BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12005
         (188 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EEL|A Chain A, Solution Structure Of The Cide-N Domain Of Human Cell
          Death Activator Cide-A
          Length = 91

 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 10 GIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFS 68
          G   P +V + +R  + G++A SL++L+++    L +++ +V +VL+ DGT VD EE+F 
Sbjct: 7  GPARPFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQ 66

Query: 69 TLEKNTSLMILSKNDKWTPRSETTA 93
          TL  NT  MIL K  KW P   ++ 
Sbjct: 67 TLGDNTHFMILEKGQKWMPSGPSSG 91


>pdb|1D4B|A Chain A, Cide-N Domain Of Human Cide-B
          Length = 122

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 45/74 (60%)

Query: 14  PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKN 73
           P +V D  R  + G+ A + ++L+ +A   L ++ V+ +VL+ DGT VD E++F  LE +
Sbjct: 37  PFRVCDHKRTIRKGLTAATRQELLAKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDD 96

Query: 74  TSLMILSKNDKWTP 87
           T LM+L     W+P
Sbjct: 97  TCLMVLQSGQSWSP 110


>pdb|1F2R|I Chain I, Nmr Structure Of The Heterodimeric Complex Between Cad
          Domains Of Cad And Icad
          Length = 100

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMS---SVVKVVLDLDGTEVDEEEYFSTL 70
          PC +  ++   + G+ A SL++L ++A   L +    + + +VL  DGT VD+++YF  L
Sbjct: 20 PCLLRRNHSRDQHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL 79

Query: 71 EKNTSLMILSKNDKWT 86
            NT  + L+ N+KWT
Sbjct: 80 PSNTKFVALACNEKWT 95


>pdb|1IBX|B Chain B, Nmr Structure Of Dff40 And Dff45 N-Terminal Domain Complex
          Length = 145

 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 14  PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMS---SVVKVVLDLDGTEVDEEEYFSTL 70
           PC +  +   ++ G+ A  L+DL ++A   L +    + V +VL  DGT VD+++YF  L
Sbjct: 65  PCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCL 124

Query: 71  EKNTSLMILSKNDKW 85
             NT  + L+ N+KW
Sbjct: 125 PSNTKFVALASNEKW 139


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.133    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,238,643
Number of Sequences: 62578
Number of extensions: 180172
Number of successful extensions: 354
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 6
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)