RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12003
(61 letters)
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 54.8 bits (132), Expect = 2e-12
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 13 TERQIKIWFQNRRMKWKKEHK 33
++ Q+K W+QNRRMKWKK
Sbjct: 57 SQLQVKTWYQNRRMKWKKSGP 77
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 54.0 bits (130), Expect = 4e-12
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 13 TERQIKIWFQNRRMKWKKEHK 33
+ERQ+K WFQNRR KW++
Sbjct: 47 SERQVKTWFQNRRAKWRRSGP 67
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA;
NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A
1hom_A 1ftz_A
Length = 68
Score = 52.8 bits (127), Expect = 1e-11
Identities = 20/21 (95%), Positives = 21/21 (100%)
Query: 13 TERQIKIWFQNRRMKWKKEHK 33
TERQIKIWFQNRRMKWKKE+K
Sbjct: 42 TERQIKIWFQNRRMKWKKENK 62
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double
helix, helix-turn-helix; NMR {Drosophila melanogaster}
SCOP: a.4.1.1
Length = 68
Score = 52.0 bits (125), Expect = 2e-11
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 13 TERQIKIWFQNRRMKWKKEHK 33
Q+KIWF+NRR + K +
Sbjct: 42 GTAQVKIWFKNRRRRHKIQSD 62
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA
binding, homeodomain, homeotic proteins, development,
specificity; HET: DNA; 2.40A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 9ant_A*
Length = 81
Score = 52.1 bits (125), Expect = 3e-11
Identities = 18/21 (85%), Positives = 19/21 (90%)
Query: 13 TERQIKIWFQNRRMKWKKEHK 33
TERQIKIWFQNRRMK KKE +
Sbjct: 60 TERQIKIWFQNRRMKLKKEIQ 80
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain;
protein-DNA complex, transcription/DNA complex; 2.42A
{Mesocricetus auratus}
Length = 63
Score = 51.6 bits (124), Expect = 3e-11
Identities = 18/20 (90%), Positives = 18/20 (90%)
Query: 13 TERQIKIWFQNRRMKWKKEH 32
TER IKIWFQNRRMKWKKE
Sbjct: 43 TERHIKIWFQNRRMKWKKEE 62
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 69
Score = 51.6 bits (124), Expect = 3e-11
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASM 37
TE Q+KIWFQNRR K K++ + +
Sbjct: 44 TETQVKIWFQNRRYKTKRKQLSSEL 68
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 51.2 bits (123), Expect = 4e-11
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 13 TERQIKIWFQNRRMKWKKEHK 33
T+ Q+KIWFQN+R K KK
Sbjct: 47 TQTQVKIWFQNKRSKIKKSGP 67
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex,
DNA-binding protein, protein/DNA complex; HET: DNA;
2.35A {Homo sapiens} SCOP: a.4.1.1
Length = 97
Score = 51.8 bits (124), Expect = 5e-11
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 13 TERQIKIWFQNRRMKWKKEHK 33
E Q+KIWFQNRRMK KK +
Sbjct: 74 NETQVKIWFQNRRMKQKKRER 94
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 51.0 bits (122), Expect = 6e-11
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 13 TERQIKIWFQNRRMKWKKEHK 33
+ERQI IWFQNRR+K KK
Sbjct: 47 SERQITIWFQNRRVKEKKSGP 67
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A
{Drosophila melanogaster} PDB: 2r5z_A*
Length = 88
Score = 51.0 bits (122), Expect = 8e-11
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 13 TERQIKIWFQNRRMKWKKEHK 33
TERQIKIWFQNRRMKWKKEHK
Sbjct: 68 TERQIKIWFQNRRMKWKKEHK 88
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA
complex, transcription/DNA complex; 2.00A {Drosophila
melanogaster} SCOP: a.4.1.1
Length = 60
Score = 50.0 bits (120), Expect = 1e-10
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 13 TERQIKIWFQNRRMKWKKE 31
E IK+WFQNRRMK K++
Sbjct: 41 PESTIKVWFQNRRMKDKRQ 59
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA
complex, HOX hexapeptide, TALE homeodomain, homeodomain
interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB:
1san_A
Length = 77
Score = 50.2 bits (120), Expect = 1e-10
Identities = 17/21 (80%), Positives = 19/21 (90%)
Query: 13 TERQIKIWFQNRRMKWKKEHK 33
TERQ+KIWFQNRRMK KK +K
Sbjct: 53 TERQVKIWFQNRRMKMKKINK 73
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA
binding protein/DNA), transcription/DNA complex; HET:
DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB:
1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A
1du0_A* 1ztr_A 1enh_A 2p81_A
Length = 61
Score = 49.6 bits (119), Expect = 1e-10
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 13 TERQIKIWFQNRRMKWKK 30
E QIKIWF+N+R K KK
Sbjct: 43 NEAQIKIWFKNKRAKIKK 60
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex,
DNA-binding, homeobox, NUC developmental protein; 2.70A
{Drosophila melanogaster}
Length = 93
Score = 50.2 bits (120), Expect = 2e-10
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 13 TERQIKIWFQNRRMKWKKEHK 33
T+ Q+K WFQNRR KW+++
Sbjct: 57 TDAQVKTWFQNRRTKWRRQTA 77
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental
protein, DNA-binding, N gene regulation; 1.54A {Homo
sapiens}
Length = 56
Score = 49.2 bits (118), Expect = 2e-10
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 13 TERQIKIWFQNRRMKWKKE 31
T+ Q+K WFQNRR KW+++
Sbjct: 37 TDAQVKTWFQNRRTKWRRQ 55
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA
complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Length = 58
Score = 49.2 bits (118), Expect = 3e-10
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 13 TERQIKIWFQNRRMKWKK 30
TE Q+KIWFQNRR K K+
Sbjct: 40 TETQVKIWFQNRRAKAKR 57
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens}
PDB: 2ld5_A*
Length = 73
Score = 49.5 bits (118), Expect = 3e-10
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 13 TERQIKIWFQNRRMKWKKEHK 33
+ERQ+ IWFQNRR+K KK
Sbjct: 47 SERQVTIWFQNRRVKEKKVIN 67
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics,
protein structure initiative, PSI, center for
eukaryotic structural genomics; NMR {Homo sapiens}
Length = 84
Score = 49.4 bits (118), Expect = 4e-10
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 13 TERQIKIWFQNRRMKWKKEHK 33
+ +Q+K WFQN+RMK K+ K
Sbjct: 62 SYKQVKTWFQNQRMKSKRWQK 82
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic
development, complex (homeodomain/DNA); HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P*
1vnd_A 1qry_A
Length = 77
Score = 48.6 bits (116), Expect = 5e-10
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVIP 41
T Q+KIWFQN R K K+ P
Sbjct: 49 TPTQVKIWFQNHRYKTKRAQNEKGYEGHP 77
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription,
transcription facto developmental protein,
transcription regulation, NUC homeobox; 2.6A {Mus
musculus}
Length = 62
Score = 47.7 bits (114), Expect = 9e-10
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 13 TERQIKIWFQNRRMKWKKE 31
+ +Q+K WFQN+RMK K+
Sbjct: 43 SYKQVKTWFQNQRMKCKRW 61
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1f43_A 1yrn_A*
Length = 61
Score = 47.2 bits (113), Expect = 1e-09
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 13 TERQIKIWFQNRRMKWK 29
T Q+++WF N+RM+ K
Sbjct: 45 TPLQVRVWFINKRMRSK 61
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding
protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Length = 68
Score = 46.6 bits (111), Expect = 3e-09
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASM 37
T Q+KIWFQN R K K++ K +
Sbjct: 42 TPTQVKIWFQNHRYKMKRQAKDKAA 66
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus,
transcription-DNA CO; 1.70A {Homo sapiens}
Length = 58
Score = 46.1 bits (110), Expect = 4e-09
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 13 TERQIKIWFQNRRMKWK 29
T Q+KIWFQNRR K K
Sbjct: 42 TSTQVKIWFQNRRYKSK 58
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 73
Score = 43.2 bits (102), Expect = 8e-08
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMAS 36
TE Q + WF+ R +W++ + S
Sbjct: 43 TEEQTQKWFKQRLAEWRRSEGLPS 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 44.2 bits (104), Expect = 1e-07
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASM 37
+ +++WF NRR K K+ A
Sbjct: 139 EKEVVRVWFCNRRQKEKRMTPAAGA 163
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 44.2 bits (104), Expect = 1e-07
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 13 TERQIKIWFQNRRMKWKK 30
+ I++WF NRR K K+
Sbjct: 141 EKEVIRVWFSNRRQKEKR 158
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 42.0 bits (99), Expect = 2e-07
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMAS 36
+ R+++ WF +RR + S
Sbjct: 48 STREVRKWFSDRRYHCRNLKGSRS 71
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 40.8 bits (96), Expect = 5e-07
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 13 TERQIKIWFQNRRMKWKKEHK 33
R I +WFQN R K +K
Sbjct: 47 PTRVIVVWFQNARQKARKSGP 67
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 80
Score = 40.5 bits (95), Expect = 9e-07
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMA 35
+R +++WFQN R + +K +
Sbjct: 57 KKRVVQVWFQNTRARERKSGPSS 79
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac
development, riken structural genomics/proteomics
initiative, RSGI, transcription; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 72
Score = 39.7 bits (93), Expect = 2e-06
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMAS 36
TE Q + WF+ R +W++ + S
Sbjct: 42 TEEQTQKWFKQRLAEWRRSEGLPS 65
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain
variant, DNA binding protein, developmental protein,
disease mutation, DNA-binding; NMR {Homo sapiens}
Length = 67
Score = 39.2 bits (92), Expect = 2e-06
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASM 37
+I+IWFQNRR K K+ H+ +
Sbjct: 41 ELDRIQIWFQNRRAKLKRSHRESQF 65
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein,
DNA-binding, N gene regulation; 1.00A {Drosophila
melanogaster} PDB: 3lnq_A 3cmy_A
Length = 60
Score = 38.4 bits (90), Expect = 5e-06
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 13 TERQIKIWFQNRRMKWKKEHKM 34
TE +I++WFQNRR KW+K+ K+
Sbjct: 39 TEARIQVWFQNRRAKWRKQEKV 60
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 38.1 bits (89), Expect = 6e-06
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 13 TERQIKIWFQNRRMKWKKEHK 33
++ IK WF+N K ++
Sbjct: 47 PQKVIKHWFRNTLFKERQSGP 67
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 39.2 bits (91), Expect = 9e-06
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 13 TERQIKIWFQNRRMKWKK 30
+ +++WF NRR + K+
Sbjct: 127 EKEVVRVWFCNRRQREKR 144
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription
regulation; HET: DNA; 2.00A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 3a01_B
Length = 81
Score = 37.7 bits (88), Expect = 1e-05
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMAS 36
TE +I++WFQNRR + +K+H S
Sbjct: 58 TEARIQVWFQNRRARLRKQHTSVS 81
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription
factor, structural genomics, loop insertion, NPPSFA;
NMR {Homo sapiens} SCOP: a.4.1.1
Length = 95
Score = 37.7 bits (87), Expect = 2e-05
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASM 37
T ++ WF NRR + K+ +A++
Sbjct: 62 TSLKVYNWFANRRKEIKRRANIAAI 86
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding
protein, homeodomain, LIM domain; NMR {Rattus
norvegicus} SCOP: a.4.1.1
Length = 66
Score = 36.9 bits (86), Expect = 2e-05
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 13 TERQIKIWFQNRRMKWKKEHKM 34
+ R I++WFQN+R K KK M
Sbjct: 43 SPRVIRVWFQNKRCKDKKRSIM 64
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 37.3 bits (86), Expect = 2e-05
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMAS 36
+ R+I WF RR +
Sbjct: 53 SRREIDSWFSERRKLRDSMEQAVL 76
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA
complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P
2lkx_A* 2l7m_P
Length = 68
Score = 36.5 bits (85), Expect = 2e-05
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMN 38
TE ++++WF+NRR KW+K + +
Sbjct: 43 TEARVRVWFKNRRAKWRKREEFIVTD 68
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 37.7 bits (87), Expect = 3e-05
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 13 TERQIKIWFQNRRMKWKK 30
+++WF NRR K
Sbjct: 133 DREVVRVWFSNRRQTLKN 150
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Mus musculus}
Length = 80
Score = 36.6 bits (85), Expect = 3e-05
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMAS 36
E ++++WF+NRR K +++ +
Sbjct: 47 PESRVQVWFKNRRAKCRQQQQQQQ 70
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain,
transcription factor, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 89
Score = 36.9 bits (85), Expect = 4e-05
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMN 38
T R+I WF ++ + + ++
Sbjct: 51 TRREIDAWFTEKKKSKALKEEKMEID 76
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 36.4 bits (84), Expect = 4e-05
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMAS 36
T R+I WF RR K E S
Sbjct: 47 TRREIDSWFSERRKKVNAEETKKS 70
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 36.3 bits (84), Expect = 4e-05
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 13 TERQIKIWFQNRRMKWKKEHKM 34
T+R +++WFQN R K+++
Sbjct: 47 TKRVLQVWFQNARAKFRRNLLR 68
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 80
Score = 36.2 bits (84), Expect = 4e-05
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVIP 41
E +I++WF NRR KW++E K+ +
Sbjct: 47 PEARIQVWFSNRRAKWRREEKLRNQRRQS 75
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 35.8 bits (83), Expect = 6e-05
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMA 35
E ++++WF+NRR KW++ +
Sbjct: 47 REEKVEVWFKNRRAKWRRSGPSS 69
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor,
homeodomain, domain swapping, structural oxford protein
production facility, OPPF; 2.70A {Homo sapiens}
Length = 66
Score = 34.8 bits (80), Expect = 1e-04
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 13 TERQIKIWFQNRRMKWKKEHK 33
+IK WF + R + ++
Sbjct: 44 ARSEIKKWFSDHRYRCQRGIV 64
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 71
Score = 34.8 bits (80), Expect = 1e-04
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 13 TERQIKIWFQNRRMKWKK 30
+ I +FQN+R K
Sbjct: 48 PKHTIIKFFQNQRYHVKH 65
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 35.9 bits (82), Expect = 2e-04
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 13 TERQIKIWFQNRRMKWKK 30
+ +++WF NRR K K+
Sbjct: 136 EKDVVRVWFSNRRQKGKR 153
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational
analysis, G protein, GAS subunit, A2A adenosine
receptor, cell-penetrating peptides; NMR {Synthetic}
PDB: 2o00_A
Length = 37
Score = 31.9 bits (72), Expect = 0.001
Identities = 16/16 (100%), Positives = 16/16 (100%)
Query: 15 RQIKIWFQNRRMKWKK 30
RQIKIWFQNRRMKWKK
Sbjct: 1 RQIKIWFQNRRMKWKK 16
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding
domain, transcription, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 72
Score = 32.5 bits (74), Expect = 0.001
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 13 TERQIKIWFQNRRMKWKKE 31
+ R+I+ WF++RR + K
Sbjct: 49 SVRKIQCWFRHRRNQDKPS 67
>1lfb_A Liver transcription factor (LFB1); transcription regulation;
2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Length = 99
Score = 31.7 bits (71), Expect = 0.004
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMAS 36
TE ++ WF NRR + HK+A
Sbjct: 70 TEVRVYNWFANRRKEEAFRHKLAM 93
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 64
Score = 29.8 bits (67), Expect = 0.011
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 13 TERQIKIWFQNRRMKWKK 30
R I+ WF+ RR + K
Sbjct: 41 DVRSIQRWFRQRRNQEKP 58
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 30.2 bits (67), Expect = 0.021
Identities = 3/21 (14%), Positives = 7/21 (33%)
Query: 13 TERQIKIWFQNRRMKWKKEHK 33
+ +F N R + +
Sbjct: 137 ELSTVSNFFMNARRRSLDKWL 157
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo,
protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 25.7 bits (55), Expect = 0.77
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 13 TERQIKIWFQNRRMKWK 29
TE ++ WF NRR +
Sbjct: 203 TEVRVYNWFANRRKEEA 219
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 25.5 bits (55), Expect = 0.82
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 13 TERQIKIWFQNRRMKWKK 30
I WF + R WK
Sbjct: 65 ARTDIVSWFGDTRYAWKN 82
>1lla_A Hemocyanin (subunit type II); oxygen transport; 2.18A {Limulus
polyphemus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB: 1nol_A
1ll1_A 1oxy_A
Length = 628
Score = 25.3 bits (55), Expect = 1.2
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 10 PRGTERQIKIWFQNRRMKWKKEHKM------ASMNVIPYHYHMSQPY 50
P E I + Q+ E+++ +N +H+H+ P
Sbjct: 136 PEFDESPILVDVQDTGNILDPEYRLAYYREDVGINAHHWHWHLVYPS 182
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation,
DNA-binding, POU domain, diabetes, disease mutation,
MODY3, transcription/DNA comple; 2.60A {Homo sapiens}
SCOP: a.4.1.1 a.35.1.1
Length = 194
Score = 25.2 bits (54), Expect = 1.2
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 13 TERQIKIWFQNRRMKWK 29
TE ++ WF NRR +
Sbjct: 176 TEVRVYNWFANRRKEEA 192
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.8 bits (53), Expect = 1.9
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 20 WFQNRRMKWKKEHKMASMNVIPYHYHMSQPYGNPYQFT 57
+ + K E + SM Y + Y + F
Sbjct: 93 FLMSP---IKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain,
transcription factor, leucine zipper- containing
factor, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.4.1.1
Length = 76
Score = 24.2 bits (52), Expect = 2.2
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 13 TERQIKIWFQNRRMKWKKEH 32
+I WF + R K
Sbjct: 43 PRPEIIQWFGDTRYALKHGQ 62
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain,
hoogsteen base PAIR, transcription/DNA complex; HET:
5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Length = 60
Score = 23.4 bits (51), Expect = 3.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 13 TERQIKIWFQNRRMKWKK 30
+ QIK W NRR K K
Sbjct: 41 SRIQIKNWVSNRRRKEKT 58
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 23.8 bits (50), Expect = 3.1
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 15 RQIKIWFQNRRMKWKKE 31
++ W NRR K++
Sbjct: 54 EIVRTWIGNRRRKYRLM 70
>2e19_A Transcription factor 8; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 64
Score = 23.5 bits (50), Expect = 3.7
Identities = 3/17 (17%), Positives = 6/17 (35%)
Query: 14 ERQIKIWFQNRRMKWKK 30
+K WF+ +
Sbjct: 44 LDVVKKWFEKMQAGQIS 60
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription
regulation, transcriptional repression, DNA- binding
protein; HET: DNA; 2.25A {Saccharomyces cerevisiae}
SCOP: a.4.1.1
Length = 87
Score = 23.7 bits (51), Expect = 3.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 13 TERQIKIWFQNRRMKWK 29
+ QIK W NRR K K
Sbjct: 70 SRIQIKNWVSNRRRKEK 86
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration
calorimetry, protein-DNA complex, transcription/DNA
complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1akh_B* 1apl_C* 1yrn_B*
Length = 83
Score = 23.2 bits (50), Expect = 4.5
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASM 37
+ QIK W RR K K +
Sbjct: 45 SRIQIKNWVAARRAKEKTITIAPEL 69
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices
with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 102
Score = 23.3 bits (49), Expect = 5.0
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVIP 41
TE ++ WF NRR + K+A
Sbjct: 67 TEVRVYNWFANRRKEEAFRQKLAMDAYSS 95
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.445
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 980,296
Number of extensions: 40489
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 72
Length of query: 61
Length of database: 6,701,793
Length adjustment: 32
Effective length of query: 29
Effective length of database: 5,808,321
Effective search space: 168441309
Effective search space used: 168441309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)