Query psy12005
Match_columns 188
No_of_seqs 121 out of 176
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 16:16:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eel_A Cell death activator CI 100.0 2.2E-37 7.5E-42 232.8 9.8 84 7-90 4-88 (91)
2 1d4b_A CIDE B, human cell deat 100.0 5.6E-36 1.9E-40 235.3 7.3 83 9-91 32-114 (122)
3 1f2r_I Inhibitor of caspase-ac 100.0 1.5E-35 5E-40 226.2 8.2 83 7-90 13-99 (100)
4 1ibx_B Chimera of IGG binding 100.0 5.5E-35 1.9E-39 235.1 6.8 83 8-90 59-144 (145)
5 1v0d_A DNA fragmentation facto 100.0 3.9E-32 1.3E-36 241.6 0.0 105 10-115 6-111 (329)
6 1iyr_A DFF45, DNA fragmentatio 93.3 0.05 1.7E-06 41.8 2.9 66 108-173 20-87 (111)
7 2al3_A TUG long isoform; TUG U 70.3 3.9 0.00013 30.2 3.5 61 20-81 18-81 (90)
8 1ndd_A NEDD8, protein (ubiquit 62.7 16 0.00053 23.4 5.0 33 31-65 21-54 (76)
9 2kd0_A LRR repeats and ubiquit 62.4 8.4 0.00029 26.5 3.8 47 31-79 32-81 (85)
10 3n3k_B Ubiquitin; hydrolase, p 62.2 13 0.00044 24.5 4.6 34 31-66 24-58 (85)
11 3phx_B Ubiquitin-like protein 61.7 16 0.00054 24.1 5.0 34 31-66 25-59 (79)
12 3a9j_A Ubiquitin; protein comp 60.2 17 0.00059 23.1 4.9 33 31-65 21-54 (76)
13 2faz_A Ubiquitin-like containi 59.2 19 0.00064 23.5 5.0 32 31-64 25-57 (78)
14 2bwf_A Ubiquitin-like protein 58.6 20 0.00069 23.1 5.0 32 31-64 24-56 (77)
15 1xr4_A Putative citrate lyase 56.9 8.7 0.0003 35.5 3.9 36 27-62 460-502 (509)
16 1ip9_A BEM1 protein; ubiquitin 54.0 12 0.00043 27.3 3.6 70 9-79 7-83 (85)
17 3mtn_B UBA80, ubcep1, ubiquiti 53.1 18 0.00061 23.8 4.1 33 31-65 24-57 (85)
18 2dzi_A Ubiquitin-like protein 51.4 36 0.0012 22.0 5.4 32 31-64 28-60 (81)
19 3k9o_B Ubiquitin, UBB+1; E2-25 49.2 30 0.001 23.5 4.9 47 31-79 22-72 (96)
20 2fnj_B Transcription elongatio 48.0 21 0.00073 27.0 4.2 69 31-103 22-101 (118)
21 2klc_A Ubiquilin-1; ubiquitin- 47.4 38 0.0013 23.9 5.3 46 31-78 45-93 (101)
22 3dbh_I NEDD8; cell cycle, acti 47.4 32 0.0011 22.7 4.7 33 31-65 33-66 (88)
23 1sif_A Ubiquitin; hydrophobic 46.9 23 0.00079 24.2 4.0 46 31-78 30-78 (88)
24 2kk8_A Uncharacterized protein 46.4 27 0.00091 23.9 4.2 32 31-64 31-64 (84)
25 2bkf_A Zinc-finger protein NBR 46.2 53 0.0018 24.0 5.9 59 12-70 6-70 (87)
26 1wh3_A 59 kDa 2'-5'-oligoadeny 45.3 22 0.00075 23.7 3.6 46 31-78 28-76 (87)
27 4dwf_A HLA-B-associated transc 44.0 48 0.0016 22.2 5.2 49 31-81 26-77 (90)
28 3v6c_B Ubiquitin; structural g 44.0 28 0.00096 23.7 4.0 33 31-65 38-71 (91)
29 4eew_A Large proline-rich prot 43.5 39 0.0013 22.6 4.7 32 31-64 38-70 (88)
30 2dnf_A Doublecortin domain-con 43.3 63 0.0021 23.8 6.1 55 29-87 38-93 (108)
31 2hj0_A Putative citrate lyase, 42.8 18 0.00062 33.5 3.7 36 27-62 464-506 (519)
32 1yx5_B Ubiquitin; proteasome, 42.8 46 0.0016 22.9 5.1 46 31-78 21-69 (98)
33 1wgd_A Homocysteine-responsive 42.4 69 0.0024 21.8 5.9 48 30-79 29-83 (93)
34 2uyz_B Small ubiquitin-related 41.9 21 0.00072 23.4 3.0 33 31-64 24-56 (79)
35 1v5t_A 8430435I17RIK protein; 41.1 58 0.002 22.3 5.4 54 30-83 27-84 (90)
36 1wx7_A Ubiquilin 3; ubiquitin- 40.5 85 0.0029 22.0 6.3 47 31-79 37-86 (106)
37 1j8c_A Ubiquitin-like protein 39.8 50 0.0017 24.5 5.1 46 31-78 52-100 (125)
38 1u9l_A Transcription elongatio 39.7 13 0.00043 25.8 1.6 39 125-163 28-67 (70)
39 1yqb_A Ubiquilin 3; structural 39.7 37 0.0013 24.0 4.2 46 31-78 42-90 (100)
40 1wy8_A NP95-like ring finger p 39.2 37 0.0013 22.7 4.0 47 30-78 29-78 (89)
41 2hj8_A Interferon-induced 17 k 39.1 33 0.0011 23.3 3.7 46 31-78 25-73 (88)
42 1wj6_A KIAA0049 protein, RSGI 37.3 70 0.0024 24.0 5.5 71 11-81 13-94 (101)
43 2qmm_A UPF0217 protein AF_1056 37.2 32 0.0011 28.3 4.0 42 29-79 110-151 (197)
44 1wju_A NEDD8 ultimate buster-1 36.9 84 0.0029 22.9 5.8 46 31-80 40-90 (100)
45 4fbj_B NEDD8; effector-HOST ta 36.8 77 0.0026 21.4 5.4 33 31-65 21-54 (88)
46 3m62_B UV excision repair prot 36.5 39 0.0013 24.0 4.0 51 31-83 22-76 (106)
47 2ojr_A Ubiquitin; lanthide-bin 36.4 52 0.0018 23.4 4.6 33 31-65 56-89 (111)
48 2l7r_A Ubiquitin-like protein 35.9 53 0.0018 22.6 4.5 46 31-78 38-86 (93)
49 4hcn_B Polyubiquitin, ubiquiti 35.8 37 0.0013 23.6 3.6 46 31-78 43-91 (98)
50 4ajy_B Transcription elongatio 33.5 66 0.0022 24.4 4.9 71 16-88 6-88 (118)
51 1uel_A HHR23B, UV excision rep 33.4 1.1E+02 0.0038 20.9 5.9 47 31-79 21-73 (95)
52 2kan_A Uncharacterized protein 32.3 77 0.0026 22.0 4.9 46 31-78 35-84 (94)
53 3goe_A DNA repair protein RAD6 32.1 36 0.0012 24.8 3.1 41 31-71 30-70 (82)
54 2kdi_A Ubiquitin, vacuolar pro 32.1 78 0.0027 22.8 5.0 33 31-65 30-63 (114)
55 2wyq_A HHR23A, UV excision rep 31.4 96 0.0033 20.2 5.0 46 31-78 26-77 (85)
56 1wxv_A BAG-family molecular ch 31.3 1.2E+02 0.0041 20.4 8.0 48 31-80 32-83 (92)
57 3b08_A Polyubiquitin-C, ubiqui 30.7 84 0.0029 22.6 5.0 48 31-80 21-72 (152)
58 1wf9_A NPL4 family protein; be 29.5 1.2E+02 0.0041 21.5 5.6 39 15-53 10-51 (107)
59 3a4r_A Nfatc2-interacting prot 29.0 1.2E+02 0.0041 20.4 5.3 33 31-64 29-61 (79)
60 3vdz_A Ubiquitin-40S ribosomal 28.8 92 0.0032 22.2 4.9 33 31-65 56-89 (111)
61 3m63_B Ubiquitin domain-contai 28.4 1.2E+02 0.004 21.4 5.3 47 31-79 48-97 (101)
62 1x1m_A Ubiquitin-like protein 27.2 1.3E+02 0.0045 21.2 5.4 48 30-79 44-97 (107)
63 3rt3_B Ubiquitin-like protein 27.2 1.9E+02 0.0064 21.3 6.8 50 31-80 23-76 (159)
64 1wyw_B Ubiquitin-like protein 26.3 51 0.0017 22.9 3.0 33 31-64 42-74 (97)
65 1ttn_A DC-UBP, dendritic cell- 26.1 1.1E+02 0.0038 21.5 4.8 47 31-79 44-93 (106)
66 2kjr_A CG11242; UBL, ubiquitin 26.0 1.6E+02 0.0055 20.7 5.7 30 30-59 37-67 (95)
67 1wgg_A Ubiquitin carboxyl-term 25.2 51 0.0017 23.1 2.8 51 30-83 27-80 (96)
68 3b08_A Polyubiquitin-C, ubiqui 24.2 1.3E+02 0.0044 21.5 5.0 46 31-78 97-145 (152)
69 3u30_A Ubiquitin, linear DI-ub 23.1 1.2E+02 0.0042 22.8 4.9 48 31-80 41-92 (172)
70 2pjh_A Protein NPL4, nuclear p 22.8 44 0.0015 23.0 2.1 41 15-55 7-49 (80)
71 3fys_A Protein DEGV; fatty aci 22.7 8.5 0.00029 33.3 -2.1 60 12-72 24-88 (315)
72 3aia_A UPF0217 protein MJ1640; 22.3 81 0.0028 26.2 3.9 42 29-79 121-162 (211)
73 3bwv_A Putative 5'(3')-deoxyri 22.2 24 0.00083 26.0 0.6 17 51-67 6-22 (180)
74 3b1l_X E3 ubiquitin-protein li 27.4 19 0.00066 23.3 0.0 33 31-64 21-53 (76)
75 1wx8_A Riken cDNA 4931431F19; 21.6 72 0.0025 21.7 3.0 46 31-78 37-85 (96)
76 2kc2_A Talin-1, F1; FERM, adhe 21.4 1.2E+02 0.0041 23.2 4.5 53 3-55 2-58 (128)
77 2daf_A FLJ35834 protein; hypot 21.3 65 0.0022 24.6 2.9 66 14-81 17-89 (118)
78 2ktr_A Sequestosome-1; autopha 21.3 1E+02 0.0035 23.4 4.0 32 30-61 56-90 (117)
79 3kcn_A Adenylate cyclase homol 21.1 39 0.0013 23.6 1.6 29 145-173 107-135 (151)
80 3rt3_B Ubiquitin-like protein 20.6 1.6E+02 0.0054 21.7 5.0 32 31-64 102-134 (159)
81 1k8r_B Protein kinase BYR2; si 20.5 2.8E+02 0.0096 20.9 6.9 64 19-82 7-79 (110)
82 2i7d_A 5'(3')-deoxyribonucleot 20.0 29 0.00099 25.9 0.7 17 51-67 4-20 (193)
No 1
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=232.81 Aligned_cols=84 Identities=38% Similarity=0.654 Sum_probs=80.3
Q ss_pred ccCCCCCceeEecCCCceEeEEeeCCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhccCCCCceEeeecCCCee
Q psy12005 7 EEDGIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKW 85 (188)
Q Consensus 7 ~e~~~~KPfKV~~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge~W 85 (188)
.+.+++|||||||++|++||||+|+||+||+.|||++|+++. +++|||+||||+|||||||+|||+||+||+|++||+|
T Consensus 4 ~~~~~~kpfkV~~~~Rs~k~GV~A~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp~nT~lmvL~~ge~W 83 (91)
T 2eel_A 4 GSSGPARPFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMILEKGQKW 83 (91)
T ss_dssp CCSSCCEEEEEECTTSCCCEEEEESSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSCSSEEEEEEETTCCC
T ss_pred ccCCCCCCEEEecCCCCeEEeEEcCCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCCCCCEEEEEcCCCcc
Confidence 467889999999999999999999999999999999999976 9999999999999999999999999999999999999
Q ss_pred ccCCC
Q psy12005 86 TPRSE 90 (188)
Q Consensus 86 ~p~~~ 90 (188)
+|...
T Consensus 84 ~p~~~ 88 (91)
T 2eel_A 84 MPSGP 88 (91)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 99754
No 2
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=100.00 E-value=5.6e-36 Score=235.35 Aligned_cols=83 Identities=33% Similarity=0.577 Sum_probs=79.7
Q ss_pred CCCCCceeEecCCCceEeEEeeCCHHHHHHHHHHHhCCCCceEEEEccCCcEEechhhhccCCCCceEeeecCCCeeccC
Q psy12005 9 DGIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKWTPR 88 (188)
Q Consensus 9 ~~~~KPfKV~~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge~W~p~ 88 (188)
.+++|||||||++|++||||+|+||+||+.|||++|+++.+++|||+||||+|||||||+|||+||+||+|++||+|.|+
T Consensus 32 ~~~~kPfKV~~~~Rs~k~GV~A~SL~EL~~K~~~~l~l~~~~~lvLeeDGT~VddEeYF~tLp~nT~lmvL~~gq~W~p~ 111 (122)
T 1d4b_A 32 PPPQRPFRVCDHKRTIRKGLTAATRQELLAKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSPT 111 (122)
T ss_dssp SCCCEEEEEECSSSSCEEEEEECCSSTHHHHHHHHHSCCSSCEEEETTTTEEECSTHHHHHSSSCCCCCEECSSCCCCCC
T ss_pred CCCCCCEEEecCCCCeEEeEEcCCHHHHHHHHHHHhccCCCcEEEEEeCCcEEechhHhhcCCCCCEEEEecCCCcccCC
Confidence 67789999999999999999999999999999999999669999999999999999999999999999999999999997
Q ss_pred CCC
Q psy12005 89 SET 91 (188)
Q Consensus 89 ~~~ 91 (188)
..+
T Consensus 112 ~~~ 114 (122)
T 1d4b_A 112 RSG 114 (122)
T ss_dssp CCS
T ss_pred Ccc
Confidence 754
No 3
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=100.00 E-value=1.5e-35 Score=226.21 Aligned_cols=83 Identities=33% Similarity=0.540 Sum_probs=76.9
Q ss_pred ccCCCCCceeEe-cCCCceEeEEeeCCHHHHHHHHHHHhCCCC---ceEEEEccCCcEEechhhhccCCCCceEeeecCC
Q psy12005 7 EEDGIGLPCKVV-DSNREKKIGIVALSLKDLMNRARLKLGMSS---VVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKN 82 (188)
Q Consensus 7 ~e~~~~KPfKV~-~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~---~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~g 82 (188)
.+.+++|||||| |++|+ ||||+|+||+||+.|||++|+++. +++|||+||||+|||||||+|||+||+||+|++|
T Consensus 13 ~~~~~~kPfkV~~~~~r~-k~GV~A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp~nT~lmvL~~g 91 (100)
T 1f2r_I 13 DDVRPLKPCLLRRNHSRD-QHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLPSNTKFVALACN 91 (100)
T ss_dssp TTSCCCEEEEEEETTEEE-EEEEEESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSCSCCEEEEECSS
T ss_pred ccCCCCCCEEEeeCCCcc-EEeEEcCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCCCCCEEEEEcCC
Confidence 388999999999 55555 999999999999999999999964 6999999999999999999999999999999999
Q ss_pred CeeccCCC
Q psy12005 83 DKWTPRSE 90 (188)
Q Consensus 83 e~W~p~~~ 90 (188)
|+|+|...
T Consensus 92 e~W~p~~~ 99 (100)
T 1f2r_I 92 EKWTYNDS 99 (100)
T ss_dssp SCCSCTTC
T ss_pred CccCCCCC
Confidence 99999764
No 4
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=100.00 E-value=5.5e-35 Score=235.14 Aligned_cols=83 Identities=33% Similarity=0.500 Sum_probs=80.1
Q ss_pred cCCCCCceeEecCCCceEeEEeeCCHHHHHHHHHHHhCCCC---ceEEEEccCCcEEechhhhccCCCCceEeeecCCCe
Q psy12005 8 EDGIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS---VVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDK 84 (188)
Q Consensus 8 e~~~~KPfKV~~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~---~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge~ 84 (188)
|.+++|||||||++|++||||+|+||+||+.|||++|+++. +++|||++|||+|||||||+|||+||+||+|++||+
T Consensus 59 E~~~~KPfKV~d~~Rs~KkGV~A~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tLp~nT~LmvL~~gek 138 (145)
T 1ibx_B 59 EIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTKFVALASNEK 138 (145)
T ss_dssp SCSSCCCCBCBCSSCCSBCCCCCSSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHSCSSCBEEEECSSCC
T ss_pred cccCCccEEEecCCCCeEEeEEcCCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcCCCCCEEEEECCCCc
Confidence 88999999999999999999999999999999999999964 899999999999999999999999999999999999
Q ss_pred eccCCC
Q psy12005 85 WTPRSE 90 (188)
Q Consensus 85 W~p~~~ 90 (188)
|.|+..
T Consensus 139 W~p~~~ 144 (145)
T 1ibx_B 139 WAYNNS 144 (145)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 999764
No 5
>1v0d_A DNA fragmentation factor 40 kDa subunit; hydrolase, nuclease, caspase-activated DNAse; HET: DNA; 2.6A {Mus musculus} SCOP: d.4.1.7 PDB: 1f2r_C 1c9f_A 1ibx_A*
Probab=99.96 E-value=3.9e-32 Score=241.58 Aligned_cols=105 Identities=19% Similarity=0.278 Sum_probs=18.6
Q ss_pred CCCCceeEecCCCceEeEEeeCCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhccCCCCceEeeecCCCeeccC
Q psy12005 10 GIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKWTPR 88 (188)
Q Consensus 10 ~~~KPfKV~~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge~W~p~ 88 (188)
+++|||||||++|++|+||+|+||+||+.|||++|+++. +++|||+||||+| |||||+|||+||+||+|.+||+|+|.
T Consensus 6 ~~~rPfKV~d~~Rs~kkGV~A~SL~EL~~K~~~kl~l~~~~~~LvLeeDGTeV-dEeYF~tLp~nT~LmvL~~gq~W~~~ 84 (329)
T 1v0d_A 6 RQPKCVKLRALHSACKFGVAARSCQELLRKGCVRFQLPMPGSRLCLYEDGTEV-TDDCFPGLPNDAELLLLTAGETWHGY 84 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEecCCCCccccEEcCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEe-eHHHHhcCCCCCEEEEecCCCccccC
Confidence 578999999999999999999999999999999999987 9999999999999 99999999999999999999999999
Q ss_pred CCCccceeccccccchhHHHHHHHhhc
Q psy12005 89 SETTATLTLERNETNNDVTGFLTKIHG 115 (188)
Q Consensus 89 ~~~~~~~~l~~~~~d~~~~~l~~qL~~ 115 (188)
..|+..+..+..+|.+.+.+.|++|=.
T Consensus 85 ~sD~~~~l~a~r~~~~~l~~~a~~lls 111 (329)
T 1v0d_A 85 VSDITRFLSVFNEPHAGVIQAARQQLS 111 (329)
T ss_dssp CTTHHHHHHHTTSCSSTTHHHHHHHHH
T ss_pred cchHHHHHHHhhccchHHHHHHHHHhh
Confidence 999888877777876545556666433
No 6
>1iyr_A DFF45, DNA fragmentation factor alpha subunit; apoptosis, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; NMR {Homo sapiens} SCOP: a.164.1.1 PDB: 1koy_A*
Probab=93.27 E-value=0.05 Score=41.80 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=56.3
Q ss_pred HHHHHhhcCce-eeecCccchhhhcCCCCchhhhhcc-chHHHHHHHHHhhhhhhhccchhhhhhHHH
Q psy12005 108 GFLTKIHGNNG-VSILGGLELELLSDMDPESLTDIIP-DKLFLDQFKEVSSRYFSNKNHHSKETKSEK 173 (188)
Q Consensus 108 ~l~~qL~~dl~-i~ll~~~dLq~L~dm~~~~La~~~~-~~~~~~~lqet~~r~L~~r~e~rqs~~Ll~ 173 (188)
.+..-||+-++ =..||..|||+...=||.-||..++ +..+++.+|.+|.|.|.+|-|.=||-.-|.
T Consensus 20 ~iL~~LKeK~aPElsLSsqdLElV~kedpkALa~aL~Wd~~kt~avqqAC~qELs~RlQQVQsL~SLr 87 (111)
T 1iyr_A 20 HILTALREKQAPELSLSSQDLELVTKEDPKALAVALNWDIKKTETVQEACERELALRLQQTQSLHSLR 87 (111)
T ss_dssp HHHHHHHTTCCTTTTSCHHHHHHHHTSCHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHGGGCCCSCC-
T ss_pred HHHHHHccCCCccccccHHHHHHHHccCHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566787777 6779999999999999999999996 588999999999999999998888765443
No 7
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=70.27 E-value=3.9 Score=30.17 Aligned_cols=61 Identities=15% Similarity=0.244 Sum_probs=43.9
Q ss_pred CCCceEeEEe-eCCHHHHHHHHHHHhCCCCceEEEEccCCcEEechhh--hccCCCCceEeeecC
Q psy12005 20 SNREKKIGIV-ALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEY--FSTLEKNTSLMILSK 81 (188)
Q Consensus 20 ~~R~~kkGV~-A~SL~EL~~Ka~~~l~l~~~~~LvLeeDGT~VddEeY--F~tLp~nT~lm~L~~ 81 (188)
..|..+.-|. ..+|.|+++.||++|+++. ..-.|...++.||---= |..||+|..|-+...
T Consensus 18 n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~-~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 18 NGRRHTVKVTPSTVLLQVLEDTCRRQDFNP-SEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp TSCEEEECCCTTSBHHHHHHHHHHHTTCCG-GGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCh-hhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 3444444443 3578999999999999984 45577788899974444 556799999988754
No 8
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=62.67 E-value=16 Score=23.38 Aligned_cols=33 Identities=15% Similarity=0.391 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechh
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEE 65 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEe 65 (188)
.+..+|+++.++..+++. ..+|+ ..|...+|+.
T Consensus 21 ~tv~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d~~ 54 (76)
T 1ndd_A 21 DKVERIKERVEEKEGIPPQQQRLI--YSGKQMNDEK 54 (76)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCTTS
T ss_pred ChHHHHHHHHHHHHCcChHHEEEE--ECCEECCCCC
Confidence 678999999999999986 55555 4688886653
No 9
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=62.36 E-value=8.4 Score=26.52 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhcc--CCCCceEeee
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFST--LEKNTSLMIL 79 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~L 79 (188)
.+..+|+++..+..++|. ..+|. ..|...+|+.-+.. +.++..+++.
T Consensus 32 ~TV~~LK~~I~~~~gip~~~qrL~--~~Gk~L~D~~tL~~~gi~~g~~l~l~ 81 (85)
T 2kd0_A 32 CTVKDLKSQLQPITNVLPRGQKLI--FKGKVLVETSTLKQSDVGSGAKLMLM 81 (85)
T ss_dssp SBHHHHHHHHHHHHCCCTTTCEEE--ETTEECCTTCBTTTTTCCTTEEEEEE
T ss_pred CcHHHHHHHHHHHHCcChHHEEEE--ECCeECCCcCCHHHCCCCCCCEEEEE
Confidence 579999999999999986 55555 46888866644443 3355555443
No 10
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=62.23 E-value=13 Score=24.55 Aligned_cols=34 Identities=9% Similarity=0.326 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhh
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEY 66 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeY 66 (188)
.|..+|+++.+++.++|. ..+|+ ..|...+|+.-
T Consensus 24 ~tV~~lK~~i~~~~~ip~~~qrL~--~~g~~L~d~~t 58 (85)
T 3n3k_B 24 DTIENVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRT 58 (85)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEE--ETBEECCTTCB
T ss_pred CcHHHHHHHHHHHHCCCHHHEEEE--ECCeECCCCCC
Confidence 589999999999999986 45554 47888876643
No 11
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=61.68 E-value=16 Score=24.05 Aligned_cols=34 Identities=9% Similarity=0.199 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhh
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEY 66 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeY 66 (188)
.+..+|+++.+++.++|. .-+|+ ..|...+|+.-
T Consensus 25 ~tV~~lK~~i~~~~gip~~~qrL~--~~G~~L~d~~t 59 (79)
T 3phx_B 25 QTVAHLKQQVSGLEGVQDDLFWLT--FEGKPLEDQLP 59 (79)
T ss_dssp SBHHHHHHHHHHHHTCCGGGEEEE--ETTEECCTTSB
T ss_pred ChHHHHHHHHHhhcCCCHHHEEEE--ECCEECCCCCc
Confidence 579999999999999985 44444 57888877643
No 12
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=60.25 E-value=17 Score=23.15 Aligned_cols=33 Identities=9% Similarity=0.355 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechh
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEE 65 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEe 65 (188)
.+..+|+++.++..+++. ..+|. ..|...+|+.
T Consensus 21 ~tv~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d~~ 54 (76)
T 3a9j_A 21 DTIENVKAKIQDKEGIPPDQQRLI--FAGKQLEDGR 54 (76)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCTTC
T ss_pred CcHHHHHHHHHHHHCcCHHHeEEE--ECCeECCCCC
Confidence 579999999999999985 55554 4688876653
No 13
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=59.23 E-value=19 Score=23.55 Aligned_cols=32 Identities=6% Similarity=0.289 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEech
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEE 64 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddE 64 (188)
.+..+|+++.+++.+++. ..+|+ ..|...+|+
T Consensus 25 ~tv~~lK~~i~~~~gip~~~qrL~--~~g~~L~d~ 57 (78)
T 2faz_A 25 TKVEELRRKIQELFHVEPGLQRLF--YRGKQMEDG 57 (78)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCTT
T ss_pred CCHHHHHHHHHHHHCcChhhEEEE--ECCEECCCC
Confidence 589999999999999986 55555 468877665
No 14
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=58.61 E-value=20 Score=23.10 Aligned_cols=32 Identities=6% Similarity=0.205 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEech
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEE 64 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddE 64 (188)
.+..+|+.+.++..+++. ..+|. ..|...+|+
T Consensus 24 ~tV~~LK~~i~~~~~i~~~~qrL~--~~gk~L~d~ 56 (77)
T 2bwf_A 24 STVLQFKEAINKANGIPVANQRLI--YSGKILKDD 56 (77)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCTT
T ss_pred CcHHHHHHHHHHHhCCCHHHEEEE--ECCeEcCCC
Confidence 579999999999999986 55554 568887665
No 15
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=56.86 E-value=8.7 Score=35.48 Aligned_cols=36 Identities=33% Similarity=0.505 Sum_probs=29.5
Q ss_pred EEeeCCHHHHHHHHHHHhCCCC-------ceEEEEccCCcEEe
Q psy12005 27 GIVALSLKDLMNRARLKLGMSS-------VVKVVLDLDGTEVD 62 (188)
Q Consensus 27 GV~A~SL~EL~~Ka~~~l~l~~-------~~~LvLeeDGT~Vd 62 (188)
+|+-.+.+||++++...+++|. .+-+|-+.|||++|
T Consensus 460 ~iAh~~~e~L~~~a~~~~~~p~~~~~~~~~~~~~~~rd~~~~d 502 (509)
T 1xr4_A 460 GVALMTIEQLQQRAEQLTGKPQPIEFTDRVVAVVRYRDGSVID 502 (509)
T ss_dssp TCCCBCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECTTSCEEE
T ss_pred CCCcCCHHHHHHHHHHhhCCCccCCCCCeEEEEEEecCCcEEE
Confidence 3444689999999999999875 56678889999996
No 16
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=54.05 E-value=12 Score=27.33 Aligned_cols=70 Identities=9% Similarity=0.124 Sum_probs=45.9
Q ss_pred CCCCCceeEecCCCceEeEEeeC---CHHHHHHHHHHHhCCCCceEEEEc---cCCcEEechhhh-ccCCCCceEeee
Q psy12005 9 DGIGLPCKVVDSNREKKIGIVAL---SLKDLMNRARLKLGMSSVVKVVLD---LDGTEVDEEEYF-STLEKNTSLMIL 79 (188)
Q Consensus 9 ~~~~KPfKV~~~~R~~kkGV~A~---SL~EL~~Ka~~~l~l~~~~~LvLe---eDGT~VddEeYF-~tLp~nT~lm~L 79 (188)
.|...+.||.=.=-..=..|... ++++|.+|-++++.+. ...++.+ ..|+++.+++=| ..+..|.++++.
T Consensus 7 ~pq~~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~-~~~l~~ykde~~g~~i~sD~dl~~aiqrn~KL~l~ 83 (85)
T 1ip9_A 7 TSGLKTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD-NFKLQTKLFDGSGEEIKTDSQVSNIIQAKLKISVH 83 (85)
T ss_dssp CCCCCCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS-CEEEEECCSSSCCSCCCSHHHHHHHHHTTCCEEEE
T ss_pred CCccCceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc-ceEEEEecCCCCCCcccCHHHHHHHHHhcCeeEEe
Confidence 34556666543332333444433 6999999999999996 4566653 378877755544 457888888875
No 17
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=53.07 E-value=18 Score=23.76 Aligned_cols=33 Identities=9% Similarity=0.355 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechh
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEE 65 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEe 65 (188)
.+..+|+++.+++.++|. ..+|+ ..|...+|+.
T Consensus 24 ~tV~~lK~~i~~~~~i~~~~qrL~--~~g~~L~d~~ 57 (85)
T 3mtn_B 24 DTIENVKAKIQDKEGIPPDQQRLI--FAGKQLEDGR 57 (85)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCEEE--ETTEECCTTS
T ss_pred CCHHHHHHHHHHHHCcChHHEEEE--ECCEECCCCC
Confidence 579999999999999986 55555 5788887664
No 18
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.45 E-value=36 Score=22.03 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEech
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEE 64 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddE 64 (188)
.+..+|+++.++..+++. ..+|.. .|...+|+
T Consensus 28 ~tV~~LK~~i~~~~~i~~~~qrL~~--~gk~L~d~ 60 (81)
T 2dzi_A 28 ELVSTLKQLVSEKLNVPVRQQRLLF--KGKALADG 60 (81)
T ss_dssp CBHHHHHHHHHHHTCCCTTTCEEEE--TTEECCTT
T ss_pred CcHHHHHHHHHHHHCcCHHHEEEEE--CCeECCCC
Confidence 679999999999999986 666654 58877655
No 19
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=49.22 E-value=30 Score=23.48 Aligned_cols=47 Identities=15% Similarity=0.386 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhcc--CCCC-ceEeee
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFST--LEKN-TSLMIL 79 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~t--Lp~n-T~lm~L 79 (188)
.+..+|+++.++..+++. ..+|+ ..|...+|+.-+.. +.++ |..|++
T Consensus 22 ~TV~~LK~~i~~~~gip~~~qrL~--~~G~~L~d~~tL~~~~i~~~~~i~l~~ 72 (96)
T 3k9o_B 22 DTIENVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHLVL 72 (96)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCHHHHHHHHHhhhCCChhHEEEE--ECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 478999999999999986 55555 58888876643332 3344 444443
No 20
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=47.96 E-value=21 Score=27.04 Aligned_cols=69 Identities=9% Similarity=0.079 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhc--cC--------CCCceEeeecCCCeeccCCCCccceeccc
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFS--TL--------EKNTSLMILSKNDKWTPRSETTATLTLER 99 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~--tL--------p~nT~lm~L~~ge~W~p~~~~~~~~~l~~ 99 (188)
.+..+|++|..++.+++. .-+|. ..|...+|+.=+. .+ .+-|.-++|+.|-.|.+-. +..|+.--
T Consensus 22 dTV~~lK~kI~~~egIP~~qQrLi--~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr~~g~fe~l~--i~~~s~pp 97 (118)
T 2fnj_B 22 STVFELKRIVEGILKRPPEEQRLY--KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADDTFEALR--IEPFSSPP 97 (118)
T ss_dssp SBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEBSSSCBCCCC--BCCCCCCC
T ss_pred ChHHHHHHHHHHHhCCCHHHeEEE--ECCeECCCCCCHHHcCcccccccCCCCCEEEEEecCCCceeeeE--EecCCCCC
Confidence 688999999999999996 55554 5677665552221 12 3567788899888887643 33344333
Q ss_pred cccc
Q psy12005 100 NETN 103 (188)
Q Consensus 100 ~~~d 103 (188)
+=||
T Consensus 98 ~~p~ 101 (118)
T 2fnj_B 98 ELPD 101 (118)
T ss_dssp C---
T ss_pred Ccch
Confidence 3333
No 21
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=47.44 E-value=38 Score=23.88 Aligned_cols=46 Identities=7% Similarity=0.256 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhcc--CCCCceEee
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFST--LEKNTSLMI 78 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~ 78 (188)
.+..+|+.+.++..+++. ..+|. ..|...+|+.-+.. +.++..+.+
T Consensus 45 ~TV~~LK~~I~~~~gip~~~qrLi--~~Gk~L~D~~tL~~~gI~~g~~I~l 93 (101)
T 2klc_A 45 SSVQQFKEEISKRFKSHTDQLVLI--FAGKILKDQDTLSQHGIHDGLTVHL 93 (101)
T ss_dssp CCHHHHHHHHHHHHTCCGGGEEEE--ETTEEECTTCCTGGGTCCTTCEEEE
T ss_pred CCHHHHHHHHHHHHCcChhhEEEE--ECCEECCCcCcHHHcCCCCCCEEEE
Confidence 589999999999999986 55554 46888866533332 334444443
No 22
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=47.37 E-value=32 Score=22.74 Aligned_cols=33 Identities=15% Similarity=0.391 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechh
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEE 65 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEe 65 (188)
.+..+|+++.+++.++|. ..+|+ ..|...+|+.
T Consensus 33 ~tV~~lK~~i~~~~gip~~~qrL~--~~G~~L~d~~ 66 (88)
T 3dbh_I 33 DKVERIKERVEEKEGIPPQQQRLI--YSGKQMNDEK 66 (88)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCCEE--ETTEECCTTS
T ss_pred CCHHHHHHHHHHHHCcCHHHEEEE--ECCeECCCCC
Confidence 478999999999999986 55555 4788877654
No 23
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=46.88 E-value=23 Score=24.19 Aligned_cols=46 Identities=15% Similarity=0.415 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhc--cCCCCceEee
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFS--TLEKNTSLMI 78 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~--tLp~nT~lm~ 78 (188)
.+..+|+++.+++.++|. ..+|+. .|...+|+.-+. .+.++..+.+
T Consensus 30 ~TV~~LK~~I~~~~gip~~~qrL~~--~Gk~L~D~~tL~~~gi~~g~~i~l 78 (88)
T 1sif_A 30 DTIENLKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHL 78 (88)
T ss_dssp SBHHHHHHHHHHHHCCCGGGCEEEE--TTEECCTTSBSGGGTCCTTCEEEE
T ss_pred ChHHHHHHHHHHHHCcChhhEEEEE--CCEECCCCCcHHHcCCCCCCEEEE
Confidence 579999999999999986 556653 688776653222 2345554444
No 24
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=46.38 E-value=27 Score=23.95 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcE-Eech
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTE-VDEE 64 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~-VddE 64 (188)
.+..+|++|..++.++|. .-+|. -.|.. .+|+
T Consensus 31 ~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~lL~D~ 64 (84)
T 2kk8_A 31 DTLLVVKQKIERSQHIPVSKQTLI--VDGIVILRED 64 (84)
T ss_dssp SBHHHHHHHHHHHHTCCGGGEEEE--ETTEECCCSS
T ss_pred ChHHHHHHHHHHHHCcChHHEEEE--ECCEEecCCc
Confidence 579999999999999986 55554 45776 6555
No 25
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=46.23 E-value=53 Score=24.00 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=45.2
Q ss_pred CCceeEecCCCceEeEE-e--eCCHHHHHHHHHHHhCCCCceEEEEccCCcEEe---chhhhccC
Q psy12005 12 GLPCKVVDSNREKKIGI-V--ALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVD---EEEYFSTL 70 (188)
Q Consensus 12 ~KPfKV~~~~R~~kkGV-~--A~SL~EL~~Ka~~~l~l~~~~~LvLeeDGT~Vd---dEeYF~tL 70 (188)
+=+.||.=.....+..| - ..|.+||-...+..|+++....=..+|||-+|- +.||.-.|
T Consensus 6 ~v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~~~~ikY~DEenD~v~i~Sq~E~eEAl 70 (87)
T 2bkf_A 6 QVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEAL 70 (87)
T ss_dssp CEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHHH
T ss_pred eEEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCCceEEEEEcCCCCEEEEecHHHHHHHH
Confidence 44677887888888888 4 689999999999999998644446789997763 56665544
No 26
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=45.32 E-value=22 Score=23.71 Aligned_cols=46 Identities=9% Similarity=0.182 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhcc--CCCCceEee
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFST--LEKNTSLMI 78 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~ 78 (188)
.+..+|+++.+++.+++. ..+|+ ..|...+|+.-+.. +.++..+.+
T Consensus 28 ~tV~~lK~~i~~~~gi~~~~qrL~--~~Gk~L~d~~tL~~~~i~~g~~i~l 76 (87)
T 1wh3_A 28 SFILGLKQQIEDQQGLPKKQQQLE--FQGQVLQDWLGLGIYGIQDSDTLIL 76 (87)
T ss_dssp SBHHHHHHHHHHHTCCCTTTEEEE--ETTEECCSSSBHHHHTCCTTEEEEE
T ss_pred ChHHHHHHHHHHHhCCChHHEEEE--ECCEEccCCCCHHHCCCCCCCEEEE
Confidence 689999999999999986 55555 46888766543332 334444433
No 27
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=44.03 E-value=48 Score=22.24 Aligned_cols=49 Identities=6% Similarity=0.253 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhcc--CCCCceEeeecC
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFST--LEKNTSLMILSK 81 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~L~~ 81 (188)
.+..+|+++.+++.+++. .-+|+ ..|...+|+.-+.. ++..|..|+++.
T Consensus 26 ~tV~~lK~~i~~~~gip~~~qrLi--~~Gk~L~d~~tL~~~~i~g~~i~l~~~~ 77 (90)
T 4dwf_A 26 MNVKEFKEHIAASVSIPSEKQRLI--YQGRVLQDDKKLQEYNVGGKVIHLVERA 77 (90)
T ss_dssp CBHHHHHHHHHHHHTCCGGGEEEE--ETTEECCTTSBGGGGTCTTEEEEEEECC
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEE--ECCeECCCCCCHHHcCCCCcEEEEEecC
Confidence 478999999999999986 55555 46777766532221 245666666654
No 28
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=43.98 E-value=28 Score=23.68 Aligned_cols=33 Identities=9% Similarity=0.355 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechh
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEE 65 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEe 65 (188)
.+..+|+.+.+++.+++. ..+|+ ..|...+|+.
T Consensus 38 ~TV~~LK~~I~~~~gip~~~qrL~--~~Gk~L~D~~ 71 (91)
T 3v6c_B 38 DTIENVKAKIQDKEGIPPDQQRLI--FAGKQLEDGR 71 (91)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCEEE--ETTEECCTTC
T ss_pred CCHHHHHHHHHhhhCCChhhEEEE--ECCeECCCcC
Confidence 478999999999999986 55555 4788876653
No 29
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=43.54 E-value=39 Score=22.61 Aligned_cols=32 Identities=9% Similarity=0.378 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEech
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEE 64 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddE 64 (188)
.+..+|+++.+++.++|. .-+|+ ..|...+|+
T Consensus 38 ~tV~~lK~~i~~~~gip~~~qrLi--~~Gk~L~D~ 70 (88)
T 4eew_A 38 MNVKEFKEHIAASVSIPSEKQRLI--YQGRVLQDD 70 (88)
T ss_dssp CBHHHHHHHHHHHHTCCGGGEEEE--ETTEECCTT
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEE--ECCEECCCC
Confidence 478999999999999986 45554 477777665
No 30
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=43.30 E-value=63 Score=23.78 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=39.9
Q ss_pred eeCCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhccCCCCceEeeecCCCeecc
Q psy12005 29 VALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKWTP 87 (188)
Q Consensus 29 ~A~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge~W~p 87 (188)
...|++.|++...++++++. .++=.-..||+.|.+=+-| .++-.+|+.. .|+..+
T Consensus 38 ~~~sfe~lL~~lT~~v~l~~GaVr~Lyt~~G~~V~~l~dl---~dg~~YVa~g-~E~fk~ 93 (108)
T 2dnf_A 38 TLNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVESGAEL---ENGQFYVAVG-RDKFKK 93 (108)
T ss_dssp HHTCHHHHHHHHHHHCCCTTSSCCEEEETTCCEESSTTSC---CSSCBEEEEC-SSCCCC
T ss_pred cccCHHHHHHHHHHhhCCCCCCEEEEEcCCCCEeCCHHHh---CCCCEEEEeC-CCccee
Confidence 46899999999999999986 3554445799999765544 3666776654 466544
No 31
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=42.84 E-value=18 Score=33.48 Aligned_cols=36 Identities=22% Similarity=0.404 Sum_probs=29.8
Q ss_pred EEeeCCHHHHHHHHHHHhCCCC-------ceEEEEccCCcEEe
Q psy12005 27 GIVALSLKDLMNRARLKLGMSS-------VVKVVLDLDGTEVD 62 (188)
Q Consensus 27 GV~A~SL~EL~~Ka~~~l~l~~-------~~~LvLeeDGT~Vd 62 (188)
+++-.+.+||++++...++++. .+.++.+.|||+||
T Consensus 464 ~ia~~~~~~L~~~a~~~~~~~~~~~~~~~~~~~~~~rdg~~~~ 506 (519)
T 2hj0_A 464 KVPQLTIEELKEKAYAIVGNPQPIQYGDKIVALIEYRDGSLID 506 (519)
T ss_dssp SSCEECHHHHHHHHHHHHCSCCCCCEEEEEEEEEECTTSSEEE
T ss_pred CCCcccHHHHHHHHHHhhCCCcccCCCCceEEEEEecCCcEEE
Confidence 5555789999999999999975 45677888999995
No 32
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=42.79 E-value=46 Score=22.88 Aligned_cols=46 Identities=13% Similarity=0.395 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhcc--CCCCceEee
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFST--LEKNTSLMI 78 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~ 78 (188)
.+..+|+.+.++..+++. ..+|+ ..|...+|+.-+.. +.++..+.+
T Consensus 21 ~TV~~LK~~I~~~~gi~~~~qrL~--~~Gk~L~D~~tL~~~gi~~g~~i~l 69 (98)
T 1yx5_B 21 DTIENVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL 69 (98)
T ss_dssp CBHHHHHHHHHHHTCCCGGGEEEE--ETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHCcChhhEEEE--ECCEECCCCCCHHHcCCCCCCEEEE
Confidence 579999999999999986 55555 46888866533322 334444443
No 33
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=42.40 E-value=69 Score=21.80 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=33.9
Q ss_pred eCCHHHHHHHHHHHh--CCCC-ceEEEEccCCcEEech----hhhccCCCCceEeee
Q psy12005 30 ALSLKDLMNRARLKL--GMSS-VVKVVLDLDGTEVDEE----EYFSTLEKNTSLMIL 79 (188)
Q Consensus 30 A~SL~EL~~Ka~~~l--~l~~-~~~LvLeeDGT~VddE----eYF~tLp~nT~lm~L 79 (188)
..+..+|+++..++. +++. .-+|. ..|...+|+ +|+..+.++.++++.
T Consensus 29 ~~TV~~lK~~I~~~~~~~i~~~~QrLi--~~Gk~L~D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 29 GWSVGHLKAHLSRVYPERPRPEDQRLI--YSGKLLLDHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp TSCHHHHHHHHHHHSTTCCCTTTCEEE--ETTEECCSSSCHHHHSCSSSCSEEEEEE
T ss_pred CCcHHHHHHHHHHHhcCCCChHHeEEE--ECCEECcCcCCHHHHhcCCCCCCEEEEE
Confidence 358999999999998 8886 55665 357777665 555455666666554
No 34
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=41.90 E-value=21 Score=23.43 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHhCCCCceEEEEccCCcEEech
Q psy12005 31 LSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEE 64 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~~~~LvLeeDGT~VddE 64 (188)
.++.+|+++.+++.++|. ....|-.+|..++|+
T Consensus 24 ~tv~~lk~~i~~~~gi~~-~~qrL~~~G~~L~d~ 56 (79)
T 2uyz_B 24 THLKKLKESYCQRQGVPM-NSLRFLFEGQRIADN 56 (79)
T ss_dssp SCTHHHHHHHHHHHTCCG-GGEEEEETTEECCTT
T ss_pred ChHHHHHHHHHHHHCCCc-ccEEEEECCEEeCCC
Confidence 578999999999999985 344455689988766
No 35
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=41.13 E-value=58 Score=22.29 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=36.8
Q ss_pred eCCHHHHHHHHHHHhCCCC-ceEEEEc-cCCcEEechhhhcc--CCCCceEeeecCCC
Q psy12005 30 ALSLKDLMNRARLKLGMSS-VVKVVLD-LDGTEVDEEEYFST--LEKNTSLMILSKND 83 (188)
Q Consensus 30 A~SL~EL~~Ka~~~l~l~~-~~~LvLe-eDGT~VddEeYF~t--Lp~nT~lm~L~~ge 83 (188)
..+..+|+++..++.+++. .-+|..- ..|...+|+.-+.. +.++..+|++..-+
T Consensus 27 ~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~~ 84 (90)
T 1v5t_A 27 DDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTRE 84 (90)
T ss_dssp SSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCCS
T ss_pred CCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecCc
Confidence 4789999999999999986 4444411 57777766644443 45777777765433
No 36
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=40.53 E-value=85 Score=21.97 Aligned_cols=47 Identities=4% Similarity=0.246 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhc--cCCCCceEeee
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFS--TLEKNTSLMIL 79 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~--tLp~nT~lm~L 79 (188)
.+..+|+++..++.+++. ..+|+ ..|.+.+|+.-+. .+.++..+++.
T Consensus 37 ~TV~~LK~~I~~~~gip~~~qrLi--~~Gk~L~D~~tL~~~gi~~g~~i~l~ 86 (106)
T 1wx7_A 37 CTIQQLKEEISQRFKAHPDQLVLI--FAGKILKDPDSLAQCGVRDGLTVHLV 86 (106)
T ss_dssp CCHHHHHHHHHHHHTCCTTTEEEE--ETTEECCTTSCHHHHTCCTTEEEEEE
T ss_pred CcHHHHHHHHHHHHCcChhhEEEE--ECCEECCCcCcHHHcCCCCCCEEEEE
Confidence 579999999999999986 55555 4688886663222 24455555443
No 37
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=39.82 E-value=50 Score=24.46 Aligned_cols=46 Identities=4% Similarity=0.223 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhcc--CCCCceEee
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFST--LEKNTSLMI 78 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~ 78 (188)
.+..+|+.+.+++.+++. ..+|+ ..|.+++|+.-+.. +.++.++.+
T Consensus 52 ~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D~~tL~dygI~~gstI~l 100 (125)
T 1j8c_A 52 SSVQQFKEAISKRFKSQTDQLVLI--FAGKILKDQDTLIQHGIHDGLTVHL 100 (125)
T ss_dssp CCHHHHHHHHHHHHCSCSSSEEEE--ETTEEESTTSCGGGTTCSSSEEEEE
T ss_pred CcHHHHHHHHHHHHCcCcceEEEE--ECCEEcCCCCCHHHcCCCCCCEEEE
Confidence 579999999999999986 55555 46888866533332 234444443
No 38
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=39.71 E-value=13 Score=25.77 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=32.7
Q ss_pred cchhhhcCCCCchhhhhccc-hHHHHHHHHHhhhhhhhcc
Q psy12005 125 LELELLSDMDPESLTDIIPD-KLFLDQFKEVSSRYFSNKN 163 (188)
Q Consensus 125 ~dLq~L~dm~~~~La~~~~~-~~~~~~lqet~~r~L~~r~ 163 (188)
..++-+.-+|+++|+.+-|. ..+++.||+..+..+.++.
T Consensus 28 ~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~~~l~~~~ 67 (70)
T 1u9l_A 28 STLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIA 67 (70)
T ss_dssp CCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999865 8999999999888876654
No 39
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=39.70 E-value=37 Score=24.00 Aligned_cols=46 Identities=4% Similarity=0.239 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhc--cCCCCceEee
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFS--TLEKNTSLMI 78 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~--tLp~nT~lm~ 78 (188)
.+..+|+++.+++.+++. ..+|. ..|...+|+.-+. .+.++..+.+
T Consensus 42 ~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D~~tL~~ygI~~gstI~l 90 (100)
T 1yqb_A 42 CTIQQLKEEISQRFKAHPDQLVLI--FAGKILKDPDSLAQCGVRDGLTVHL 90 (100)
T ss_dssp CBHHHHHHHHHHHHTCCGGGEEEE--ETTEECCTTSBHHHHTCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHCcChhhEEEE--ECCEECCCcCcHHHCCCCCCCEEEE
Confidence 579999999999999986 55554 4688876653222 2345554444
No 40
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=39.17 E-value=37 Score=22.72 Aligned_cols=47 Identities=9% Similarity=0.211 Sum_probs=31.3
Q ss_pred eCCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhc--cCCCCceEee
Q psy12005 30 ALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFS--TLEKNTSLMI 78 (188)
Q Consensus 30 A~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~--tLp~nT~lm~ 78 (188)
-.+..+|+++.+++.+++. ..+|+. .|...+|+.-+. .+.++..+.+
T Consensus 29 ~~tV~~lK~~i~~~~gip~~~qrL~~--~gk~L~d~~tL~~~~i~~g~~i~l 78 (89)
T 1wy8_A 29 KATIEELRERVWALFDVRPECQRLFY--RGKQLENGYTLFDYDVGLNDIIQL 78 (89)
T ss_dssp TCBHHHHHHHHHHHSCCCTTTEEEEE--TTEECCSSSBHHHHTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHHHCcChhhEEEEE--CCeECCCCCCHHHCCCCCCCEEEE
Confidence 4689999999999999986 556554 688776653332 2344444433
No 41
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=39.13 E-value=33 Score=23.33 Aligned_cols=46 Identities=9% Similarity=0.233 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhc--cCCCCceEee
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFS--TLEKNTSLMI 78 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~--tLp~nT~lm~ 78 (188)
.+..+|+.+.+++.++|. ..+|. ..|...+|+.-+. .+.++..+.+
T Consensus 25 ~TV~~LK~~I~~~~gip~~~qrL~--~~Gk~L~D~~tL~~~~I~~g~~i~l 73 (88)
T 2hj8_A 25 QTVAHLKQQVSGLEGVQDDLFWLT--FEGKPLEDQLPLGEYGLKPLSTVFM 73 (88)
T ss_dssp SBHHHHHHHHHHHTCSCTTTEEEE--SSSSCCCTTSBHHHHHCSTTCEEEE
T ss_pred CcHHHHHHHHHHHhCCChhHEEEE--ECCEECCCCCcHHHcCCCCCCEEEE
Confidence 679999999999999986 45554 4687776653222 2334444433
No 42
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=37.31 E-value=70 Score=24.01 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=52.5
Q ss_pred CCCceeEecCCCceEeEE-e--eCCHHHHHHHHHHHhCCCCceEEEEccCCcEEe---chhhhccCC-----CCceEeee
Q psy12005 11 IGLPCKVVDSNREKKIGI-V--ALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVD---EEEYFSTLE-----KNTSLMIL 79 (188)
Q Consensus 11 ~~KPfKV~~~~R~~kkGV-~--A~SL~EL~~Ka~~~l~l~~~~~LvLeeDGT~Vd---dEeYF~tLp-----~nT~lm~L 79 (188)
.+=++||.=.....++.| - ..+++||-...+..|+++....=+.+|||-+|- ++||.-.|- +|..-|..
T Consensus 13 ~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~~~IkY~DEenD~V~i~Sq~E~eEAlkva~k~~n~L~m~V 92 (101)
T 1wj6_A 13 PQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEALKMAVKQGNQLQMQV 92 (101)
T ss_dssp SCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSSBCCEEECTTSCEECCCSHHHHHHHHHHHHHHTSEEEEEC
T ss_pred ccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCEEEEecHHHHHHHHHHhccCCCEEEEEE
Confidence 345678888888888888 4 689999999999999998755557889997774 567776552 55555554
Q ss_pred cC
Q psy12005 80 SK 81 (188)
Q Consensus 80 ~~ 81 (188)
.+
T Consensus 93 ~~ 94 (101)
T 1wj6_A 93 HE 94 (101)
T ss_dssp CB
T ss_pred ee
Confidence 43
No 43
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=37.24 E-value=32 Score=28.26 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=30.3
Q ss_pred eeCCHHHHHHHHHHHhCCCCceEEEEccCCcEEechhhhccCCCCceEeee
Q psy12005 29 VALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKNTSLMIL 79 (188)
Q Consensus 29 ~A~SL~EL~~Ka~~~l~l~~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L 79 (188)
.-.||++|+.+..+. .-.++|.|||+-+..-++ +.|..|++=
T Consensus 110 ~~~sle~ll~e~~~~-----~~v~~L~E~G~~i~~~~~----~~~~~fvlG 151 (197)
T 2qmm_A 110 SRKGLEELIEELSEK-----YSIIYLKEDGVDISNAQL----PPNPLFVIG 151 (197)
T ss_dssp ECCCHHHHHHHHHHH-----SEEEEEEEEEEEGGGSCC----CSSEEEEEE
T ss_pred ECCCHHHHHHHhhcC-----CcEEEEcCCCCCCchhhc----CCCCEEEEe
Confidence 456899998885432 237789999999966664 567777764
No 44
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=36.85 E-value=84 Score=22.94 Aligned_cols=46 Identities=17% Similarity=0.385 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEech----hhhccCCCCceEeeec
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEE----EYFSTLEKNTSLMILS 80 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddE----eYF~tLp~nT~lm~L~ 80 (188)
.+..+|+++..+++++|. -.+|. .-|.+.+|+ +| .+.++..+|++.
T Consensus 40 ~TV~~lK~kI~~k~gip~~qQrLI--~~GKiL~D~~TL~~y--~I~~gsti~vl~ 90 (100)
T 1wju_A 40 ITGRELRSKIAETFGLQENYIKIV--INKKQLQLGKTLEEQ--GVAHNVKAMVLE 90 (100)
T ss_dssp SBHHHHHHHHHHHTTCCSTTCEEE--ETTEECCTTSBHHHH--TCCSSEEEEEEC
T ss_pred CHHHHHHHHHHHHHCcCHHHeEEE--eCCeECCCCCcHHHc--CCCCCCEEEEEE
Confidence 478999999999999986 55664 336555544 33 466777667764
No 45
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=36.75 E-value=77 Score=21.43 Aligned_cols=33 Identities=15% Similarity=0.391 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechh
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEE 65 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEe 65 (188)
.+..+|+.+.+++.++|. ..+|+ ..|...+|+.
T Consensus 21 ~TV~~LK~~I~~~~gip~~~qrLi--~~Gk~L~D~~ 54 (88)
T 4fbj_B 21 DKVERIKERVEEKEGIPPQQQRLI--YSGKQMNDEK 54 (88)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCEEE--ETTEECCTTS
T ss_pred CCHHHHHHHHHHHHCcChhHEEEE--ECCeECCCCC
Confidence 478999999999999986 55665 4688776653
No 46
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=36.54 E-value=39 Score=24.03 Aligned_cols=51 Identities=10% Similarity=0.274 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhcc--CCCC-ceEeeecCCC
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFST--LEKN-TSLMILSKND 83 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~t--Lp~n-T~lm~L~~ge 83 (188)
.+..+|+.+.+++.+++. ..+|+ ..|...+|+.-+.. +.++ |..+++++..
T Consensus 22 ~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 22 NTILETKTKLAQSISCEESQIKLI--YSGKVLQDSKTVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp SBHHHHHHHHHHTTTSCGGGCEEE--ETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred CcHHHHHHHHHHHHCCChhhEEEE--ECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence 478999999999999986 55655 46888876633222 3344 4555555444
No 47
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=36.42 E-value=52 Score=23.42 Aligned_cols=33 Identities=9% Similarity=0.355 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechh
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEE 65 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEe 65 (188)
.+..+|+.+.+++.+++. ..+|+ ..|...+|+.
T Consensus 56 ~TV~~LK~~I~~~~gip~~~qrLi--~~Gk~L~D~~ 89 (111)
T 2ojr_A 56 DTIENVKAKIQDKEGIPPDQQRLI--FAGKQLEDGR 89 (111)
T ss_dssp CBHHHHHHHHHHHHCCCTTTEEEE--ETTEECCSSC
T ss_pred CCHHHHHHHHHHHHCcCcccEEEE--ECCEECCCCC
Confidence 579999999999999986 55555 4688886654
No 48
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=35.92 E-value=53 Score=22.65 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhc--cCCCCceEee
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFS--TLEKNTSLMI 78 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~--tLp~nT~lm~ 78 (188)
.+..+|+++.+++.+++. ..+|.. .|...+|+.-+. .+.++..+.+
T Consensus 38 ~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L~D~~tL~~y~I~~gstI~l 86 (93)
T 2l7r_A 38 ETVAQIKAHVASLEGIAPEDQVVLL--AGAPLEDEATLGQCGVEALTTLEV 86 (93)
T ss_dssp CBHHHHHHHHHHHHTCCGGGCEEEE--TTEECCTTSBHHHHTCCSSCEEEE
T ss_pred CcHHHHHHHHHHHhCcChhHEEEEE--CCEECCCCCcHHHCCCCCCCEEEE
Confidence 579999999999999986 556654 587776653222 2345554443
No 49
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=35.80 E-value=37 Score=23.60 Aligned_cols=46 Identities=13% Similarity=0.399 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhcc--CCCCceEee
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFST--LEKNTSLMI 78 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~ 78 (188)
.+..+|+.+.+++.+++. ..+|+ ..|...+|+.-+.. +.++..+.+
T Consensus 43 ~TV~~LK~~I~~~~gip~~~qrLi--~~Gk~L~D~~tL~~~~i~~g~~i~l 91 (98)
T 4hcn_B 43 DTIDNVKSKIQDKEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL 91 (98)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCEEE--ETTEECCTTCBSGGGTCCTTEEEEE
T ss_pred CcHHHHHHHHHHHhCCChhHEEEE--ECCEECCCCCcHHHCCCCCCCEEEE
Confidence 378999999999999986 55555 47888766543322 334444443
No 50
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=33.47 E-value=66 Score=24.43 Aligned_cols=71 Identities=8% Similarity=0.033 Sum_probs=44.5
Q ss_pred eEecCCCceEeEEe-eCCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhcc---CC-------CCceEeeecCCC
Q psy12005 16 KVVDSNREKKIGIV-ALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFST---LE-------KNTSLMILSKND 83 (188)
Q Consensus 16 KV~~~~R~~kkGV~-A~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~t---Lp-------~nT~lm~L~~ge 83 (188)
+|+.+..+.-.-|- ..+..+|++|..++.+++. .-+|. .+|...+|+.=... =. +-|.-++|+.|.
T Consensus 6 ~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI--~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr~~~ 83 (118)
T 4ajy_B 6 MIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY--KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD 83 (118)
T ss_dssp EEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEECCSS
T ss_pred EEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEE--eCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEecCC
Confidence 45555433332332 3579999999999999986 44554 56766655421111 11 557888899888
Q ss_pred eeccC
Q psy12005 84 KWTPR 88 (188)
Q Consensus 84 ~W~p~ 88 (188)
.|-+-
T Consensus 84 ~fE~l 88 (118)
T 4ajy_B 84 TFEAL 88 (118)
T ss_dssp CCCCC
T ss_pred Cccce
Confidence 77653
No 51
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=33.39 E-value=1.1e+02 Score=20.87 Aligned_cols=47 Identities=9% Similarity=0.273 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHh---CCCC-ceEEEEccCCcEEechhhhcc--CCCCceEeee
Q psy12005 31 LSLKDLMNRARLKL---GMSS-VVKVVLDLDGTEVDEEEYFST--LEKNTSLMIL 79 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l---~l~~-~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~L 79 (188)
.+..+|+.+..+.+ +++. ..+|. ..|...+|+.-+.. +.++..+++.
T Consensus 21 ~TV~~LK~~I~~~~~~~gip~~~qrLi--~~Gk~L~D~~tL~~ygI~~g~~i~l~ 73 (95)
T 1uel_A 21 ETVKALKEKIESEKGKDAFPVAGQKLI--YAGKILNDDTALKEYKIDEKNFVVVM 73 (95)
T ss_dssp SBHHHHHHHHHHHHCTTTCCTTTEEEE--ETTEECCTTSBGGGGTCCSSSEEEEE
T ss_pred CHHHHHHHHHHhhcccCCCChhhEEEE--ECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 57899999999984 6775 55554 46888876633332 3355555443
No 52
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=32.27 E-value=77 Score=22.00 Aligned_cols=46 Identities=7% Similarity=0.253 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEech-hhhc--cCCCCceEee
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEE-EYFS--TLEKNTSLMI 78 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddE-eYF~--tLp~nT~lm~ 78 (188)
.+..+|+.+..++.++|. ..+|. ..|...+|+ .-+. .+.++..+.+
T Consensus 35 ~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D~~~tL~~ygI~~gstl~l 84 (94)
T 2kan_A 35 ETVSSLKDKIHIVENTPIKRMQLY--YSGIELADDYRNLNEYGITEFSEIVV 84 (94)
T ss_dssp CBHHHHHHHHHHHSSSCTTTEEEE--ETTEEECCTTSBHHHHTCCTTEEEEE
T ss_pred CcHHHHHHHHHHHHCcCHHHEEEE--ECCEECCCCcccHHHCCCCCCCEEEE
Confidence 578999999999999985 45554 468888666 2222 2445555444
No 53
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=32.13 E-value=36 Score=24.79 Aligned_cols=41 Identities=22% Similarity=0.398 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHhCCCCceEEEEccCCcEEechhhhccCC
Q psy12005 31 LSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLE 71 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~~~~LvLeeDGT~VddEeYF~tLp 71 (188)
..+.+|+..=|.+-+|+..-+|-|.-||..++-+.+++-++
T Consensus 30 t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~Dle 70 (82)
T 3goe_A 30 FTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTE 70 (82)
T ss_dssp SBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSS
T ss_pred CCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhC
Confidence 35889999999999999654666668999998888877654
No 54
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=32.10 E-value=78 Score=22.81 Aligned_cols=33 Identities=9% Similarity=0.333 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechh
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEE 65 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEe 65 (188)
.+..+|+++.+++.++|. ..+|. ..|...+|+.
T Consensus 30 ~TV~~LK~~I~~~~gip~~~qrLi--~~Gk~L~D~~ 63 (114)
T 2kdi_A 30 DTIDNVKSKIQDKEGIPPDQQRLI--WAGKQLEDGR 63 (114)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCTTC
T ss_pred CcHHHHHHHHHHHHCcChHHEEEE--ECCEECCCCC
Confidence 579999999999999986 55555 4588876653
No 55
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=31.41 E-value=96 Score=20.22 Aligned_cols=46 Identities=9% Similarity=0.192 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHH---hCCCC-ceEEEEccCCcEEechhhhcc--CCCCceEee
Q psy12005 31 LSLKDLMNRARLK---LGMSS-VVKVVLDLDGTEVDEEEYFST--LEKNTSLMI 78 (188)
Q Consensus 31 ~SL~EL~~Ka~~~---l~l~~-~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~ 78 (188)
.+..+|+++..+. -+++. ..+|. ..|...+|+.-+.. +.++..+++
T Consensus 26 ~TV~~lK~~i~~~~~~~gip~~~qrLi--~~Gk~L~D~~tL~~~~i~~g~~i~l 77 (85)
T 2wyq_A 26 ETVKVLKEKIEAEKGRDAFPVAGQKLI--YAGKILSDDVPIRDYRIDEKNFVVV 77 (85)
T ss_dssp SBHHHHHHHHHHHHCTTTCCGGGEEEE--ETTEECCTTSBGGGGCCCTTSEEEE
T ss_pred CCHHHHHHHHHhhccccCCCHHHeEEE--ECCEECcCCCCHHHcCCCCCCEEEE
Confidence 5789999999998 46764 45554 46887766543332 234444444
No 56
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=31.25 E-value=1.2e+02 Score=20.40 Aligned_cols=48 Identities=19% Similarity=0.381 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechh-hhc--cCCCCceEeeec
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEE-YFS--TLEKNTSLMILS 80 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEe-YF~--tLp~nT~lm~L~ 80 (188)
.+..+|+++..++.+++. .-+|. ..|...+|++ -+. .+.++..+++..
T Consensus 32 ~TV~~LK~~i~~~~gip~~~qrL~--~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 32 PVVQDLAQVVEEVIGVPQSFQKLI--FKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp CBHHHHHHHHHHHTCCCTTTCEEE--ETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CcHHHHHHHHHHHHCcCHHHEEEE--ECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 788999999999999986 55555 3577776633 122 245666666553
No 57
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=30.75 E-value=84 Score=22.58 Aligned_cols=48 Identities=15% Similarity=0.436 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhcc--CCCCceE-eeec
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFST--LEKNTSL-MILS 80 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~t--Lp~nT~l-m~L~ 80 (188)
.+..+|+++.+++.++|. ..+|. ..|...+|+.-+.. +.++..+ ++.+
T Consensus 21 ~tv~~lK~~i~~~~gip~~~q~L~--~~g~~L~d~~tL~~~~i~~~~~l~l~~~ 72 (152)
T 3b08_A 21 DTIENVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCcChHHeEEE--ECCeECcCcccHHHhccCCCCeeEEEee
Confidence 579999999999999986 44554 35887766533332 3344444 4443
No 58
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=29.51 E-value=1.2e+02 Score=21.46 Aligned_cols=39 Identities=8% Similarity=0.135 Sum_probs=26.9
Q ss_pred eeEecCCCceEeEEe--eCCHHHHHHHHHHHhCCCC-ceEEE
Q psy12005 15 CKVVDSNREKKIGIV--ALSLKDLMNRARLKLGMSS-VVKVV 53 (188)
Q Consensus 15 fKV~~~~R~~kkGV~--A~SL~EL~~Ka~~~l~l~~-~~~Lv 53 (188)
.||++.+...+.-|- ..++.+|++|..++++++. .-+|.
T Consensus 10 irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~ 51 (107)
T 1wf9_A 10 LRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLS 51 (107)
T ss_dssp EEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCB
T ss_pred EEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEE
Confidence 566666554443333 2489999999999999986 54553
No 59
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=28.96 E-value=1.2e+02 Score=20.44 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHhCCCCceEEEEccCCcEEech
Q psy12005 31 LSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEE 64 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~~~~LvLeeDGT~VddE 64 (188)
..++.|+++-|++.+++. ..+.+--||..+.++
T Consensus 29 t~l~kl~~~y~~~~gi~~-~~~rf~fdG~~l~~~ 61 (79)
T 3a4r_A 29 SPLKVLMSHYEEAMGLSG-HKLSFFFDGTKLSGK 61 (79)
T ss_dssp SCHHHHHHHHHHHHTCTT-CCCEEEETTEECCSC
T ss_pred ChHHHHHHHHHHHhCCCc-ccEEEEECCEEcCCC
Confidence 579999999999999985 244444689988544
No 60
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=28.83 E-value=92 Score=22.19 Aligned_cols=33 Identities=9% Similarity=0.355 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechh
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEE 65 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEe 65 (188)
.+..+|+.+.+++.++|. ..+|+ ..|...+|+.
T Consensus 56 ~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D~~ 89 (111)
T 3vdz_A 56 DTIENVKAKIQDKEGIPPDQQRLI--FAGKQLEDGR 89 (111)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCTTS
T ss_pred CCHHHHHHHHHHHhCCChHHEEEE--ECCEECCCCC
Confidence 478999999999999986 45554 5788876654
No 61
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=28.44 E-value=1.2e+02 Score=21.36 Aligned_cols=47 Identities=6% Similarity=0.239 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhcc--CCCCceEeee
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFST--LEKNTSLMIL 79 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~L 79 (188)
.+..+|+++.+++.+++. ..+|+. .|...+|+.-+.. +.++.++.+.
T Consensus 48 ~TV~~LK~~I~~~~gip~~~QrLi~--~Gk~L~D~~tL~~~gI~~g~tI~lv 97 (101)
T 3m63_B 48 STVLQFKEAINKANGIPVANQRLIY--SGKILKDDQTVESYHIQDGHSVHLV 97 (101)
T ss_dssp SBHHHHHHHHHHHHSCCSTTCCEEE--TTEECCTTSBTTTTTCCTTEEEEEC
T ss_pred CCHHHHHHHHHHHHCcChHHEEEEE--CCEECCCcCcHHHCCCCCCCEEEEE
Confidence 478999999999999986 556653 6877766532222 3445444443
No 62
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=27.21 E-value=1.3e+02 Score=21.17 Aligned_cols=48 Identities=13% Similarity=0.288 Sum_probs=31.5
Q ss_pred eCCHHHHHHHHHHHh--CCCC-c-eEEEEccCCcEEechhhhc--cCCCCceEeee
Q psy12005 30 ALSLKDLMNRARLKL--GMSS-V-VKVVLDLDGTEVDEEEYFS--TLEKNTSLMIL 79 (188)
Q Consensus 30 A~SL~EL~~Ka~~~l--~l~~-~-~~LvLeeDGT~VddEeYF~--tLp~nT~lm~L 79 (188)
-.+..+|+++.+++. +++. . .+|. ..|...+|+.-.. .+.++..+.+.
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi--~~Gk~L~D~~tL~~y~i~~g~~i~lv 97 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLI--YCGRKLKDDQTLDFYGIQPGSTVHVL 97 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEE--ETTEECCTTCBHHHHTCCTTCEEEEE
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEE--ECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 368999999999999 9986 4 4554 5687776653222 23455544443
No 63
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=27.21 E-value=1.9e+02 Score=21.26 Aligned_cols=50 Identities=14% Similarity=0.279 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechh---hhccCCCCceEeeec
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEE---YFSTLEKNTSLMILS 80 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEe---YF~tLp~nT~lm~L~ 80 (188)
.+..+|+.+..++.++|. .-+|++++.|...+|+. .+.--+..|..++++
T Consensus 23 ~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 23 MSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred CcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 578999999999999986 56666544577776552 222223444445554
No 64
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=26.26 E-value=51 Score=22.93 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHhCCCCceEEEEccCCcEEech
Q psy12005 31 LSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEE 64 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~~~~LvLeeDGT~VddE 64 (188)
.++.+|+++.+++.+++. ....|-.+|..++++
T Consensus 42 ~tv~~lK~~i~~~~gip~-~~qrLif~Gk~L~d~ 74 (97)
T 1wyw_B 42 THLKKLKESYCQRQGVPM-NSLRFLFEGQRIADN 74 (97)
T ss_dssp SCTHHHHHHHHHHHTCCG-GGEEEEETTEECCTT
T ss_pred CcHHHHHHHHHHHHCCCh-hhEEEEECCeEcCCC
Confidence 579999999999999985 334444689888766
No 65
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=26.10 E-value=1.1e+02 Score=21.48 Aligned_cols=47 Identities=11% Similarity=0.235 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhcc--CCCCceEeee
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFST--LEKNTSLMIL 79 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~L 79 (188)
.+..+|+.+.+++.+++. ..+|.. .|...+|+.-+.. +.++..+.+.
T Consensus 44 ~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L~D~~tL~~ygI~~g~ti~lv 93 (106)
T 1ttn_A 44 DTVFHMKRRLHAAEGVEPGSQRWFF--SGRPLTDKMKFEELKIPKDYVVQVI 93 (106)
T ss_dssp SHHHHHHHHHHHTTCCCSTTCEEEE--TTEECCTTSHHHHCCCSSSCEEEEE
T ss_pred CcHHHHHHHHHHHHCcCcccEEEEE--CCEECCCCCcHHHcCCCCCCEEEEE
Confidence 468999999999999986 566654 6888876643332 3344444443
No 66
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=25.99 E-value=1.6e+02 Score=20.68 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=24.5
Q ss_pred eCCHHHHHHHHHHHhCCCC-ceEEEEccCCc
Q psy12005 30 ALSLKDLMNRARLKLGMSS-VVKVVLDLDGT 59 (188)
Q Consensus 30 A~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT 59 (188)
..+..+|+.|..++.++|. .-+|.+..+|.
T Consensus 37 ~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~ 67 (95)
T 2kjr_A 37 DLTVAQLKTKLEILTGGCAGTMKVQVFKGDT 67 (95)
T ss_dssp TCBHHHHHHHHHHHHCSCTTTEEEEEEETTE
T ss_pred cCHHHHHHHHHHHHHCcCHHHeEEEEecCCc
Confidence 3689999999999999997 77777755555
No 67
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.19 E-value=51 Score=23.11 Aligned_cols=51 Identities=10% Similarity=0.231 Sum_probs=34.5
Q ss_pred eCCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhcc--CCCCceEeeecCCC
Q psy12005 30 ALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFST--LEKNTSLMILSKND 83 (188)
Q Consensus 30 A~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~L~~ge 83 (188)
-.+..+|+++..++.+++. .-+|. ..|...+|+ -+.. +.++..++++..-+
T Consensus 27 ~~TV~~lK~~I~~~tgip~~~QkLi--~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 27 DEPPMVFKAQLFALTGVQPARQKVM--VKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp SSCHHHHHHHHHHHTCCCTTTSCCE--ETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred CCcHHHHHHHHHHHHCcCHHHeEEE--ECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 3689999999999999986 44444 478887665 3333 33566666654433
No 68
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=24.17 E-value=1.3e+02 Score=21.53 Aligned_cols=46 Identities=13% Similarity=0.395 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhcc--CCCCceEee
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFST--LEKNTSLMI 78 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~ 78 (188)
.+..+|+.+.+++.++|. ..+|. ..|...+|+.-+.. +.++..+.+
T Consensus 97 ~tv~~lK~~i~~~~gi~~~~qrL~--~~g~~L~d~~tL~~~~i~~~~~i~l 145 (152)
T 3b08_A 97 DTIENVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL 145 (152)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred CcHHHHHHHHHHHhCcChhhEEEE--ECCEECCCCCCHHHcCCCCCCEEEE
Confidence 578999999999999985 55554 46887766543332 234444433
No 69
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=23.14 E-value=1.2e+02 Score=22.80 Aligned_cols=48 Identities=13% Similarity=0.360 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhcc--C-CCCceEeeec
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFST--L-EKNTSLMILS 80 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~t--L-p~nT~lm~L~ 80 (188)
.+..+|+.|.+++.+++. .-+|+ ..|...+|+.-+.. + +..|..++++
T Consensus 41 ~tV~~lK~~I~~~~gip~~~QrL~--~~g~~L~d~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 41 DTIENVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CcHHHHHHHHHHHHCcChHHEEEE--ECCccccccCCHhHcCCcccceeeeeec
Confidence 478999999999999986 44555 46877766543332 2 3444555544
No 70
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=22.78 E-value=44 Score=22.99 Aligned_cols=41 Identities=12% Similarity=0.252 Sum_probs=30.4
Q ss_pred eeEecCCCceEeEEee-CCHHHHHHHHHHHhCCCC-ceEEEEc
Q psy12005 15 CKVVDSNREKKIGIVA-LSLKDLMNRARLKLGMSS-VVKVVLD 55 (188)
Q Consensus 15 fKV~~~~R~~kkGV~A-~SL~EL~~Ka~~~l~l~~-~~~LvLe 55 (188)
.||+..+...|.-|-+ .++.+|++|..+.++++. ..+|.+.
T Consensus 7 lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~ 49 (80)
T 2pjh_A 7 IRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYIN 49 (80)
T ss_dssp CEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCS
T ss_pred EEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEec
Confidence 4677777667766655 789999999999999985 4455543
No 71
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding protein; HET: PLM; 2.50A {Bacillus subtilis}
Probab=22.65 E-value=8.5 Score=33.32 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=39.2
Q ss_pred CCceeEecCCCceEeEEeeCCHHHHHHHHHHHhCCCC-ceEEEEcc----CCcEEechhhhccCCC
Q psy12005 12 GLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDL----DGTEVDEEEYFSTLEK 72 (188)
Q Consensus 12 ~KPfKV~~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~-~~~LvLee----DGT~VddEeYF~tLp~ 72 (188)
.-.||.--... -|..|+.+|--+|-..-.++++|.. |..+.++. ||..++.++||..+..
T Consensus 24 ~~~~~~~~~~~-Mki~IvTDSt~dL~~e~~~~~~I~vvPL~v~~~~~~Y~D~~di~~~efy~~m~~ 88 (315)
T 3fys_A 24 MTGGQQMGRGS-MNIAVVTDSTAYIPKEMREQHQIHMIPLQVVFREETYREEIELDWKSFYEEVKK 88 (315)
T ss_dssp ----------C-CCEEEEEEGGGCCCHHHHHHHTEEEECCEEECSSCEEEBTTTBCHHHHHHHHHT
T ss_pred ccchhhhCcCC-CcEEEEEECCCCCCHHHHHhCCeEEEeEEEEECCEEEECCCCCCHHHHHHHHHh
Confidence 34454443332 3789999999888877777888876 88887753 7777778899988864
No 72
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=22.25 E-value=81 Score=26.16 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=27.2
Q ss_pred eeCCHHHHHHHHHHHhCCCCceEEEEccCCcEEechhhhccCCCCceEeee
Q psy12005 29 VALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKNTSLMIL 79 (188)
Q Consensus 29 ~A~SL~EL~~Ka~~~l~l~~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L 79 (188)
.-.||++|+.+..+. ..-.++|.|||+-+.+-++ .|..|++=
T Consensus 121 ~~~sle~ll~e~~~~----~~~v~~L~E~G~~i~~~~~-----~~~~fvlG 162 (211)
T 3aia_A 121 RRLGFRNLVLEKLEE----GKNIYYLHMNGEDVENVDI-----ENPVFIIG 162 (211)
T ss_dssp ECCCHHHHHHHHHHT----TCEEEEEEEEEEEGGGCCC-----CSEEEEEE
T ss_pred EcCCHHHHHHHHhhc----CCcEEEEcCCCCCCccccc-----CCcEEEEE
Confidence 345777777764331 1136788899998866654 67777764
No 73
>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}
Probab=22.19 E-value=24 Score=25.95 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=14.0
Q ss_pred EEEEccCCcEEechhhh
Q psy12005 51 KVVLDLDGTEVDEEEYF 67 (188)
Q Consensus 51 ~LvLeeDGT~VddEeYF 67 (188)
.++.+-|||++|++..+
T Consensus 6 ~viFD~DGtL~Ds~~~~ 22 (180)
T 3bwv_A 6 RIAIDMDEVLADTLGAV 22 (180)
T ss_dssp EEEEETBTTTBCHHHHH
T ss_pred EEEEeCCCcccccHHHH
Confidence 46789999999998753
No 74
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=27.42 E-value=19 Score=23.30 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHhCCCCceEEEEccCCcEEech
Q psy12005 31 LSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEE 64 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~~~~LvLeeDGT~VddE 64 (188)
.+..+|+++.++..++|. ....|-..|...+|+
T Consensus 21 ~tV~~lK~~i~~~~gi~~-~~qrL~~~gk~L~d~ 53 (76)
T 3b1l_X 21 TSILQLKEVVAKQQGVPA-DQLRVIFAGKELPNH 53 (76)
Confidence 578899999999999985 333333568777554
No 75
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.59 E-value=72 Score=21.71 Aligned_cols=46 Identities=7% Similarity=0.233 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhc--cCCCCceEee
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFS--TLEKNTSLMI 78 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~--tLp~nT~lm~ 78 (188)
.+..+|+++.+++.+++. ..+|.. .|...+|+.-+. .+.++..+.+
T Consensus 37 ~TV~~LK~~I~~~~gip~~~qrL~~--~Gk~L~D~~tL~~~gi~~g~~i~l 85 (96)
T 1wx8_A 37 SNVRRFKKQISKYLHCNADRLVLIF--TGKILRDQDILSQRGILDGSTVHV 85 (96)
T ss_dssp CCHHHHHHHHHHHTCSCTTTBCCEE--TTEECCTTSCHHHHTCCTTEEEEC
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEE--CCEECCCcCCHHHCCCCCCCEEEE
Confidence 579999999999999986 555553 577776653222 2345554443
No 76
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=21.42 E-value=1.2e+02 Score=23.21 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=42.5
Q ss_pred ccccccCCCCCceeEecCCCceEeEEeeCC--HHHHHHHHHHHhCCCC--ceEEEEc
Q psy12005 3 YGLLEEDGIGLPCKVVDSNREKKIGIVALS--LKDLMNRARLKLGMSS--VVKVVLD 55 (188)
Q Consensus 3 ~~~~~e~~~~KPfKV~~~~R~~kkGV~A~S--L~EL~~Ka~~~l~l~~--~~~LvLe 55 (188)
-|.|+-.++.||-||+=.|.+.+.=.+-.| .-++..-.|.++||+. ...|+-+
T Consensus 2 ~~~l~f~~k~r~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~ 58 (128)
T 2kc2_A 2 SGLVPRGSHMRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRE 58 (128)
T ss_dssp CCCCSCSSEEEEEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEE
T ss_pred CceeEeccCCccEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccccccccc
Confidence 477888888899999999988887766654 5699999999999985 4556543
No 77
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.28 E-value=65 Score=24.61 Aligned_cols=66 Identities=18% Similarity=0.152 Sum_probs=45.7
Q ss_pred ceeEe-cCCCceEeEEe---eCCHHHHHHHHHHHhCCCCceEEEEccCCcEEechhhhccC---CCCceEeeecC
Q psy12005 14 PCKVV-DSNREKKIGIV---ALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTL---EKNTSLMILSK 81 (188)
Q Consensus 14 PfKV~-~~~R~~kkGV~---A~SL~EL~~Ka~~~l~l~~~~~LvLeeDGT~VddEeYF~tL---p~nT~lm~L~~ 81 (188)
-|||. ... ..++=|. ..+..||+++....+++|. -.++|=..|.++.|++=+... +.+|.-|+.+.
T Consensus 17 tvkv~l~~~-~~k~tv~v~~d~TV~dLKe~ls~~~~iP~-e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 17 TVKVVLIPV-GQEIVIPFKVDTILKYLKDHFSHLLGIPH-SVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp EEEEEETTT-CCEEEEEECSSSCSHHHHHHHHHHHTCCT-TTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred EEEEEEcCC-CcEEEEEeCCCCcHHHHHHHHHhhhCCCh-HHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 36654 332 3455553 4588999999999999984 556666789999988855544 56777777644
No 78
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=21.27 E-value=1e+02 Score=23.44 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=24.7
Q ss_pred eCCHHHHHHHHHHHh-CCCC-ceEEE-EccCCcEE
Q psy12005 30 ALSLKDLMNRARLKL-GMSS-VVKVV-LDLDGTEV 61 (188)
Q Consensus 30 A~SL~EL~~Ka~~~l-~l~~-~~~Lv-LeeDGT~V 61 (188)
+.|+++|+.|..+.| ++.. ++.|. .+|||-.|
T Consensus 56 ~~s~~~L~~kV~~lFp~L~~~~f~l~YkDEdGDlI 90 (117)
T 2ktr_A 56 PGPSERLLSRVAVLFPALRPGGFQAHYRAERGDLV 90 (117)
T ss_dssp CCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEE
T ss_pred CCCHHHHHHHHHHHccccCCCcEEEEEECCCCCEE
Confidence 579999999999999 5554 55554 34789877
No 79
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=21.15 E-value=39 Score=23.62 Aligned_cols=29 Identities=7% Similarity=-0.015 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhhhhhhhccchhhhhhHHH
Q psy12005 145 KLFLDQFKEVSSRYFSNKNHHSKETKSEK 173 (188)
Q Consensus 145 ~~~~~~lqet~~r~L~~r~e~rqs~~Ll~ 173 (188)
+.-.+.|.+++.+++.+++..++..++++
T Consensus 107 P~~~~~L~~~i~~~l~~~~~~~~~~~~~~ 135 (151)
T 3kcn_A 107 PCQMSDIKAAINAGIKQYDLVTSKEELLK 135 (151)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557788888888887776665555443
No 80
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=20.61 E-value=1.6e+02 Score=21.65 Aligned_cols=32 Identities=9% Similarity=0.273 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEech
Q psy12005 31 LSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEE 64 (188)
Q Consensus 31 ~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddE 64 (188)
.+..+|+++..++.++|. .-+|+ ..|.+.+|+
T Consensus 102 ~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~d~ 134 (159)
T 3rt3_B 102 QTVAHLKQQVSGLEGVQDDLFWLT--FEGKPLEDQ 134 (159)
T ss_dssp SBHHHHHHHHHHHHTCCGGGEEEE--ETTEECCTT
T ss_pred CCHHHHHHHHHHHHCCCHHHEEEE--ECCeecCCC
Confidence 578999999999999985 44444 578888765
No 81
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=20.51 E-value=2.8e+02 Score=20.91 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=39.3
Q ss_pred cCCCceEeEEeeCCHHHHHHHHHHHhCCCC--ceEEEEccCCcEEe-chhhhccCCCC------ceEeeecCC
Q psy12005 19 DSNREKKIGIVALSLKDLMNRARLKLGMSS--VVKVVLDLDGTEVD-EEEYFSTLEKN------TSLMILSKN 82 (188)
Q Consensus 19 ~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~--~~~LvLeeDGT~Vd-dEeYF~tLp~n------T~lm~L~~g 82 (188)
..+.+.|.==.-.++.+-+.||-+||++.. ...+|.-..|..+. ++|=|.++..| --|++..++
T Consensus 7 acnGQTRaVq~~~~y~~~L~~ALkKF~ledpskw~Vcvtqssr~~~it~e~f~~icr~~srPEReRLIl~~K~ 79 (110)
T 1k8r_B 7 ACNGQTRAVQSRGDYQKTLAIALKKFSLEDASKFIVCVSQSSRIKLITEEEFKQICFNSSSPERDRLIIVPKE 79 (110)
T ss_dssp CSTTCEEEEECCSCHHHHHHHHHHHHTCCCTTSEEEEEECSSSEEECCCC-------------CCCEEEEESS
T ss_pred ecCCceEEeeehhhHHHHHHHHHHHcCCCChhHeEEEEecCceEEEecHhHHHHHHhCCCCcchheeEEecCC
Confidence 334455555556788899999999999954 67788877788765 66667777544 345555444
No 82
>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*
Probab=20.02 E-value=29 Score=25.91 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=13.5
Q ss_pred EEEEccCCcEEechhhh
Q psy12005 51 KVVLDLDGTEVDEEEYF 67 (188)
Q Consensus 51 ~LvLeeDGT~VddEeYF 67 (188)
.++.+-|||++|++..+
T Consensus 4 ~viFDlDGTL~Ds~~~~ 20 (193)
T 2i7d_A 4 RVLVDMDGVLADFEAGL 20 (193)
T ss_dssp EEEECSBTTTBCHHHHH
T ss_pred EEEEECCCcCccchhHH
Confidence 46778999999987544
Done!