BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12008
         (458 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9VUJ0|RM39_DROME 39S ribosomal protein L39, mitochondrial OS=Drosophila melanogaster
           GN=mRpL39 PE=1 SV=2
          Length = 333

 Score =  311 bits (796), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 143/246 (58%), Positives = 189/246 (76%), Gaps = 2/246 (0%)

Query: 175 SSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSE 234
           SS  + K+ND+FN+E +RQ++AVGRI+KI V Y GLPED  L+MN N+STP+NCAQH+SE
Sbjct: 30  SSASLAKRNDLFNQEQRRQRDAVGRIDKIEVRYLGLPEDVTLVMNGNISTPFNCAQHLSE 89

Query: 235 MLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSN 294
             C RS LALIDG   WDMHRPL+  C LQLL+F+ S+P+  N+ FWR+CS MLG+ L+ 
Sbjct: 90  GHCKRSALALIDGSVPWDMHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNR 149

Query: 295 AFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFE 354
           AFK    +QLHSFP PN+KSGSFV+D+ L    NW+P   E+R LSAEMVKLA + +  E
Sbjct: 150 AFKPEANLQLHSFPGPNIKSGSFVHDIVLQ-TQNWEPGKEEMRALSAEMVKLAAQDLRIE 208

Query: 355 RLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGR 414
           RL + QDLA+ +F+ +KYK EQ+PSI QQ+ +G+V +YR+ DHIDISRGPM+++T+ LG+
Sbjct: 209 RLDVQQDLAQEMFKDSKYKSEQLPSISQQT-NGRVTLYRLGDHIDISRGPMVASTSFLGK 267

Query: 415 CTIAAV 420
           C I+A 
Sbjct: 268 CVISAA 273



 Score =  149 bits (376), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 73/135 (54%), Positives = 101/135 (74%), Gaps = 4/135 (2%)

Query: 12  SLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHN 71
           ++KSGSFV+D+ L    NW+P   E+R LSAEMVKLA + +  ERL + QDLA+ +F+ +
Sbjct: 166 NIKSGSFVHDIVLQ-TQNWEPGKEEMRALSAEMVKLAAQDLRIERLDVQQDLAQEMFKDS 224

Query: 72  KYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQV--ETDAG 129
           KYK EQ+PSI QQ+ +G+V +YR+ DHIDISRGPM+++T+ LG+C I+AA +V  E  +G
Sbjct: 225 KYKSEQLPSISQQT-NGRVTLYRLGDHIDISRGPMVASTSFLGKCVISAAHKVAEEGPSG 283

Query: 130 LFYRFQGVALPKSIK 144
            FYR QGVALP   +
Sbjct: 284 AFYRIQGVALPSGFQ 298


>sp|Q9NYK5|RM39_HUMAN 39S ribosomal protein L39, mitochondrial OS=Homo sapiens GN=MRPL39
           PE=1 SV=3
          Length = 338

 Score =  204 bits (519), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 102/247 (41%), Positives = 153/247 (61%), Gaps = 3/247 (1%)

Query: 176 SNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAEL-IMNKNLSTPYNCAQHMSE 234
           + + + +ND+FNKE  RQ +   R EKI V + G  +   + +MNKN+STPY+CA H+SE
Sbjct: 38  TELTEMRNDLFNKEKARQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSE 97

Query: 235 MLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSN 294
             C +S+LAL+DG + WDM++PL   CE++ L F D DP   N+ +WRSC++M+G V+  
Sbjct: 98  WYCRKSILALVDG-QPWDMYKPLTKSCEIKFLTFKDCDPGEVNKAYWRSCAMMMGCVIER 156

Query: 295 AFKDNVEVQLHSFPSPNVKSGSFVYDVQL-SGVDNWKPTSAELRVLSAEMVKLAYEAVPF 353
           AFKD   V L   P   V SG+F YDV L S +D W PT   LR  + +   L Y+ +PF
Sbjct: 157 AFKDEYMVNLVRAPEVPVISGAFCYDVVLDSKLDEWMPTKENLRSFTKDAHALIYKDLPF 216

Query: 354 ERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLG 413
           E L +   +A  +F+H+KYK++ I     Q+ +  V ++RI D ID+S GP++  T+   
Sbjct: 217 ETLEVEAKVALEIFQHSKYKVDFIEEKASQNPERIVKLHRIGDFIDVSEGPLIPRTSICF 276

Query: 414 RCTIAAV 420
           +  ++AV
Sbjct: 277 QYEVSAV 283



 Score = 92.4 bits (228), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 3/149 (2%)

Query: 5   NDVRG-KVSLKSGSFVYDVQL-SGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQD 62
           N VR  +V + SG+F YDV L S +D W PT   LR  + +   L Y+ +PFE L +   
Sbjct: 165 NLVRAPEVPVISGAFCYDVVLDSKLDEWMPTKENLRSFTKDAHALIYKDLPFETLEVEAK 224

Query: 63  LAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQ 122
           +A  +F+H+KYK++ I     Q+ +  V ++RI D ID+S GP++  T+   +  ++A  
Sbjct: 225 VALEIFQHSKYKVDFIEEKASQNPERIVKLHRIGDFIDVSEGPLIPRTSICFQYEVSAVH 284

Query: 123 QVE-TDAGLFYRFQGVALPKSIKGFIPSW 150
            ++ T   L  RFQGV+LP  ++     W
Sbjct: 285 NLQPTQPSLIRRFQGVSLPVHLRAHFTIW 313


>sp|Q9JKF7|RM39_MOUSE 39S ribosomal protein L39, mitochondrial OS=Mus musculus GN=Mrpl39
           PE=2 SV=4
          Length = 336

 Score =  204 bits (519), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/247 (40%), Positives = 152/247 (61%), Gaps = 3/247 (1%)

Query: 176 SNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAEL-IMNKNLSTPYNCAQHMSE 234
           + + + +ND+FN+E  RQ +   R EKI V + G  +   + +MNKN+STPY+CA H+SE
Sbjct: 35  TELTEMRNDLFNREKSRQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSE 94

Query: 235 MLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSN 294
             C +S+LAL+DG + WDM++PL   CE++ L F D DP   N+ +WRSC++MLG V+  
Sbjct: 95  WYCSKSILALVDG-QPWDMYKPLTKSCEIKFLTFKDPDPKEVNKAYWRSCAMMLGCVIER 153

Query: 295 AFKDNVEVQLHSFPSPNVKSGSFVYDVQLSG-VDNWKPTSAELRVLSAEMVKLAYEAVPF 353
           AFKD+  V L   P   V +G+F YDV L   +D W PT   LR  + +   L Y  +PF
Sbjct: 154 AFKDDYVVSLVRAPEVPVIAGAFCYDVTLDKRLDEWMPTKENLRSFTKDAHALIYRDLPF 213

Query: 354 ERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLG 413
           E L +   +A  +F+HNKYK++ I     Q+ +  V ++RI D ID+S GP++  T+   
Sbjct: 214 ETLDVDARVALEIFQHNKYKVDFIEEKASQNPERIVKLHRIGDFIDVSEGPLIPRTSVCF 273

Query: 414 RCTIAAV 420
           +  ++AV
Sbjct: 274 QYEVSAV 280



 Score = 88.6 bits (218), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 8/156 (5%)

Query: 3   FKND-----VRG-KVSLKSGSFVYDVQLSG-VDNWKPTSAELRVLSAEMVKLAYEAVPFE 55
           FK+D     VR  +V + +G+F YDV L   +D W PT   LR  + +   L Y  +PFE
Sbjct: 155 FKDDYVVSLVRAPEVPVIAGAFCYDVTLDKRLDEWMPTKENLRSFTKDAHALIYRDLPFE 214

Query: 56  RLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGR 115
            L +   +A  +F+HNKYK++ I     Q+ +  V ++RI D ID+S GP++  T+   +
Sbjct: 215 TLDVDARVALEIFQHNKYKVDFIEEKASQNPERIVKLHRIGDFIDVSEGPLIPRTSVCFQ 274

Query: 116 CTIAAAQQVE-TDAGLFYRFQGVALPKSIKGFIPSW 150
             ++A   +  +   L  RFQG++LP  ++     W
Sbjct: 275 YEVSAVHNLNPSQPNLIRRFQGLSLPTHLRAQFTIW 310


>sp|Q54J66|SYTC1_DICDI Probable threonine--tRNA ligase 1, cytoplasmic OS=Dictyostelium
           discoideum GN=thrS1 PE=3 SV=1
          Length = 710

 Score =  115 bits (289), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 118/228 (51%), Gaps = 21/228 (9%)

Query: 201 EKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESD 260
           E INVT   LP+   +   KN +TPY+ A+ +S  L D  V + ++G ++WD+ RPLE+D
Sbjct: 74  EPINVT---LPDGKVVAGIKNKTTPYDIAKGISRGLADSIVSSKVNGEQIWDISRPLEAD 130

Query: 261 CELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYD 320
           C LQL  F   D     +TFW S + +LG  +   +   + +       P    G F YD
Sbjct: 131 CNLQLCKF---DSEEGKKTFWHSSAHILGQAMERIYGGQLCI------GPATSEG-FYYD 180

Query: 321 VQLSGVDNWKPTSAELRVLSAEMV-KLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPS 379
           + +      K  SAE   L  E+  K+  E  PFERL++ +D+A  +F+ NKYK E I  
Sbjct: 181 MAMGD----KIVSAEDYKLINEVAQKIVQEKQPFERLAVPRDIALTMFKFNKYKTEIISK 236

Query: 380 IVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVSFRFFLS 427
           I Q+     V +YR    +D+ RGP + NT+++    +   S  ++L 
Sbjct: 237 IPQEDT---VSLYRCGTLVDLCRGPHVPNTSYIKSFAVTKNSSAYWLG 281



 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 8/100 (8%)

Query: 15  SGSFVYDVQLSGVDNWKPTSAELRVLSAEMV-KLAYEAVPFERLSISQDLAEALFEHNKY 73
           S  F YD+ +      K  SAE   L  E+  K+  E  PFERL++ +D+A  +F+ NKY
Sbjct: 174 SEGFYYDMAMGD----KIVSAEDYKLINEVAQKIVQEKQPFERLAVPRDIALTMFKFNKY 229

Query: 74  KLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHL 113
           K E I  I Q+     V +YR    +D+ RGP + NT+++
Sbjct: 230 KTEIISKIPQEDT---VSLYRCGTLVDLCRGPHVPNTSYI 266


>sp|A5IJ45|SYT_THEP1 Threonine--tRNA ligase OS=Thermotoga petrophila (strain RKU-1 /
           ATCC BAA-488 / DSM 13995) GN=thrS PE=3 SV=1
          Length = 640

 Score = 89.7 bits (221), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 116/215 (53%), Gaps = 25/215 (11%)

Query: 210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 269
           LP+  E   ++ + TP   A+   E+   +++ A+++G +LWD+ RP+E+DCEL+L+   
Sbjct: 7   LPDGKEKEYDRGI-TPAEIAK---ELGVKKAIGAVVNG-ELWDLKRPIENDCELRLVTLE 61

Query: 270 DSDPYHSNRTFWRS--CSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVD 327
           D +       F+R     I+  +V+    K+NV++ +     P +++G F YD     + 
Sbjct: 62  DPEA----PEFYRHTMAHILAQAVMRIYGKENVKLGI----GPTIENG-FYYDFD---IK 109

Query: 328 NWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDG 387
           N K T  +L  +  EM K+  E +P ER  IS++ A  LF +  YKLE I     + I+G
Sbjct: 110 NGKLTEEDLPKIEQEMKKIIKENLPIERKEISKEEARKLFNNQPYKLELI-----EEIEG 164

Query: 388 -KVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVS 421
            +V +YR  + +D+ RGP + +T  +    + +VS
Sbjct: 165 DRVTIYRQGEFVDLCRGPHLPSTGVVKHFKLLSVS 199



 Score = 55.5 bits (132), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 20/148 (13%)

Query: 7   VRGKVSLKSG-------SFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSI 59
           + GK ++K G        F YD     + N K T  +L  +  EM K+  E +P ER  I
Sbjct: 84  IYGKENVKLGIGPTIENGFYYDFD---IKNGKLTEEDLPKIEQEMKKIIKENLPIERKEI 140

Query: 60  SQDLAEALFEHNKYKLEQIPSIVQQSIDG-KVIVYRIKDHIDISRGPMMSNTN---HLGR 115
           S++ A  LF +  YKLE I     + I+G +V +YR  + +D+ RGP + +T    H   
Sbjct: 141 SKEEARKLFNNQPYKLELI-----EEIEGDRVTIYRQGEFVDLCRGPHLPSTGVVKHFKL 195

Query: 116 CTIAAAQQVETDAG-LFYRFQGVALPKS 142
            +++ A    ++   +  R  G A  K 
Sbjct: 196 LSVSGAYWRGSEKNPMLTRVYGTAFAKK 223


>sp|B1L7W6|SYT_THESQ Threonine--tRNA ligase OS=Thermotoga sp. (strain RQ2) GN=thrS PE=3
           SV=1
          Length = 640

 Score = 89.0 bits (219), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 116/215 (53%), Gaps = 25/215 (11%)

Query: 210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 269
           LP+  E   ++ + TP   A+   E+   +++ A+++G +LWD+ RP+E+DCEL+L+   
Sbjct: 7   LPDGKEKEYDRGI-TPAEIAK---ELGVKKAIGAVVNG-ELWDLKRPIENDCELRLVTLE 61

Query: 270 DSDPYHSNRTFWRS--CSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVD 327
           D +       F+R     I+  +V+    K+NV++ +     P +++G F YD     + 
Sbjct: 62  DPEA----PEFYRHTMAHILAQAVMRIYGKENVKLGI----GPTIENG-FYYDFD---IK 109

Query: 328 NWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDG 387
           N + T  +L  +  EM K+  E +P ER  IS++ A  LF +  YKLE I     + I+G
Sbjct: 110 NGRLTEEDLPKIEQEMKKIIKENLPIERKEISKEEARKLFNNQPYKLELI-----EEIEG 164

Query: 388 -KVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVS 421
            +V +YR  + +D+ RGP + +T  +    + +VS
Sbjct: 165 DRVTIYRQGEFVDLCRGPHLPSTGIVKHFKLLSVS 199



 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 20/148 (13%)

Query: 7   VRGKVSLKSG-------SFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSI 59
           + GK ++K G        F YD     + N + T  +L  +  EM K+  E +P ER  I
Sbjct: 84  IYGKENVKLGIGPTIENGFYYDFD---IKNGRLTEEDLPKIEQEMKKIIKENLPIERKEI 140

Query: 60  SQDLAEALFEHNKYKLEQIPSIVQQSIDG-KVIVYRIKDHIDISRGPMMSNTN---HLGR 115
           S++ A  LF +  YKLE I     + I+G +V +YR  + +D+ RGP + +T    H   
Sbjct: 141 SKEEARKLFNNQPYKLELI-----EEIEGDRVTIYRQGEFVDLCRGPHLPSTGIVKHFKL 195

Query: 116 CTIAAAQQVETDAG-LFYRFQGVALPKS 142
            +++ A    ++   +  R  G A  K 
Sbjct: 196 LSVSGAYWRGSEKNPMLTRVYGTAFAKK 223


>sp|P87144|SYTC_SCHPO Threonine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=ths1 PE=3 SV=1
          Length = 703

 Score = 88.2 bits (217), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 123/256 (48%), Gaps = 28/256 (10%)

Query: 178 IVQKQNDIFNK---EFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSE 234
            +Q + D+F+K   E+K       R E+I++T   LP+   +      +TP + A  +S+
Sbjct: 22  FIQHRLDLFDKLQKEYKESLATKPR-EEIDIT---LPDGKVIKGTSWETTPISIAASISK 77

Query: 235 MLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSN 294
            L DR  +A+++G + WD+ RPLE+ C L+L  F D +     R FW S + +LG     
Sbjct: 78  GLADRVTVAIVNG-EPWDLTRPLEASCTLKLCDFNDPE---GKRVFWHSSAHILGEATEL 133

Query: 295 AFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPF 353
           +F        H    P    G F Y++   G+DN +  T+ +   + +   +   +  PF
Sbjct: 134 SF------HCHLCIGPPTDEG-FFYEM---GIDNGRVITNDDYSSIESYAKQAIKQKQPF 183

Query: 354 ERLSISQDLAEALFEHNKYKLEQIPSIVQQSI-DG-KVIVYRIKDHIDISRGPMMSNTNH 411
           ERL IS++    +F +NKYK      I+Q  I DG    VYR    ID+  GP + +T  
Sbjct: 184 ERLVISKEGLLEMFRYNKYK----QYIIQTKIPDGASTTVYRCGPLIDLCTGPHVPHTGR 239

Query: 412 LGRCTIAAVSFRFFLS 427
           +    +   S  +FL 
Sbjct: 240 IKSFAVTKNSSSYFLG 255



 Score = 38.5 bits (88), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 10/100 (10%)

Query: 17  SFVYDVQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKL 75
            F Y++   G+DN +  T+ +   + +   +   +  PFERL IS++    +F +NKYK 
Sbjct: 148 GFFYEM---GIDNGRVITNDDYSSIESYAKQAIKQKQPFERLVISKEGLLEMFRYNKYK- 203

Query: 76  EQIPSIVQQSI-DG-KVIVYRIKDHIDISRGPMMSNTNHL 113
                I+Q  I DG    VYR    ID+  GP + +T  +
Sbjct: 204 ---QYIIQTKIPDGASTTVYRCGPLIDLCTGPHVPHTGRI 240


>sp|Q9WZJ9|SYT_THEMA Threonine--tRNA ligase OS=Thermotoga maritima (strain ATCC 43589 /
           MSB8 / DSM 3109 / JCM 10099) GN=thrS PE=3 SV=1
          Length = 640

 Score = 88.2 bits (217), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 115/215 (53%), Gaps = 25/215 (11%)

Query: 210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 269
           LP+  E   ++ + TP   A+   E+   +++ A+++G +LWD+ RP+E+DCEL+L+   
Sbjct: 7   LPDGKEKEYDRGI-TPAEIAK---ELGIKKAIGAVVNG-ELWDLKRPIENDCELRLVTLE 61

Query: 270 DSDPYHSNRTFWRS--CSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVD 327
           D +       F+R     I+  +V+    K+NV++ +     P +++G F YD     + 
Sbjct: 62  DPEA----PEFYRHTMAHILAQAVMRLYGKENVKLGI----GPTIENG-FYYDFD---IK 109

Query: 328 NWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDG 387
           N + T  +L  +  EM K+  E +P ER  IS++ A  LF    YKLE I     + I+G
Sbjct: 110 NGRLTEEDLPKIEQEMKKIIKENLPIERKEISKEEARELFRDQPYKLELI-----EEIEG 164

Query: 388 -KVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVS 421
            +V +YR  + +D+ RGP + +T  +    + +VS
Sbjct: 165 NRVTIYRQGEFVDLCRGPHLPSTGIVKHFKLLSVS 199



 Score = 53.9 bits (128), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 20/146 (13%)

Query: 9   GKVSLKSG-------SFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQ 61
           GK ++K G        F YD     + N + T  +L  +  EM K+  E +P ER  IS+
Sbjct: 86  GKENVKLGIGPTIENGFYYDFD---IKNGRLTEEDLPKIEQEMKKIIKENLPIERKEISK 142

Query: 62  DLAEALFEHNKYKLEQIPSIVQQSIDG-KVIVYRIKDHIDISRGPMMSNTN---HLGRCT 117
           + A  LF    YKLE I     + I+G +V +YR  + +D+ RGP + +T    H    +
Sbjct: 143 EEARELFRDQPYKLELI-----EEIEGNRVTIYRQGEFVDLCRGPHLPSTGIVKHFKLLS 197

Query: 118 IAAAQQVETDAG-LFYRFQGVALPKS 142
           ++ A    ++   +  R  G A  K 
Sbjct: 198 VSGAYWRGSEKNPMLTRVYGTAFAKK 223


>sp|O04630|SYTM_ARATH Threonine--tRNA ligase, mitochondrial OS=Arabidopsis thaliana
           GN=THRRS PE=2 SV=3
          Length = 709

 Score = 86.3 bits (212), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 105/205 (51%), Gaps = 23/205 (11%)

Query: 223 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 282
           +TP + A  +S+ L + ++++ +D V LWDM+RPLE DC+L+L  F DSD      T W 
Sbjct: 92  TTPMDIAAQISKGLANSALISAVDDV-LWDMNRPLEGDCKLELFKF-DSD--KGRDTLWH 147

Query: 283 SCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDV---QLSGVDNWKPTSAELRVL 339
           S + +LG  L   +      QL   P      G F YD    +L   DN  P+      +
Sbjct: 148 SSAHILGQALEQEYG----CQLCIGPCTTRGEG-FYYDGFYGELGLSDNHFPS------I 196

Query: 340 SAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHID 399
            A   K A EA PFER+ +++D A  +F  N +K+E I  +     D  + VYR    +D
Sbjct: 197 EAGAAKAAKEAQPFERIEVTKDQALEMFSENNFKVELINGL---PADMTITVYRCGPLVD 253

Query: 400 ISRGPMMSNTNHLG--RCTIAAVSF 422
           + RGP + NT+ +   +C  A+ ++
Sbjct: 254 LCRGPHIPNTSFVKAFKCLRASSAY 278



 Score = 45.1 bits (105), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 9/102 (8%)

Query: 52  VPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTN 111
            PFER+ +++D A  +F  N +K+E I  +     D  + VYR    +D+ RGP + NT+
Sbjct: 208 QPFERIEVTKDQALEMFSENNFKVELINGL---PADMTITVYRCGPLVDLCRGPHIPNTS 264

Query: 112 HLG--RCTIAAAQ--QVETDAGLFYRFQGVALP--KSIKGFI 147
            +   +C  A++   + + D     R  G++ P  K +K ++
Sbjct: 265 FVKAFKCLRASSAYWKGDKDRESLQRVYGISYPDQKQLKKYL 306


>sp|P26639|SYTC_HUMAN Threonine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=TARS PE=1
           SV=3
          Length = 723

 Score = 85.9 bits (211), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 21/205 (10%)

Query: 210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 269
           LP+  ++      +TPY  A  +S+ L D +V+A ++ V +WD+ RPLE DC L+LL F 
Sbjct: 87  LPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNV-VWDLDRPLEEDCTLELLKFE 145

Query: 270 DSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQL--SGVD 327
           D +   +   +W S + ++G  +   +   +         P +++G F YD+ L   GV 
Sbjct: 146 DEE---AQAVYWHSSAHIMGEAMERVYGGCLCY------GPPIENG-FYYDMYLEEGGV- 194

Query: 328 NWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDG 387
               +S +   L A   K+  E   FERL + ++   A+F++NK+K   +   V      
Sbjct: 195 ----SSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPT-- 248

Query: 388 KVIVYRIKDHIDISRGPMMSNTNHL 412
              VYR    ID+ RGP + +T  +
Sbjct: 249 -TTVYRCGPLIDLCRGPHVRHTGKI 272



 Score = 42.7 bits (99), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 14/130 (10%)

Query: 17  SFVYDVQL--SGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYK 74
            F YD+ L   GV     +S +   L A   K+  E   FERL + ++   A+F++NK+K
Sbjct: 182 GFYYDMYLEEGGV-----SSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFK 236

Query: 75  LEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTI----AAAQQVETDAGL 130
              +   V         VYR    ID+ RGP + +T  +    I    +   + + D   
Sbjct: 237 CRILNEKVNTPT---TTVYRCGPLIDLCRGPHVRHTGKIKALKIHKNSSTYWEGKADMET 293

Query: 131 FYRFQGVALP 140
             R  G++ P
Sbjct: 294 LQRIYGISFP 303


>sp|Q0V9S0|SYTC2_XENTR Probable threonine--tRNA ligase 2, cytoplasmic OS=Xenopus
           tropicalis GN=tarsl2 PE=2 SV=1
          Length = 814

 Score = 85.9 bits (211), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 19/191 (9%)

Query: 223 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 282
           +TPY  A  +S+ L D  V+A ++  +LWD+ RPLE D  ++LL F   D   +   +W 
Sbjct: 191 TTPYQVAIGISKGLADNVVIAKVNN-ELWDLDRPLEQDSNVELLKF---DSEEAQAVYWH 246

Query: 283 SCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAE 342
           S + +LG  + N +   +         P +++G F YD+ L G      +S E   L   
Sbjct: 247 SSAHILGETMENFYGGCLCY------GPPIENG-FYYDMYLDGRG---VSSNEFPSLENM 296

Query: 343 MVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDG-KVIVYRIKDHIDIS 401
              +  E  PFERL +S+DL   +F++NK+K      I+ + +D     VYR    ID+ 
Sbjct: 297 CKAIIKEKQPFERLEVSKDLLLEMFKYNKFKC----RILNEKVDTPTTTVYRCGPLIDLC 352

Query: 402 RGPMMSNTNHL 412
           RGP + +T  +
Sbjct: 353 RGPHVRHTGKI 363



 Score = 50.4 bits (119), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 12/131 (9%)

Query: 17  SFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLE 76
            F YD+ L G      +S E   L      +  E  PFERL +S+DL   +F++NK+K  
Sbjct: 273 GFYYDMYLDGRG---VSSNEFPSLENMCKAIIKEKQPFERLEVSKDLLLEMFKYNKFKC- 328

Query: 77  QIPSIVQQSIDG-KVIVYRIKDHIDISRGPMMSNTNHLGRCTI----AAAQQVETDAGLF 131
               I+ + +D     VYR    ID+ RGP + +T  +    I    +   +   D    
Sbjct: 329 ---RILNEKVDTPTTTVYRCGPLIDLCRGPHVRHTGKIKTLKIYKNSSTYWEGRADMETL 385

Query: 132 YRFQGVALPKS 142
            R  G++ P S
Sbjct: 386 QRIYGISFPDS 396


>sp|Q8BLY2|SYTC2_MOUSE Probable threonine--tRNA ligase 2, cytoplasmic OS=Mus musculus
           GN=Tarsl2 PE=2 SV=1
          Length = 790

 Score = 85.1 bits (209), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 104/209 (49%), Gaps = 19/209 (9%)

Query: 223 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 282
           +TPY  A  +S+ L + +V+A ++GV LWD+ RPLE D  ++LL F   D   +   +W 
Sbjct: 167 TTPYQVAAGISKELAEHTVIAKVNGV-LWDLDRPLEGDSTVELLMF---DNEEAQAVYWH 222

Query: 283 SCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAE 342
           S + +LG  +   +        H    P +++G F YD+    +++   +S EL  L   
Sbjct: 223 SSAHILGEAMELYYGG------HLCYGPPIENG-FYYDM---FIEDRVVSSTELSALENI 272

Query: 343 MVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDG-KVIVYRIKDHIDIS 401
              +  E  PFERL +S+D    +F++NK+K      I+++ +D     VYR    ID+ 
Sbjct: 273 CKTIIKEKQPFERLEVSKDTLLEMFKYNKFKC----RILKEKVDTPTTTVYRCGPLIDLC 328

Query: 402 RGPMMSNTNHLGRCTIAAVSFRFFLSPPS 430
           +GP + +T  +    I   S  ++   P 
Sbjct: 329 KGPHVRHTGKIKAIKIFKNSSTYWEGNPE 357



 Score = 44.7 bits (104), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 9/115 (7%)

Query: 33  TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDG-KVI 91
           +S EL  L      +  E  PFERL +S+D    +F++NK+K      I+++ +D     
Sbjct: 262 SSTELSALENICKTIIKEKQPFERLEVSKDTLLEMFKYNKFKC----RILKEKVDTPTTT 317

Query: 92  VYRIKDHIDISRGPMMSNTNHLGRCTI----AAAQQVETDAGLFYRFQGVALPKS 142
           VYR    ID+ +GP + +T  +    I    +   +   +     R  G++ P S
Sbjct: 318 VYRCGPLIDLCKGPHVRHTGKIKAIKIFKNSSTYWEGNPEMETLQRIYGISFPDS 372


>sp|Q3UQ84|SYTM_MOUSE Threonine--tRNA ligase, mitochondrial OS=Mus musculus GN=Tars2 PE=2
           SV=1
          Length = 723

 Score = 85.1 bits (209), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 101/207 (48%), Gaps = 22/207 (10%)

Query: 210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 269
           LPE  ++      +TPY  A  +S  L D +V A ++G +L+D+ RPLE+DC L+ L F 
Sbjct: 70  LPEGQKVDAVAWNTTPYQLAHQISVTLADTAVAAEVNG-ELYDLDRPLETDCHLRFLTF- 127

Query: 270 DSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSF--PSPNVKSGSFVYDVQLSGVD 327
             D       FW S + +LG+          E QL +     P+ +SG F +D  L    
Sbjct: 128 --DSPEGKAVFWHSSAHVLGAA--------AEQQLGAVLCRGPSTESG-FYHDFFLGKER 176

Query: 328 NWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDG 387
             +  SAEL +L     +L   A PF RL  S+D    LF+ N +KL     ++++ + G
Sbjct: 177 TVR--SAELPILERICQELIAAAQPFRRLEASRDQLRQLFKDNHFKLH----LIEEKVTG 230

Query: 388 KV-IVYRIKDHIDISRGPMMSNTNHLG 413
               VY     +D+ RGP + +T  +G
Sbjct: 231 PTATVYGCGMSVDLCRGPHLRHTGQIG 257



 Score = 46.2 bits (108), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 5/82 (6%)

Query: 34  SAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKV-IV 92
           SAEL +L     +L   A PF RL  S+D    LF+ N +KL     ++++ + G    V
Sbjct: 180 SAELPILERICQELIAAAQPFRRLEASRDQLRQLFKDNHFKLH----LIEEKVTGPTATV 235

Query: 93  YRIKDHIDISRGPMMSNTNHLG 114
           Y     +D+ RGP + +T  +G
Sbjct: 236 YGCGMSVDLCRGPHLRHTGQIG 257


>sp|A6QNM8|SYTC2_BOVIN Probable threonine--tRNA ligase 2, cytoplasmic OS=Bos taurus
           GN=TARSL2 PE=2 SV=1
          Length = 724

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 101/208 (48%), Gaps = 17/208 (8%)

Query: 223 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 282
           +TPY  A  +S+ L + +V+A ++G +LWD+ RPLE D  ++LL F D +   +   +W 
Sbjct: 177 TTPYQVAAEISQELAETTVVAKVNG-ELWDLDRPLEGDATVELLTFEDEE---ARAVYWH 232

Query: 283 SCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAE 342
           S + +LG  L   +       L     P    GSF YDV L   ++   +SAEL VL + 
Sbjct: 233 SSAHVLGEALELHYGG-----LLCCSPPG--DGSFHYDVYL---EDRAVSSAELPVLESM 282

Query: 343 MVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISR 402
              +  E  PFERL +S  +   LF++NK+K   +   V         VYR    +++ +
Sbjct: 283 CQAIIKEQQPFERLEVSTKVLLDLFKYNKFKCRILKEKVATPT---TTVYRCGPLVELCK 339

Query: 403 GPMMSNTNHLGRCTIAAVSFRFFLSPPS 430
           GP + +T  +    I   S  ++   P 
Sbjct: 340 GPHVRHTGTIKVIKIFKNSLAYWADNPE 367



 Score = 47.0 bits (110), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 16  GSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKL 75
           GSF YDV L   ++   +SAEL VL +    +  E  PFERL +S  +   LF++NK+K 
Sbjct: 258 GSFHYDVYL---EDRAVSSAELPVLESMCQAIIKEQQPFERLEVSTKVLLDLFKYNKFKC 314

Query: 76  EQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTN 111
             +   V         VYR    +++ +GP + +T 
Sbjct: 315 RILKEKVATPT---TTVYRCGPLVELCKGPHVRHTG 347


>sp|A2RTX5|SYTC2_HUMAN Probable threonine--tRNA ligase 2, cytoplasmic OS=Homo sapiens
           GN=TARSL2 PE=1 SV=1
          Length = 802

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 19/209 (9%)

Query: 223 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 282
           +TPY  A  +S+ L + +V+A ++G +LWD+ RPLE D  L+LL F   D   +   +W 
Sbjct: 179 TTPYQVAAEISQELAESTVIAKVNG-ELWDLDRPLEGDSSLELLTF---DNEEAQAVYWH 234

Query: 283 SCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAE 342
           S + +LG  +   +        H    P +++G F YD+    +++   +S EL  L   
Sbjct: 235 SSAHILGEAMELYYGG------HLCYGPPIENG-FYYDM---FIEDRAVSSTELSALENI 284

Query: 343 MVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSID-GKVIVYRIKDHIDIS 401
              +  E  PFERL +S+++   +F++NK+K      I+ + ++     VYR    ID+ 
Sbjct: 285 CKAIIKEKQPFERLEVSKEILLEMFKYNKFKC----RILNEKVNTATTTVYRCGPLIDLC 340

Query: 402 RGPMMSNTNHLGRCTIAAVSFRFFLSPPS 430
           +GP + +T  +    I   S  ++   P 
Sbjct: 341 KGPHVRHTGKIKTIKIFKNSSTYWEGNPE 369



 Score = 42.4 bits (98), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 8/98 (8%)

Query: 17  SFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLE 76
            F YD+    +++   +S EL  L      +  E  PFERL +S+++   +F++NK+K  
Sbjct: 261 GFYYDM---FIEDRAVSSTELSALENICKAIIKEKQPFERLEVSKEILLEMFKYNKFKC- 316

Query: 77  QIPSIVQQSID-GKVIVYRIKDHIDISRGPMMSNTNHL 113
               I+ + ++     VYR    ID+ +GP + +T  +
Sbjct: 317 ---RILNEKVNTATTTVYRCGPLIDLCKGPHVRHTGKI 351


>sp|Q5XHY5|SYTC_RAT Threonine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Tars
           PE=2 SV=1
          Length = 695

 Score = 82.4 bits (202), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 21/205 (10%)

Query: 210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 269
           LP+  ++      +TPY  A  +S+ L D +V+A ++ V +WD+ RPLE+DC L+LL F 
Sbjct: 59  LPDGKQVDAESWKTTPYQIACGISQGLADNTVVAKVNKV-VWDLDRPLETDCTLELLKFE 117

Query: 270 DSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQL--SGVD 327
           D +   +   +W S + ++G  +   +   +         P +++G F YD+ L   GV 
Sbjct: 118 DEE---AQAVYWHSSAHIMGEAMERVYGGCLCY------GPPIENG-FYYDMYLEEGGV- 166

Query: 328 NWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDG 387
               +S +   L     K+  E   FERL + ++    +F++NK+K   +   V      
Sbjct: 167 ----SSNDFSSLETLCKKIIKEKQTFERLEVKKETLLEMFKYNKFKCRILNEKVNTPT-- 220

Query: 388 KVIVYRIKDHIDISRGPMMSNTNHL 412
              VYR    ID+ RGP + +T  +
Sbjct: 221 -TTVYRCGPLIDLCRGPHVRHTGKI 244



 Score = 39.7 bits (91), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 14/130 (10%)

Query: 17  SFVYDVQL--SGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYK 74
            F YD+ L   GV     +S +   L     K+  E   FERL + ++    +F++NK+K
Sbjct: 154 GFYYDMYLEEGGV-----SSNDFSSLETLCKKIIKEKQTFERLEVKKETLLEMFKYNKFK 208

Query: 75  LEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTI----AAAQQVETDAGL 130
              +   V         VYR    ID+ RGP + +T  +    I    +   + + D   
Sbjct: 209 CRILNEKVNTPT---TTVYRCGPLIDLCRGPHVRHTGKIKTLKIHKNSSTYWEGKADMET 265

Query: 131 FYRFQGVALP 140
             R  G++ P
Sbjct: 266 LQRIYGISFP 275


>sp|Q9D0R2|SYTC_MOUSE Threonine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Tars PE=1
           SV=2
          Length = 722

 Score = 82.0 bits (201), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 21/205 (10%)

Query: 210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 269
           LP+  ++      +TPY  A  +S+ L D +V+A ++ V +WD+ RPLE+DC L+LL F 
Sbjct: 86  LPDGKQVDAESWKTTPYQIACGISQGLADNTVVAKVNKV-VWDLDRPLETDCTLELLKFE 144

Query: 270 DSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQL--SGVD 327
           D +   +   +W S + ++G  +   +   +         P +++G F YD+ L   GV 
Sbjct: 145 DEE---AQAVYWHSSAHIMGEAMERVYGGCLCY------GPPIENG-FYYDMYLEEGGV- 193

Query: 328 NWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDG 387
               +S +   L     K+  E   FERL + ++    +F++NK+K   +   V      
Sbjct: 194 ----SSNDFSSLETLCKKIIKEKQTFERLEVKKETLLEMFKYNKFKCRILNEKVNTPT-- 247

Query: 388 KVIVYRIKDHIDISRGPMMSNTNHL 412
              VYR    ID+ RGP + +T  +
Sbjct: 248 -TTVYRCGPLIDLCRGPHVRHTGKI 271



 Score = 39.7 bits (91), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 14/130 (10%)

Query: 17  SFVYDVQL--SGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYK 74
            F YD+ L   GV     +S +   L     K+  E   FERL + ++    +F++NK+K
Sbjct: 181 GFYYDMYLEEGGV-----SSNDFSSLETLCKKIIKEKQTFERLEVKKETLLEMFKYNKFK 235

Query: 75  LEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTI----AAAQQVETDAGL 130
              +   V         VYR    ID+ RGP + +T  +    I    +   + + D   
Sbjct: 236 CRILNEKVNTPT---TTVYRCGPLIDLCRGPHVRHTGKIKTLKIHKNSSTYWEGKADMET 292

Query: 131 FYRFQGVALP 140
             R  G++ P
Sbjct: 293 LQRIYGISFP 302


>sp|Q3ZBV8|SYTC_BOVIN Threonine--tRNA ligase, cytoplasmic OS=Bos taurus GN=TARS PE=2 SV=1
          Length = 723

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 21/205 (10%)

Query: 210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 269
           LP+  ++      +TPY  A  +S+ L D +V+A ++   +WD+ RPLE DC L+LL F 
Sbjct: 87  LPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNKA-VWDLDRPLEEDCTLELLKFE 145

Query: 270 DSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQL--SGVD 327
           D +   +   +W S + ++G  +   +   +         P +++G F YD+ L   GV 
Sbjct: 146 DEE---AQAVYWHSSAHIMGEAMERVYGGCLCY------GPPIENG-FYYDMYLEEGGV- 194

Query: 328 NWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDG 387
               +S +   L     K+  E   FERL + ++    +F++NK+K   +   V      
Sbjct: 195 ----SSNDFSSLETLCKKIIKEKQAFERLEVKKETLLEMFKYNKFKCRILNEKVNTPT-- 248

Query: 388 KVIVYRIKDHIDISRGPMMSNTNHL 412
              VYR    ID+ RGP + +T  +
Sbjct: 249 -TTVYRCGPLIDLCRGPHVRHTGKI 272



 Score = 40.0 bits (92), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 14/130 (10%)

Query: 17  SFVYDVQL--SGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYK 74
            F YD+ L   GV     +S +   L     K+  E   FERL + ++    +F++NK+K
Sbjct: 182 GFYYDMYLEEGGV-----SSNDFSSLETLCKKIIKEKQAFERLEVKKETLLEMFKYNKFK 236

Query: 75  LEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTI----AAAQQVETDAGL 130
              +   V         VYR    ID+ RGP + +T  +    I    +   + ++D   
Sbjct: 237 CRILNEKVNTPT---TTVYRCGPLIDLCRGPHVRHTGKIKTLKIHKNSSTYWEGKSDMET 293

Query: 131 FYRFQGVALP 140
             R  G++ P
Sbjct: 294 LQRIYGISFP 303


>sp|B9KAN7|SYT_THENN Threonine--tRNA ligase OS=Thermotoga neapolitana (strain ATCC 49049
           / DSM 4359 / NS-E) GN=thrS PE=3 SV=1
          Length = 640

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 108/214 (50%), Gaps = 23/214 (10%)

Query: 210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 269
           LP+ +E    K  + P   A+   E+   + + A++D  +LWD+ RPLE DC ++ +   
Sbjct: 7   LPDGSEREYEKG-TKPMEIAR---EVGIKKVIGAVVDE-ELWDLKRPLERDCRIRFVTLE 61

Query: 270 DSDPYHSNRTFWRS--CSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVD 327
           D +       F+R     I+  +V+    K+NV++ +     P +++G F YD  +    
Sbjct: 62  DPEA----PEFYRHTMAHILAQAVMRLYGKENVKLGI----GPTIENG-FYYDFDIR--- 109

Query: 328 NWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDG 387
           N K T  +L  +  EM K+  E +P ER  IS+D A+ +F+   YKLE I  I   +   
Sbjct: 110 NGKLTEEDLPRIEQEMKKIIKENLPIEREEISKDEAKEIFKDQPYKLELIEEIEGDT--- 166

Query: 388 KVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVS 421
            V +YR  + +D+ RGP + +T  +    + +VS
Sbjct: 167 -VTIYRQGEFVDLCRGPHLPSTGVVKHFKLLSVS 199



 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 17/123 (13%)

Query: 9   GKVSLKSG-------SFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQ 61
           GK ++K G        F YD  +    N K T  +L  +  EM K+  E +P ER  IS+
Sbjct: 86  GKENVKLGIGPTIENGFYYDFDIR---NGKLTEEDLPRIEQEMKKIIKENLPIEREEISK 142

Query: 62  DLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTN---HLGRCTI 118
           D A+ +F+   YKLE I  I   +    V +YR  + +D+ RGP + +T    H    ++
Sbjct: 143 DEAKEIFKDQPYKLELIEEIEGDT----VTIYRQGEFVDLCRGPHLPSTGVVKHFKLLSV 198

Query: 119 AAA 121
           + A
Sbjct: 199 SGA 201


>sp|Q68FW7|SYTM_RAT Threonine--tRNA ligase, mitochondrial OS=Rattus norvegicus GN=Tars2
           PE=2 SV=1
          Length = 723

 Score = 80.5 bits (197), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 100/205 (48%), Gaps = 18/205 (8%)

Query: 210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 269
           LPE  ++      +TPY  AQ +S  L D +V A ++G +L+D+ RPLE+DC L+ L F 
Sbjct: 70  LPEGQKVDAVAWNTTPYQLAQQISSTLADTAVAAEVNG-ELYDLDRPLETDCHLRFLTF- 127

Query: 270 DSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNW 329
             D       FWRS + +LG+    A + ++   L     P+ +SG F  D  L      
Sbjct: 128 --DSPEGKAVFWRSSAHVLGA----AAEQHLGAVLCR--GPSTESG-FYLDFFLGKERTV 178

Query: 330 KPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKV 389
           +  S EL  L     ++   A PF RL  S+     LF+ N +KL     ++++ + G  
Sbjct: 179 R--STELPTLERICQEIITAAQPFRRLEASRGQLRQLFKDNHFKLH----VIEEKVTGTT 232

Query: 390 -IVYRIKDHIDISRGPMMSNTNHLG 413
             VY     +D+ +GP + +T  +G
Sbjct: 233 ATVYGCGMSVDLCQGPHLRHTGQIG 257



 Score = 39.3 bits (90), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 9/114 (7%)

Query: 34  SAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKV-IV 92
           S EL  L     ++   A PF RL  S+     LF+ N +KL     ++++ + G    V
Sbjct: 180 STELPTLERICQEIITAAQPFRRLEASRGQLRQLFKDNHFKLH----VIEEKVTGTTATV 235

Query: 93  YRIKDHIDISRGPMMSNTNHLGRCTI----AAAQQVETDAGLFYRFQGVALPKS 142
           Y     +D+ +GP + +T  +G   +    +A  +         R  G++ PK+
Sbjct: 236 YGCGMSVDLCQGPHLRHTGQIGALKLLTNSSALWRSSEAPETLQRVSGISFPKA 289


>sp|Q9BW92|SYTM_HUMAN Threonine--tRNA ligase, mitochondrial OS=Homo sapiens GN=TARS2 PE=1
           SV=1
          Length = 718

 Score = 75.1 bits (183), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 94/192 (48%), Gaps = 18/192 (9%)

Query: 223 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 282
           +TPY  A+ +S  L D +V A ++G + +D+ RPLE+D +L+ L F   D       FW 
Sbjct: 78  TTPYQLARQISSTLADTAVAAQVNG-EPYDLERPLETDSDLRFLTF---DSPEGKAVFWH 133

Query: 283 SCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAE 342
           S + +LG+  +  F   V  +      P+ + G F +D  L      +   +EL VL   
Sbjct: 134 SSTHVLGAA-AEQFLGAVLCR-----GPSTEYG-FYHDFFLGKERTIR--GSELPVLERI 184

Query: 343 MVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDG-KVIVYRIKDHIDIS 401
             +L   A PF RL  S+D    LF+ N +KL     ++++ + G    VY     +D+ 
Sbjct: 185 CQELTAAARPFRRLEASRDQLRQLFKDNPFKLH----LIEEKVTGPTATVYGCGTLVDLC 240

Query: 402 RGPMMSNTNHLG 413
           +GP + +T  +G
Sbjct: 241 QGPHLRHTGQIG 252



 Score = 43.1 bits (100), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 34  SAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDG-KVIV 92
            +EL VL     +L   A PF RL  S+D    LF+ N +KL     ++++ + G    V
Sbjct: 175 GSELPVLERICQELTAAARPFRRLEASRDQLRQLFKDNPFKLH----LIEEKVTGPTATV 230

Query: 93  YRIKDHIDISRGPMMSNTNHLG 114
           Y     +D+ +GP + +T  +G
Sbjct: 231 YGCGTLVDLCQGPHLRHTGQIG 252


>sp|B6YQ95|SYT_AZOPC Threonine--tRNA ligase OS=Azobacteroides pseudotrichonymphae
           genomovar. CFP2 GN=thrS PE=3 SV=1
          Length = 648

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 102/205 (49%), Gaps = 18/205 (8%)

Query: 223 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 282
           +TP   A+ +S  L +  + A ++G ++WD+ RP+  +  ++L   Y  + +   RTFW 
Sbjct: 18  TTPMQIAESISCRLAEEILSANVNG-EMWDLSRPINENASVKL---YKWEDFEGKRTFWH 73

Query: 283 SCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAE 342
           S + +L   L   + +     +H    P +++G F YDV L   D       +L  +  +
Sbjct: 74  SSAHLLAESLQELYPN-----IHFGMGPAIENG-FYYDVDLG--DGVVIKDVDLVTIEKK 125

Query: 343 MVKLAYEAVPFERLSISQDLAEALF--EHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDI 400
           M +LA + +   R ++++  A  LF  +   YK+E I  +     DGK+ VY   +  D+
Sbjct: 126 MQELASKKLSISRQNVTKQNALELFGKKGETYKIELISKLE----DGKITVYTQGNFTDL 181

Query: 401 SRGPMMSNTNHLGRCTIAAVSFRFF 425
            RGP + NT+++    + +V+  ++
Sbjct: 182 CRGPHLPNTSYIKAIKLTSVARAYW 206



 Score = 41.6 bits (96), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 12/132 (9%)

Query: 17  SFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALF--EHNKYK 74
            F YDV L   D       +L  +  +M +LA + +   R ++++  A  LF  +   YK
Sbjct: 101 GFYYDVDLG--DGVVIKDVDLVTIEKKMQELASKKLSISRQNVTKQNALELFGKKGETYK 158

Query: 75  LEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQV----ETDAGL 130
           +E I  +     DGK+ VY   +  D+ RGP + NT+++    + +  +     +     
Sbjct: 159 IELISKLE----DGKITVYTQGNFTDLCRGPHLPNTSYIKAIKLTSVARAYWKGDESRKQ 214

Query: 131 FYRFQGVALPKS 142
             R  G++ PK 
Sbjct: 215 LTRIYGISFPKK 226


>sp|P52709|SYTC_CAEEL Threonine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans
           GN=trs-1 PE=2 SV=1
          Length = 725

 Score = 69.3 bits (168), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 95/199 (47%), Gaps = 20/199 (10%)

Query: 223 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 282
           +TP+  A+ +S+ L + +V+A ++G  +WD+ RP E + +L+LL F D +   + + FW 
Sbjct: 99  TTPFEIAERISKGLAEAAVIAKVNGA-VWDLDRPFEGNAKLELLKFDDDE---AKQVFWH 154

Query: 283 SCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAE 342
           S + +LG  +            H    P ++ G F YD+             ++  +   
Sbjct: 155 SSAHVLGEAMERY------CGGHLCYGPPIQEG-FYYDMWHENRTICPDDFPKIDQIVKA 207

Query: 343 MVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISR 402
            VK   +   FERL ++++    +F++N++K+  I   +      K  VYR    ID+ R
Sbjct: 208 AVK---DKQKFERLEMTKEDLLEMFKYNEFKVRIITEKIHTP---KTTVYRCGPLIDLCR 261

Query: 403 GPMMSNTNHLGRCTIAAVS 421
           GP   +  H G+    A++
Sbjct: 262 GP---HVRHTGKVKAMAIT 277



 Score = 43.1 bits (100), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 17/153 (11%)

Query: 54  FERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHL 113
           FERL ++++    +F++N++K+  I   +      K  VYR    ID+ RGP + +T  +
Sbjct: 215 FERLEMTKEDLLEMFKYNEFKVRIITEKIHTP---KTTVYRCGPLIDLCRGPHVRHTGKV 271

Query: 114 GRCTI----AAAQQVETDAGLFYRFQGVALPKSIKGFIPSWMNMGLSSIE------AGKS 163
               I    ++  + + DA    R  G++ P S +  +  W  +   + +        + 
Sbjct: 272 KAMAITKNSSSYWEGKADAESLQRLYGISFPDSKQ--LKEWQKLQEEAAKRDHRKLGKEH 329

Query: 164 DIFLVIRLGQISSNIVQKQNDIFNK--EFKRQQ 194
           D+F   +L   S+    K   I+NK  +F R+Q
Sbjct: 330 DLFFFHQLSPGSAFWYPKGAHIYNKLVDFIRKQ 362


>sp|Q8SRH2|SYTC_ENCCU Probable threonine--tRNA ligase, cytoplasmic OS=Encephalitozoon
           cuniculi (strain GB-M1) GN=ECU07_1570 PE=3 SV=1
          Length = 640

 Score = 62.8 bits (151), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 99/215 (46%), Gaps = 33/215 (15%)

Query: 223 STPYNCAQHMSEMLCD-----RSVLAL-IDGVKLWDMHRPLESDCELQLLHFYDSDPYHS 276
           +TPY+       +LCD     + V++  IDGV   DM   +  DC+L+L+ F D     +
Sbjct: 21  TTPYD-------ILCDYFKDRKDVISCRIDGV-YSDMSSEILKDCKLELMTFEDDG---A 69

Query: 277 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAE- 335
              FW S + +LG+ L N + D   V       P ++ G F YDV ++      P S+E 
Sbjct: 70  RDIFWHSSAHVLGNALVNLYPDAKLVH-----GPPIEEG-FFYDVDVT-----DPISSED 118

Query: 336 LRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIK 395
              +  EMVK+  +   FER+  S++     +  N  K       + + +D +  VYR  
Sbjct: 119 YEKIEEEMVKIMKKNYRFERVIKSKEELLEAYRDNPCKTH----FIMKGVDKESSVYRNG 174

Query: 396 DHIDISRGPMMSNTNHLGRCTIAAVSFRFFLSPPS 430
           D  D+  GP + +T  +    +   S  +FL+ P+
Sbjct: 175 DFFDMCLGPHIRSTGVIKAVKVLKNSSAYFLNDPN 209



 Score = 32.7 bits (73), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 10/96 (10%)

Query: 17  SFVYDVQLSGVDNWKPTSAE-LRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKL 75
            F YDV ++      P S+E    +  EMVK+  +   FER+  S++     +  N  K 
Sbjct: 103 GFFYDVDVT-----DPISSEDYEKIEEEMVKIMKKNYRFERVIKSKEELLEAYRDNPCKT 157

Query: 76  EQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTN 111
                 + + +D +  VYR  D  D+  GP + +T 
Sbjct: 158 H----FIMKGVDKESSVYRNGDFFDMCLGPHIRSTG 189


>sp|C0QAP1|SYT_DESAH Threonine--tRNA ligase OS=Desulfobacterium autotrophicum (strain
           ATCC 43914 / DSM 3382 / HRM2) GN=thrS PE=3 SV=1
          Length = 636

 Score = 62.8 bits (151), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 101/208 (48%), Gaps = 23/208 (11%)

Query: 203 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 262
           IN+T   LP+D+ +   K      + A+ +SE      V   IDG +L D+   + +DC 
Sbjct: 2   INIT---LPDDS-IKSFKEYPKGMDVARGISEGFARNCVAMEIDG-QLLDLDVEIRNDCA 56

Query: 263 LQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQ 322
           ++L+   D++     R    S + ++   + N   D  ++ +     P V+ G F YD+ 
Sbjct: 57  VRLITTRDAEAVEILR---HSAAHVMAEAVQNLHAD-AKLTI----GPVVEDG-FYYDID 107

Query: 323 LSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQ 382
           ++ +     + A+   + AEM K+     PF+R  I++  A  LF+ N YK+E I  +  
Sbjct: 108 MAPI-----SDADFPKIEAEMAKIVKAKKPFQRSEITKQEALELFKDNPYKVELINGLDD 162

Query: 383 QSIDGKVIVYRIKDHIDISRGPMMSNTN 410
           Q+I     +Y+  D +D+ RGP + +T 
Sbjct: 163 QTIS----IYQQGDFVDLCRGPHIPHTG 186



 Score = 52.0 bits (123), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 15/137 (10%)

Query: 17  SFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLE 76
            F YD+ ++ +     + A+   + AEM K+     PF+R  I++  A  LF+ N YK+E
Sbjct: 101 GFYYDIDMAPI-----SDADFPKIEAEMAKIVKAKKPFQRSEITKQEALELFKDNPYKVE 155

Query: 77  QIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRC----TIAAAQQVETDAGLFY 132
            I  +  Q+I     +Y+  D +D+ RGP + +T  +       T  A  + + +     
Sbjct: 156 LINGLDDQTIS----IYQQGDFVDLCRGPHIPHTGMIKGLKLMKTSGAYWRADQEKAQLQ 211

Query: 133 RFQGVAL--PKSIKGFI 147
           R  G A    K +K ++
Sbjct: 212 RLYGTAFFDKKELKAYL 228


>sp|B2RJD6|SYT_PORG3 Threonine--tRNA ligase OS=Porphyromonas gingivalis (strain ATCC
           33277 / DSM 20709 / JCM 12257) GN=thrS PE=3 SV=1
          Length = 653

 Score = 62.0 bits (149), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 94/200 (47%), Gaps = 18/200 (9%)

Query: 224 TPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRS 283
           T ++ A  +S  L    + A ++G ++WD+HRP+  D E++L  + D++  H+   FW S
Sbjct: 19  TGWDIAGSISPRLQQDVLAAGVNG-QVWDLHRPINEDAEVKLFKWDDAEGKHA---FWHS 74

Query: 284 CSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEM 343
            + ++   L   +   ++  +     P +++G F YDV     +      A+L  +   M
Sbjct: 75  SAHLMAEALEELYP-GIKFGI----GPAIENG-FYYDVDPG--EGISIKDADLPAIEKRM 126

Query: 344 VKLAYEAVPFERLSISQDLAEALF--EHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDIS 401
             LA       R  I++  A  +F  + ++YK+E I  +     DG +  Y      D+ 
Sbjct: 127 QDLAARKETIIRRDIAKADALRMFGDKDDQYKVELISELA----DGTITTYTQGGFTDLC 182

Query: 402 RGPMMSNTNHLGRCTIAAVS 421
           RGP + NT ++    + +V+
Sbjct: 183 RGPHLPNTGYIKAIKLLSVA 202


>sp|A6L9S2|SYT_PARD8 Threonine--tRNA ligase OS=Parabacteroides distasonis (strain ATCC
           8503 / DSM 20701 / NCTC 11152) GN=thrS PE=3 SV=1
          Length = 651

 Score = 60.5 bits (145), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 98/210 (46%), Gaps = 29/210 (13%)

Query: 223 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 282
           +T    A+ +S  L    + A ++G ++WD+ RP+  D  ++LL + D +  H+   FW 
Sbjct: 18  TTAMQIAESISSRLAQEVLAASVNG-EVWDLSRPINDDATVKLLKWEDEEGKHA---FWH 73

Query: 283 SCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELR----- 337
           S + ++   L   +   ++  +     P +++G F YDV         P  A ++     
Sbjct: 74  SSAHLMAEALQELYP-GIKFGI----GPAIENG-FYYDVD--------PGEAVIKEGDFA 119

Query: 338 VLSAEMVKLAYEAVPFERLSISQDLAEALF--EHNKYKLEQIPSIVQQSIDGKVIVYRIK 395
            + A+M++L  +    +R  I++  A  +F     +YK E    ++ +  DG +  Y   
Sbjct: 120 AIEAKMLELVAKKEEIKRQDITKADAMKMFGDRGEEYKTE----LISELEDGTITTYTQG 175

Query: 396 DHIDISRGPMMSNTNHLGRCTIAAVSFRFF 425
              D+ RGP + NT++L    I +V+  ++
Sbjct: 176 SFTDLCRGPHLPNTSYLKAVKILSVAGAYW 205



 Score = 34.3 bits (77), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 10/115 (8%)

Query: 34  SAELRVLSAEMVKLAYEAVPFERLSISQDLAEALF--EHNKYKLEQIPSIVQQSIDGKVI 91
             +   + A+M++L  +    +R  I++  A  +F     +YK E    ++ +  DG + 
Sbjct: 115 EGDFAAIEAKMLELVAKKEEIKRQDITKADAMKMFGDRGEEYKTE----LISELEDGTIT 170

Query: 92  VYRIKDHIDISRGPMMSNTNHLGRCTI----AAAQQVETDAGLFYRFQGVALPKS 142
            Y      D+ RGP + NT++L    I     A  + +       R  G+  PK 
Sbjct: 171 TYTQGSFTDLCRGPHLPNTSYLKAVKILSVAGAYWRGDEKRKQLVRLYGITFPKK 225


>sp|A8F8Q8|SYT_THELT Threonine--tRNA ligase OS=Thermotoga lettingae (strain ATCC BAA-301
           / DSM 14385 / TMO) GN=thrS PE=3 SV=1
          Length = 638

 Score = 60.1 bits (144), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 99/195 (50%), Gaps = 20/195 (10%)

Query: 231 HMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLH-FYDSDPYHSNRTFWRSCSIMLG 289
            + E++    V+A +   KL D+   ++SD E++ +  F++  P      +  + S +L 
Sbjct: 20  QIREIIRSDEVIAAVFNGKLIDLRSTIDSDGEVEFVDLFHELAP----EVYRHTMSHILA 75

Query: 290 SVLSNAF-KDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAY 348
             + N + K NV + +     P +++G F YD ++    N K T  +L  +  EM K+  
Sbjct: 76  QAVMNVYGKKNVRLGI----GPAIENG-FYYDFEIL---NGKITEEDLSRIEEEMKKIIE 127

Query: 349 EAVPFERLSISQDLAEALF--EHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMM 406
           + +P ER+ +S+D A +    +   YK+E    ++++  D KV +++  D +D+ RGP M
Sbjct: 128 QNIPVERIEMSKDDAISFMTEKDQPYKVE----LLKEIQDNKVTLFKQGDFVDLCRGPHM 183

Query: 407 SNTNHLGRCTIAAVS 421
            +T  +    + +VS
Sbjct: 184 PSTGMVKHFKLLSVS 198



 Score = 46.6 bits (109), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 19/128 (14%)

Query: 6   DVRGKVSLKSG-------SFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLS 58
           +V GK +++ G        F YD ++    N K T  +L  +  EM K+  + +P ER+ 
Sbjct: 80  NVYGKKNVRLGIGPAIENGFYYDFEIL---NGKITEEDLSRIEEEMKKIIEQNIPVERIE 136

Query: 59  ISQDLAEALF--EHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTN---HL 113
           +S+D A +    +   YK+E    ++++  D KV +++  D +D+ RGP M +T    H 
Sbjct: 137 MSKDDAISFMTEKDQPYKVE----LLKEIQDNKVTLFKQGDFVDLCRGPHMPSTGMVKHF 192

Query: 114 GRCTIAAA 121
              +++ A
Sbjct: 193 KLLSVSGA 200


>sp|Q1MRV8|SYT_LAWIP Threonine--tRNA ligase OS=Lawsonia intracellularis (strain
           PHE/MN1-00) GN=thrS PE=3 SV=1
          Length = 642

 Score = 60.1 bits (144), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 18/142 (12%)

Query: 283 SCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKP-TSAELRVLSA 341
           S + +L + + N F   V++ +     P++++G F YD      D  +P T  +   + A
Sbjct: 72  SAAHILAAAVKNLFP-TVKISI----GPSIENG-FYYDF-----DAERPFTPEDFPAIEA 120

Query: 342 EMVKLAYEAVPFERLSISQDLAEALFE--HNKYKLEQIPSIVQQSIDGKVIVYRIKDHID 399
           EM ++  E++PFER+ IS+  A   F   H  YK+E I S+     DG + +YRI +  D
Sbjct: 121 EMQRIINESIPFERIEISKAEALEFFSSLHENYKVEIINSLE----DGNITLYRIGNFTD 176

Query: 400 ISRGPMMSNTNHLGRCTIAAVS 421
           + +GP + NTN +    + +V+
Sbjct: 177 LCKGPHVPNTNFIKAFKLLSVA 198



 Score = 56.6 bits (135), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 19/125 (15%)

Query: 12  SLKSGSFVYDVQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFE- 69
           S+++G F YD      D  +P T  +   + AEM ++  E++PFER+ IS+  A   F  
Sbjct: 95  SIENG-FYYDF-----DAERPFTPEDFPAIEAEMQRIINESIPFERIEISKAEALEFFSS 148

Query: 70  -HNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDA 128
            H  YK+E I S+     DG + +YRI +  D+ +GP + NTN +       A ++ + A
Sbjct: 149 LHENYKVEIINSLE----DGNITLYRIGNFTDLCKGPHVPNTNFI------KAFKLLSVA 198

Query: 129 GLFYR 133
           G ++R
Sbjct: 199 GAYWR 203


>sp|P04801|SYTC_YEAST Threonine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=THS1 PE=1 SV=2
          Length = 734

 Score = 58.9 bits (141), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 102/230 (44%), Gaps = 36/230 (15%)

Query: 223 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDC----ELQLLHFYDSDPYHSNR 278
           +TP + A+ +S+ L DR  ++ ++G +LWD+ RP E +     +L+LL F +SD     +
Sbjct: 92  TTPMDIAKGISKSLADRLCISKVNG-QLWDLDRPFEGEANEEIKLELLDF-ESD--EGKK 147

Query: 279 TFWRSCSIMLGSVLSNAFKDNVEVQL--HSFPSPNVKSGSFVYDVQLSGVDNWKPTSAEL 336
            FW S + +LG        ++ E  L  H    P    G F Y++ +         S E 
Sbjct: 148 VFWHSSAHVLG--------ESCECHLGAHICLGPPTDDG-FFYEMAVRDSMKDISESPER 198

Query: 337 RVLSAEMVKLA-------YEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKV 389
            V  A+   L         +   FERL +S++    +F ++KYK   + + V     G  
Sbjct: 199 TVSQADFPGLEGVAKNVIKQKQKFERLVMSKEDLLKMFHYSKYKTYLVQTKVPDG--GAT 256

Query: 390 IVYRIKDHIDISRGPMMSNTNHLGRCTIAAVSFRFFLSPPSCLLSSNATT 439
            VYR    ID+  GP +    H GR      +F+  L   SC    +AT 
Sbjct: 257 TVYRCGKLIDLCVGPHIP---HTGRIK----AFK-LLKNSSCYFLGDATN 298


>sp|Q7MVQ5|SYT_PORGI Threonine--tRNA ligase OS=Porphyromonas gingivalis (strain ATCC
           BAA-308 / W83) GN=thrS PE=3 SV=1
          Length = 653

 Score = 58.5 bits (140), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 93/200 (46%), Gaps = 18/200 (9%)

Query: 224 TPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRS 283
           T ++ A  +S  L    + A ++G ++WD+HR +  D E++L  + D++  H+   FW S
Sbjct: 19  TGWDIAGSISPRLQQDVLAAGVNG-QVWDLHRQINEDAEVKLFKWDDAEGKHA---FWHS 74

Query: 284 CSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEM 343
            + ++   L   +   ++  +     P +++G F YDV     +      A+L  +   M
Sbjct: 75  SAHLMAEALEELYP-GIKFGI----GPAIENG-FYYDVDPG--EGISIKDADLPAIEKRM 126

Query: 344 VKLAYEAVPFERLSISQDLAEALF--EHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDIS 401
             LA       R  I++  A  +F  + ++YK+E I  +     DG +  Y      D+ 
Sbjct: 127 QDLAARKETIIRRDIAKADALRMFGDKDDQYKVELISELA----DGTITTYTQGGFTDLC 182

Query: 402 RGPMMSNTNHLGRCTIAAVS 421
           RGP + NT ++    + +V+
Sbjct: 183 RGPHLPNTGYIKAIKLLSVA 202


>sp|B0S169|SYT_FINM2 Threonine--tRNA ligase OS=Finegoldia magna (strain ATCC 29328)
           GN=thrS PE=3 SV=1
          Length = 634

 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 24/203 (11%)

Query: 227 NCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSI 286
           +  + +SE L    V A++DG K+  +   ++SDCE+Q + F D +     + FW + S 
Sbjct: 22  DVCKSISEGLARDCVGAVVDG-KIMGLMETIDSDCEVQFVKFDDDE---GKQVFWHTSSH 77

Query: 287 MLGSVLSNAFKDNVEVQLHSFP-SPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVK 345
           ++   +   +          F   P++ SG F YD+      + K    +L  + AEM K
Sbjct: 78  LMAYAIQRLYPGT------KFAIGPSIDSG-FYYDLDT----DHKFVPEDLEKIEAEMKK 126

Query: 346 LAYEAVPFERLSISQDLAEALF--EHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRG 403
           +  E     R+ IS+  A   F  E   YK++ I +  +   D  + +Y + D +D+ RG
Sbjct: 127 IVKENPKLVRVEISRKEALERFKNEGQDYKVDLIENFDE---DATITLYEMGDFVDLCRG 183

Query: 404 PMM---SNTNHLGRCTIAAVSFR 423
           P +    N       +IA   +R
Sbjct: 184 PHLLDVKNIKAFKLLSIAGAYWR 206



 Score = 40.0 bits (92), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 14/137 (10%)

Query: 12  SLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALF--E 69
           S+ SG F YD+      + K    +L  + AEM K+  E     R+ IS+  A   F  E
Sbjct: 97  SIDSG-FYYDLDT----DHKFVPEDLEKIEAEMKKIVKENPKLVRVEISRKEALERFKNE 151

Query: 70  HNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMM---SNTNHLGRCTIAAAQ-QVE 125
              YK++ I +  +   D  + +Y + D +D+ RGP +    N       +IA A  + +
Sbjct: 152 GQDYKVDLIENFDE---DATITLYEMGDFVDLCRGPHLLDVKNIKAFKLLSIAGAYWRGD 208

Query: 126 TDAGLFYRFQGVALPKS 142
            +  +  R  G++ PK 
Sbjct: 209 ENNKMLQRIYGISFPKK 225


>sp|Q978W0|SYT_THEVO Threonine--tRNA ligase OS=Thermoplasma volcanium (strain ATCC 51530
           / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=thrS PE=3
           SV=1
          Length = 660

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 95/201 (47%), Gaps = 25/201 (12%)

Query: 229 AQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIML 288
            Q   + + D+ V+A+  G K  D+      D  +Q ++    D  +  R    S + +L
Sbjct: 11  GQRYRDAINDKKVIAVKKGDKFLDLDEIAGEDEAVQPVYLDSEDGLYILR---HSAAHLL 67

Query: 289 GSVLSNAFKDNVEVQLHSFPS--PNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKL 346
            + ++N F +       + P+  P V++G F YD  +  +     T  +L  +  EM ++
Sbjct: 68  ANAVTNLFPE-------ALPNTGPVVENG-FYYDFDMKPI-----TEEDLSKIEEEMKRI 114

Query: 347 AYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMM 406
             E VP  R+  S+D    +F  N YK+     I+ ++++GK  VY+  + +D+  GP +
Sbjct: 115 VKENVPIRRMIYSKDELLKIFSKNPYKIR----IINENVEGKSSVYQQGNFVDLCLGPHV 170

Query: 407 SNTNHLGR---CTIAAVSFRF 424
            +T ++      +IA+  +++
Sbjct: 171 PSTGYIKAFKLLSIASAVYKY 191



 Score = 50.1 bits (118), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 14/136 (10%)

Query: 17  SFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLE 76
            F YD  +  +     T  +L  +  EM ++  E VP  R+  S+D    +F  N YK+ 
Sbjct: 89  GFYYDFDMKPI-----TEEDLSKIEEEMKRIVKENVPIRRMIYSKDELLKIFSKNPYKIR 143

Query: 77  QIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGR---CTIAAAQQVETDAGLFYR 133
               I+ ++++GK  VY+  + +D+  GP + +T ++      +IA+A     ++    R
Sbjct: 144 ----IINENVEGKSSVYQQGNFVDLCLGPHVPSTGYIKAFKLLSIASAVYKYDESKNLVR 199

Query: 134 FQGVALP--KSIKGFI 147
             G A P  KS++ ++
Sbjct: 200 IYGTAFPDEKSLRRYL 215


>sp|Q1AWG4|SYT_RUBXD Threonine--tRNA ligase OS=Rubrobacter xylanophilus (strain DSM 9941
           / NBRC 16129) GN=thrS PE=3 SV=1
          Length = 639

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 31/222 (13%)

Query: 210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 269
           LP+  EL +        + A+ +   L   +V+A ++G +L D+  P++   EL+   F 
Sbjct: 6   LPDGKELEVGSGERLE-DVARRIGPRLARDAVVARLNG-RLVDLDLPVDGGGELE---FV 60

Query: 270 DSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPS------PNVKSGSFVYDVQL 323
            +D          S +  +   +           L  +P       P V  G F YD+++
Sbjct: 61  TADSPEGLYVLRHSTAHAMAQAI-----------LELYPGSKLTIGPPVDDG-FYYDIEV 108

Query: 324 SGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQ 383
           +G    + +  +L  +  +M ++A   +P  R  +S++ A  L+  N YKLE I  I   
Sbjct: 109 NG----RISEEDLPRIEEKMREIARRDLPVRREEVSKEEARRLYRDNPYKLELIDEIP-- 162

Query: 384 SIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVSFRFF 425
             D +V +YR  D  D+ RGP + +T  LG   + +V+  ++
Sbjct: 163 --DERVSIYRQGDFFDLCRGPHVPSTGRLGAFKLQSVAGAYW 202



 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 14/117 (11%)

Query: 17  SFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLE 76
            F YD++++G    + +  +L  +  +M ++A   +P  R  +S++ A  L+  N YKLE
Sbjct: 101 GFYYDIEVNG----RISEEDLPRIEEKMREIARRDLPVRREEVSKEEARRLYRDNPYKLE 156

Query: 77  QIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYR 133
            I  I     D +V +YR  D  D+ RGP + +T  LG      A ++++ AG ++R
Sbjct: 157 LIDEIP----DERVSIYRQGDFFDLCRGPHVPSTGRLG------AFKLQSVAGAYWR 203


>sp|Q03LP1|SYT_STRTD Threonine--tRNA ligase OS=Streptococcus thermophilus (strain ATCC
           BAA-491 / LMD-9) GN=thrS PE=3 SV=1
          Length = 648

 Score = 55.5 bits (132), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 30/219 (13%)

Query: 203 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 262
           IN+T+   P+ A       ++T +  AQ +S  L  +++    +G KL D  R +  D  
Sbjct: 2   INITF---PDGAVREFESGVTT-FEIAQSISNSLAKKALAGKFNG-KLIDTTRVITEDGS 56

Query: 263 LQLLHFYDSDPYHSNR--TFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYD 320
           ++++      P H +       S + +        F D     +H    P ++ G F YD
Sbjct: 57  IEIV-----TPDHEDALPILRHSAAHLFAQAARRLFPD-----IHLGVGPAIEDG-FYYD 105

Query: 321 V--QLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIP 378
              Q   + N      +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I 
Sbjct: 106 TDNQAGQISN-----EDLPRIEEEMKKIVKENFPSIREEVTKDEAREIFKNDPYKLELIE 160

Query: 379 SIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTI 417
                  DG + +YR  +++D+ RGP + +T   GR  I
Sbjct: 161 E--HSEDDGGLTIYRQGEYVDLCRGPHVPST---GRIQI 194



 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 33  TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIV 92
           ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I        DG + +
Sbjct: 114 SNEDLPRIEEEMKKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE--HSEDDGGLTI 171

Query: 93  YRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYR 133
           YR  +++D+ RGP + +T   GR  I     V   AG ++R
Sbjct: 172 YRQGEYVDLCRGPHVPST---GRIQIFHLLNV---AGAYWR 206


>sp|Q5M5B9|SYT_STRT2 Threonine--tRNA ligase OS=Streptococcus thermophilus (strain ATCC
           BAA-250 / LMG 18311) GN=thrS PE=3 SV=1
          Length = 648

 Score = 55.5 bits (132), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 30/219 (13%)

Query: 203 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 262
           IN+T+   P+ A       ++T +  AQ +S  L  +++    +G KL D  R +  D  
Sbjct: 2   INITF---PDGAVREFESGVTT-FEIAQSISNSLAKKALAGKFNG-KLIDTTRVITEDGS 56

Query: 263 LQLLHFYDSDPYHSNR--TFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYD 320
           ++++      P H +       S + +        F D     +H    P ++ G F YD
Sbjct: 57  IEIV-----TPDHEDALPILRHSAAHLFAQAARRLFPD-----IHLGVGPAIEDG-FYYD 105

Query: 321 V--QLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIP 378
              Q   + N      +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I 
Sbjct: 106 TDNQAGQISN-----EDLPRIEEEMKKIVKENFPSIREEVTKDEAREIFKNDPYKLELIE 160

Query: 379 SIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTI 417
                  DG + +YR  +++D+ RGP + +T   GR  I
Sbjct: 161 E--HSEDDGGLTIYRQGEYVDLCRGPHVPST---GRIQI 194



 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 33  TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIV 92
           ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I        DG + +
Sbjct: 114 SNEDLPRIEEEMKKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE--HSEDDGGLTI 171

Query: 93  YRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYR 133
           YR  +++D+ RGP + +T   GR  I     V   AG ++R
Sbjct: 172 YRQGEYVDLCRGPHVPST---GRIQIFHLLNV---AGAYWR 206


>sp|Q5M0T3|SYT_STRT1 Threonine--tRNA ligase OS=Streptococcus thermophilus (strain CNRZ
           1066) GN=thrS PE=3 SV=1
          Length = 648

 Score = 55.5 bits (132), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 30/219 (13%)

Query: 203 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 262
           IN+T+   P+ A       ++T +  AQ +S  L  +++    +G KL D  R +  D  
Sbjct: 2   INITF---PDGAVREFESGVTT-FEIAQSISNSLAKKALAGKFNG-KLIDTTRVITEDGS 56

Query: 263 LQLLHFYDSDPYHSNR--TFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYD 320
           ++++      P H +       S + +        F D     +H    P ++ G F YD
Sbjct: 57  IEIV-----TPDHEDALPILRHSAAHLFAQAARRLFPD-----IHLGVGPAIEDG-FYYD 105

Query: 321 V--QLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIP 378
              Q   + N      +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I 
Sbjct: 106 TDNQAGQISN-----EDLPRIEEEMKKIVKENFPSIREEVTKDEAREIFKNDPYKLELIE 160

Query: 379 SIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTI 417
                  DG + +YR  +++D+ RGP + +T   GR  I
Sbjct: 161 E--HSEDDGGLTIYRQGEYVDLCRGPHVPST---GRIQI 194



 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 33  TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIV 92
           ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I        DG + +
Sbjct: 114 SNEDLPRIEEEMKKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE--HSEDDGGLTI 171

Query: 93  YRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYR 133
           YR  +++D+ RGP + +T   GR  I     V   AG ++R
Sbjct: 172 YRQGEYVDLCRGPHVPST---GRIQIFHLLNV---AGAYWR 206


>sp|Q11UK3|SYT_CYTH3 Threonine--tRNA ligase OS=Cytophaga hutchinsonii (strain ATCC 33406
           / NCIMB 9469) GN=thrS PE=3 SV=1
          Length = 645

 Score = 55.5 bits (132), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 92/200 (46%), Gaps = 19/200 (9%)

Query: 224 TPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRS 283
           T    A  +SE L  R+VLA     ++WD  R + SD  +QLL + D++      TFW S
Sbjct: 19  TSMGIALSISEGLA-RNVLAAKVNGEIWDASRAITSDSTVQLLTWNDTE---GKSTFWHS 74

Query: 284 CSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEM 343
            + +L   L  A     +  +     P +++G F YDV      +   +  +   +  ++
Sbjct: 75  SAHLLAEAL-EALYPGTKFGI----GPAIETG-FYYDVDFG---DRAFSQDDFENIEKKV 125

Query: 344 VKLAYEAVPFERLSISQDLAEALF--EHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDIS 401
           ++LA +   + R  IS+  A A F  + + YKL+ +  +     DG +  Y+     D+ 
Sbjct: 126 LELAKQKNAYIRKEISKKDAVAYFTDKQDPYKLDLLEGLS----DGSITFYKQGAFTDLC 181

Query: 402 RGPMMSNTNHLGRCTIAAVS 421
           RGP + +T  +    + +V+
Sbjct: 182 RGPHIPDTGFIKAVKLMSVA 201


>sp|Q830D0|SYT_ENTFA Threonine--tRNA ligase OS=Enterococcus faecalis (strain ATCC 700802
           / V583) GN=thrS PE=3 SV=1
          Length = 645

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 24/193 (12%)

Query: 224 TPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNR--TFW 281
           T ++ A+ +S  L  +++    +GV L D+ RP+  D  L+++      P H +      
Sbjct: 20  TTFDVAKSISNSLAKKALAGKFNGV-LIDLDRPIVEDGSLEIV-----TPDHEDALGILR 73

Query: 282 RSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWK-PTSAE-LRVL 339
            S + ++ + L   F  N++  +     P + SG F YD      DN + P +AE L  +
Sbjct: 74  HSSAHLMANALRRLFP-NIKFGV----GPAIDSG-FYYDT-----DNGESPVTAEDLPAI 122

Query: 340 SAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHID 399
            AEM+K+  E  P  R  IS+  A  LF  + YK+E I  + +  I   + VY   D +D
Sbjct: 123 EAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLPEDEI---ITVYDQGDFVD 179

Query: 400 ISRGPMMSNTNHL 412
           + RG  + +T  +
Sbjct: 180 LCRGVHVPSTGRI 192



 Score = 43.9 bits (102), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 23/147 (15%)

Query: 12  SLKSGSFVYDVQLSGVDNWK-PTSAE-LRVLSAEMVKLAYEAVPFERLSISQDLAEALFE 69
           ++ SG F YD      DN + P +AE L  + AEM+K+  E  P  R  IS+  A  LF 
Sbjct: 98  AIDSG-FYYDT-----DNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFA 151

Query: 70  HNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTI-------AAAQ 122
            + YK+E I  + +  I   + VY   D +D+ RG  + +T   GR  +        A  
Sbjct: 152 DDPYKVELITDLPEDEI---ITVYDQGDFVDLCRGVHVPST---GRIQVFKLLSVAGAYW 205

Query: 123 QVETDAGLFYRFQGVAL--PKSIKGFI 147
           +  +D  +  R  G A    K +K FI
Sbjct: 206 RGNSDNHMMQRIYGTAFFDKKDLKEFI 232


>sp|Q0AM08|SYT_MARMM Threonine--tRNA ligase OS=Maricaulis maris (strain MCS10) GN=thrS
           PE=3 SV=1
          Length = 644

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 25/216 (11%)

Query: 203 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 262
           INVT   LP+ ++  +    S P + A  +S+ L   +++A +DG + WD+ RPL+ D +
Sbjct: 2   INVT---LPDGSKRELPDGAS-PLDLAADISKSLAKAAIIATVDG-QDWDLKRPLDGDAQ 56

Query: 263 LQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQ 322
           + ++   D       R      + +L   + + F    +V +     P ++ G F YD  
Sbjct: 57  VAIITRKDDKALEVIR---HDTAHILAQAVQDLFP-GTQVTI----GPAIEDG-FYYDFA 107

Query: 323 LSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH--NKYKLEQIPS 379
            S     +P T  +   +   M ++    +PFER    ++ A A FE     YK E I  
Sbjct: 108 RS-----EPFTPEDFEAIEKRMGEIVDADLPFEREVWDRNDAIAKFEEMGEAYKAELIRD 162

Query: 380 IVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRC 415
           + +   D  + +YR  +  D+  GP + +T  +G+ 
Sbjct: 163 LPE---DETITIYRQGEWFDLCLGPHLPSTGKIGKA 195


>sp|Q8DNX8|SYT_STRR6 Threonine--tRNA ligase OS=Streptococcus pneumoniae (strain ATCC
           BAA-255 / R6) GN=thrS PE=3 SV=2
          Length = 647

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 98/217 (45%), Gaps = 26/217 (11%)

Query: 203 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 262
           IN+T+   P+ A       ++T +  AQ +S  L  +++    +G KL D  R +  D  
Sbjct: 2   INITF---PDGAVREFESGVTT-FEIAQSISNSLAKKALAGKFNG-KLIDTTRAITEDGS 56

Query: 263 LQLLHFYDSDPYHSNR--TFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYD 320
           ++++      P H +       S + +        F D     +H    P ++ G F YD
Sbjct: 57  IEIV-----TPDHEDALPILRHSATHLFAQAARRLFPD-----IHLGVGPAIEDG-FYYD 105

Query: 321 VQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSI 380
              +     + ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I   
Sbjct: 106 TDHTA---GQISNEDLPRIEEEMQKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE- 161

Query: 381 VQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTI 417
                +G + +YR  +++D+ RGP + +T   GR  I
Sbjct: 162 -HSEDEGGLTIYRQGEYVDLCRGPHVPST---GRIQI 194



 Score = 45.8 bits (107), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 33  TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIV 92
           ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I        +G + +
Sbjct: 114 SNEDLPRIEEEMQKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE--HSEDEGGLTI 171

Query: 93  YRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYR 133
           YR  +++D+ RGP + +T   GR  I     V   AG ++R
Sbjct: 172 YRQGEYVDLCRGPHVPST---GRIQIFHLLHV---AGAYWR 206


>sp|Q04JD7|SYT_STRP2 Threonine--tRNA ligase OS=Streptococcus pneumoniae serotype 2
           (strain D39 / NCTC 7466) GN=thrS PE=3 SV=1
          Length = 647

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 98/217 (45%), Gaps = 26/217 (11%)

Query: 203 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 262
           IN+T+   P+ A       ++T +  AQ +S  L  +++    +G KL D  R +  D  
Sbjct: 2   INITF---PDGAVREFESGVTT-FEIAQSISNSLAKKALAGKFNG-KLIDTTRAITEDGS 56

Query: 263 LQLLHFYDSDPYHSNR--TFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYD 320
           ++++      P H +       S + +        F D     +H    P ++ G F YD
Sbjct: 57  IEIV-----TPDHEDALPILRHSATHLFAQAARRLFPD-----IHLGVGPAIEDG-FYYD 105

Query: 321 VQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSI 380
              +     + ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I   
Sbjct: 106 TDHTA---GQISNEDLPRIEEEMQKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE- 161

Query: 381 VQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTI 417
                +G + +YR  +++D+ RGP + +T   GR  I
Sbjct: 162 -HSEDEGGLTIYRQGEYVDLCRGPHVPST---GRIQI 194



 Score = 45.8 bits (107), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 33  TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIV 92
           ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I        +G + +
Sbjct: 114 SNEDLPRIEEEMQKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE--HSEDEGGLTI 171

Query: 93  YRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYR 133
           YR  +++D+ RGP + +T   GR  I     V   AG ++R
Sbjct: 172 YRQGEYVDLCRGPHVPST---GRIQIFHLLHV---AGAYWR 206


>sp|C1CFK0|SYT_STRZJ Threonine--tRNA ligase OS=Streptococcus pneumoniae (strain JJA)
           GN=thrS PE=3 SV=1
          Length = 647

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 98/217 (45%), Gaps = 26/217 (11%)

Query: 203 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 262
           IN+T+   P+ A       ++T +  AQ +S  L  +++    +G KL D  R +  D  
Sbjct: 2   INITF---PDGAVREFESGVTT-FEIAQSISNSLAKKALAGKFNG-KLIDTTRAITEDGS 56

Query: 263 LQLLHFYDSDPYHSNR--TFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYD 320
           ++++      P H +       S + +        F D     +H    P ++ G F YD
Sbjct: 57  IEIV-----TPDHEDALPILRHSAAHLFAQAARRLFPD-----IHLGVGPAIEDG-FYYD 105

Query: 321 VQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSI 380
              +     + ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I   
Sbjct: 106 TDNTA---GQISNEDLPRIEEEMQKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE- 161

Query: 381 VQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTI 417
                +G + +YR  +++D+ RGP + +T   GR  I
Sbjct: 162 -HSEDEGGLTIYRQGEYVDLCRGPHVPST---GRIQI 194



 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 33  TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIV 92
           ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I        +G + +
Sbjct: 114 SNEDLPRIEEEMQKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE--HSEDEGGLTI 171

Query: 93  YRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYR 133
           YR  +++D+ RGP + +T   GR  I     V   AG ++R
Sbjct: 172 YRQGEYVDLCRGPHVPST---GRIQIFHLLHV---AGAYWR 206


>sp|C1CSP6|SYT_STRZT Threonine--tRNA ligase OS=Streptococcus pneumoniae (strain
           Taiwan19F-14) GN=thrS PE=3 SV=1
          Length = 647

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 98/217 (45%), Gaps = 26/217 (11%)

Query: 203 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 262
           IN+T+   P+ A       ++T +  AQ +S  L  +++    +G KL D  R +  D  
Sbjct: 2   INITF---PDGAVREFESGVTT-FEIAQSISNSLAKKALAGKFNG-KLIDTTRAITEDGS 56

Query: 263 LQLLHFYDSDPYHSNR--TFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYD 320
           ++++      P H +       S + +        F D     +H    P ++ G F YD
Sbjct: 57  IEIV-----TPDHEDALPILRHSAAHLFAQAARRLFPD-----IHLGVGPAIEDG-FYYD 105

Query: 321 VQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSI 380
              +     + ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I   
Sbjct: 106 TDNTA---GQISNEDLPRIEEEMQKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE- 161

Query: 381 VQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTI 417
                +G + +YR  +++D+ RGP + +T   GR  I
Sbjct: 162 -HSEDEGGLTIYRQGEYVDLCRGPHVPST---GRIQI 194



 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 33  TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIV 92
           ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I        +G + +
Sbjct: 114 SNEDLPRIEEEMQKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE--HSEDEGGLTI 171

Query: 93  YRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYR 133
           YR  +++D+ RGP + +T   GR  I     V   AG ++R
Sbjct: 172 YRQGEYVDLCRGPHVPST---GRIQIFHLLHV---AGAYWR 206


>sp|C1CLX1|SYT_STRZP Threonine--tRNA ligase OS=Streptococcus pneumoniae (strain P1031)
           GN=thrS PE=3 SV=1
          Length = 647

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 98/217 (45%), Gaps = 26/217 (11%)

Query: 203 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 262
           IN+T+   P+ A       ++T +  AQ +S  L  +++    +G KL D  R +  D  
Sbjct: 2   INITF---PDGAVREFESGVTT-FEIAQSISNSLAKKALAGKFNG-KLIDTTRAITEDGS 56

Query: 263 LQLLHFYDSDPYHSNR--TFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYD 320
           ++++      P H +       S + +        F D     +H    P ++ G F YD
Sbjct: 57  IEIV-----TPDHEDALPILRHSAAHLFAQAARRLFPD-----IHLGVGPAIEDG-FYYD 105

Query: 321 VQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSI 380
              +     + ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I   
Sbjct: 106 TDNTA---GQISNEDLPRIEEEMQKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE- 161

Query: 381 VQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTI 417
                +G + +YR  +++D+ RGP + +T   GR  I
Sbjct: 162 -HSEDEGGLTIYRQGEYVDLCRGPHVPST---GRIQI 194



 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 33  TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIV 92
           ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I        +G + +
Sbjct: 114 SNEDLPRIEEEMQKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE--HSEDEGGLTI 171

Query: 93  YRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYR 133
           YR  +++D+ RGP + +T   GR  I     V   AG ++R
Sbjct: 172 YRQGEYVDLCRGPHVPST---GRIQIFHLLHV---AGAYWR 206


>sp|B1I703|SYT_STRPI Threonine--tRNA ligase OS=Streptococcus pneumoniae (strain
           Hungary19A-6) GN=thrS PE=3 SV=1
          Length = 647

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 98/217 (45%), Gaps = 26/217 (11%)

Query: 203 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 262
           IN+T+   P+ A       ++T +  AQ +S  L  +++    +G KL D  R +  D  
Sbjct: 2   INITF---PDGAVREFESGVTT-FEIAQSISNSLAKKALAGKFNG-KLIDTTRAITEDGS 56

Query: 263 LQLLHFYDSDPYHSNR--TFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYD 320
           ++++      P H +       S + +        F D     +H    P ++ G F YD
Sbjct: 57  IEIV-----TPDHEDALPILRHSAAHLFAQAARRLFPD-----IHLGVGPAIEDG-FYYD 105

Query: 321 VQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSI 380
              +     + ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I   
Sbjct: 106 TDNTA---GQISNEDLPRIEEEMQKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE- 161

Query: 381 VQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTI 417
                +G + +YR  +++D+ RGP + +T   GR  I
Sbjct: 162 -HSEDEGGLTIYRQGEYVDLCRGPHVPST---GRIQI 194



 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 33  TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIV 92
           ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I        +G + +
Sbjct: 114 SNEDLPRIEEEMQKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE--HSEDEGGLTI 171

Query: 93  YRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYR 133
           YR  +++D+ RGP + +T   GR  I     V   AG ++R
Sbjct: 172 YRQGEYVDLCRGPHVPST---GRIQIFHLLHV---AGAYWR 206


>sp|C1C8M1|SYT_STRP7 Threonine--tRNA ligase OS=Streptococcus pneumoniae (strain 70585)
           GN=thrS PE=3 SV=1
          Length = 647

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 98/217 (45%), Gaps = 26/217 (11%)

Query: 203 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 262
           IN+T+   P+ A       ++T +  AQ +S  L  +++    +G KL D  R +  D  
Sbjct: 2   INITF---PDGAVREFESGVTT-FEIAQSISNSLAKKALAGKFNG-KLIDTTRAITEDGS 56

Query: 263 LQLLHFYDSDPYHSNR--TFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYD 320
           ++++      P H +       S + +        F D     +H    P ++ G F YD
Sbjct: 57  IEIV-----TPDHEDALPILRHSAAHLFAQAARRLFPD-----IHLGVGPAIEDG-FYYD 105

Query: 321 VQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSI 380
              +     + ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I   
Sbjct: 106 TDNTA---GQISNEDLPRIEEEMQKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE- 161

Query: 381 VQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTI 417
                +G + +YR  +++D+ RGP + +T   GR  I
Sbjct: 162 -HSEDEGGLTIYRQGEYVDLCRGPHVPST---GRIQI 194



 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 33  TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIV 92
           ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I        +G + +
Sbjct: 114 SNEDLPRIEEEMQKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE--HSEDEGGLTI 171

Query: 93  YRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYR 133
           YR  +++D+ RGP + +T   GR  I     V   AG ++R
Sbjct: 172 YRQGEYVDLCRGPHVPST---GRIQIFHLLHV---AGAYWR 206


>sp|Q97PI4|SYT_STRPN Threonine--tRNA ligase OS=Streptococcus pneumoniae serotype 4
           (strain ATCC BAA-334 / TIGR4) GN=thrS PE=1 SV=1
          Length = 647

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 98/217 (45%), Gaps = 26/217 (11%)

Query: 203 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 262
           IN+T+   P+ A       ++T +  AQ +S  L  +++    +G KL D  R +  D  
Sbjct: 2   INITF---PDGAVREFESGVTT-FEIAQSISNSLAKKALAGKFNG-KLIDTTRAITEDGS 56

Query: 263 LQLLHFYDSDPYHSNR--TFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYD 320
           ++++      P H +       S + +        F D     +H    P ++ G F YD
Sbjct: 57  IEIV-----TPDHEDALPILRHSAAHLFAQAARRLFPD-----IHLGVGPAIEDG-FYYD 105

Query: 321 VQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSI 380
              +     + ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I   
Sbjct: 106 TDNTA---GQISNEDLPRIEEEMQKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE- 161

Query: 381 VQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTI 417
                +G + +YR  +++D+ RGP + +T   GR  I
Sbjct: 162 -HSEDEGGLTIYRQGEYVDLCRGPHVPST---GRIQI 194



 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 33  TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIV 92
           ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I        +G + +
Sbjct: 114 SNEDLPRIEEEMQKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE--HSEDEGGLTI 171

Query: 93  YRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYR 133
           YR  +++D+ RGP + +T   GR  I     V   AG ++R
Sbjct: 172 YRQGEYVDLCRGPHVPST---GRIQIFHLLHV---AGAYWR 206


>sp|B8ZM32|SYT_STRPJ Threonine--tRNA ligase OS=Streptococcus pneumoniae (strain ATCC
           700669 / Spain 23F-1) GN=thrS PE=3 SV=1
          Length = 647

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 98/217 (45%), Gaps = 26/217 (11%)

Query: 203 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 262
           IN+T+   P+ A       ++T +  AQ +S  L  +++    +G KL D  R +  D  
Sbjct: 2   INITF---PDGAVREFESGVTT-FEIAQSISNSLAKKALAGKFNG-KLIDTTRAITEDGS 56

Query: 263 LQLLHFYDSDPYHSNR--TFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYD 320
           ++++      P H +       S + +        F D     +H    P ++ G F YD
Sbjct: 57  IEIV-----TPDHEDALPILRHSAAHLFAQAARRLFPD-----IHLGVGPAIEDG-FYYD 105

Query: 321 VQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSI 380
              +     + ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I   
Sbjct: 106 TDNTA---GQISNEDLPRIEEEMQKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE- 161

Query: 381 VQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTI 417
                +G + +YR  +++D+ RGP + +T   GR  I
Sbjct: 162 -HSEDEGGLTIYRQGEYVDLCRGPHVPST---GRIQI 194



 Score = 45.8 bits (107), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 33  TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIV 92
           ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I        +G + +
Sbjct: 114 SNEDLPRIEEEMQKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE--HSEDEGGLTI 171

Query: 93  YRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYR 133
           YR  +++D+ RGP + +T   GR  I     V   AG ++R
Sbjct: 172 YRQGEYVDLCRGPHVPST---GRIQIFHLLHV---AGAYWR 206


>sp|B5E6Q8|SYT_STRP4 Threonine--tRNA ligase OS=Streptococcus pneumoniae serotype 19F
           (strain G54) GN=thrS PE=3 SV=1
          Length = 647

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 98/217 (45%), Gaps = 26/217 (11%)

Query: 203 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 262
           IN+T+   P+ A       ++T +  AQ +S  L  +++    +G KL D  R +  D  
Sbjct: 2   INITF---PDGAIREFESGVTT-FEIAQSISNSLAKKALAGKFNG-KLIDTTRAITEDGS 56

Query: 263 LQLLHFYDSDPYHSNR--TFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYD 320
           ++++      P H +       S + +        F D     +H    P ++ G F YD
Sbjct: 57  IEIV-----TPDHEDALPILRHSAAHLFAQAARRLFPD-----IHLGVGPAIEDG-FYYD 105

Query: 321 VQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSI 380
              +     + ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I   
Sbjct: 106 TDNTA---GQISNEDLPRIEEEMQKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE- 161

Query: 381 VQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTI 417
                +G + +YR  +++D+ RGP + +T   GR  I
Sbjct: 162 -HSEDEGGLTIYRQGEYVDLCRGPHVPST---GRIQI 194



 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 33  TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIV 92
           ++ +L  +  EM K+  E  P  R  +++D A  +F+++ YKLE I        +G + +
Sbjct: 114 SNEDLPRIEEEMQKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEE--HSEDEGGLTI 171

Query: 93  YRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYR 133
           YR  +++D+ RGP + +T   GR  I     V   AG ++R
Sbjct: 172 YRQGEYVDLCRGPHVPST---GRIQIFHLLHV---AGAYWR 206


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,440,374
Number of Sequences: 539616
Number of extensions: 6244872
Number of successful extensions: 16296
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 283
Number of HSP's that attempted gapping in prelim test: 15841
Number of HSP's gapped (non-prelim): 621
length of query: 458
length of database: 191,569,459
effective HSP length: 121
effective length of query: 337
effective length of database: 126,275,923
effective search space: 42554986051
effective search space used: 42554986051
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)