RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12005
         (188 letters)



>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B),
           N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score =  102 bits (257), Expect = 2e-29
 Identities = 27/77 (35%), Positives = 45/77 (58%)

Query: 14  PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKN 73
           P +V D  R  + G+ A + ++L+ +A   L ++ V+ +VL+ DGT VD E++F  LE +
Sbjct: 37  PFRVCDHKRTIRKGLTAATRQELLAKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDD 96

Query: 74  TSLMILSKNDKWTPRSE 90
           T LM+L     W+P   
Sbjct: 97  TCLMVLQSGQSWSPTRS 113


>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40,
          N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 87

 Score = 89.0 bits (221), Expect = 3e-24
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEK 72
            K+   +   K G+ A S ++L+ +  ++  +     ++ L  DGTEV  ++ F  L  
Sbjct: 10 CVKLRALHSACKFGVAARSCQELLRKGCVRFQLPMPGSRLCLYEDGTEVT-DDCFPGLPN 68

Query: 73 NTSLMILSKNDKWTP 87
          +  L++L+  + W  
Sbjct: 69 DAELLLLTAGETWHG 83


>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40,
          N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 81

 Score = 88.6 bits (220), Expect = 3e-24
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSV-VKVVLDLDGTEVDEEEYFSTLEK 72
            K+      +K G+   S ++++ +  L+  +     ++ L  DGTE+  E+YF ++  
Sbjct: 7  SVKLRALRSPRKFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTELT-EDYFPSVPD 65

Query: 73 NTSLMILSKNDKWTP 87
          N  L++L+    W  
Sbjct: 66 NAELVLLTLGQAWQG 80


>d1f2ri_ d.15.2.1 (I:) Inhibitor of caspase-activated DNase
          (ICAD), DFF45, N-terminal domain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 100

 Score = 89.1 bits (221), Expect = 4e-24
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSV---VKVVLDLDGTEVDEEEYFSTL 70
          PC +  ++   + G+ A SL++L ++A   L +      + +VL  DGT VD+++YF  L
Sbjct: 20 PCLLRRNHSRDQHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL 79

Query: 71 EKNTSLMILSKNDKWTPRS 89
            NT  + L+ N+KWT   
Sbjct: 80 PSNTKFVALACNEKWTYND 98


>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104
          {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 210

 Score = 28.7 bits (62), Expect = 0.38
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 46 MSSVVKVVLDLDGTEVDEEEYF 67
          M+S+  +  DLDGT VD     
Sbjct: 1  MTSITAIFFDLDGTLVDSSIGI 22


>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1,  Mdp1
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 164

 Score = 27.5 bits (60), Expect = 0.64
 Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 1/20 (5%)

Query: 46 MSSVVK-VVLDLDGTEVDEE 64
          M+ + K  V DLD T     
Sbjct: 1  MTRLPKLAVFDLDYTLWPFW 20


>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens)
          [TaxId: 9606]}
          Length = 253

 Score = 27.1 bits (58), Expect = 1.2
 Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 44 LGMSSVVKVVL-DLDGTEVDEEEYFSTL 70
          L + + V V+L D++GT          L
Sbjct: 1  LSVPAEVTVILLDIEGTTTPIAFVKDIL 28


>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 222

 Score = 26.0 bits (55), Expect = 2.6
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 52 VVLDLDGTEVDEEEYF 67
          ++ D DG  VD E   
Sbjct: 5  IIFDCDGVLVDSEIIA 20


>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase
          {Lactobacillus plantarum [TaxId: 1590]}
          Length = 207

 Score = 26.0 bits (55), Expect = 2.6
 Identities = 4/16 (25%), Positives = 10/16 (62%)

Query: 52 VVLDLDGTEVDEEEYF 67
          ++ D+DGT  + +  +
Sbjct: 6  LMFDIDGTLTNSQPAY 21


>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 247

 Score = 26.0 bits (55), Expect = 2.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 44 LGMSSVVKVVLDLDGTEVDEEEYF 67
          +G+S V  V  DLD T +D     
Sbjct: 1  MGLSRVRAVFFDLDNTLIDTAGAS 24


>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953
          {Synechocystis sp. pcc 6803 [TaxId: 1148]}
          Length = 244

 Score = 25.7 bits (55), Expect = 3.5
 Identities = 6/21 (28%), Positives = 13/21 (61%)

Query: 52 VVLDLDGTEVDEEEYFSTLEK 72
          ++ DLD T V +++    L++
Sbjct: 6  LISDLDNTWVGDQQALEHLQE 26


>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph
          {Haemophilus somnus [TaxId: 731]}
          Length = 224

 Score = 25.3 bits (53), Expect = 5.1
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 46 MSSVVKVVLDLDGTEVDEEEYF 67
          M+    +  DLDGT V+     
Sbjct: 1  MTQFKLIGFDLDGTLVNSLPDL 22


>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 653

 Score = 24.7 bits (53), Expect = 9.8
 Identities = 20/138 (14%), Positives = 49/138 (35%), Gaps = 9/138 (6%)

Query: 54  LDLDGTEVDEEEYFSTLEKNTSLMILSKNDKWTPRSETTATLTLERNETNNDVTGFLTKI 113
              +  +++  +Y   L +   L  +S  +K     + + +     N T + + G     
Sbjct: 468 FKENDYDINALKYVYKLREFMQLSNMSLQNK--SLEDGSDSAFKPSNLTLSGIYGLTEGK 525

Query: 114 HGNNGVSILGGLELELLSDMDPESLTDIIP------DKLFLDQFKEVSSRYFSNKNHHSK 167
                 S++ G++ +LL +     +T+++       +    +     S  Y   K     
Sbjct: 526 LQGGVGSLISGIK-KLLPEKKTIPITNVVDAIMDPLNSSQKNLETTDSYLYIDPKITRGS 584

Query: 168 ETKSEKILHHRYVILFAV 185
            T+  K   +   ++F V
Sbjct: 585 HTRKPKRQSYNKSLVFVV 602


>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon
          Methanococcus jannaschii [TaxId: 2190]}
          Length = 210

 Score = 24.4 bits (51), Expect = 9.8
 Identities = 5/13 (38%), Positives = 8/13 (61%)

Query: 52 VVLDLDGTEVDEE 64
          ++ D D T V+ E
Sbjct: 7  ILFDFDSTLVNNE 19


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.134    0.370 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 669,676
Number of extensions: 28842
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 27
Length of query: 188
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,309,196
Effective search space: 141393168
Effective search space used: 141393168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.4 bits)