RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12003
         (61 letters)



>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain. 
          Length = 57

 Score = 45.2 bits (108), Expect = 1e-08
 Identities = 14/18 (77%), Positives = 17/18 (94%)

Query: 13 TERQIKIWFQNRRMKWKK 30
          TERQ+K+WFQNRR KWK+
Sbjct: 40 TERQVKVWFQNRRAKWKR 57


>gnl|CDD|238039 cd00086, homeodomain, Homeodomain;  DNA binding domains involved
          in the transcriptional regulation of key eukaryotic
          developmental processes; may bind to DNA as monomers or
          as homo- and/or heterodimers, in a sequence-specific
          manner.
          Length = 59

 Score = 41.8 bits (99), Expect = 3e-07
 Identities = 14/20 (70%), Positives = 16/20 (80%)

Query: 13 TERQIKIWFQNRRMKWKKEH 32
          TERQ+KIWFQNRR K K+  
Sbjct: 40 TERQVKIWFQNRRAKLKRSE 59


>gnl|CDD|197696 smart00389, HOX, Homeodomain.  DNA-binding factors that are
          involved in the transcriptional regulation of key
          developmental processes.
          Length = 57

 Score = 40.7 bits (96), Expect = 9e-07
 Identities = 13/17 (76%), Positives = 16/17 (94%)

Query: 13 TERQIKIWFQNRRMKWK 29
          +ERQ+K+WFQNRR KWK
Sbjct: 41 SERQVKVWFQNRRAKWK 57


>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
           [Transcription].
          Length = 156

 Score = 31.3 bits (71), Expect = 0.012
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 13  TERQIKIWFQNRRMKWKKE 31
             + ++IWFQN+R K KK+
Sbjct: 91  PPKSVQIWFQNKRAKEKKK 109


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.134    0.445 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,085,220
Number of extensions: 198742
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 4
Length of query: 61
Length of database: 10,937,602
Length adjustment: 32
Effective length of query: 29
Effective length of database: 9,518,274
Effective search space: 276029946
Effective search space used: 276029946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.1 bits)