0.00034 21.1 -0.3 23 3-25 36-58 (217)
210 1fad_A Protein (FADD protein); 28.7 6.5 0.00022 20.6 -1.1 16 4-19 29-44 (99)
211 2eby_A Putative HTH-type trans 28.3 4.4 0.00015 21.3 -1.8 23 3-25 27-49 (113)
212 2l4h_A Calcium and integrin-bi 28.1 8.3 0.00028 22.4 -0.8 21 2-22 35-55 (214)
213 2gqq_A Leucine-responsive regu 28.0 24 0.00082 19.7 1.2 16 3-18 30-45 (163)
214 3qqa_A CMER; alpha-helical, he 28.0 11 0.00037 21.0 -0.3 23 3-25 42-64 (216)
215 3ezq_A Tumor necrosis factor r 27.6 7.3 0.00025 21.7 -1.0 16 3-18 23-38 (115)
216 2dbb_A Putative HTH-type trans 27.5 8.3 0.00028 21.3 -0.8 16 3-18 26-41 (151)
217 2o71_A Death domain-containing 27.3 7.2 0.00025 21.5 -1.1 16 4-19 39-54 (115)
218 2jpf_A Hypothetical protein; a 27.3 5.8 0.0002 21.8 -1.4 11 14-24 51-61 (127)
219 2ppx_A AGR_C_3184P, uncharacte 27.2 4.5 0.00016 20.9 -1.9 24 3-26 46-69 (99)
220 2qko_A Possible transcriptiona 27.1 10 0.00036 21.3 -0.5 25 3-27 51-75 (215)
221 2l0k_A Stage III sporulation p 27.0 4.1 0.00014 21.7 -2.1 23 2-24 22-44 (93)
222 3o9x_A Uncharacterized HTH-typ 27.0 6.1 0.00021 21.4 -1.4 24 3-26 87-110 (133)
223 3i4p_A Transcriptional regulat 26.8 5.9 0.0002 22.4 -1.5 16 3-18 20-35 (162)
224 1bl0_A Protein (multiple antib 26.1 4.5 0.00015 21.9 -2.1 21 2-22 29-49 (129)
225 3iz6_M 40S ribosomal protein S 25.9 14 0.00046 21.6 -0.1 11 15-25 77-87 (152)
226 3ccy_A Putative TETR-family tr 25.8 15 0.00052 20.4 0.1 23 3-25 37-59 (203)
227 2qwt_A Transcriptional regulat 25.4 7.2 0.00025 21.8 -1.4 23 3-25 35-57 (196)
228 3lfp_A CSP231I C protein; tran 25.2 6.6 0.00023 20.1 -1.4 23 3-25 17-43 (98)
229 3trb_A Virulence-associated pr 25.1 5.4 0.00018 21.2 -1.8 23 3-25 30-52 (104)
230 3nxc_A HTH-type protein SLMA; 24.9 8.6 0.00029 21.3 -1.1 24 3-26 48-71 (212)
231 3ivp_A Putative transposon-rel 24.8 4.7 0.00016 21.6 -2.1 23 3-25 28-50 (126)
232 1fpw_A Yeast frequenin, calciu 24.2 11 0.00036 20.8 -0.8 21 2-22 12-32 (190)
233 3lsj_A DEST; transcriptional r 23.8 12 0.00042 21.0 -0.6 24 3-26 35-58 (220)
234 1wm3_A Ubiquitin-like protein 23.8 15 0.00053 18.0 -0.1 22 6-27 31-52 (72)
235 2zcm_A Biofilm operon icaabcd 23.7 7.9 0.00027 21.3 -1.4 23 3-25 30-52 (192)
236 2w48_A Sorbitol operon regulat 23.6 11 0.00038 23.5 -0.9 17 2-18 23-39 (315)
237 3bdn_A Lambda repressor; repre 23.4 6.3 0.00021 23.2 -2.0 22 4-25 34-55 (236)
238 3f1b_A TETR-like transcription 23.4 8.3 0.00028 21.2 -1.4 24 3-26 37-60 (203)
239 3kyd_D Small ubiquitin-related 23.4 17 0.00058 20.1 -0.0 22 6-27 70-91 (115)
240 2cg4_A Regulatory protein ASNC 23.2 7.6 0.00026 21.5 -1.5 16 3-18 25-40 (152)
241 1j5y_A Transcriptional regulat 23.2 6.9 0.00024 22.7 -1.8 16 3-18 39-54 (187)
242 3pas_A TETR family transcripti 23.1 5.7 0.0002 21.6 -2.1 23 3-25 31-53 (195)
243 3cdl_A Transcriptional regulat 22.9 9.9 0.00034 21.3 -1.1 25 3-27 32-56 (203)
244 2io0_B Small ubiquitin-related 22.7 27 0.00091 18.2 0.7 23 5-27 34-56 (91)
245 3kkd_A Transcriptional regulat 22.5 14 0.0005 21.1 -0.4 23 3-25 58-80 (237)
246 2q24_A Putative TETR family tr 22.3 8.9 0.0003 21.2 -1.4 23 3-25 37-59 (194)
247 2yqf_A Ankyrin-1; death domain 22.2 9 0.00031 20.6 -1.3 16 4-19 33-48 (111)
248 3bqz_B HTH-type transcriptiona 22.2 8.8 0.0003 20.9 -1.4 22 3-24 25-46 (194)
249 4ich_A Transcriptional regulat 22.1 19 0.00064 21.9 0.0 24 3-26 46-69 (311)
250 1zk8_A Transcriptional regulat 21.8 7.8 0.00027 21.1 -1.7 23 3-25 31-53 (183)
251 3col_A Putative transcription 21.8 7.3 0.00025 21.2 -1.8 23 3-25 33-55 (196)
252 1u8b_A ADA polyprotein; protei 21.7 5 0.00017 21.8 -2.5 21 2-22 95-115 (133)
253 1w8x_P Protein P16, protein S, 21.7 12 0.00039 20.3 -0.9 10 17-26 19-28 (117)
254 3ezq_B Protein FADD; apoptosis 21.7 11 0.00037 21.0 -1.1 16 4-19 21-36 (122)
255 2iu5_A DHAS, YCEG, HTH-type dh 21.7 16 0.00053 20.2 -0.4 24 3-26 36-59 (195)
256 2of5_H Leucine-rich repeat and 21.5 9.6 0.00033 20.9 -1.3 16 4-19 28-43 (118)
257 2og0_A Excisionase; protein-DN 21.5 10 0.00036 18.1 -1.0 22 3-24 5-28 (52)
258 2htj_A P fimbrial regulatory p 21.5 9.2 0.00031 19.0 -1.3 16 3-18 17-32 (81)
259 1sgm_A Putative HTH-type trans 21.4 10 0.00034 20.6 -1.3 22 3-24 29-51 (191)
260 3qp6_A CVIR transcriptional re 21.4 5.9 0.0002 24.3 -2.4 23 3-25 215-237 (265)
261 2ras_A Transcriptional regulat 21.3 8.3 0.00028 21.6 -1.7 24 3-26 34-57 (212)
262 3s5r_A Transcriptional regulat 21.3 14 0.00048 20.5 -0.7 24 3-26 33-56 (216)
263 2hxo_A Putative TETR-family tr 21.1 16 0.00056 21.5 -0.4 24 3-26 39-62 (237)
264 2p5t_A Putative transcriptiona 21.1 20 0.00069 19.9 0.0 22 3-24 17-38 (158)
265 2cyy_A Putative HTH-type trans 21.1 8.9 0.00031 21.2 -1.5 16 3-18 24-39 (151)
266 2cfx_A HTH-type transcriptiona 20.9 10 0.00034 20.9 -1.3 16 3-18 22-37 (144)
267 3rd3_A Probable transcriptiona 20.9 8.3 0.00028 21.1 -1.7 24 3-26 33-56 (197)
268 3plo_X DNA-invertase; resolvas 20.8 21 0.00071 20.6 0.0 28 3-30 161-188 (193)
269 3a4r_A Nfatc2-interacting prot 20.7 20 0.00067 18.0 -0.1 22 6-27 38-59 (79)
270 1ttw_A Secretion chaperone; ch 20.7 42 0.0014 19.3 1.3 12 3-14 8-19 (138)
271 1pb6_A Hypothetical transcript 20.4 10 0.00035 21.0 -1.4 23 3-25 41-63 (212)
272 3loc_A HTH-type transcriptiona 20.4 7.1 0.00024 21.6 -2.1 22 3-24 41-62 (212)
273 2oi8_A Putative regulatory pro 20.4 12 0.00041 21.5 -1.1 23 3-25 39-61 (216)
274 2bnm_A Epoxidase; oxidoreducta 20.3 7.9 0.00027 22.1 -1.9 24 2-25 25-48 (198)
No 1
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=5.7e-18 Score=93.51 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=31.5
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhhhcc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKMASM 37 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~~~~ 37 (61)
+..+||..|||+|++|+|||||||+|||+.+.....
T Consensus 40 ~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~~ 75 (89)
T 2ecb_A 40 ELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKMEI 75 (89)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCCC
T ss_pred HHHHHHHHhCcChHHCeecccccchHHHHHHHHhhc
Confidence 457899999999999999999999999997765444
No 2
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=1.1e-17 Score=87.62 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=27.6
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKE 31 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~ 31 (61)
+..+||..|||+|+||+|||||||+|+|+.
T Consensus 30 ~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 30 RLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 468999999999999999999999999863
No 3
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.55 E-value=2.4e-16 Score=84.28 Aligned_cols=36 Identities=33% Similarity=0.385 Sum_probs=31.9
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhhhcc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKMASM 37 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~~~~ 37 (61)
+..+||..|||++.+|+|||||||+|+|+.......
T Consensus 38 ~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~~ 73 (77)
T 1nk2_P 38 EREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGY 73 (77)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccccC
Confidence 467899999999999999999999999998775544
No 4
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.55 E-value=9.9e-17 Score=81.29 Aligned_cols=30 Identities=40% Similarity=0.739 Sum_probs=27.9
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKE 31 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~ 31 (61)
+..+||..+||++.+|+|||||||+|+|++
T Consensus 26 ~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 26 ERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 457899999999999999999999999985
No 5
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=3.3e-16 Score=84.23 Aligned_cols=36 Identities=33% Similarity=0.612 Sum_probs=32.0
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhhhcc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKMASM 37 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~~~~ 37 (61)
+..+||..|+|++.+|+|||||||+|+|+..+....
T Consensus 36 ~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~~ 71 (80)
T 2cue_A 36 ARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQ 71 (80)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhhc
Confidence 467899999999999999999999999999875543
No 6
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=2.9e-16 Score=84.39 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=31.1
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhhhc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKMAS 36 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~~~ 36 (61)
+..+||..|+|++.+|+|||||||+|+|+......
T Consensus 36 ~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~ 70 (80)
T 2dms_A 36 MREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQ 70 (80)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCC
T ss_pred HHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccC
Confidence 46789999999999999999999999999876443
No 7
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.53 E-value=2.5e-16 Score=83.24 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=29.6
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHK 33 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~ 33 (61)
+..+||..|||++.+|+|||||||+|+|+..+
T Consensus 31 ~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 31 TLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 46789999999999999999999999999875
No 8
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.53 E-value=2e-16 Score=83.20 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=28.7
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEH 32 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~ 32 (61)
|..+||..||||+++|+|||||||+|||+..
T Consensus 33 er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 33 EVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 5789999999999999999999999999854
No 9
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.53 E-value=2.9e-16 Score=83.21 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=30.1
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKM 34 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~ 34 (61)
+..+||..+||++.+|+|||||||+|+|+..+.
T Consensus 32 ~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~ 64 (73)
T 2hi3_A 32 TLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 64 (73)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccC
Confidence 467899999999999999999999999998753
No 10
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=7.7e-16 Score=82.59 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=30.7
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKMA 35 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~~ 35 (61)
+..+||..|+|++.+|+|||||||+|+|+.....
T Consensus 36 ~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 36 DLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999987643
No 11
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.52 E-value=6.9e-17 Score=85.47 Aligned_cols=32 Identities=41% Similarity=0.535 Sum_probs=28.9
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHK 33 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~ 33 (61)
+..+||..|||+|++|+|||||||+|+|+...
T Consensus 33 ~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 33 ERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred HHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 45789999999999999999999999998654
No 12
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.52 E-value=1.7e-16 Score=84.31 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=27.5
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKE 31 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~ 31 (61)
+..+||..|||+|++|+|||||||+|||+.
T Consensus 38 ~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 38 RLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 457899999999999999999999999974
No 13
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.52 E-value=3.6e-16 Score=83.56 Aligned_cols=34 Identities=50% Similarity=0.576 Sum_probs=30.8
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKMA 35 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~~ 35 (61)
+..+||..|||++.+|+|||||||+|+|+..+..
T Consensus 42 ~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~~ 75 (77)
T 1puf_A 42 RRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 75 (77)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhhc
Confidence 4678999999999999999999999999987653
No 14
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.52 E-value=2.4e-16 Score=82.65 Aligned_cols=34 Identities=59% Similarity=0.868 Sum_probs=30.5
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKMA 35 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~~ 35 (61)
+..+||..|||++.+|+|||||||+|+|+..+..
T Consensus 31 ~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 31 RRIEIAHALSLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcccc
Confidence 4678999999999999999999999999987643
No 15
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.51 E-value=5.3e-16 Score=81.18 Aligned_cols=33 Identities=30% Similarity=0.591 Sum_probs=30.3
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKM 34 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~ 34 (61)
+..+||..|||++.+|+|||||||+|+|+..+.
T Consensus 32 ~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 32 TREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp TTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 567899999999999999999999999998764
No 16
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.2e-16 Score=86.03 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=31.3
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhhhcc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKMASM 37 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~~~~ 37 (61)
+..+||..|||++.+|+|||||||+|+|+.......
T Consensus 42 ~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~~~ 77 (89)
T 2dmp_A 42 ELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVLD 77 (89)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCCCC
T ss_pred HHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhhhc
Confidence 457899999999999999999999999998765433
No 17
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.51 E-value=1.9e-16 Score=81.09 Aligned_cols=32 Identities=41% Similarity=0.639 Sum_probs=26.5
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHK 33 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~ 33 (61)
+..+||..+||++.+|+|||||||+|+|+..+
T Consensus 28 ~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 28 TREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 46789999999999999999999999998764
No 18
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.50 E-value=3.8e-16 Score=80.68 Aligned_cols=31 Identities=58% Similarity=0.831 Sum_probs=28.5
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEH 32 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~ 32 (61)
+..+||..|||++.+|+|||||||+|+|+.+
T Consensus 32 ~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 32 RRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 4578999999999999999999999999864
No 19
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=5.7e-16 Score=83.39 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=29.1
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHK 33 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~ 33 (61)
|..+||..|||+|++|+|||||||+|+|+...
T Consensus 32 er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 32 DYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 56799999999999999999999999998643
No 20
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.4e-16 Score=82.25 Aligned_cols=32 Identities=25% Similarity=0.580 Sum_probs=29.4
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHK 33 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~ 33 (61)
+..+||..|||++.+|+|||||||+|+|+...
T Consensus 36 ~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 36 TREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 46789999999999999999999999999765
No 21
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.50 E-value=3.7e-16 Score=81.82 Aligned_cols=35 Identities=34% Similarity=0.398 Sum_probs=31.0
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhhhc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKMAS 36 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~~~ 36 (61)
+..+||..|||++.+|+|||||||+|+|+..+...
T Consensus 31 ~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~~ 65 (68)
T 1ftt_A 31 EREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKA 65 (68)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHhh
Confidence 46789999999999999999999999999876443
No 22
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.50 E-value=6.6e-16 Score=78.43 Aligned_cols=29 Identities=45% Similarity=0.560 Sum_probs=27.2
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKK 30 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr 30 (61)
+..+||..+||++.+|+|||||||+|+|+
T Consensus 29 ~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 29 ERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 46789999999999999999999999997
No 23
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=5.4e-16 Score=81.53 Aligned_cols=32 Identities=41% Similarity=0.685 Sum_probs=29.4
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHK 33 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~ 33 (61)
+..+||..|+|++.+|+|||||||+|+|+...
T Consensus 36 ~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 36 ERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 46789999999999999999999999999765
No 24
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.49 E-value=1.3e-15 Score=84.12 Aligned_cols=33 Identities=33% Similarity=0.601 Sum_probs=30.1
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKM 34 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~ 34 (61)
+..+||..|||++.+|+|||||||+|||+....
T Consensus 46 ~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 46 ERAALARGLKMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCChhhcccccHhhhhhhhhhhHH
Confidence 467899999999999999999999999998664
No 25
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=1.9e-16 Score=83.30 Aligned_cols=32 Identities=44% Similarity=0.560 Sum_probs=29.1
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHK 33 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~ 33 (61)
+..+||..|||++.+|+|||||||+|+|+...
T Consensus 36 ~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 36 KRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred HHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 46789999999999999999999999998654
No 26
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.48 E-value=7.6e-16 Score=85.43 Aligned_cols=33 Identities=42% Similarity=0.569 Sum_probs=30.1
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKM 34 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~ 34 (61)
+..+||..|||++.+|+|||||||+|+|+..+.
T Consensus 63 ~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 63 RRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 467899999999999999999999999998764
No 27
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=7.7e-16 Score=82.73 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=28.6
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEH 32 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~ 32 (61)
+..+||..|||++.+|+|||||||+|+|+..
T Consensus 41 ~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 41 KIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 5679999999999999999999999999954
No 28
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.48 E-value=1e-15 Score=80.10 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=30.6
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKMA 35 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~~ 35 (61)
+..+||..|||++.+|+|||||||+|+|+.....
T Consensus 31 ~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 31 RLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 4578999999999999999999999999987643
No 29
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.48 E-value=5.8e-16 Score=84.55 Aligned_cols=31 Identities=65% Similarity=0.980 Sum_probs=28.5
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEH 32 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~ 32 (61)
+..+||..|||++.+|+|||||||+|+|+..
T Consensus 57 ~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 57 RRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 4678999999999999999999999999864
No 30
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.9e-16 Score=85.22 Aligned_cols=32 Identities=38% Similarity=0.652 Sum_probs=29.1
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHK 33 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~ 33 (61)
+..+||..|+|++.+|+|||||||+|+|+...
T Consensus 46 ~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 46 DRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 46789999999999999999999999998654
No 31
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.48 E-value=2.2e-16 Score=85.36 Aligned_cols=32 Identities=38% Similarity=0.493 Sum_probs=29.1
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHK 33 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~ 33 (61)
+..+||..|||++.+|+|||||||+|+|+..+
T Consensus 51 ~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 51 QMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999998654
No 32
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.48 E-value=5.4e-16 Score=79.59 Aligned_cols=29 Identities=41% Similarity=0.520 Sum_probs=27.1
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKK 30 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr 30 (61)
+..+||..+||++.+|+|||||||+|+|+
T Consensus 32 ~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 32 RRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 46789999999999999999999999986
No 33
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.48 E-value=2.8e-16 Score=82.48 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=29.5
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHK 33 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~ 33 (61)
+..+||..|||++.+|+|||||||+|+|+..+
T Consensus 36 ~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 36 QIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 56799999999999999999999999998754
No 34
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.48 E-value=2.5e-16 Score=81.07 Aligned_cols=30 Identities=33% Similarity=0.470 Sum_probs=27.8
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKE 31 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~ 31 (61)
+..+||..|||++.+|+|||||||+|+|+.
T Consensus 32 ~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 32 QMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 467899999999999999999999999985
No 35
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.47 E-value=3.5e-16 Score=83.77 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=29.1
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHK 33 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~ 33 (61)
+..+||..|+|++.+|+|||||||+|+|+...
T Consensus 46 ~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 46 MLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 46789999999999999999999999998654
No 36
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.47 E-value=1.3e-15 Score=82.05 Aligned_cols=33 Identities=33% Similarity=0.542 Sum_probs=30.0
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKM 34 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~ 34 (61)
+..+||..|||++.+|+|||||||+|+|++...
T Consensus 47 ~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~~ 79 (81)
T 1fjl_A 47 TREELAQRTNLTEARIQVWFQNRRARLRKQHTS 79 (81)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHhhhhhhhccc
Confidence 467899999999999999999999999998753
No 37
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.47 E-value=3.1e-16 Score=82.31 Aligned_cols=32 Identities=31% Similarity=0.375 Sum_probs=29.1
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHK 33 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~ 33 (61)
+..+||..|||++.+|+|||||||+|+|+...
T Consensus 36 ~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 36 EFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 46789999999999999999999999998654
No 38
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=6.1e-16 Score=82.46 Aligned_cols=32 Identities=34% Similarity=0.536 Sum_probs=29.5
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHK 33 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~ 33 (61)
+..+||..|||++.+|+|||||||+|+|+..+
T Consensus 36 ~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 36 ELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred HHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 46789999999999999999999999999765
No 39
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.46 E-value=7e-16 Score=83.25 Aligned_cols=32 Identities=56% Similarity=0.733 Sum_probs=28.6
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHK 33 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~ 33 (61)
+..+||..|||++.+|+|||||||+|+|+..+
T Consensus 49 ~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 49 RRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 46789999999999999999999999998643
No 40
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.46 E-value=9.8e-16 Score=78.39 Aligned_cols=30 Identities=40% Similarity=0.518 Sum_probs=27.8
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKE 31 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~ 31 (61)
+..+||..|||++.+|+|||||||+|+|++
T Consensus 30 ~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 30 RRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 467899999999999999999999999985
No 41
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.45 E-value=5.1e-16 Score=82.18 Aligned_cols=35 Identities=31% Similarity=0.613 Sum_probs=30.8
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhhhc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKMAS 36 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~~~ 36 (61)
+..+||..|||++.+|+|||||||+|+|+..+.+.
T Consensus 38 ~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~~q 72 (75)
T 2m0c_A 38 AREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQ 72 (75)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCCS
T ss_pred HHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhhhh
Confidence 46789999999999999999999999999766433
No 42
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=4.2e-16 Score=81.95 Aligned_cols=32 Identities=38% Similarity=0.445 Sum_probs=28.9
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHK 33 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~ 33 (61)
+..+||..|+|++.+|+|||||||+|+|+...
T Consensus 36 ~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 36 ERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 46789999999999999999999999998653
No 43
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.45 E-value=7.5e-16 Score=81.58 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=30.2
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKMA 35 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~~ 35 (61)
+..+||..+||++.+|+|||||||+|+|+.....
T Consensus 35 ~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 68 (74)
T 2ly9_A 35 EIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQ 68 (74)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSC
T ss_pred HHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCC
Confidence 4678999999999999999999999999976543
No 44
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=5.4e-16 Score=82.71 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=30.3
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKMA 35 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~~ 35 (61)
+..+||..|||++.+|+|||||||+|+|+..+..
T Consensus 37 ~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~ 70 (76)
T 2dn0_A 37 EVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSR 70 (76)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSS
T ss_pred HHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccC
Confidence 4678999999999999999999999999976643
No 45
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.44 E-value=1.3e-15 Score=82.81 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=30.5
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKMA 35 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~~ 35 (61)
+..+||..+||++.+|+|||||||+|+|+.....
T Consensus 33 ~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 33 AKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 4678999999999999999999999999986543
No 46
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.44 E-value=7.4e-16 Score=83.25 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=26.6
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKK 30 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr 30 (61)
+..+||..|+|+|.+|+|||||||+|+|+
T Consensus 50 ~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 50 VIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred HHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 45789999999999999999999999875
No 47
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.44 E-value=9.8e-16 Score=82.90 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=26.6
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKK 30 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr 30 (61)
+..+||..|+|+|.+|||||||||+|+|+
T Consensus 50 ~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 50 AVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred HHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45789999999999999999999999875
No 48
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.44 E-value=1.7e-15 Score=80.33 Aligned_cols=32 Identities=44% Similarity=0.559 Sum_probs=29.0
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHK 33 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~ 33 (61)
+..+||..+||++.+|+|||||||+|+|+...
T Consensus 36 ~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 36 KRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp HHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 46789999999999999999999999998654
No 49
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.43 E-value=1.2e-15 Score=79.56 Aligned_cols=33 Identities=36% Similarity=0.475 Sum_probs=29.7
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKM 34 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~ 34 (61)
+..+||..+||++.+|+|||||||+|+|+....
T Consensus 30 ~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 30 ILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred HHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 467899999999999999999999999987653
No 50
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=6.8e-16 Score=80.42 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=26.5
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKK 30 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr 30 (61)
+..+||..|||++++|+|||||||+|.++
T Consensus 32 ~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 32 ELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 46789999999999999999999998765
No 51
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.42 E-value=1.8e-15 Score=76.46 Aligned_cols=28 Identities=43% Similarity=0.506 Sum_probs=25.9
Q ss_pred chhhhhcCCCCCccceeeccccchhHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWK 29 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~k 29 (61)
+..+||..|||++.+|+|||||||+|+|
T Consensus 31 ~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 31 ERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 4678999999999999999999999975
No 52
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=99.42 E-value=4.3e-14 Score=66.83 Aligned_cols=23 Identities=70% Similarity=1.097 Sum_probs=19.8
Q ss_pred cceeeccccchhHHHHHhhhhcc
Q psy12003 15 RQIKIWFQNRRMKWKKEHKMASM 37 (61)
Q Consensus 15 ~~VqvWFqNrRak~kr~~~~~~~ 37 (61)
+||+|||||||||||+.......
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~ 23 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDAR 23 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTT
T ss_pred CCceeccHHHHHHHHHHhHHHHH
Confidence 48999999999999999886544
No 53
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.41 E-value=2.6e-15 Score=76.73 Aligned_cols=30 Identities=33% Similarity=0.268 Sum_probs=27.5
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKE 31 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~ 31 (61)
|..+||..+||++.+|+|||||||+|+|+.
T Consensus 30 ~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 30 GLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 467899999999999999999999999873
No 54
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.39 E-value=2.3e-15 Score=78.28 Aligned_cols=31 Identities=32% Similarity=0.374 Sum_probs=28.3
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEH 32 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~ 32 (61)
+..+||..+||++.+|+|||||||+|+|+..
T Consensus 32 ~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 32 MKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4678999999999999999999999998864
No 55
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.39 E-value=6.4e-15 Score=77.86 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=29.7
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKM 34 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~ 34 (61)
+..+||..+||++.+|+|||||||+|+|+....
T Consensus 33 ~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 33 AKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 467899999999999999999999999997654
No 56
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.39 E-value=6.1e-15 Score=77.94 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=29.0
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHK 33 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~ 33 (61)
+..+||..+||++.+|+|||||||+|+|+...
T Consensus 39 ~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 39 EKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 45789999999999999999999999998654
No 57
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.39 E-value=4.3e-15 Score=82.30 Aligned_cols=31 Identities=19% Similarity=0.406 Sum_probs=28.5
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEH 32 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~ 32 (61)
+..+||..|||++.+|+|||||||+|+|+..
T Consensus 54 ~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 54 EYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 4678999999999999999999999999864
No 58
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.39 E-value=4.7e-15 Score=75.90 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=25.4
Q ss_pred chhhhhcCCCCCccceeeccccchhHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWK 29 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~k 29 (61)
+..+||..|||++.+|+|||||||+|+|
T Consensus 34 ~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 34 EKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 4678999999999999999999999986
No 59
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.36 E-value=2.5e-14 Score=77.52 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=29.9
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKMA 35 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~~ 35 (61)
|..+||..+||++.+|+|||||||+|+++.....
T Consensus 39 ~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 39 EKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred HHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 4578999999999999999999999999876543
No 60
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.36 E-value=3.6e-15 Score=77.02 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=26.9
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKK 30 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr 30 (61)
+..+||..+||++.+|+|||||||+|+|+
T Consensus 35 ~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 35 AKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46789999999999999999999999876
No 61
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.35 E-value=2.6e-14 Score=78.94 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=30.5
Q ss_pred chhhhhcCCC---------------CCccceeeccccchhHHHHHhhhh
Q psy12003 2 NLLRDKNPPR---------------GTERQIKIWFQNRRMKWKKEHKMA 35 (61)
Q Consensus 2 ~~~eLA~~l~---------------Lte~~VqvWFqNrRak~kr~~~~~ 35 (61)
+..+||..|+ |++.+|+|||||||+|+|+.....
T Consensus 36 ~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~~ 84 (95)
T 2cuf_A 36 KREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIA 84 (95)
T ss_dssp HHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 4578999999 999999999999999999988753
No 62
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.34 E-value=1.2e-14 Score=78.63 Aligned_cols=32 Identities=28% Similarity=0.191 Sum_probs=29.0
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHK 33 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~ 33 (61)
+..+||..+||++.+|+|||||||+|+|+...
T Consensus 34 ~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 34 GLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 46789999999999999999999999999754
No 63
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.34 E-value=9.5e-15 Score=87.64 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=29.5
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKM 34 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~ 34 (61)
+..+||..|+|++++|+|||||||+|+||..+.
T Consensus 128 ~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 128 EITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred HHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 467899999999999999999999999997653
No 64
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.32 E-value=1.8e-14 Score=85.97 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=27.8
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKE 31 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~ 31 (61)
+..+||..|||++.+|+|||||||+|+||.
T Consensus 130 ~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 130 DITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 467899999999999999999999999974
No 65
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.30 E-value=2.1e-14 Score=84.71 Aligned_cols=30 Identities=23% Similarity=0.491 Sum_probs=27.7
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKE 31 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~ 31 (61)
+..+||..|||++++|+|||||||+|+||+
T Consensus 116 ~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 116 EIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 467899999999999999999999999974
No 66
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.30 E-value=3.9e-14 Score=77.10 Aligned_cols=28 Identities=36% Similarity=0.318 Sum_probs=26.2
Q ss_pred chhhhhcCCCCCccceeeccccchhHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWK 29 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~k 29 (61)
|..+||..+||++.+|+|||||||+|+|
T Consensus 59 ~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 59 GLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 4678999999999999999999999987
No 67
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.30 E-value=6.4e-14 Score=83.24 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=27.3
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKE 31 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~ 31 (61)
+..+||..+||++.+|+|||||||+|+||.
T Consensus 125 ~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 125 QITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCChhheeeccccccccccCC
Confidence 467899999999999999999999999974
No 68
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.28 E-value=4.5e-14 Score=83.40 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=27.1
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKK 30 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr 30 (61)
+..+||..|||++.+|+|||||||+|+||
T Consensus 122 ~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 122 EITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 46789999999999999999999999986
No 69
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.9e-13 Score=76.22 Aligned_cols=27 Identities=33% Similarity=0.371 Sum_probs=24.0
Q ss_pred CCCccceeeccccchhHHHHHhhhhcc
Q psy12003 11 RGTERQIKIWFQNRRMKWKKEHKMASM 37 (61)
Q Consensus 11 ~Lte~~VqvWFqNrRak~kr~~~~~~~ 37 (61)
.|+|.+|+|||||||+++|+..+....
T Consensus 65 ~lte~~V~~WFqNRR~k~kr~~~~~~~ 91 (102)
T 2da6_A 65 LVTEVRVYNWFANRRKEEAFRQKLAMD 91 (102)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccceeeeecchHHHHHHhhHhhhc
Confidence 799999999999999999998776544
No 70
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.27 E-value=7e-14 Score=73.16 Aligned_cols=32 Identities=19% Similarity=0.127 Sum_probs=28.1
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHK 33 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~ 33 (61)
+..+||..+||++.+|++||||||+|+|+...
T Consensus 30 ~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 30 QKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 45689999999999999999999999998643
No 71
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.17 E-value=4.4e-12 Score=69.90 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=30.2
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhhhc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKMAS 36 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~~~ 36 (61)
|-.+||..+||++.||++||+|+|+|+++......
T Consensus 37 ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 37 EKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp HHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 34689999999999999999999999998765443
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.15 E-value=2.4e-13 Score=80.98 Aligned_cols=33 Identities=9% Similarity=-0.055 Sum_probs=27.8
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHhhh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEHKM 34 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~~~ 34 (61)
+..+||..|||++.+|+|||||||+|+|+....
T Consensus 126 ~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 126 LQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHTSSCC---
T ss_pred HHHHHHHHHCcCHHHhhhcChhhhccccccCCC
Confidence 456899999999999999999999999987653
No 73
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=6.5e-13 Score=70.45 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=24.4
Q ss_pred chhhhhcCCCCCccceeeccccchhH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMK 27 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak 27 (61)
||.+||..+||++.+|||||||||++
T Consensus 34 ei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 34 ELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 78999999999999999999999973
No 74
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.11 E-value=1.7e-12 Score=68.66 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=23.9
Q ss_pred chhhhhcCCCCCccceeeccccchhHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKW 28 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~ 28 (61)
.+-+||++|||++++|||||||||.--
T Consensus 37 ~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 37 AIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCHHHHHHhhccceeee
Confidence 356899999999999999999999753
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.07 E-value=1.5e-12 Score=84.19 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=25.8
Q ss_pred chhhhhcCCCCCccceeeccccchhHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWK 29 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~k 29 (61)
+..+||.+|||+++||+|||||||+|+|
T Consensus 394 ~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 394 EKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 4578999999999999999999999975
No 76
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.05 E-value=1.4e-12 Score=72.88 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=21.3
Q ss_pred CC---CCccceeeccccchhHHHHHhhh
Q psy12003 10 PR---GTERQIKIWFQNRRMKWKKEHKM 34 (61)
Q Consensus 10 l~---Lte~~VqvWFqNrRak~kr~~~~ 34 (61)
|| |+|.+|+|||||||+++|+....
T Consensus 64 lg~~~lse~qV~vWFqNRR~k~k~k~~~ 91 (99)
T 1lfb_A 64 LGSNLVTEVRVYNWFANRRKEEAFRHKL 91 (99)
T ss_dssp TGGGCCCHHHHHHHHHHHHHTTSCCC--
T ss_pred cCccccCcceeeeccHHHHHHHHHhchh
Confidence 88 99999999999999998876553
No 77
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.76 E-value=9.3e-11 Score=72.06 Aligned_cols=28 Identities=25% Similarity=0.159 Sum_probs=24.3
Q ss_pred hhhhhcCCC---------------------CCccceeeccccchhHHHH
Q psy12003 3 LLRDKNPPR---------------------GTERQIKIWFQNRRMKWKK 30 (61)
Q Consensus 3 ~~eLA~~l~---------------------Lte~~VqvWFqNrRak~kr 30 (61)
-.+||..+| |||.+|+|||||||++.|.
T Consensus 145 Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 145 RETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp THHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 457888888 9999999999999999764
No 78
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.29 E-value=1.3e-08 Score=63.69 Aligned_cols=17 Identities=41% Similarity=0.593 Sum_probs=15.6
Q ss_pred CCccceeeccccchhHH
Q psy12003 12 GTERQIKIWFQNRRMKW 28 (61)
Q Consensus 12 Lte~~VqvWFqNrRak~ 28 (61)
|||.+|+|||||||++.
T Consensus 202 lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 202 VTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHhHHhhhhh
Confidence 89999999999999863
No 79
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=88.12 E-value=0.08 Score=24.09 Aligned_cols=25 Identities=8% Similarity=-0.136 Sum_probs=19.8
Q ss_pred hhhhhcCCCCCccceeeccccchhH
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRMK 27 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRak 27 (61)
+.++|..+|++..+|.-|+.....+
T Consensus 24 ~~~ia~~lgvs~~Tv~r~l~~~~~~ 48 (52)
T 1jko_C 24 RQQLAIIFGIGVSTLYRYFPASSIK 48 (52)
T ss_dssp HHHHHHTTSCCHHHHHHHSCTTC--
T ss_pred HHHHHHHHCCCHHHHHHHHHHcccc
Confidence 5789999999999999998765443
No 80
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=88.03 E-value=0.073 Score=30.23 Aligned_cols=28 Identities=0% Similarity=-0.139 Sum_probs=21.0
Q ss_pred chhhhhcCCCCCccceeeccccchhHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWK 29 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~k 29 (61)
...|+|..+|+++.+|+.....-|.+-|
T Consensus 111 s~~EIA~~lgis~~tV~~~l~rar~~Lr 138 (157)
T 2lfw_A 111 SPEDAAYLIEVDTSEVETLVTEALAEIE 138 (157)
T ss_dssp CHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4679999999999999977653333333
No 81
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.37 E-value=0.058 Score=28.14 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=19.0
Q ss_pred chhhhhcCCCCCccceeeccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQ 22 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFq 22 (61)
+|-+|+.+..|+..+|+-||-
T Consensus 35 Dl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 35 DIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred hHHHHHHHhCCCHHHHHHHHH
Confidence 477899999999999999995
No 82
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=82.04 E-value=0.13 Score=26.80 Aligned_cols=31 Identities=6% Similarity=-0.117 Sum_probs=24.1
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHHh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKEH 32 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~~ 32 (61)
-..|+|..+|+++.+|+.....=|.|.|+.-
T Consensus 55 s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 55 STAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999988776565555543
No 83
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=79.37 E-value=0.16 Score=24.55 Aligned_cols=20 Identities=25% Similarity=0.291 Sum_probs=18.3
Q ss_pred hhhhhcCCCCCccceeeccc
Q psy12003 3 LLRDKNPPRGTERQIKIWFQ 22 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFq 22 (61)
+.++|..+|++..+|.-|..
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 78999999999999999965
No 84
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=78.63 E-value=0.31 Score=27.64 Aligned_cols=29 Identities=7% Similarity=-0.154 Sum_probs=22.0
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKK 30 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr 30 (61)
...|+|..+|+++..|+.+...-|.+.|+
T Consensus 153 s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 153 THRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp SSCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 35689999999999999877655554443
No 85
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=75.58 E-value=0.15 Score=22.66 Aligned_cols=21 Identities=10% Similarity=0.222 Sum_probs=17.6
Q ss_pred chhhhhcCCCCCccceeeccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQ 22 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFq 22 (61)
-..++|..+|++..+|.-|..
T Consensus 23 s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 23 SLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHh
Confidence 356899999999999988864
No 86
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=70.63 E-value=0.23 Score=23.66 Aligned_cols=24 Identities=4% Similarity=-0.197 Sum_probs=18.8
Q ss_pred chhhhhcCCCCCccceeeccccch
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
...|+|..+|+++.+|+....+=+
T Consensus 15 s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 15 TNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp CSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHH
Confidence 356899999999999987655433
No 87
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=70.01 E-value=0.49 Score=24.23 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=17.2
Q ss_pred chhhhhcCCCCCccceeec
Q psy12003 2 NLLRDKNPPRGTERQIKIW 20 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvW 20 (61)
-|.|+|..+|++..+|+-|
T Consensus 7 ~i~e~A~~~gvs~~tlR~y 25 (81)
T 2jml_A 7 RIRTIARMTGIREATLRAW 25 (81)
T ss_dssp EHHHHHHTTSTTHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHH
Confidence 4679999999999999988
No 88
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=69.75 E-value=0.94 Score=26.34 Aligned_cols=23 Identities=4% Similarity=-0.207 Sum_probs=0.0
Q ss_pred chhhhhcCCCCCccceeeccccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNR 24 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNr 24 (61)
-+.|+|..+|+++.+|+.+...=
T Consensus 216 s~~EIA~~lgis~~tV~~~~~ra 238 (243)
T 1l0o_C 216 TQSEVASRLGISQVQMSRLEKKI 238 (243)
T ss_dssp -----------------------
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 35789999999999999776533
No 89
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=68.99 E-value=0.38 Score=26.44 Aligned_cols=30 Identities=13% Similarity=-0.098 Sum_probs=22.8
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKE 31 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~ 31 (61)
...|+|..+|+++.+|+.....=+.+-|+.
T Consensus 126 s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 126 SYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 467999999999999998766555554443
No 90
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=68.56 E-value=0.59 Score=26.58 Aligned_cols=29 Identities=3% Similarity=-0.155 Sum_probs=22.3
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKK 30 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr 30 (61)
-..|+|..+|+++.+|+.+...=|.+-|+
T Consensus 158 s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 158 SYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46799999999999999876655555444
No 91
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=68.49 E-value=0.32 Score=22.74 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=16.7
Q ss_pred hhhhhcCCCCCccceeeccc
Q psy12003 3 LLRDKNPPRGTERQIKIWFQ 22 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFq 22 (61)
..|+|..+|++..+|..|+.
T Consensus 34 ~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 34 VQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 56889999999999987754
No 92
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=67.59 E-value=0.42 Score=23.67 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=18.9
Q ss_pred chhhhhcCCCCCccceeecccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQN 23 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqN 23 (61)
...|+|..||++..+|.-|..+
T Consensus 4 t~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHC
Confidence 4678999999999999998764
No 93
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=67.36 E-value=0.62 Score=25.46 Aligned_cols=30 Identities=3% Similarity=-0.172 Sum_probs=23.6
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKE 31 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~ 31 (61)
...|+|..+|+++..|+.+...-|.+-++.
T Consensus 43 s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 43 SLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 467999999999999998877656555544
No 94
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=66.73 E-value=0.38 Score=22.72 Aligned_cols=24 Identities=8% Similarity=-0.141 Sum_probs=20.2
Q ss_pred chhhhhcCCCCCccceeeccccch
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
...+||..+|++...|.-|..+++
T Consensus 16 s~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 16 SQSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 357899999999999999988764
No 95
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=64.20 E-value=0.4 Score=23.16 Aligned_cols=26 Identities=8% Similarity=-0.101 Sum_probs=19.4
Q ss_pred chhhhhcCCCCCccceeeccccchhH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMK 27 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak 27 (61)
...|+|..+|+++..|+.+...-+.+
T Consensus 33 s~~eIA~~lgis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 33 SYADAAAVCGCPVGTIRSRVARARDA 58 (70)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45789999999999998765533333
No 96
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=63.56 E-value=0.55 Score=25.79 Aligned_cols=30 Identities=3% Similarity=-0.134 Sum_probs=23.8
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKKE 31 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr~ 31 (61)
...|+|..+|+++.+|+.+...-|.+-++.
T Consensus 40 s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 40 SLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999887666655544
No 97
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=62.10 E-value=0.44 Score=23.68 Aligned_cols=24 Identities=8% Similarity=-0.144 Sum_probs=18.7
Q ss_pred chhhhhcCCCCCccceeeccccch
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
...|+|..+|+++.+|+.....=+
T Consensus 33 s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 33 PNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 467899999999999987655333
No 98
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=61.96 E-value=0.95 Score=26.37 Aligned_cols=29 Identities=0% Similarity=-0.135 Sum_probs=22.2
Q ss_pred chhhhhcCCCCCccceeeccccchhHHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWKK 30 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~kr 30 (61)
-+.|+|..+|+++.+|+.....=+.+-|+
T Consensus 205 s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 205 PAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 46799999999999999876655555444
No 99
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=61.77 E-value=0.48 Score=23.53 Aligned_cols=26 Identities=15% Similarity=-0.116 Sum_probs=19.6
Q ss_pred chhhhhcCCCCCccceeeccccchhH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMK 27 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak 27 (61)
-..|+|..+|+++.+|+.+...=+.|
T Consensus 32 s~~eIA~~l~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 32 TLEEVGAYFGVTRERIRQIENKALRK 57 (73)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 46789999999999999765433333
No 100
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=61.55 E-value=0.55 Score=22.24 Aligned_cols=24 Identities=8% Similarity=-0.038 Sum_probs=20.2
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
..+||..+|++...|.-|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 568999999999999999887654
No 101
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=61.15 E-value=0.39 Score=25.32 Aligned_cols=26 Identities=12% Similarity=-0.033 Sum_probs=19.6
Q ss_pred chhhhhcCCCCCccceeeccccchhH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMK 27 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak 27 (61)
...|+|..+|+++.+|+....+=+.|
T Consensus 44 s~~eIA~~l~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 44 TNKQIADRMFLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45789999999999998765533333
No 102
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=60.69 E-value=0.74 Score=26.05 Aligned_cols=18 Identities=11% Similarity=-0.175 Sum_probs=16.1
Q ss_pred CchhhhhcCCCCCcccee
Q psy12003 1 MNLLRDKNPPRGTERQIK 18 (61)
Q Consensus 1 ~~~~eLA~~l~Lte~~Vq 18 (61)
+++.+||++-+||+++|.
T Consensus 93 ~n~~eLArkYgLSer~I~ 110 (129)
T 1rr7_A 93 RNVSELTTRYGVTFNTVY 110 (129)
T ss_dssp SCHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHCCCHHHHH
Confidence 468999999999999886
No 103
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=59.92 E-value=0.35 Score=23.74 Aligned_cols=21 Identities=14% Similarity=-0.077 Sum_probs=17.4
Q ss_pred chhhhhcCCCCCccceeeccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQ 22 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFq 22 (61)
-+.|+|..+|+++.+|+.+..
T Consensus 27 s~~eIA~~lgis~~tV~~~~~ 47 (68)
T 2p7v_B 27 TLEEVGKQFDVTRERIRQIEA 47 (68)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 467899999999999987644
No 104
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=59.79 E-value=0.47 Score=24.33 Aligned_cols=22 Identities=14% Similarity=-0.032 Sum_probs=18.0
Q ss_pred chhhhhcCCCCCccceeecccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQN 23 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqN 23 (61)
...|+|..+|+++.+|+....+
T Consensus 38 s~~eIA~~l~is~~tV~~~l~r 59 (82)
T 1je8_A 38 PNKMIARRLDITESTVKVHVKH 59 (82)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 4678999999999999876553
No 105
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=59.18 E-value=0.31 Score=25.33 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=17.9
Q ss_pred chhhhhcCCCCCccceeecccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQN 23 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqN 23 (61)
...|+|..+|+++.+|+....+
T Consensus 46 s~~eIA~~l~is~~tV~~~l~r 67 (91)
T 2rnj_A 46 SNQEIASASHITIKTVKTHVSN 67 (91)
T ss_dssp CTTHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 4578999999999999876553
No 106
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=58.39 E-value=1 Score=21.89 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=19.7
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..+||..+|++...|.-|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999988763
No 107
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=58.29 E-value=0.68 Score=22.50 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=20.3
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
..+||..+|++...|.-|..+++.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 478999999999999999887654
No 108
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=56.87 E-value=0.73 Score=22.02 Aligned_cols=24 Identities=4% Similarity=-0.112 Sum_probs=20.0
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
..+||..+|++...|.-|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 468899999999999988877654
No 109
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=56.65 E-value=1.2 Score=22.17 Aligned_cols=24 Identities=4% Similarity=-0.065 Sum_probs=20.7
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
..+||..+|++...|.-|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 468999999999999999887765
No 110
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=56.47 E-value=0.69 Score=23.10 Aligned_cols=25 Identities=8% Similarity=-0.035 Sum_probs=21.8
Q ss_pred CchhhhhcCCCCCccceeeccccch
Q psy12003 1 MNLLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 1 ~~~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
+.+.+||..+|++..+|--++.+++
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCC
Confidence 3578999999999999998888876
No 111
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=55.85 E-value=1 Score=22.91 Aligned_cols=23 Identities=4% Similarity=-0.140 Sum_probs=19.8
Q ss_pred chhhhhcCCCCCccceeeccccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNR 24 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNr 24 (61)
-+.+||..+|++...|.-|..+.
T Consensus 24 T~~~LA~~~Gvs~stls~~~~~~ 46 (74)
T 1neq_A 24 SLSALSRQFGYAPTTLANALERH 46 (74)
T ss_dssp CHHHHHHHHSSCHHHHHHTTTSS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCC
Confidence 47899999999999999997753
No 112
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=55.71 E-value=0.81 Score=22.16 Aligned_cols=24 Identities=8% Similarity=-0.038 Sum_probs=20.4
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
..+||..+|++...|.-|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 568999999999999999887654
No 113
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=55.55 E-value=0.81 Score=22.27 Aligned_cols=23 Identities=9% Similarity=-0.203 Sum_probs=19.5
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..+||..+|++...|.-|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 56899999999999998887764
No 114
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=55.05 E-value=0.81 Score=21.72 Aligned_cols=25 Identities=12% Similarity=0.003 Sum_probs=20.1
Q ss_pred chhhhhcCCCCCccceeeccccchh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
...+||..+|++...|.-|..+++.
T Consensus 16 sq~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 16 NQAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3568999999999999888776654
No 115
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=54.45 E-value=0.68 Score=24.88 Aligned_cols=22 Identities=5% Similarity=-0.132 Sum_probs=18.0
Q ss_pred chhhhhcCCCCCccceeecccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQN 23 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqN 23 (61)
...|+|..|++++.+|+....+
T Consensus 51 s~~EIA~~L~iS~~TV~~~l~r 72 (99)
T 1p4w_A 51 LVTEIAKKLNRSIKTISSQKKS 72 (99)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3578999999999999976553
No 116
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=53.07 E-value=1.5 Score=22.73 Aligned_cols=17 Identities=6% Similarity=-0.023 Sum_probs=15.0
Q ss_pred chhhhhcCCCCCcccee
Q psy12003 2 NLLRDKNPPRGTERQIK 18 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~Vq 18 (61)
.+.|||..+++++.+|+
T Consensus 18 sv~eLa~~l~VS~~TIR 34 (78)
T 1xn7_A 18 EAAQISQTLNTPQPMIN 34 (78)
T ss_dssp CHHHHHHHTTCCHHHHH
T ss_pred cHHHHHHHHCcCHHHHH
Confidence 46799999999999995
No 117
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=52.81 E-value=0.61 Score=22.72 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=17.9
Q ss_pred chhhhhcCCCCCccceeecccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQN 23 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqN 23 (61)
...|+|..+|+++..|+.+...
T Consensus 28 s~~eIA~~l~is~~tV~~~~~~ 49 (74)
T 1fse_A 28 TTKEIASELFISEKTVRNHISN 49 (74)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHH
Confidence 3578999999999999876653
No 118
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=52.79 E-value=0.94 Score=22.08 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=20.2
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..+||..+|++...|.-|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999988876
No 119
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=52.27 E-value=0.98 Score=23.25 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=20.6
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
..+||..+|++...|.-|..+++.
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCC
Confidence 468999999999999999887654
No 120
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=52.11 E-value=0.46 Score=24.55 Aligned_cols=21 Identities=14% Similarity=-0.135 Sum_probs=17.7
Q ss_pred chhhhhcCCCCCccceeeccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQ 22 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFq 22 (61)
-+.|+|..+|+++.+|+.+..
T Consensus 40 s~~EIA~~lgis~~tV~~~~~ 60 (87)
T 1tty_A 40 TLEEVGQYFNVTRERIRQIEV 60 (87)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHH
Confidence 467999999999999997654
No 121
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=52.08 E-value=1.6 Score=21.81 Aligned_cols=24 Identities=4% Similarity=-0.063 Sum_probs=21.0
Q ss_pred chhhhhcCCCCCccceeeccccch
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
-|.+||..+|++..+|--++.++.
T Consensus 11 t~~diA~~aGVS~sTVSr~ln~~~ 34 (67)
T 2l8n_A 11 TMKDVALKAKVSTATVSRALMNPD 34 (67)
T ss_dssp CHHHHHHHTTCCHHHHHHTTTCCC
T ss_pred CHHHHHHHHCCCHHHHHHHHcCCC
Confidence 478999999999999999988873
No 122
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=51.91 E-value=1.2 Score=22.50 Aligned_cols=23 Identities=4% Similarity=0.027 Sum_probs=20.5
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..+||..+|++...|.-|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999998876
No 123
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=51.75 E-value=0.94 Score=23.97 Aligned_cols=19 Identities=11% Similarity=0.267 Sum_probs=16.6
Q ss_pred hhhhhcCCCCCccceeecc
Q psy12003 3 LLRDKNPPRGTERQIKIWF 21 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWF 21 (61)
+.++|..+|+++.+|..|.
T Consensus 33 ~~~va~~~gIs~~tl~~W~ 51 (108)
T 2rn7_A 33 ICSIAPKIGCTPETLRVWV 51 (108)
T ss_dssp HHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 5789999999999998884
No 124
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=51.64 E-value=0.93 Score=23.56 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=17.3
Q ss_pred hhhhhcCCCCCccceeeccc
Q psy12003 3 LLRDKNPPRGTERQIKIWFQ 22 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFq 22 (61)
+.++|..+|++..+|.-|..
T Consensus 26 ~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 26 LQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 67899999999999998853
No 125
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=51.62 E-value=0.91 Score=23.44 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=17.6
Q ss_pred hhhhhcCCCCCccceeeccc
Q psy12003 3 LLRDKNPPRGTERQIKIWFQ 22 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFq 22 (61)
+.++|..+|++..+|.-|..
T Consensus 41 ~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 41 KASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 57899999999999999963
No 126
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=49.80 E-value=1.3 Score=23.15 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=18.0
Q ss_pred chhhhhcCCCCCccceeecccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQN 23 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqN 23 (61)
.|.+||..+|++++.+.-.|+.
T Consensus 21 ~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 21 TLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 4789999999999988766654
No 127
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=49.70 E-value=1.1 Score=21.48 Aligned_cols=23 Identities=4% Similarity=-0.312 Sum_probs=19.2
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..+||..+|++...|.-|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46889999999999988887764
No 128
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=48.92 E-value=0.66 Score=23.14 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=20.8
Q ss_pred hhhhhcCCCCCccceeeccccchhH
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRMK 27 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRak 27 (61)
..+||..+|++...|.-|..+++..
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~~p 38 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGRVP 38 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCCCC
Confidence 3689999999999999998876643
No 129
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=48.75 E-value=6.6 Score=16.47 Aligned_cols=13 Identities=31% Similarity=0.958 Sum_probs=9.9
Q ss_pred ccchhHHHHHhhh
Q psy12003 22 QNRRMKWKKEHKM 34 (61)
Q Consensus 22 qNrRak~kr~~~~ 34 (61)
.|||-+|+..+..
T Consensus 7 RnRRRRWR~Rq~q 19 (26)
T 1etf_B 7 RNRRRRWRERQRA 19 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 4888999887654
No 130
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=47.84 E-value=1.3 Score=21.87 Aligned_cols=24 Identities=8% Similarity=-0.292 Sum_probs=20.1
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
..+||..+|++...|.-|..+++.
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~~ 49 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFERR 49 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 468999999999999988887653
No 131
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=47.41 E-value=2.1 Score=22.72 Aligned_cols=17 Identities=6% Similarity=-0.077 Sum_probs=14.9
Q ss_pred chhhhhcCCCCCcccee
Q psy12003 2 NLLRDKNPPRGTERQIK 18 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~Vq 18 (61)
.+.|||..+++++.+|+
T Consensus 18 sv~eLA~~l~VS~~TIR 34 (87)
T 2k02_A 18 EAKQLSARLQTPQPLID 34 (87)
T ss_dssp EHHHHHHHTTCCHHHHH
T ss_pred cHHHHHHHHCcCHHHHH
Confidence 46799999999999995
No 132
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=47.12 E-value=1.4 Score=24.70 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=17.7
Q ss_pred CchhhhhcCCCCCccceeec
Q psy12003 1 MNLLRDKNPPRGTERQIKIW 20 (61)
Q Consensus 1 ~~~~eLA~~l~Lte~~VqvW 20 (61)
|-|-|+|..+|++..+|+-|
T Consensus 1 ~~I~e~A~~~gvs~~tLR~y 20 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFY 20 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHH
Confidence 45789999999999999888
No 133
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=46.72 E-value=1.2 Score=23.52 Aligned_cols=20 Identities=5% Similarity=-0.160 Sum_probs=17.6
Q ss_pred hhhhhcCCCCCccceeeccc
Q psy12003 3 LLRDKNPPRGTERQIKIWFQ 22 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFq 22 (61)
+.++|..++++..+|.-|+.
T Consensus 36 ~~~ia~~lgis~~Tv~~w~~ 55 (128)
T 1pdn_C 36 PCVISRQLRVSHGCVSKILN 55 (128)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 56889999999999999975
No 134
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=46.53 E-value=2.9 Score=22.66 Aligned_cols=18 Identities=0% Similarity=-0.045 Sum_probs=15.2
Q ss_pred CchhhhhcCCCCCcccee
Q psy12003 1 MNLLRDKNPPRGTERQIK 18 (61)
Q Consensus 1 ~~~~eLA~~l~Lte~~Vq 18 (61)
|-+.|||..+++++.+|-
T Consensus 40 ~si~elA~~~~vS~aTv~ 57 (111)
T 2o3f_A 40 STVNEISALANSSDAAVI 57 (111)
T ss_dssp CCHHHHHHHTTCCHHHHH
T ss_pred cCHHHHHHHHCCCHHHHH
Confidence 457899999999999885
No 135
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=46.42 E-value=1.2 Score=22.75 Aligned_cols=23 Identities=4% Similarity=-0.113 Sum_probs=18.3
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..+||..+|++...|.-|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46788888888888888877654
No 136
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=45.80 E-value=1.3 Score=23.91 Aligned_cols=22 Identities=9% Similarity=0.246 Sum_probs=18.7
Q ss_pred chhhhhcCCCCCccceeecccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQN 23 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqN 23 (61)
.+.++|..+|++..+|.-|++.
T Consensus 24 s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 24 SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHS
T ss_pred CHHHHHHHHCcCHHHHHHHHHc
Confidence 3578899999999999999864
No 137
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=45.54 E-value=1.9 Score=24.23 Aligned_cols=21 Identities=5% Similarity=-0.148 Sum_probs=18.3
Q ss_pred hhhhhcCCCCCccceeecccc
Q psy12003 3 LLRDKNPPRGTERQIKIWFQN 23 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqN 23 (61)
+.++|..++++..+|.-|++.
T Consensus 44 ~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 44 PCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp HHHHHHHHTCCSHHHHHHHCC
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 568899999999999999764
No 138
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=45.43 E-value=3.8 Score=21.70 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=16.6
Q ss_pred hhhhhcCCCCCcccee-eccccch
Q psy12003 3 LLRDKNPPRGTERQIK-IWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~Vq-vWFqNrR 25 (61)
.-++|+++||++..|. |=-.|.|
T Consensus 15 wK~~~R~LGlse~~Id~I~~~~~~ 38 (86)
T 3oq9_A 15 AKKFARENNIKEGKIDEIMHDSIQ 38 (86)
T ss_dssp HHHHHHTTTSCHHHHHHHHHTCTT
T ss_pred HHHHHHHcCCCHhHHHHHHHhCCC
Confidence 4578999999999887 4444433
No 139
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=44.83 E-value=1.5 Score=22.87 Aligned_cols=26 Identities=4% Similarity=-0.109 Sum_probs=21.4
Q ss_pred chhhhhcCCCCCccceeeccccchhH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMK 27 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak 27 (61)
-..+||..+|++...|.-|..+++..
T Consensus 39 Tq~eLA~~~GiS~~tis~iE~G~~~s 64 (88)
T 3t76_A 39 KKGELREAVGVSKSTFAKLGKNENVS 64 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCcC
Confidence 35789999999999999998886643
No 140
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=44.71 E-value=1.6 Score=21.47 Aligned_cols=23 Identities=9% Similarity=-0.184 Sum_probs=19.9
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..+||..+|++...|.-|-.+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46899999999999999988765
No 141
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=44.40 E-value=1.4 Score=23.68 Aligned_cols=19 Identities=5% Similarity=0.034 Sum_probs=16.9
Q ss_pred chhhhhcCCCCCccceeec
Q psy12003 2 NLLRDKNPPRGTERQIKIW 20 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvW 20 (61)
-+.|+|..+|++..+++-|
T Consensus 4 ~i~e~A~~~gvs~~tLR~y 22 (109)
T 1r8d_A 4 QVKQVAEISGVSIRTLHHY 22 (109)
T ss_dssp CHHHHHHHHSCCHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHH
Confidence 4778999999999999887
No 142
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=43.87 E-value=1.6 Score=21.56 Aligned_cols=23 Identities=4% Similarity=-0.214 Sum_probs=19.3
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..+||..+|++...|.-|-.+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46899999999999998887764
No 143
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=43.64 E-value=1.1 Score=27.27 Aligned_cols=26 Identities=12% Similarity=-0.194 Sum_probs=20.0
Q ss_pred chhhhhcCCCCCccceeeccccchhH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMK 27 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak 27 (61)
-..|+|..||+++.+|++...+=|.|
T Consensus 214 s~~EIA~~L~iS~~TVk~~l~ra~~k 239 (258)
T 3clo_A 214 SSKEIAATLYISVNTVNRHRQNILEK 239 (258)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45799999999999999765544433
No 144
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=43.62 E-value=8.1 Score=15.06 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=10.0
Q ss_pred ccceeeccccchh
Q psy12003 14 ERQIKIWFQNRRM 26 (61)
Q Consensus 14 e~~VqvWFqNrRa 26 (61)
...|.|-+.|||.
T Consensus 3 kkpvpiiycnrrt 15 (21)
T 8tfv_A 3 KKPVPIIYCNRRT 15 (26)
T ss_dssp CCCCCCEEEEGGG
T ss_pred CCcccEEEEcCcc
Confidence 4567888899986
No 145
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=43.20 E-value=1.5 Score=23.58 Aligned_cols=20 Identities=10% Similarity=-0.006 Sum_probs=17.3
Q ss_pred CchhhhhcCCCCCccceeec
Q psy12003 1 MNLLRDKNPPRGTERQIKIW 20 (61)
Q Consensus 1 ~~~~eLA~~l~Lte~~VqvW 20 (61)
|-+-|+|..+|++..+++-|
T Consensus 2 ~~i~e~A~~~gvs~~tLR~y 21 (108)
T 2vz4_A 2 YSVGQVAGFAGVTVRTLHHY 21 (108)
T ss_dssp BCHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHH
Confidence 34778999999999999887
No 146
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=43.07 E-value=1.5 Score=21.24 Aligned_cols=19 Identities=5% Similarity=0.024 Sum_probs=17.2
Q ss_pred hhhhhcCCCCCccceeecc
Q psy12003 3 LLRDKNPPRGTERQIKIWF 21 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWF 21 (61)
-.+||..+|++...|--|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 3689999999999999998
No 147
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=42.95 E-value=1.4 Score=22.51 Aligned_cols=29 Identities=10% Similarity=0.097 Sum_probs=23.0
Q ss_pred hhhhhcCCCCCccceeeccccchhHHHHH
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRMKWKKE 31 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRak~kr~ 31 (61)
..+||..||++...|--|..++.....+.
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~iP~~~~ 41 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGEIPPLRQ 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCCCHHHH
Confidence 46899999999999999987665555444
No 148
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=42.67 E-value=5.3 Score=22.53 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=17.9
Q ss_pred hhhhcCCCCCccceeeccccch
Q psy12003 4 LRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 4 ~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..+|..+|++..++++|.=..|
T Consensus 73 ~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 73 QSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHhCCCcccEEEEEeecC
Confidence 3468889999999999976555
No 149
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=42.66 E-value=2.8 Score=22.11 Aligned_cols=16 Identities=6% Similarity=0.028 Sum_probs=13.8
Q ss_pred hhhhhcCCCCCcccee
Q psy12003 3 LLRDKNPPRGTERQIK 18 (61)
Q Consensus 3 ~~eLA~~l~Lte~~Vq 18 (61)
..|||.+||++...|+
T Consensus 33 a~eLAk~LgiSk~aVr 48 (82)
T 1oyi_A 33 AAQLTRQLNMEKREVN 48 (82)
T ss_dssp HHHHHHHSSSCHHHHH
T ss_pred HHHHHHHHCcCHHHHH
Confidence 5789999999998884
No 150
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=42.46 E-value=1.7 Score=21.66 Aligned_cols=24 Identities=8% Similarity=-0.168 Sum_probs=20.1
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
..+||..+|++...|.-|..+++.
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~~ 51 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPDN 51 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 468999999999999999887543
No 151
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=41.94 E-value=2.7 Score=20.64 Aligned_cols=24 Identities=4% Similarity=-0.110 Sum_probs=19.9
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
..+||..+|++...|.-|=.+++.
T Consensus 27 q~elA~~~gvs~~tis~~E~G~~~ 50 (73)
T 3fmy_A 27 QKEASEIFGGGVNAFSRYEKGNAX 50 (73)
T ss_dssp HHHHHHHHCSCTTHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 468899999999999999777653
No 152
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=40.44 E-value=2.8 Score=22.71 Aligned_cols=18 Identities=17% Similarity=0.030 Sum_probs=15.3
Q ss_pred CchhhhhcCCCCCcccee
Q psy12003 1 MNLLRDKNPPRGTERQIK 18 (61)
Q Consensus 1 ~~~~eLA~~l~Lte~~Vq 18 (61)
|-+.|||..+++++..|-
T Consensus 36 ~si~elA~~~~vS~aTv~ 53 (107)
T 3iwf_A 36 MTSQEIANQLETSSTSII 53 (107)
T ss_dssp CCHHHHHHHHTSCHHHHH
T ss_pred CCHHHHHHHHCCCHHHHH
Confidence 457899999999999885
No 153
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=40.24 E-value=2 Score=21.43 Aligned_cols=22 Identities=9% Similarity=-0.062 Sum_probs=18.9
Q ss_pred chhhhhcCCCCCccceeecccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQN 23 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqN 23 (61)
-..+||..+|++...|.-|-.+
T Consensus 25 tq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 25 SLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHcC
Confidence 3578999999999999988877
No 154
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=40.06 E-value=2 Score=21.25 Aligned_cols=23 Identities=13% Similarity=-0.179 Sum_probs=18.8
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..+||..+|++...|.-|-.+++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 46889999999999988877653
No 155
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=40.05 E-value=9.6 Score=21.40 Aligned_cols=13 Identities=31% Similarity=0.951 Sum_probs=10.4
Q ss_pred ccchhHHHHHhhh
Q psy12003 22 QNRRMKWKKEHKM 34 (61)
Q Consensus 22 qNrRak~kr~~~~ 34 (61)
.|||.+||..+..
T Consensus 38 RNRRRRWR~RQrQ 50 (115)
T 2x7l_M 38 RNRRRRWRERQRQ 50 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHH
Confidence 5899999988663
No 156
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=39.94 E-value=3.2 Score=22.26 Aligned_cols=28 Identities=14% Similarity=-0.039 Sum_probs=20.1
Q ss_pred chhhhhcCCCCCccceeeccccchhHHH
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRMKWK 29 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRak~k 29 (61)
-+.|+|..+|++..+|+.....=..+-|
T Consensus 41 s~~EIA~~lgiS~~tVr~~~~rAlkkLR 68 (99)
T 3t72_q 41 TLEEVGKQFDVTRERIRQIEAKALRKLR 68 (99)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4679999999999999875443333333
No 157
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=39.90 E-value=2.8 Score=23.88 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=17.1
Q ss_pred chhhhhcCCCCCccceeec
Q psy12003 2 NLLRDKNPPRGTERQIKIW 20 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvW 20 (61)
-|-|+|..+|++..+|+-|
T Consensus 18 ~I~evA~~~gvs~~tLR~Y 36 (148)
T 3gpv_A 18 TIGQVAKMQHLTISQIRYY 36 (148)
T ss_dssp CHHHHHHHTTCCHHHHHHH
T ss_pred eHHHHHHHHCcCHHHHHHH
Confidence 3789999999999999988
No 158
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=39.87 E-value=2.2 Score=22.21 Aligned_cols=16 Identities=6% Similarity=-0.026 Sum_probs=13.9
Q ss_pred hhhhhcCCCCCcccee
Q psy12003 3 LLRDKNPPRGTERQIK 18 (61)
Q Consensus 3 ~~eLA~~l~Lte~~Vq 18 (61)
..|||.+||++.+.|+
T Consensus 30 ~~eLA~~Lgvsr~tV~ 45 (81)
T 1qbj_A 30 AHDLSGKLGTPKKEIN 45 (81)
T ss_dssp HHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHCcCHHHHH
Confidence 5789999999998884
No 159
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=39.84 E-value=2.1 Score=21.82 Aligned_cols=16 Identities=6% Similarity=-0.026 Sum_probs=13.8
Q ss_pred hhhhhcCCCCCcccee
Q psy12003 3 LLRDKNPPRGTERQIK 18 (61)
Q Consensus 3 ~~eLA~~l~Lte~~Vq 18 (61)
..|||..||++.+.|.
T Consensus 34 ~~eLA~~Lgvs~~tV~ 49 (77)
T 1qgp_A 34 AHDLSGKLGTPKKEIN 49 (77)
T ss_dssp HHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHCcCHHHHH
Confidence 4789999999998884
No 160
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=39.71 E-value=1.9 Score=24.45 Aligned_cols=20 Identities=10% Similarity=0.255 Sum_probs=17.5
Q ss_pred CchhhhhcCCCCCccceeec
Q psy12003 1 MNLLRDKNPPRGTERQIKIW 20 (61)
Q Consensus 1 ~~~~eLA~~l~Lte~~VqvW 20 (61)
|-|-|+|..+|++..+|+-|
T Consensus 3 ~~I~e~A~~~gvs~~tLR~Y 22 (142)
T 3gp4_A 3 LNIKEASEKSGVSADTIRYY 22 (142)
T ss_dssp BCHHHHHHHHTSCHHHHHHH
T ss_pred CcHHHHHHHHCcCHHHHHHH
Confidence 35789999999999999987
No 161
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=39.43 E-value=1.8 Score=23.91 Aligned_cols=20 Identities=5% Similarity=-0.160 Sum_probs=17.6
Q ss_pred hhhhhcCCCCCccceeeccc
Q psy12003 3 LLRDKNPPRGTERQIKIWFQ 22 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFq 22 (61)
+.++|..+|++..+|.-|+.
T Consensus 51 ~~~iA~~lgis~~TV~rw~~ 70 (149)
T 1k78_A 51 PCDISRQLRVSHGCVSKILG 70 (149)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 57889999999999999975
No 162
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=39.24 E-value=6.3 Score=21.56 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=16.2
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
|.+||.+.|++...|--.|.|+..
T Consensus 35 ~~~IA~~agvs~~t~Y~~F~sK~~ 58 (199)
T 3on2_A 35 LRQLAREAGVSHAAPSKHFRDRQA 58 (199)
T ss_dssp HHHHHHHTC-----CCCSSSSHHH
T ss_pred HHHHHHHhCCChHHHHHHhCCHHH
Confidence 678999999999999999998743
No 163
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=38.46 E-value=2.5 Score=21.56 Aligned_cols=24 Identities=4% Similarity=-0.104 Sum_probs=20.5
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
..+||..+|++...|.-|..+++.
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 468899999999999999888764
No 164
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=38.45 E-value=2 Score=21.81 Aligned_cols=25 Identities=8% Similarity=-0.055 Sum_probs=20.6
Q ss_pred chhhhhcCCCCCccceeeccccchh
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
-..+||..+|++...|.-|..+++.
T Consensus 28 sq~~lA~~~gis~~~is~~e~g~~~ 52 (91)
T 1x57_A 28 TQKDLATKINEKPQVIADYESGRAI 52 (91)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3568999999999999999887653
No 165
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=37.89 E-value=1.6 Score=20.81 Aligned_cols=20 Identities=5% Similarity=-0.175 Sum_probs=16.4
Q ss_pred hhhhhcCCCCCccceeeccc
Q psy12003 3 LLRDKNPPRGTERQIKIWFQ 22 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFq 22 (61)
+.++|..+|++...|--|..
T Consensus 16 ~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 56889999999988877763
No 166
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=37.17 E-value=2.5 Score=21.31 Aligned_cols=23 Identities=4% Similarity=-0.103 Sum_probs=19.2
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..+||..+|++...|.-|..+++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46889999999999998887754
No 167
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=35.97 E-value=3.3 Score=19.64 Aligned_cols=23 Identities=9% Similarity=0.016 Sum_probs=18.3
Q ss_pred hhhhhcCCC--CCccceeeccccch
Q psy12003 3 LLRDKNPPR--GTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~--Lte~~VqvWFqNrR 25 (61)
..+||..+| ++...|.-|-.+++
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~~ 48 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGDR 48 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCCC
Confidence 468899999 99998888876654
No 168
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=35.86 E-value=2.9 Score=22.41 Aligned_cols=22 Identities=14% Similarity=0.006 Sum_probs=17.9
Q ss_pred chhhhhcCCCCCccceeecccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQN 23 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqN 23 (61)
.|.+||..+|++++.+.-.|+.
T Consensus 25 ~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 25 TLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 4789999999999988766643
No 169
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=35.86 E-value=3.1 Score=20.49 Aligned_cols=15 Identities=0% Similarity=0.062 Sum_probs=12.4
Q ss_pred hhhhhcCCCCCccce
Q psy12003 3 LLRDKNPPRGTERQI 17 (61)
Q Consensus 3 ~~eLA~~l~Lte~~V 17 (61)
+.|||..+|++...|
T Consensus 28 ~~eLA~~lglsr~tv 42 (67)
T 2heo_A 28 IFQLVKKCQVPKKTL 42 (67)
T ss_dssp HHHHHHHHCSCHHHH
T ss_pred HHHHHHHHCcCHHHH
Confidence 578999999997666
No 170
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=35.69 E-value=2.7 Score=21.65 Aligned_cols=16 Identities=6% Similarity=-0.103 Sum_probs=13.5
Q ss_pred hhhhhcCCCCCcccee
Q psy12003 3 LLRDKNPPRGTERQIK 18 (61)
Q Consensus 3 ~~eLA~~l~Lte~~Vq 18 (61)
+.|||..+|+++.+|+
T Consensus 27 v~EIa~~lgvS~~TVr 42 (77)
T 2jt1_A 27 TRDIADAAGLSIYQVR 42 (77)
T ss_dssp HHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHCCCHHHHH
Confidence 6789999999988774
No 171
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=35.21 E-value=2 Score=22.46 Aligned_cols=20 Identities=10% Similarity=-0.009 Sum_probs=16.1
Q ss_pred chhhhhcCCCCCccceeecc
Q psy12003 2 NLLRDKNPPRGTERQIKIWF 21 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWF 21 (61)
-..|+|..|++++.+|+.-.
T Consensus 46 s~~eIA~~L~iS~~TV~~~~ 65 (90)
T 3ulq_B 46 TNQEIADALHLSKRSIEYSL 65 (90)
T ss_dssp CHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 35689999999999998543
No 172
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=35.02 E-value=9.3 Score=20.80 Aligned_cols=23 Identities=13% Similarity=-0.026 Sum_probs=20.6
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
|.++|.+.|++...|--.|.|+-
T Consensus 30 ~~~IA~~agvs~~tly~~F~sK~ 52 (180)
T 2fd5_A 30 VGEVMGAAGLTVGGFYAHFQSKD 52 (180)
T ss_dssp HHHHHHHTTCCGGGGGGTCSCHH
T ss_pred HHHHHHHhCCCccHHHHHCCCHH
Confidence 67899999999999999999873
No 173
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=34.78 E-value=3.7 Score=22.03 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=16.8
Q ss_pred hhhhhcCCCCCccceeecc
Q psy12003 3 LLRDKNPPRGTERQIKIWF 21 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWF 21 (61)
+.|+|+.-+|++.+|..|-
T Consensus 52 ~~e~arry~Is~s~i~~W~ 70 (95)
T 2jrt_A 52 EREALDRYSLSEEEFALWR 70 (95)
T ss_dssp HHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 6799999999999998883
No 174
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=34.52 E-value=3.1 Score=25.45 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=18.0
Q ss_pred CchhhhhcCCCCCccceeec
Q psy12003 1 MNLLRDKNPPRGTERQIKIW 20 (61)
Q Consensus 1 ~~~~eLA~~l~Lte~~VqvW 20 (61)
|.|-|+|+.+|++..+|+-|
T Consensus 1 ~~IgevA~~~Gvs~~TLRyY 20 (222)
T 2dg6_A 1 MRLADLSKRSGVSTATIKYY 20 (222)
T ss_dssp CCHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHH
Confidence 56889999999999999987
No 175
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=34.40 E-value=9.1 Score=21.08 Aligned_cols=24 Identities=0% Similarity=-0.096 Sum_probs=21.1
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
|.+||.+.|++...+--.|.|+-.
T Consensus 39 ~~~Ia~~agvs~~t~Y~~F~sK~~ 62 (211)
T 3him_A 39 TREIAASLDMSPGAVYPHYKTKES 62 (211)
T ss_dssp HHHHHHHTTCCTTSSTTTCSSHHH
T ss_pred HHHHHHHhCCCcChhhhcCCCHHH
Confidence 678999999999999999998843
No 176
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=34.39 E-value=2.1 Score=23.18 Aligned_cols=24 Identities=8% Similarity=-0.015 Sum_probs=20.1
Q ss_pred hhhcCCCCCccceeeccccchhHH
Q psy12003 5 RDKNPPRGTERQIKIWFQNRRMKW 28 (61)
Q Consensus 5 eLA~~l~Lte~~VqvWFqNrRak~ 28 (61)
++|..+|++..+|.-|..++....
T Consensus 30 ~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 30 EIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp HHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred HHHHHhCCCHHHHHHHHhchhhhc
Confidence 799999999999999987766543
No 177
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=34.23 E-value=2.5 Score=21.07 Aligned_cols=23 Identities=4% Similarity=-0.106 Sum_probs=19.9
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..+||..+|++...|.-|-.+++
T Consensus 30 q~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 30 MVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46899999999999999988776
No 178
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=33.67 E-value=7.1 Score=21.48 Aligned_cols=16 Identities=6% Similarity=-0.315 Sum_probs=13.6
Q ss_pred hhhhcCCCCCccceee
Q psy12003 4 LRDKNPPRGTERQIKI 19 (61)
Q Consensus 4 ~eLA~~l~Lte~~Vqv 19 (61)
.+||+.||+++..|..
T Consensus 39 k~LAR~LGlse~dId~ 54 (114)
T 2of5_A 39 EPMVLSLGLSQTDIYR 54 (114)
T ss_dssp HHHHHTTTCCHHHHHH
T ss_pred HHHHHHcCCCHHHHHH
Confidence 4789999999998874
No 179
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=33.59 E-value=2.5 Score=25.21 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=18.0
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
-.|+|..||+++.+|+....+=+
T Consensus 193 ~~eIa~~l~is~~tV~~~~~~~~ 215 (236)
T 2q0o_A 193 ASVTANLTGINARTVQHYLDKAR 215 (236)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHH
Confidence 46899999999999987655433
No 180
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=33.33 E-value=7.9 Score=20.88 Aligned_cols=16 Identities=6% Similarity=-0.189 Sum_probs=13.9
Q ss_pred hhhhcCCCCCccceee
Q psy12003 4 LRDKNPPRGTERQIKI 19 (61)
Q Consensus 4 ~eLA~~l~Lte~~Vqv 19 (61)
.+||+.||+++..|..
T Consensus 33 k~LAr~Lg~~~~~I~~ 48 (110)
T 1wxp_A 33 KILAPYLEMKDSEIRQ 48 (110)
T ss_dssp HHHTTTTTCCHHHHHH
T ss_pred HHHHHHhCCCHHHHHH
Confidence 5799999999998875
No 181
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=33.12 E-value=15 Score=18.98 Aligned_cols=13 Identities=31% Similarity=0.951 Sum_probs=10.1
Q ss_pred ccchhHHHHHhhh
Q psy12003 22 QNRRMKWKKEHKM 34 (61)
Q Consensus 22 qNrRak~kr~~~~ 34 (61)
.|||-+|+..+..
T Consensus 41 RNRRRRWR~RQrQ 53 (72)
T 3lph_A 41 RNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5889999887653
No 182
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=32.91 E-value=3.6 Score=21.86 Aligned_cols=23 Identities=4% Similarity=-0.243 Sum_probs=18.9
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..+||..+|++...|.-|-.+++
T Consensus 37 q~elA~~~gis~~~is~~E~G~~ 59 (114)
T 3vk0_A 37 QEELARQCGLDRTYVSAVERKRW 59 (114)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46888899999999988887765
No 183
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=32.64 E-value=2.3 Score=22.30 Aligned_cols=21 Identities=19% Similarity=-0.021 Sum_probs=17.0
Q ss_pred chhhhhcCCCCCccceeeccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQ 22 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFq 22 (61)
.|.+||..+|++++.+.-.|+
T Consensus 23 ~~~~lA~~~~~S~~~l~r~fk 43 (108)
T 3oou_A 23 SLKTLGNDFHINAVYLGQLFQ 43 (108)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 478899999999998876554
No 184
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=32.62 E-value=2.7 Score=25.06 Aligned_cols=21 Identities=0% Similarity=-0.005 Sum_probs=17.1
Q ss_pred hhhhhcCCCCCccceeecccc
Q psy12003 3 LLRDKNPPRGTERQIKIWFQN 23 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqN 23 (61)
..|+|..|++++.+|+.-.++
T Consensus 191 ~~eIa~~l~is~~tV~~~~~~ 211 (234)
T 1l3l_A 191 MEEIADVEGVKYNSVRVKLRE 211 (234)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 468999999999999866553
No 185
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=32.52 E-value=2.9 Score=23.79 Aligned_cols=19 Identities=11% Similarity=0.022 Sum_probs=16.8
Q ss_pred chhhhhcCCCCCccceeec
Q psy12003 2 NLLRDKNPPRGTERQIKIW 20 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvW 20 (61)
-|-|+|..+|++..+++-|
T Consensus 6 tI~evA~~~Gvs~~tLR~y 24 (146)
T 3hh0_A 6 LISEFASVGDVTVRALRYY 24 (146)
T ss_dssp CHHHHHHHHTCCHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHH
Confidence 4789999999999999887
No 186
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=32.50 E-value=2.9 Score=22.05 Aligned_cols=24 Identities=4% Similarity=-0.033 Sum_probs=20.0
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
..+||..+|++...|.-|-.+++.
T Consensus 25 q~~lA~~~gis~~~i~~~e~g~~~ 48 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMSGETK 48 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 468999999999999998887643
No 187
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=32.07 E-value=4.9 Score=20.21 Aligned_cols=23 Identities=4% Similarity=-0.181 Sum_probs=18.8
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..+||..+|++...|.-|-.+++
T Consensus 30 q~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 30 QADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 46899999999999988877664
No 188
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=31.93 E-value=2.4 Score=22.20 Aligned_cols=22 Identities=18% Similarity=0.028 Sum_probs=17.4
Q ss_pred chhhhhcCCCCCccceeecccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQN 23 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqN 23 (61)
.|.+||..+|++++.+.--|+.
T Consensus 20 ~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 20 TIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHH
Confidence 4788999999999988765553
No 189
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=31.91 E-value=11 Score=21.13 Aligned_cols=23 Identities=9% Similarity=0.176 Sum_probs=3.1
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
|.+||.+.|++...|--.|.++-
T Consensus 53 i~~IA~~agvs~~t~Y~~F~sK~ 75 (212)
T 2np3_A 53 LRRIAETAGVDQSLVHHFYGTKE 75 (212)
T ss_dssp ------------------CCC-C
T ss_pred HHHHHHHcCCCHHHHHHHhCCHH
Confidence 56899999999999999999883
No 190
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=31.88 E-value=3.3 Score=20.65 Aligned_cols=19 Identities=5% Similarity=-0.134 Sum_probs=16.0
Q ss_pred hhhhhcCCCCCccceeecc
Q psy12003 3 LLRDKNPPRGTERQIKIWF 21 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWF 21 (61)
..++|..||++...|--|.
T Consensus 16 q~~~A~~Lgvsq~aVS~~~ 34 (65)
T 2cw1_A 16 QEYAARALGLSQKLIEEVL 34 (65)
T ss_dssp HHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4689999999999887775
No 191
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=31.50 E-value=5.3 Score=21.06 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=19.5
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..+||..+|++...|.-|-.+++
T Consensus 44 q~~lA~~~gis~~~is~~E~g~~ 66 (117)
T 3f52_A 44 LRELAEASRVSPGYLSELERGRK 66 (117)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46899999999999998887775
No 192
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=31.41 E-value=3.2 Score=23.83 Aligned_cols=19 Identities=0% Similarity=-0.108 Sum_probs=16.5
Q ss_pred chhhhhcCCCCCccceeec
Q psy12003 2 NLLRDKNPPRGTERQIKIW 20 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvW 20 (61)
-|-|+|..+|++..+|+-|
T Consensus 13 ~i~e~A~~~gvs~~TLR~y 31 (154)
T 2zhg_A 13 TPGEVAKRSGVAVSALHFY 31 (154)
T ss_dssp CHHHHHHHHTSCHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHH
Confidence 4678999999999999887
No 193
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=31.14 E-value=3.8 Score=22.84 Aligned_cols=16 Identities=6% Similarity=-0.109 Sum_probs=13.2
Q ss_pred hhhhhcCCCCCcccee
Q psy12003 3 LLRDKNPPRGTERQIK 18 (61)
Q Consensus 3 ~~eLA~~l~Lte~~Vq 18 (61)
--+++++|||+|..|.
T Consensus 28 WK~~aRkLGLse~~Id 43 (112)
T 1ich_A 28 WKEFVKRLGLSDHEID 43 (112)
T ss_dssp HHHHHHHHTCCHHHHH
T ss_pred HHHHHHHcCCCHHHHH
Confidence 3578999999998876
No 194
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=30.91 E-value=3.6 Score=21.29 Aligned_cols=21 Identities=10% Similarity=-0.080 Sum_probs=18.8
Q ss_pred hhhhhcCCCCCccceeecccc
Q psy12003 3 LLRDKNPPRGTERQIKIWFQN 23 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqN 23 (61)
..+||..+|++...|.-|..+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 17 LSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 568999999999999999887
No 195
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=30.52 E-value=12 Score=20.54 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=21.4
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
|.+||.+.|++...|=-.|.++..
T Consensus 30 ~~~IA~~aGvs~~tlY~~F~sKe~ 53 (178)
T 4hku_A 30 LYDIASNLNVTHAALYKHYRNKED 53 (178)
T ss_dssp HHHHHHHTTSCGGGGGGTCSSHHH
T ss_pred HHHHHHHhCcCHhHHHHHCCCHHH
Confidence 678999999999999999998854
No 196
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=30.33 E-value=4 Score=21.31 Aligned_cols=21 Identities=5% Similarity=0.039 Sum_probs=16.8
Q ss_pred chhhhhcCCCCCccceeeccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQ 22 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFq 22 (61)
.|.+||..+|++++.+.--|+
T Consensus 22 ~~~~lA~~~~~S~~~l~r~fk 42 (107)
T 2k9s_A 22 DIASVAQHVCLSPSRLSHLFR 42 (107)
T ss_dssp CHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHH
Confidence 477899999999988775554
No 197
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=30.33 E-value=13 Score=21.66 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=21.2
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
|.+||.+.|++...|--.|.|+-.
T Consensus 69 ~~~IA~~aGvs~~t~Y~~F~sKe~ 92 (245)
T 3aqt_A 69 IAEITEGANIGTGTFYNYFPDREQ 92 (245)
T ss_dssp HHHHHHHTTSCGGGGGGTCSSHHH
T ss_pred HHHHHHHhCCChHHHHHHcCCHHH
Confidence 678999999999999999999743
No 198
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=30.27 E-value=3.8 Score=21.24 Aligned_cols=23 Identities=9% Similarity=-0.041 Sum_probs=18.5
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..+||..+|++...|.-|..+++
T Consensus 34 q~~lA~~~gis~~~is~~e~g~~ 56 (104)
T 3cec_A 34 TANFAEILGVSNQTIQEVINGQR 56 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCc
Confidence 46788899999988888877654
No 199
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=30.11 E-value=3.8 Score=21.48 Aligned_cols=23 Identities=13% Similarity=-0.179 Sum_probs=18.7
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..+||..+|++...|.-|-.+++
T Consensus 44 q~elA~~~gis~~~is~iE~G~~ 66 (99)
T 3g5g_A 44 QEDLAYKSNLDRTYISGIERNSR 66 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46889999999999988877654
No 200
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=29.88 E-value=4.3 Score=21.47 Aligned_cols=24 Identities=4% Similarity=-0.110 Sum_probs=20.4
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
..+||..+|++...|.-|-.+++.
T Consensus 52 q~elA~~~gis~~~is~~E~G~~~ 75 (107)
T 2jvl_A 52 QAELGKEIGETAATVASYERGTAT 75 (107)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 468999999999999999887664
No 201
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=29.80 E-value=2.8 Score=22.15 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=16.6
Q ss_pred chhhhhcCCCCCccceeeccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQ 22 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFq 22 (61)
.|.+||..+|++++.+.-.|+
T Consensus 25 ~~~~lA~~~~~S~~~l~r~fk 45 (113)
T 3oio_A 25 STDDIAYYVGVSRRQLERLFK 45 (113)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 478899999999987775554
No 202
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=29.41 E-value=4.4 Score=23.11 Aligned_cols=16 Identities=6% Similarity=-0.018 Sum_probs=12.9
Q ss_pred chhhhhcCCCCCccce
Q psy12003 2 NLLRDKNPPRGTERQI 17 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~V 17 (61)
-|.|||.++|++...+
T Consensus 97 TleeLA~~~gid~~~L 112 (160)
T 2lfc_A 97 SLESAAEQAGIVVDEL 112 (160)
T ss_dssp SHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHhCCCHHHH
Confidence 3789999999987644
No 203
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=29.25 E-value=25 Score=17.64 Aligned_cols=23 Identities=4% Similarity=-0.083 Sum_probs=18.7
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
+.+|-.+|+|++..| +-+-|.+.
T Consensus 23 v~dLL~~Lgl~~~~V-vV~vNG~~ 45 (74)
T 2l32_A 23 YADLVRAVDLSPHEV-TVLVDGRP 45 (74)
T ss_dssp HHHHHHTTCCCSSCC-CEECCCCC
T ss_pred HHHHHHHcCCCcceE-EEEECCEE
Confidence 678899999999999 77777653
No 204
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=29.22 E-value=3.8 Score=21.91 Aligned_cols=23 Identities=9% Similarity=-0.075 Sum_probs=18.8
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..+||..+|++...|.-|-.+++
T Consensus 39 q~elA~~~gis~~~is~~E~G~~ 61 (111)
T 3mlf_A 39 QKELGDLFKVSSRTIQNMEKDST 61 (111)
T ss_dssp HHHHHHHHTSCHHHHHHHHHCCT
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46889999999999988877764
No 205
>1mhm_B Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1
Probab=29.14 E-value=14 Score=19.05 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=8.9
Q ss_pred hcCCCCCccceeeccc
Q psy12003 7 KNPPRGTERQIKIWFQ 22 (61)
Q Consensus 7 A~~l~Lte~~VqvWFq 22 (61)
+.-..-+|.++.|||.
T Consensus 9 ~~~FEG~EK~LEI~F~ 24 (72)
T 1mhm_B 9 AIGFEGFEKRLEISFV 24 (72)
T ss_dssp ------CEEEEEEEEC
T ss_pred CCCcccceEEEEEEEe
Confidence 3345668899999994
No 206
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=28.83 E-value=5 Score=22.86 Aligned_cols=25 Identities=4% Similarity=-0.029 Sum_probs=21.2
Q ss_pred hhhhhcCCCCCccceeeccccchhH
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRMK 27 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRak 27 (61)
..|||..+|++...|.-|..+.+..
T Consensus 23 q~elA~~~Gis~~~i~~~e~g~~~p 47 (189)
T 2fjr_A 23 KIQLANHFDIASSSLSNRYTRGAIS 47 (189)
T ss_dssp HHHHHHHTTCCHHHHHHHHHSSSCC
T ss_pred HHHHHHHhCcCHHHHHHHHhCCCCC
Confidence 4689999999999999998877654
No 207
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=28.83 E-value=7 Score=21.46 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=20.4
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
|.+||.+.|++...+--.|.|+-
T Consensus 26 i~~IA~~agvs~~t~Y~~F~sK~ 48 (189)
T 3geu_A 26 LDDIAKSVNIKKASLYYHFDSKK 48 (189)
T ss_dssp HHHHHHHTTCCHHHHTTTCSSHH
T ss_pred HHHHHHHhCCCHHHHHHHhCCHH
Confidence 67899999999999999999873
No 208
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=28.81 E-value=12 Score=21.61 Aligned_cols=25 Identities=4% Similarity=-0.250 Sum_probs=0.0
Q ss_pred hhhhhcCCCCCccceeeccccchhH
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRMK 27 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRak 27 (61)
+.++|..||++-.+|.-|..+++.+
T Consensus 161 ~~~Ia~~l~vs~~Tvyr~l~~~~~~ 185 (193)
T 3uj3_X 161 RKQVALIYDVALSTLYKKHPAKRAH 185 (193)
T ss_dssp -------------------------
T ss_pred HHHHHHHHCcCHHHHHHHHHHhhhc
Confidence 5688999999999998888766543
No 209
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=28.73 E-value=9.9 Score=21.15 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=20.5
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
|.++|.+.|++...|--.|.|+-
T Consensus 36 ~~~IA~~agvs~~tlY~~F~sK~ 58 (217)
T 3nrg_A 36 INRITERAGIAKGSFYQYFADKK 58 (217)
T ss_dssp HHHHHHHHTCCTTGGGGTCSSHH
T ss_pred HHHHHHHhCCcHHHHHHHcCCHH
Confidence 67899999999999999999873
No 210
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=28.70 E-value=6.5 Score=20.61 Aligned_cols=16 Identities=13% Similarity=-0.006 Sum_probs=13.5
Q ss_pred hhhhcCCCCCccceee
Q psy12003 4 LRDKNPPRGTERQIKI 19 (61)
Q Consensus 4 ~eLA~~l~Lte~~Vqv 19 (61)
.+||+.||+++..|..
T Consensus 29 k~Lar~Lg~~~~~I~~ 44 (99)
T 1fad_A 29 KRLARELKVSEAKMDG 44 (99)
T ss_dssp HHHHHHTTCCHHHHHH
T ss_pred HHHHHHcCCCHHHHHH
Confidence 4789999999998864
No 211
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=28.26 E-value=4.4 Score=21.27 Aligned_cols=23 Identities=9% Similarity=0.034 Sum_probs=18.1
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..+||..+|++...|.-|..+++
T Consensus 27 q~~lA~~~gis~~~is~~e~g~~ 49 (113)
T 2eby_A 27 INELAELLHVHRNSVSALINNNR 49 (113)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46788888888888888877654
No 212
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=28.14 E-value=8.3 Score=22.41 Aligned_cols=21 Identities=14% Similarity=0.014 Sum_probs=17.5
Q ss_pred chhhhhcCCCCCccceeeccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQ 22 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFq 22 (61)
+|.+|...+++++..|+-||+
T Consensus 35 ~l~~l~~~t~~s~~ei~~l~~ 55 (214)
T 2l4h_A 35 LLAEYQDLTFLTKQEILLAHR 55 (214)
T ss_dssp HHHHHHSCCSCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHH
Confidence 578899999999999987754
No 213
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=28.01 E-value=24 Score=19.73 Aligned_cols=16 Identities=0% Similarity=-0.301 Sum_probs=13.7
Q ss_pred hhhhhcCCCCCcccee
Q psy12003 3 LLRDKNPPRGTERQIK 18 (61)
Q Consensus 3 ~~eLA~~l~Lte~~Vq 18 (61)
..+||..+|++.+.|.
T Consensus 30 ~~eLa~~lgvSr~~vr 45 (163)
T 2gqq_A 30 NVELSKRVGLSPTPCL 45 (163)
T ss_dssp TTGGGTSSSCCTTTSS
T ss_pred HHHHHHHHCcCHHHHH
Confidence 4689999999999885
No 214
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=27.97 E-value=11 Score=20.96 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=20.5
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
|.+||.+.|++...|--.|.|+-
T Consensus 42 ~~~IA~~agvs~~tlY~~F~sK~ 64 (216)
T 3qqa_A 42 LSDIIKLSGGSYSNIYDGFKSKE 64 (216)
T ss_dssp HHHHHHHHTTSCCSSSCSCCSHH
T ss_pred HHHHHHHhCCCHHHHHHhcCCHH
Confidence 67899999999999999999874
No 215
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=27.58 E-value=7.3 Score=21.74 Aligned_cols=16 Identities=13% Similarity=-0.070 Sum_probs=13.1
Q ss_pred hhhhhcCCCCCcccee
Q psy12003 3 LLRDKNPPRGTERQIK 18 (61)
Q Consensus 3 ~~eLA~~l~Lte~~Vq 18 (61)
.-+||+++||++..|.
T Consensus 23 wK~laR~LGlse~~Id 38 (115)
T 3ezq_A 23 VKGFVRKNGVNEAKID 38 (115)
T ss_dssp HHHHHHHTTCCHHHHH
T ss_pred HHHHHHHcCCCHhhHH
Confidence 3578999999998776
No 216
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=27.45 E-value=8.3 Score=21.26 Aligned_cols=16 Identities=13% Similarity=-0.002 Sum_probs=13.7
Q ss_pred hhhhhcCCCCCcccee
Q psy12003 3 LLRDKNPPRGTERQIK 18 (61)
Q Consensus 3 ~~eLA~~l~Lte~~Vq 18 (61)
..|||..+|+++..|.
T Consensus 26 ~~ela~~lg~s~~tv~ 41 (151)
T 2dbb_A 26 YRELADILNTTRQRIA 41 (151)
T ss_dssp HHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHCcCHHHHH
Confidence 5789999999998884
No 217
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=27.30 E-value=7.2 Score=21.49 Aligned_cols=16 Identities=6% Similarity=-0.315 Sum_probs=13.5
Q ss_pred hhhhcCCCCCccceee
Q psy12003 4 LRDKNPPRGTERQIKI 19 (61)
Q Consensus 4 ~eLA~~l~Lte~~Vqv 19 (61)
.+||+.||+++..|..
T Consensus 39 k~LAR~LGlse~dId~ 54 (115)
T 2o71_A 39 EPMVLSLGLSQTDIYR 54 (115)
T ss_dssp HHHHHHTTCCHHHHHH
T ss_pred HHHHHHcCCCHHHHHH
Confidence 4789999999998874
No 218
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=27.27 E-value=5.8 Score=21.83 Aligned_cols=11 Identities=36% Similarity=0.942 Sum_probs=8.7
Q ss_pred ccceeeccccc
Q psy12003 14 ERQIKIWFQNR 24 (61)
Q Consensus 14 e~~VqvWFqNr 24 (61)
...|+||.||-
T Consensus 51 qgdvkvwmqnl 61 (127)
T 2jpf_A 51 QGDVKVWMQNL 61 (127)
T ss_dssp CHHHHHHHHHH
T ss_pred cccHHHHHHHH
Confidence 34689999995
No 219
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=27.23 E-value=4.5 Score=20.86 Aligned_cols=24 Identities=13% Similarity=-0.035 Sum_probs=19.3
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
..+||..+|++...|.-|-.+++.
T Consensus 46 q~elA~~lgvs~~~is~~E~G~~~ 69 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGRSE 69 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 468899999999999988776643
No 220
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=27.12 E-value=10 Score=21.29 Aligned_cols=25 Identities=8% Similarity=-0.007 Sum_probs=21.4
Q ss_pred hhhhhcCCCCCccceeeccccchhH
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRMK 27 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRak 27 (61)
|.+||.+.|++...+--.|.|+-.=
T Consensus 51 v~~IA~~agvs~~t~Y~~F~sK~~L 75 (215)
T 2qko_A 51 FRAVDVEANVPKGTASNYFPSRDDL 75 (215)
T ss_dssp HHHHHHHSSSTTTCHHHHCSCHHHH
T ss_pred HHHHHHHcCCCcchHHHhCCCHHHH
Confidence 6789999999999999999987543
No 221
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=26.99 E-value=4.1 Score=21.74 Aligned_cols=23 Identities=4% Similarity=-0.104 Sum_probs=19.9
Q ss_pred chhhhhcCCCCCccceeeccccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNR 24 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNr 24 (61)
.+.+||..+|++..+|.-++.++
T Consensus 22 ti~dlA~~~gVS~~TVsR~L~~~ 44 (93)
T 2l0k_A 22 TVRVIAKEFGVSKSTVHKDLTER 44 (93)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTH
T ss_pred CHHHHHHHHCCCHHHHHHHHcCC
Confidence 46789999999999999888875
No 222
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=26.97 E-value=6.1 Score=21.39 Aligned_cols=24 Identities=4% Similarity=-0.092 Sum_probs=19.9
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
..+||..+|++...|.-|-.+++.
T Consensus 87 q~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 87 QKEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp HHHHHHHHCSCTTHHHHHHHTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCC
Confidence 468899999999999999877653
No 223
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=26.80 E-value=5.9 Score=22.41 Aligned_cols=16 Identities=0% Similarity=-0.302 Sum_probs=13.9
Q ss_pred hhhhhcCCCCCcccee
Q psy12003 3 LLRDKNPPRGTERQIK 18 (61)
Q Consensus 3 ~~eLA~~l~Lte~~Vq 18 (61)
..|||..+|+++..|.
T Consensus 20 ~~~la~~lg~s~~tv~ 35 (162)
T 3i4p_A 20 VADLAKKVGLSTTPCW 35 (162)
T ss_dssp HHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHCcCHHHHH
Confidence 5789999999999884
No 224
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=26.09 E-value=4.5 Score=21.92 Aligned_cols=21 Identities=10% Similarity=0.147 Sum_probs=16.4
Q ss_pred chhhhhcCCCCCccceeeccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQ 22 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFq 22 (61)
.|.+||..+|++++.+.--|+
T Consensus 29 sl~~lA~~~~~S~~~l~r~fk 49 (129)
T 1bl0_A 29 SLEKVSERSGYSKWHLQRMFK 49 (129)
T ss_dssp CCHHHHHHSSSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 467899999999987775554
No 225
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=25.87 E-value=14 Score=21.60 Aligned_cols=11 Identities=36% Similarity=0.842 Sum_probs=8.8
Q ss_pred cceeeccccch
Q psy12003 15 RQIKIWFQNRR 25 (61)
Q Consensus 15 ~~VqvWFqNrR 25 (61)
-.|..||=||+
T Consensus 77 ~~ip~w~lNr~ 87 (152)
T 3iz6_M 77 FKVPDWFLNRK 87 (152)
T ss_dssp CCCCCCSCSCC
T ss_pred cCcchhhhhhh
Confidence 35778999996
No 226
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=25.77 E-value=15 Score=20.38 Aligned_cols=23 Identities=4% Similarity=0.122 Sum_probs=20.3
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
|.+||.+.|++...+=-.|.|+-
T Consensus 37 ~~~Ia~~agvs~~t~Y~yF~sKe 59 (203)
T 3ccy_A 37 IGDIARACECSKSRLYHYFDSKE 59 (203)
T ss_dssp HHHHHHHTTCCGGGGTTTCSCHH
T ss_pred HHHHHHHhCCCcCeeeeeeCCHH
Confidence 67899999999999999999873
No 227
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=25.44 E-value=7.2 Score=21.81 Aligned_cols=23 Identities=4% Similarity=-0.032 Sum_probs=19.7
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
|.+||.+.|++...|--.|.|+-
T Consensus 35 ~~~IA~~agvs~~tlY~~F~sK~ 57 (196)
T 2qwt_A 35 MDEIARRAGVGAGTVYRHFPTKQ 57 (196)
T ss_dssp HHHHHHHTTSCHHHHHHHCSSHH
T ss_pred HHHHHHHhCCCHHHHHHHCCCHH
Confidence 67889999999999998898873
No 228
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=25.21 E-value=6.6 Score=20.07 Aligned_cols=23 Identities=4% Similarity=-0.091 Sum_probs=18.4
Q ss_pred hhhhhcCCCCCccc----eeeccccch
Q psy12003 3 LLRDKNPPRGTERQ----IKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~----VqvWFqNrR 25 (61)
..+||..+|++... |.-|-.+++
T Consensus 17 q~~lA~~~gis~~~~~~~is~~E~g~~ 43 (98)
T 3lfp_A 17 QEKLGVLAGIDEASASARMNQYEKGKH 43 (98)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCcchhhhHHHHHHCCCC
Confidence 46889999999988 888876654
No 229
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=25.11 E-value=5.4 Score=21.24 Aligned_cols=23 Identities=4% Similarity=-0.073 Sum_probs=17.2
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..+||..+|++...|--|-.+++
T Consensus 30 q~eLA~~lGis~~~is~ie~G~~ 52 (104)
T 3trb_A 30 ANQLAKHLAIPTNRVTAILNGAR 52 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45788888888888877776664
No 230
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=24.93 E-value=8.6 Score=21.32 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=20.3
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
|.+||.+.|++...+=-.|.|+-.
T Consensus 48 ~~~Ia~~agvs~~t~Y~~F~sK~~ 71 (212)
T 3nxc_A 48 TAKLAASVGVSEAALYRHFPSKTR 71 (212)
T ss_dssp HHHHHHHTTSCHHHHHTTCSSHHH
T ss_pred HHHHHHHhCCChhHHHHHCCCHHH
Confidence 678899999999999999998743
No 231
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=24.83 E-value=4.7 Score=21.60 Aligned_cols=23 Identities=4% Similarity=-0.257 Sum_probs=19.4
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..+||..+|++...|.-|-.+++
T Consensus 28 q~~lA~~~gis~~~is~~E~g~~ 50 (126)
T 3ivp_A 28 REQVGAMIEIDPRYLTNIENKGQ 50 (126)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 46889999999999998887764
No 232
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=24.16 E-value=11 Score=20.82 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=17.4
Q ss_pred chhhhhcCCCCCccceeeccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQ 22 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFq 22 (61)
+|.+|+..+++++.+|+-+|+
T Consensus 12 ~l~~l~~~~~~~~~~i~~~~~ 32 (190)
T 1fpw_A 12 DLTCLKQSTYFDRREIQQWHK 32 (190)
T ss_dssp HHHHHTTTCCSTHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHH
Confidence 577888889999999988775
No 233
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=23.77 E-value=12 Score=20.97 Aligned_cols=24 Identities=8% Similarity=-0.069 Sum_probs=20.6
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
|.+||.+.|++...+--.|.|+-.
T Consensus 35 i~~Ia~~Agvs~~t~Y~~F~sK~~ 58 (220)
T 3lsj_A 35 LREVTRAAGIVPAGFYRHFSDMDQ 58 (220)
T ss_dssp HHHHHHHHTSCGGGGTTTCSSHHH
T ss_pred HHHHHHHhCCChhHHHHHcCCHHH
Confidence 678899999999999999998743
No 234
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=23.77 E-value=15 Score=17.99 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=16.7
Q ss_pred hhcCCCCCccceeeccccchhH
Q psy12003 6 DKNPPRGTERQIKIWFQNRRMK 27 (61)
Q Consensus 6 LA~~l~Lte~~VqvWFqNrRak 27 (61)
.+.+.|++..+++..|..+|-.
T Consensus 31 y~~~~gi~~~~~rf~fdG~~l~ 52 (72)
T 1wm3_A 31 YCERQGLSMRQIRFRFDGQPIN 52 (72)
T ss_dssp HHHHHTCCTTTCEEEETTEECC
T ss_pred HHHHhCCCcceEEEEECCEEcC
Confidence 4666788888999999877653
No 235
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=23.70 E-value=7.9 Score=21.34 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=20.2
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
|.++|.+.|++...|--.|.|+-
T Consensus 30 ~~~IA~~agvs~~tlY~~F~sK~ 52 (192)
T 2zcm_A 30 LDDISKSVNIKKASLYYHYDNKE 52 (192)
T ss_dssp HHHHHHHTTCCHHHHHHHTCCHH
T ss_pred HHHHHHHhCCChHHHHHHCCCHH
Confidence 67899999999999999999874
No 236
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=23.62 E-value=11 Score=23.55 Aligned_cols=17 Identities=6% Similarity=-0.205 Sum_probs=13.4
Q ss_pred chhhhhcCCCCCcccee
Q psy12003 2 NLLRDKNPPRGTERQIK 18 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~Vq 18 (61)
...|||..||+|+.+|+
T Consensus 23 ~~~ela~~l~vS~~tIr 39 (315)
T 2w48_A 23 TQAQIARELGIYRTTIS 39 (315)
T ss_dssp CHHHHHHHTTCCHHHHH
T ss_pred CHHHHHHHHCcCHHHHH
Confidence 35788999999888774
No 237
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=23.38 E-value=6.3 Score=23.21 Aligned_cols=22 Identities=5% Similarity=-0.084 Sum_probs=15.4
Q ss_pred hhhhcCCCCCccceeeccccch
Q psy12003 4 LRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 4 ~eLA~~l~Lte~~VqvWFqNrR 25 (61)
.+||..+|++...|.-|..+++
T Consensus 34 ~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 34 ESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp HHHHHHHTSCHHHHHHHTTTTS
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 5677777777777777776643
No 238
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=23.37 E-value=8.3 Score=21.18 Aligned_cols=24 Identities=0% Similarity=0.045 Sum_probs=20.5
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
|.+||.+.|++...+--.|.|+-.
T Consensus 37 i~~Ia~~agvs~~t~Y~~F~sK~~ 60 (203)
T 3f1b_A 37 MDAIAAKAEISKPMLYLYYGSKDE 60 (203)
T ss_dssp HHHHHHHTTSCHHHHHHHCCSHHH
T ss_pred HHHHHHHhCCchHHHHHHhCCHHH
Confidence 678999999999999999988743
No 239
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=23.36 E-value=17 Score=20.14 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=17.7
Q ss_pred hhcCCCCCccceeeccccchhH
Q psy12003 6 DKNPPRGTERQIKIWFQNRRMK 27 (61)
Q Consensus 6 LA~~l~Lte~~VqvWFqNrRak 27 (61)
.|.+.|++..+++.+|..+|-.
T Consensus 70 Y~er~Gl~~~~irFlFDG~rI~ 91 (115)
T 3kyd_D 70 YCQRQGVPMNSLRFLFEGQRIA 91 (115)
T ss_dssp HHHHHTCCTTSEEEEETTEECC
T ss_pred HHHHhCCChhhEEEEECCeECC
Confidence 4667789999999999977653
No 240
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=23.23 E-value=7.6 Score=21.49 Aligned_cols=16 Identities=6% Similarity=-0.137 Sum_probs=13.4
Q ss_pred hhhhhcCCCCCcccee
Q psy12003 3 LLRDKNPPRGTERQIK 18 (61)
Q Consensus 3 ~~eLA~~l~Lte~~Vq 18 (61)
..|||..+|+++..|.
T Consensus 25 ~~ela~~lg~s~~tv~ 40 (152)
T 2cg4_A 25 YAELAKQFGVSPETIH 40 (152)
T ss_dssp HHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHCcCHHHHH
Confidence 5789999999988874
No 241
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=23.15 E-value=6.9 Score=22.68 Aligned_cols=16 Identities=6% Similarity=-0.199 Sum_probs=13.9
Q ss_pred hhhhhcCCCCCcccee
Q psy12003 3 LLRDKNPPRGTERQIK 18 (61)
Q Consensus 3 ~~eLA~~l~Lte~~Vq 18 (61)
+.|||..++++.++|+
T Consensus 39 ~~eLa~~l~vS~~Ti~ 54 (187)
T 1j5y_A 39 GAQLAEELSVSRQVIV 54 (187)
T ss_dssp HHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHCcCHHHHH
Confidence 5789999999999885
No 242
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=23.06 E-value=5.7 Score=21.65 Aligned_cols=23 Identities=4% Similarity=0.193 Sum_probs=19.8
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
|.+||.+.|++...+--.|.|+-
T Consensus 31 ~~~Ia~~agvs~~t~Y~~F~sK~ 53 (195)
T 3pas_A 31 VGKIAKAAGLSPATLYIYYEDKE 53 (195)
T ss_dssp HHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHhCCCchHHHHHcCCHH
Confidence 67889999999999999999873
No 243
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=22.92 E-value=9.9 Score=21.28 Aligned_cols=25 Identities=12% Similarity=0.096 Sum_probs=21.1
Q ss_pred hhhhhcCCCCCccceeeccccchhH
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRMK 27 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRak 27 (61)
|.+||.+.|++...|=-.|.|+-.=
T Consensus 32 ~~~IA~~aGvsk~tlY~~F~sKe~L 56 (203)
T 3cdl_A 32 MDRIAARAEVSKRTVYNHFPSKEEL 56 (203)
T ss_dssp HHHHHHHTTSCHHHHHTTSSSHHHH
T ss_pred HHHHHHHhCCCHHHHHHHCCCHHHH
Confidence 6789999999999999999987543
No 244
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=22.71 E-value=27 Score=18.19 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=18.5
Q ss_pred hhhcCCCCCccceeeccccchhH
Q psy12003 5 RDKNPPRGTERQIKIWFQNRRMK 27 (61)
Q Consensus 5 eLA~~l~Lte~~VqvWFqNrRak 27 (61)
..+.+.|++..+++..|..+|-.
T Consensus 34 ~y~~~~gi~~~~~rf~FdG~~l~ 56 (91)
T 2io0_B 34 AYCERQGLSMRQIRFRFDGQPIN 56 (91)
T ss_dssp HHHHHTTCCSTTEEEEETTEECC
T ss_pred HHHHHhCCCcccEEEEECCEEcC
Confidence 34677889999999999988764
No 245
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=22.46 E-value=14 Score=21.06 Aligned_cols=23 Identities=4% Similarity=-0.034 Sum_probs=15.7
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
|.+||.+.|++...|--.|.|+.
T Consensus 58 ~~~IA~~AGvs~~tlY~~F~sKe 80 (237)
T 3kkd_A 58 HRAVAAEAQVPLSATTYYFKDID 80 (237)
T ss_dssp HHHHHHHHTSCTTTC-----CHH
T ss_pred HHHHHHHhCCChhHHHHHcCCHH
Confidence 67899999999999999999873
No 246
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=22.26 E-value=8.9 Score=21.22 Aligned_cols=23 Identities=17% Similarity=0.042 Sum_probs=19.7
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
|.+||.+.|++...|--.|.|+-
T Consensus 37 ~~~IA~~agvs~~tlY~~F~sK~ 59 (194)
T 2q24_A 37 LERIAREAGVGSGTLYRNFPTRE 59 (194)
T ss_dssp HHHHHHHTTCCHHHHHHHCCSHH
T ss_pred HHHHHHHhCCChHHHHHHcCCHH
Confidence 67889999999999998898873
No 247
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=22.23 E-value=9 Score=20.64 Aligned_cols=16 Identities=6% Similarity=-0.166 Sum_probs=13.3
Q ss_pred hhhhcCCCCCccceee
Q psy12003 4 LRDKNPPRGTERQIKI 19 (61)
Q Consensus 4 ~eLA~~l~Lte~~Vqv 19 (61)
.+||+.||+++..|..
T Consensus 33 k~LAr~Lg~s~~~I~~ 48 (111)
T 2yqf_A 33 AELARELQFSVEDINR 48 (111)
T ss_dssp HHHHHHTTCCHHHHHH
T ss_pred HHHHHHcCCCHHHHHH
Confidence 5789999999987764
No 248
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=22.17 E-value=8.8 Score=20.95 Aligned_cols=22 Identities=5% Similarity=0.036 Sum_probs=19.3
Q ss_pred hhhhhcCCCCCccceeeccccc
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNR 24 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNr 24 (61)
|.+||.+.|++...+---|.|+
T Consensus 25 i~~Ia~~agvs~~t~Y~~F~sK 46 (194)
T 3bqz_B 25 TGEIVKLSESSKGNLYYHFKTK 46 (194)
T ss_dssp HHHHHHHTTCCHHHHHHHTSSH
T ss_pred HHHHHHHhCCCchhHHHhCCCH
Confidence 6788999999999998888887
No 249
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=22.14 E-value=19 Score=21.88 Aligned_cols=24 Identities=8% Similarity=-0.108 Sum_probs=0.0
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
..+||..+|++...|.-|-.+++.
T Consensus 46 ~~~la~~~g~s~~~is~~e~g~~~ 69 (311)
T 4ich_A 46 QREFAAAIGLDESKLSKSLNGTRR 69 (311)
T ss_dssp ------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 468999999999999999887654
No 250
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=21.81 E-value=7.8 Score=21.12 Aligned_cols=23 Identities=4% Similarity=-0.140 Sum_probs=19.9
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
+.+||.+.|++...+--.|.|+-
T Consensus 31 ~~~Ia~~agvs~~t~Y~~F~sK~ 53 (183)
T 1zk8_A 31 LASLAQTLGVRSPSLYNHVKGLQ 53 (183)
T ss_dssp HHHHHHHHTSCHHHHTTTCSSHH
T ss_pred HHHHHHHcCCCchHHHHHcCCHH
Confidence 67889999999999999999874
No 251
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=21.77 E-value=7.3 Score=21.21 Aligned_cols=23 Identities=9% Similarity=0.242 Sum_probs=19.4
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
|.+||.+.|++...+--.|.|+-
T Consensus 33 i~~Ia~~agvs~~t~Y~~F~sK~ 55 (196)
T 3col_A 33 TTKVAKRVGIAQSNVYLYFKNKQ 55 (196)
T ss_dssp HHHHHHHHTSCHHHHHTTCSSHH
T ss_pred HHHHHHHhCCcHHHHHHHhCCHH
Confidence 67888999999999988888874
No 252
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=21.74 E-value=5 Score=21.79 Aligned_cols=21 Identities=10% Similarity=0.012 Sum_probs=16.6
Q ss_pred chhhhhcCCCCCccceeeccc
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQ 22 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFq 22 (61)
.|.+||..+|+++..+.-.|+
T Consensus 95 sl~~lA~~~g~S~~~f~r~Fk 115 (133)
T 1u8b_A 95 TLEALADQVAMSPFHLHRLFK 115 (133)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 478899999999887766664
No 253
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=21.70 E-value=12 Score=20.35 Aligned_cols=10 Identities=50% Similarity=1.096 Sum_probs=7.0
Q ss_pred eeeccccchh
Q psy12003 17 IKIWFQNRRM 26 (61)
Q Consensus 17 VqvWFqNrRa 26 (61)
|=+||.||-+
T Consensus 19 iwlwfrnrpa 28 (117)
T 1w8x_P 19 IWLWFRNRPA 28 (117)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHccChH
Confidence 3469998855
No 254
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=21.69 E-value=11 Score=21.00 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=13.4
Q ss_pred hhhhcCCCCCccceee
Q psy12003 4 LRDKNPPRGTERQIKI 19 (61)
Q Consensus 4 ~eLA~~l~Lte~~Vqv 19 (61)
.+||+.||+++..|..
T Consensus 21 k~LAR~LGlse~dId~ 36 (122)
T 3ezq_B 21 RRLARQLKVSDTKIDS 36 (122)
T ss_dssp HHHHHHTTCCHHHHHH
T ss_pred HHHHHHhCCCHHHHHH
Confidence 5789999999988774
No 255
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=21.65 E-value=16 Score=20.23 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=20.5
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
|.+||.+.|++...+=-.|.|+-.
T Consensus 36 v~~Ia~~agvs~~t~Y~~F~sK~~ 59 (195)
T 2iu5_A 36 VSDIMQTAKIRRQTFYNYFQNQEE 59 (195)
T ss_dssp HHHHHHHHTSCGGGGGGTCSSHHH
T ss_pred HHHHHHHhCCCHHHHHHHcCCHHH
Confidence 678899999999999999998744
No 256
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=21.51 E-value=9.6 Score=20.86 Aligned_cols=16 Identities=6% Similarity=-0.195 Sum_probs=13.3
Q ss_pred hhhhcCCCCCccceee
Q psy12003 4 LRDKNPPRGTERQIKI 19 (61)
Q Consensus 4 ~eLA~~l~Lte~~Vqv 19 (61)
.+||+.||+++..|..
T Consensus 28 k~LAr~Lg~s~~~I~~ 43 (118)
T 2of5_H 28 PAVALHLGVSYREVQR 43 (118)
T ss_dssp HHHHHHTTCCHHHHHH
T ss_pred HHHHHHcCCCHHHHHH
Confidence 4789999999998863
No 257
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=21.50 E-value=10 Score=18.11 Aligned_cols=22 Identities=9% Similarity=0.216 Sum_probs=16.2
Q ss_pred hhhhhcCC--CCCccceeeccccc
Q psy12003 3 LLRDKNPP--RGTERQIKIWFQNR 24 (61)
Q Consensus 3 ~~eLA~~l--~Lte~~VqvWFqNr 24 (61)
|.|.|..+ ..++.+|.-|-++.
T Consensus 5 l~EwA~~~~~~~s~~Tl~r~ar~G 28 (52)
T 2og0_A 5 LQEWNARQRRPRSLETVRRWVRES 28 (52)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHCC
Confidence 66888888 67888888775543
No 258
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=21.46 E-value=9.2 Score=18.99 Aligned_cols=16 Identities=13% Similarity=-0.066 Sum_probs=13.2
Q ss_pred hhhhhcCCCCCcccee
Q psy12003 3 LLRDKNPPRGTERQIK 18 (61)
Q Consensus 3 ~~eLA~~l~Lte~~Vq 18 (61)
+.|||..+|++...|.
T Consensus 17 ~~eLa~~lgvs~~tv~ 32 (81)
T 2htj_A 17 TAEIAEALAVTDYQAR 32 (81)
T ss_dssp HHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHCcCHHHHH
Confidence 5788999999988874
No 259
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=21.42 E-value=10 Score=20.60 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=19.7
Q ss_pred hhhhhcCCCCCccceeecccc-c
Q psy12003 3 LLRDKNPPRGTERQIKIWFQN-R 24 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqN-r 24 (61)
|.+||.+.|++...+--.|.| +
T Consensus 29 ~~~Ia~~agvs~~t~Y~~F~~sK 51 (191)
T 1sgm_A 29 LNQIVKESGAPKGSLYHFFPNGK 51 (191)
T ss_dssp HHHHHHHHCCCSCHHHHSTTTCH
T ss_pred HHHHHHHHCCCchhHHHHccccH
Confidence 678999999999999999997 6
No 260
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=21.39 E-value=5.9 Score=24.30 Aligned_cols=23 Identities=17% Similarity=-0.005 Sum_probs=17.8
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
..|+|..|++++.+|+.-..|=+
T Consensus 215 ~~eIA~~l~is~~TV~~~~~~~~ 237 (265)
T 3qp6_A 215 NWEIATILNISERTVKFHVANVI 237 (265)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHH
Confidence 46899999999999986554433
No 261
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=21.29 E-value=8.3 Score=21.56 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=20.1
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
|.+||.+.|++...|--.|.|+-.
T Consensus 34 ~~~IA~~agvs~~t~Y~~F~sK~~ 57 (212)
T 2ras_A 34 LSELAARAGISQANLSRYFETRED 57 (212)
T ss_dssp HHHHHHHHTSCHHHHTTTCSSHHH
T ss_pred HHHHHHHhCCCHHHHHHHcCCHHH
Confidence 678899999999999999988743
No 262
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=21.27 E-value=14 Score=20.48 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=20.5
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
|.+||.+.|++...|--.|.++..
T Consensus 33 i~~Ia~~agvs~~t~Y~~F~sK~~ 56 (216)
T 3s5r_A 33 MAEIAASVGVNPAMIHYYFKTRDS 56 (216)
T ss_dssp HHHHHHTTTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHCCCHHHHHHHcCCHHH
Confidence 678999999999999999988743
No 263
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=21.13 E-value=16 Score=21.49 Aligned_cols=24 Identities=4% Similarity=-0.152 Sum_probs=20.5
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
|.+||.++|++...+--.|.|+-.
T Consensus 39 ~~~IA~~aGvs~~tlY~hF~~K~~ 62 (237)
T 2hxo_A 39 FRALAERLATGPGAIYWHITGKAE 62 (237)
T ss_dssp HHHHHHHHTSCGGGGGGTCCCHHH
T ss_pred HHHHHHHHCCChHHHHHhcCCHHH
Confidence 678999999999999999998744
No 264
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=21.11 E-value=20 Score=19.93 Aligned_cols=22 Identities=5% Similarity=-0.114 Sum_probs=0.0
Q ss_pred hhhhhcCCCCCccceeeccccc
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNR 24 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNr 24 (61)
..+||..+|++...|.-|-.+.
T Consensus 17 q~elA~~lgis~~~vs~~e~G~ 38 (158)
T 2p5t_A 17 QLEFARIVGISRNSLSRYENGT 38 (158)
T ss_dssp ----------------------
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4678999999998888884443
No 265
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.08 E-value=8.9 Score=21.21 Aligned_cols=16 Identities=19% Similarity=0.003 Sum_probs=13.6
Q ss_pred hhhhhcCCCCCcccee
Q psy12003 3 LLRDKNPPRGTERQIK 18 (61)
Q Consensus 3 ~~eLA~~l~Lte~~Vq 18 (61)
..|||..+|+++..|.
T Consensus 24 ~~ela~~lg~s~~tv~ 39 (151)
T 2cyy_A 24 LREISKITGLAESTIH 39 (151)
T ss_dssp HHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHCcCHHHHH
Confidence 5789999999998883
No 266
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=20.92 E-value=10 Score=20.87 Aligned_cols=16 Identities=0% Similarity=-0.105 Sum_probs=13.4
Q ss_pred hhhhhcCCCCCcccee
Q psy12003 3 LLRDKNPPRGTERQIK 18 (61)
Q Consensus 3 ~~eLA~~l~Lte~~Vq 18 (61)
..|||..+|+++..|.
T Consensus 22 ~~ela~~lg~s~~tv~ 37 (144)
T 2cfx_A 22 MRELGRKIKLSPPSVT 37 (144)
T ss_dssp HHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHCcCHHHHH
Confidence 5789999999988874
No 267
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=20.89 E-value=8.3 Score=21.07 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=20.6
Q ss_pred hhhhhcCCCCCccceeeccccchh
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRM 26 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRa 26 (61)
|.+||.+.|++...+--.|.|+-.
T Consensus 33 ~~~IA~~agvs~~tlY~~F~sK~~ 56 (197)
T 3rd3_A 33 LNEILQSAGVPKGSFYHYFKSKEQ 56 (197)
T ss_dssp HHHHHHHHTCCHHHHTTTCSCHHH
T ss_pred HHHHHHHhCCChhhHHHHcCCHHH
Confidence 678899999999999999998844
No 268
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=20.78 E-value=21 Score=20.61 Aligned_cols=28 Identities=4% Similarity=-0.220 Sum_probs=0.0
Q ss_pred hhhhhcCCCCCccceeeccccchhHHHH
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRRMKWKK 30 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrRak~kr 30 (61)
+.++|..||++..+|.-|..+.+..++.
T Consensus 161 ~~~Ia~~l~vs~~T~yr~l~~~~~~~~~ 188 (193)
T 3plo_X 161 RKQVALIYDVALSTLYKKHPAKRAHIEN 188 (193)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHCcCHHHHHHHHhhhHHhhhh
Confidence 4678888888888888777766655443
No 269
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=20.69 E-value=20 Score=18.02 Aligned_cols=22 Identities=5% Similarity=0.241 Sum_probs=16.9
Q ss_pred hhcCCCCCccceeeccccchhH
Q psy12003 6 DKNPPRGTERQIKIWFQNRRMK 27 (61)
Q Consensus 6 LA~~l~Lte~~VqvWFqNrRak 27 (61)
.+.+.|++..+++..|..+|-.
T Consensus 38 y~~~~gi~~~~~rf~fdG~~l~ 59 (79)
T 3a4r_A 38 YEEAMGLSGHKLSFFFDGTKLS 59 (79)
T ss_dssp HHHHHTCTTCCCEEEETTEECC
T ss_pred HHHHhCCCcccEEEEECCEEcC
Confidence 4666788888999999877653
No 270
>1ttw_A Secretion chaperone; chaperone, type III secretion; 2.38A {Yersinia pestis} SCOP: d.198.1.1
Probab=20.67 E-value=42 Score=19.27 Aligned_cols=12 Identities=17% Similarity=-0.205 Sum_probs=10.2
Q ss_pred hhhhhcCCCCCc
Q psy12003 3 LLRDKNPPRGTE 14 (61)
Q Consensus 3 ~~eLA~~l~Lte 14 (61)
|.+|+..++|+|
T Consensus 8 i~~l~q~l~L~~ 19 (138)
T 1ttw_A 8 LEEFATELGLEE 19 (138)
T ss_dssp HHHHTTTTTCSC
T ss_pred HHHHHHHhCccc
Confidence 788999999993
No 271
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=20.40 E-value=10 Score=20.98 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=19.9
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
|.+||.+.|++...+--.|.|+.
T Consensus 41 ~~~Ia~~agvs~~t~Y~~F~sK~ 63 (212)
T 1pb6_A 41 LEQIAELAGVSKTNLLYYFPSKE 63 (212)
T ss_dssp HHHHHHHTTSCHHHHHHHSSSHH
T ss_pred HHHHHHHHCCChhHHHHhCCCHH
Confidence 67889999999999999998874
No 272
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=20.39 E-value=7.1 Score=21.62 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=19.6
Q ss_pred hhhhhcCCCCCccceeeccccc
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNR 24 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNr 24 (61)
|.++|.+.|++...|--.|.|+
T Consensus 41 ~~~IA~~aGvs~~tlY~~F~sK 62 (212)
T 3loc_A 41 LEQIAELAGVSKTNLLYYFPSK 62 (212)
T ss_dssp HHHHHHHHTSCHHHHHHHSSSH
T ss_pred HHHHHHHHCcCHHHHhhhCCCH
Confidence 6788999999999999999987
No 273
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=20.38 E-value=12 Score=21.49 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=19.7
Q ss_pred hhhhhcCCCCCccceeeccccch
Q psy12003 3 LLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 3 ~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
|.+||.++|++...+--.|.|+-
T Consensus 39 ~~~IA~~agvs~~t~Y~~F~~K~ 61 (216)
T 2oi8_A 39 LNAIAKRMGMSGPALYRYFDGRD 61 (216)
T ss_dssp HHHHHHHTTCCHHHHHTTCSSHH
T ss_pred HHHHHHHhCCCHHHHHHHcCCHH
Confidence 67889999999999988898873
No 274
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=20.34 E-value=7.9 Score=22.11 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=18.9
Q ss_pred chhhhhcCCCCCccceeeccccch
Q psy12003 2 NLLRDKNPPRGTERQIKIWFQNRR 25 (61)
Q Consensus 2 ~~~eLA~~l~Lte~~VqvWFqNrR 25 (61)
-+.+||..+|++...|.-|-.+++
T Consensus 25 s~~~la~~~gis~~~ls~~e~g~~ 48 (198)
T 2bnm_A 25 DHAALASLLGETPETVAAWENGEG 48 (198)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTTC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 356788888888888888877766
Done!