RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12003
         (61 letters)



>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
          melanogaster [TaxId: 7227]}
          Length = 56

 Score = 44.8 bits (106), Expect = 5e-09
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query: 13 TERQIKIWFQNRRMKWKKEH 32
          TERQIKIWFQNRRMKWKKE+
Sbjct: 37 TERQIKIWFQNRRMKWKKEN 56


>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 68

 Score = 43.2 bits (102), Expect = 3e-08
 Identities = 11/22 (50%), Positives = 17/22 (77%)

Query: 13 TERQIKIWFQNRRMKWKKEHKM 34
           E +I++WF NRR KW++E K+
Sbjct: 41 PEARIQVWFSNRRAKWRREEKL 62


>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 77

 Score = 42.9 bits (101), Expect = 3e-08
 Identities = 17/21 (80%), Positives = 19/21 (90%)

Query: 13 TERQIKIWFQNRRMKWKKEHK 33
          TERQ+KIWFQNRRMK KK +K
Sbjct: 53 TERQVKIWFQNRRMKMKKINK 73


>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
          (Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 82

 Score = 43.1 bits (101), Expect = 3e-08
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 13 TERQIKIWFQNRRMKWKKEHKMASM 37
          T  ++  WF NRR + K+   +A++
Sbjct: 55 TSLKVYNWFANRRKEIKRRANIAAI 79


>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 58

 Score = 41.4 bits (97), Expect = 9e-08
 Identities = 14/18 (77%), Positives = 16/18 (88%)

Query: 13 TERQIKIWFQNRRMKWKK 30
          +ERQI IWFQNRR+K KK
Sbjct: 41 SERQITIWFQNRRVKEKK 58


>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 88

 Score = 41.5 bits (97), Expect = 1e-07
 Identities = 14/21 (66%), Positives = 16/21 (76%)

Query: 13 TERQIKIWFQNRRMKWKKEHK 33
           E Q+KIWFQNRRMK KK  +
Sbjct: 67 NETQVKIWFQNRRMKQKKRER 87


>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 57

 Score = 40.6 bits (95), Expect = 2e-07
 Identities = 12/18 (66%), Positives = 16/18 (88%)

Query: 13 TERQIKIWFQNRRMKWKK 30
          +ERQ+K WFQNRR KW++
Sbjct: 40 SERQVKTWFQNRRAKWRR 57


>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
          LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 52

 Score = 40.1 bits (94), Expect = 2e-07
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 13 TERQIKIWFQNRRMKWKK 30
            R I+ WF+ RR + K 
Sbjct: 34 DVRSIQRWFRQRRNQEKP 51


>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 65

 Score = 39.9 bits (93), Expect = 4e-07
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 13 TERQIKIWFQNRRMKWKKEHKMAS 36
          TE +I++WFQNRR + +K+H   S
Sbjct: 42 TEARIQVWFQNRRARLRKQHTSVS 65


>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 66

 Score = 39.8 bits (93), Expect = 5e-07
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 13 TERQIKIWFQNRRMKWKKEHKM 34
          + R I++WFQN+R K KK   M
Sbjct: 43 SPRVIRVWFQNKRCKDKKRSIM 64


>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
          {Rat (Rattus rattus) [TaxId: 10117]}
          Length = 78

 Score = 40.1 bits (93), Expect = 5e-07
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 13 TERQIKIWFQNRRMKWKKEHK 33
          TE ++  WF NRR +    HK
Sbjct: 58 TEVRVYNWFANRRKEEAFRHK 78


>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
          (Drosophila melanogaster) [TaxId: 7227]}
          Length = 57

 Score = 39.5 bits (92), Expect = 6e-07
 Identities = 12/19 (63%), Positives = 15/19 (78%)

Query: 13 TERQIKIWFQNRRMKWKKE 31
           E  IK+WFQNRRMK K++
Sbjct: 39 PESTIKVWFQNRRMKDKRQ 57


>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 72

 Score = 39.2 bits (91), Expect = 9e-07
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 13 TERQIKIWFQNRRMKWKKEHKMAS 36
          TE Q + WF+ R  +W++   + S
Sbjct: 42 TEEQTQKWFKQRLAEWRRSEGLPS 65


>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
          {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 68

 Score = 39.1 bits (91), Expect = 9e-07
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 13 TERQIKIWFQNRRMKWKKEHK 33
          T  Q+KIWFQN R K K++ K
Sbjct: 42 TPTQVKIWFQNHRYKMKRQAK 62


>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
          (Drosophila melanogaster) [TaxId: 7227]}
          Length = 67

 Score = 38.8 bits (90), Expect = 1e-06
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 13 TERQIKIWFQNRRMKWKKEHK 33
             Q+KIWF+NRR + K +  
Sbjct: 41 GTAQVKIWFKNRRRRHKIQSD 61


>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 58

 Score = 38.0 bits (88), Expect = 2e-06
 Identities = 13/18 (72%), Positives = 15/18 (83%)

Query: 13 TERQIKIWFQNRRMKWKK 30
          TE Q+KIWFQNRR K K+
Sbjct: 40 TETQVKIWFQNRRAKAKR 57


>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
          melanogaster [TaxId: 7227]}
          Length = 53

 Score = 37.1 bits (86), Expect = 4e-06
 Identities = 11/15 (73%), Positives = 11/15 (73%)

Query: 13 TERQIKIWFQNRRMK 27
           E QIKIWFQN R K
Sbjct: 39 NEAQIKIWFQNARAK 53


>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 60

 Score = 36.3 bits (84), Expect = 1e-05
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 13 TERQIKIWFQNRRMKWKK 30
          +  QIK W  NRR K K 
Sbjct: 41 SRIQIKNWVSNRRRKEKT 58


>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 53

 Score = 35.6 bits (82), Expect = 2e-05
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 13 TERQIKIWFQNRRMKWK 29
          T  Q+++WF N+RM+ K
Sbjct: 37 TPLQVRVWFINKRMRSK 53


>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 77

 Score = 36.2 bits (83), Expect = 2e-05
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 13 TERQIKIWFQNRRMKWKKEHKMASMNVIP 41
          T  Q+KIWFQN R K K+          P
Sbjct: 49 TPTQVKIWFQNHRYKTKRAQNEKGYEGHP 77


>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 73

 Score = 35.7 bits (82), Expect = 2e-05
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 13 TERQIKIWFQNRRMKWKKEHK 33
          T  Q+  WF N+R+++KK   
Sbjct: 44 TVSQVSNWFGNKRIRYKKNIG 64


>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
          cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 80

 Score = 35.4 bits (81), Expect = 3e-05
 Identities = 4/19 (21%), Positives = 7/19 (36%)

Query: 13 TERQIKIWFQNRRMKWKKE 31
            + +KIW  N +      
Sbjct: 61 RRQVLKIWMHNNKNSGPSS 79


>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 58

 Score = 34.9 bits (80), Expect = 4e-05
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 13 TERQIKIWFQNRRMKWKK 30
           +  +++WF NRR + K+
Sbjct: 39 EKEVVRVWFCNRRQREKR 56


>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
          LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 59

 Score = 34.4 bits (79), Expect = 5e-05
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 13 TERQIKIWFQNRRMKWK 29
          + R+I+ WF++RR + K
Sbjct: 42 SVRKIQCWFRHRRNQDK 58


>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 71

 Score = 34.3 bits (78), Expect = 8e-05
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 13 TERQIKIWFQNRRMKWKKEHK 33
           +  I  +FQN+R   K    
Sbjct: 48 PKHTIIKFFQNQRYHVKHSGP 68


>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 62

 Score = 33.9 bits (78), Expect = 1e-04
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 13 TERQIKIWFQNRRMKWKK 30
          T  Q+  WF N R +  +
Sbjct: 45 TLLQVNNWFINARRRILQ 62


>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
          ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 76

 Score = 33.9 bits (77), Expect = 1e-04
 Identities = 5/26 (19%), Positives = 12/26 (46%)

Query: 13 TERQIKIWFQNRRMKWKKEHKMASMN 38
          T R+I  WF  ++     + +   ++
Sbjct: 44 TRREIDAWFTEKKKSKALKEEKMEID 69


>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 60

 Score = 33.0 bits (75), Expect = 2e-04
 Identities = 10/19 (52%), Positives = 16/19 (84%)

Query: 13 TERQIKIWFQNRRMKWKKE 31
          TE ++++WF+NRR KW+K 
Sbjct: 41 TEARVRVWFKNRRAKWRKR 59


>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 57

 Score = 32.6 bits (74), Expect = 3e-04
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 13 TERQIKIWFQNRRMKWKKEH 32
           +  I++WF NRR K K+ +
Sbjct: 38 EKEVIRVWFSNRRQKEKRIN 57


>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 50

 Score = 32.5 bits (74), Expect = 3e-04
 Identities = 3/13 (23%), Positives = 5/13 (38%)

Query: 13 TERQIKIWFQNRR 25
              +  +F N R
Sbjct: 38 ELSTVSNFFMNAR 50


>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 67

 Score = 32.7 bits (74), Expect = 3e-04
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 13 TERQIKIWFQNRRMKWKK 30
           +  +++WF NRR K K+
Sbjct: 48 EKDVVRVWFCNRRQKGKR 65


>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 76

 Score = 29.3 bits (65), Expect = 0.007
 Identities = 5/21 (23%), Positives = 7/21 (33%)

Query: 13 TERQIKIWFQNRRMKWKKEHK 33
             +I  WF + R   K    
Sbjct: 43 PRPEIIQWFGDTRYALKHGQL 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.445 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 251,778
Number of extensions: 8791
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 33
Length of query: 61
Length of database: 2,407,596
Length adjustment: 31
Effective length of query: 30
Effective length of database: 1,981,966
Effective search space: 59458980
Effective search space used: 59458980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.0 bits)