Query psy12008
Match_columns 458
No_of_seqs 360 out of 3150
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 16:19:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12008.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12008hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02908 threonyl-tRNA synthet 100.0 2.4E-46 5.2E-51 409.8 27.1 239 175-432 22-263 (686)
2 PRK12444 threonyl-tRNA synthet 100.0 6E-39 1.3E-43 350.2 24.5 209 203-432 6-216 (639)
3 PRK00413 thrS threonyl-tRNA sy 100.0 6E-37 1.3E-41 335.2 24.4 205 210-432 6-212 (638)
4 PLN02908 threonyl-tRNA synthet 100.0 3.1E-32 6.7E-37 298.6 17.0 180 2-199 137-337 (686)
5 PLN02837 threonine-tRNA ligase 100.0 2.6E-30 5.7E-35 280.0 15.6 177 2-198 61-262 (614)
6 PRK12444 threonyl-tRNA synthet 100.0 6.3E-29 1.4E-33 271.6 16.6 179 2-198 90-289 (639)
7 PRK12305 thrS threonyl-tRNA sy 100.0 3.1E-28 6.7E-33 263.5 16.9 178 2-198 24-221 (575)
8 COG0441 ThrS Threonyl-tRNA syn 100.0 1.7E-28 3.6E-33 259.8 11.6 172 2-198 44-235 (589)
9 PRK12305 thrS threonyl-tRNA sy 99.9 2.2E-27 4.8E-32 256.8 16.9 146 270-432 2-147 (575)
10 PRK00413 thrS threonyl-tRNA sy 99.9 1.3E-26 2.8E-31 253.9 16.8 179 2-198 86-285 (638)
11 TIGR00418 thrS threonyl-tRNA s 99.9 1.6E-26 3.5E-31 249.6 15.6 179 2-198 15-215 (563)
12 PLN02837 threonine-tRNA ligase 99.9 2.7E-26 5.8E-31 248.8 16.9 155 260-432 29-188 (614)
13 COG0441 ThrS Threonyl-tRNA syn 99.9 3.7E-26 7.9E-31 242.1 14.0 161 240-433 2-162 (589)
14 TIGR00418 thrS threonyl-tRNA s 99.9 5E-24 1.1E-28 230.2 15.9 139 281-432 1-141 (563)
15 KOG1637|consensus 99.9 2.1E-24 4.6E-29 216.0 2.8 138 210-428 5-142 (560)
16 PRK14799 thrS threonyl-tRNA sy 99.8 1.5E-19 3.3E-24 192.5 8.9 121 58-198 45-183 (545)
17 PRK01584 alanyl-tRNA synthetas 99.8 2E-18 4.4E-23 183.5 15.5 127 277-421 452-579 (594)
18 KOG1637|consensus 99.7 3.2E-18 6.9E-23 172.0 1.4 283 105-415 118-482 (560)
19 TIGR00344 alaS alanine--tRNA l 99.7 2.2E-16 4.8E-21 176.1 15.2 144 256-421 537-682 (851)
20 PRK00252 alaS alanyl-tRNA synt 99.7 3.8E-16 8.2E-21 174.8 14.9 153 246-421 517-675 (865)
21 PLN02900 alanyl-tRNA synthetas 99.6 1.5E-15 3.2E-20 170.1 15.8 145 256-421 575-722 (936)
22 TIGR03683 A-tRNA_syn_arch alan 99.6 2E-15 4.4E-20 168.9 16.1 156 246-422 563-722 (902)
23 PRK13902 alaS alanyl-tRNA synt 99.6 2.5E-15 5.4E-20 168.1 15.9 141 261-422 575-718 (900)
24 COG0013 AlaS Alanyl-tRNA synth 99.6 8.4E-15 1.8E-19 160.2 14.6 126 279-422 564-690 (879)
25 PRK01584 alanyl-tRNA synthetas 99.6 1.7E-14 3.6E-19 153.8 13.3 117 3-138 471-592 (594)
26 TIGR00344 alaS alanine--tRNA l 99.5 2.6E-13 5.6E-18 151.6 15.6 116 9-143 581-700 (851)
27 PLN02961 alanine-tRNA ligase 99.5 3.7E-13 8.1E-18 128.8 13.9 142 256-421 63-211 (223)
28 PRK00252 alaS alanyl-tRNA synt 99.5 4.7E-13 1E-17 150.1 15.8 116 9-143 574-693 (865)
29 PRK13902 alaS alanyl-tRNA synt 99.4 1.9E-12 4.1E-17 145.2 15.9 115 11-143 616-735 (900)
30 COG0013 AlaS Alanyl-tRNA synth 99.4 3.8E-12 8.2E-17 139.6 16.8 115 10-143 589-707 (879)
31 TIGR03683 A-tRNA_syn_arch alan 99.4 2.8E-12 6.1E-17 143.8 16.1 115 11-143 620-739 (902)
32 PLN02900 alanyl-tRNA synthetas 99.4 2.6E-12 5.6E-17 144.3 15.3 116 10-143 620-740 (936)
33 COG2872 Predicted metal-depend 99.4 1.3E-12 2.9E-17 124.8 11.1 159 240-420 57-220 (241)
34 KOG0188|consensus 99.0 1.9E-09 4.2E-14 114.3 11.8 125 279-421 568-696 (895)
35 PF02824 TGS: TGS domain; Int 98.9 3E-09 6.4E-14 80.5 5.7 55 211-267 6-60 (60)
36 PF07973 tRNA_SAD: Threonyl an 98.9 3.2E-09 6.9E-14 75.1 5.4 40 90-135 1-44 (44)
37 COG2872 Predicted metal-depend 98.9 1.1E-08 2.4E-13 98.0 9.9 101 32-140 135-236 (241)
38 PLN02961 alanine-tRNA ligase 98.8 3.3E-08 7.1E-13 94.7 11.7 91 15-119 113-208 (223)
39 PRK14799 thrS threonyl-tRNA sy 98.8 9.7E-09 2.1E-13 110.1 6.2 58 357-423 45-103 (545)
40 PF07973 tRNA_SAD: Threonyl an 98.7 2.8E-08 6.1E-13 70.2 4.4 32 389-420 1-33 (44)
41 smart00863 tRNA_SAD Threonyl a 98.6 6.3E-08 1.4E-12 68.4 3.8 38 389-426 1-39 (44)
42 KOG2105|consensus 98.5 5.5E-07 1.2E-11 86.7 8.9 145 253-423 86-234 (415)
43 smart00863 tRNA_SAD Threonyl a 98.4 2.3E-07 5.1E-12 65.4 3.7 36 90-131 1-37 (44)
44 KOG0188|consensus 98.4 1.8E-06 3.9E-11 92.2 11.5 112 14-143 596-714 (895)
45 cd01667 TGS_ThrRS_N TGS _ThrRS 98.2 2.3E-06 4.9E-11 63.5 5.5 57 210-268 5-61 (61)
46 cd01616 TGS The TGS domain, na 97.7 7E-05 1.5E-09 55.0 5.1 55 211-267 6-60 (60)
47 cd01668 TGS_RelA_SpoT TGS_RelA 97.5 0.0003 6.5E-09 52.4 5.6 56 210-267 5-60 (60)
48 KOG2105|consensus 96.4 0.037 7.9E-07 54.0 11.1 101 8-121 128-231 (415)
49 COG0317 SpoT Guanosine polypho 95.3 0.037 8E-07 60.9 6.8 93 178-273 359-454 (701)
50 PRK11092 bifunctional (p)ppGpp 94.9 0.028 6E-07 62.6 4.7 64 204-270 387-450 (702)
51 PRK07440 hypothetical protein; 94.2 0.19 4.2E-06 39.0 6.6 59 202-268 4-66 (70)
52 PRK08364 sulfur carrier protei 94.0 0.2 4.4E-06 38.8 6.4 63 202-268 4-66 (70)
53 PRK05659 sulfur carrier protei 93.8 0.25 5.4E-06 37.6 6.4 53 212-268 6-62 (66)
54 cd00565 ThiS ThiaminS ubiquiti 93.2 0.23 4.9E-06 37.8 5.3 53 212-268 5-61 (65)
55 PRK07696 sulfur carrier protei 92.9 0.33 7.2E-06 37.3 5.9 54 212-268 6-63 (67)
56 PRK10872 relA (p)ppGpp synthet 92.9 0.11 2.4E-06 58.0 4.4 65 204-271 405-469 (743)
57 COG2104 ThiS Sulfur transfer p 92.6 0.49 1.1E-05 36.6 6.3 53 212-268 8-64 (68)
58 TIGR00691 spoT_relA (p)ppGpp s 92.5 0.15 3.2E-06 56.9 4.9 65 204-271 361-425 (683)
59 PRK06944 sulfur carrier protei 92.3 0.45 9.8E-06 36.0 5.9 52 212-268 6-61 (65)
60 PRK08053 sulfur carrier protei 91.7 0.7 1.5E-05 35.3 6.3 53 212-268 6-62 (66)
61 PRK06437 hypothetical protein; 91.5 0.6 1.3E-05 35.9 5.8 52 214-269 13-64 (67)
62 PRK06488 sulfur carrier protei 91.2 0.68 1.5E-05 35.2 5.8 52 212-268 6-61 (65)
63 PRK06083 sulfur carrier protei 90.6 1.2 2.6E-05 35.9 7.0 59 202-268 18-80 (84)
64 TIGR01683 thiS thiamine biosyn 87.2 1.7 3.7E-05 32.8 5.4 53 212-268 4-60 (64)
65 PRK05863 sulfur carrier protei 84.1 2.8 6.1E-05 31.8 5.3 53 212-268 6-61 (65)
66 PLN02799 Molybdopterin synthas 82.5 3.2 6.9E-05 32.9 5.2 52 214-267 21-77 (82)
67 cd00754 MoaD Ubiquitin domain 78.8 3.6 7.8E-05 32.1 4.4 50 217-268 21-76 (80)
68 PF02597 ThiS: ThiS family; I 78.2 3.7 7.9E-05 31.7 4.2 51 216-268 16-73 (77)
69 PRK11840 bifunctional sulfur c 77.1 5.7 0.00012 40.1 6.1 53 212-268 6-62 (326)
70 PF10752 DUF2533: Protein of u 76.7 5.1 0.00011 31.8 4.4 38 30-67 43-80 (84)
71 cd01669 TGS_Ygr210_C TGS_Ygr21 75.0 4.5 9.7E-05 31.9 3.9 50 215-267 24-76 (76)
72 cd01666 TGS_DRG_C TGS_DRG_C: 73.8 3.5 7.5E-05 32.5 3.0 51 214-266 17-74 (75)
73 COG0572 Udk Uridine kinase [Nu 72.6 2.2 4.8E-05 40.7 1.8 60 204-274 7-68 (218)
74 PF10752 DUF2533: Protein of u 69.9 9.5 0.00021 30.3 4.5 38 329-366 43-80 (84)
75 PF14453 ThiS-like: ThiS-like 61.4 25 0.00055 26.2 5.1 50 212-267 6-55 (57)
76 PRK01777 hypothetical protein; 59.6 17 0.00037 30.0 4.5 57 215-273 20-81 (95)
77 TIGR01682 moaD molybdopterin c 56.5 23 0.0005 27.7 4.7 43 223-266 27-74 (80)
78 COG1854 LuxS LuxS protein invo 52.0 79 0.0017 28.5 7.5 60 280-348 52-112 (161)
79 PLN03046 D-glycerate 3-kinase; 43.3 43 0.00094 35.4 5.3 39 208-251 215-253 (460)
80 TIGR01687 moaD_arch MoaD famil 38.7 57 0.0012 25.9 4.4 43 223-266 25-82 (88)
81 cd04938 TGS_Obg-like TGS_Obg-l 34.8 76 0.0016 24.9 4.4 51 214-266 24-75 (76)
82 PRK11130 moaD molybdopterin sy 33.8 1E+02 0.0022 24.2 5.0 43 223-266 26-75 (81)
83 PTZ00305 NADH:ubiquinone oxido 27.7 1.8E+02 0.0039 29.1 6.6 43 201-248 67-123 (297)
84 PF14607 GxDLY: N-terminus of 25.6 69 0.0015 28.7 3.0 35 102-143 71-106 (147)
85 PRK02260 S-ribosylhomocysteina 24.5 3.8E+02 0.0083 24.3 7.5 59 280-347 52-111 (158)
86 PF14451 Ub-Mut7C: Mut7-C ubiq 24.0 1.5E+02 0.0034 23.6 4.5 45 219-266 30-74 (81)
87 PTZ00301 uridine kinase; Provi 20.8 43 0.00093 31.7 0.8 60 206-273 4-66 (210)
88 PF11976 Rad60-SLD: Ubiquitin- 20.6 1.4E+02 0.0031 22.4 3.6 48 203-253 1-53 (72)
No 1
>PLN02908 threonyl-tRNA synthetase
Probab=100.00 E-value=2.4e-46 Score=409.75 Aligned_cols=239 Identities=30% Similarity=0.516 Sum_probs=217.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcC--cceeEEEEeeCCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEee
Q psy12008 175 SSNIVQKQNDIFNKEFKRQQNAVGR--IEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD 252 (458)
Q Consensus 175 ~~~~~~~~~~l~e~l~~~q~~~i~~--~~~i~v~~~~~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~d 252 (458)
.|.++.+|+++|++++++|.++++. .++|+|++ +||++.+++++.|||.+||++++..++..+++|+|||+ +||
T Consensus 22 ~~~~~~~r~~~f~~~~~~~~~~~~~~~~~~i~i~~---~dg~~~~~~~~~tt~~~ia~~i~~~~~~~~v~a~Vng~-l~d 97 (686)
T PLN02908 22 LSAVIKKRIELFEKIQARQLARLESAGGDPIKVTL---PDGAVKDGKKWVTTPMDIAKEISKGLANSALIAQVDGV-LWD 97 (686)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhhccCCceEEEe---CCCceEeecCCCCCHHHHHHHhCccchhhcEEEEECCE-Eee
Confidence 4579999999999999999999984 46677775 67889999987789999999999999999999999999 999
Q ss_pred cccccccccccceecccCCCCcchhhHHHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccC-CcEEEEEecCCCCCCCC
Q psy12008 253 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKS-GSFVYDVQLSGVDNWKP 331 (458)
Q Consensus 253 L~~pl~~d~~ve~l~~~~~~g~~~~~~y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~-ggfy~d~~~~~~~~~~l 331 (458)
|++|+++||+|+|++|++++| +++||||++|||++|++++|+ +++. .||+++. +|||||+.++ +.++
T Consensus 98 L~~~l~~d~~le~l~~~~~eg---~~~y~hS~ahlL~~A~~~~~~--~~l~----ig~~i~~~~Gfy~d~~~~---~~~~ 165 (686)
T PLN02908 98 MTRPLEGDCKLKLFKFDDDEG---RDTFWHSSAHILGEALELEYG--CKLC----IGPCTTRGEGFYYDAFYG---DRTL 165 (686)
T ss_pred cCccccCCCeeEEeccccHHH---HHHHHHHHHHHHHHHHHHHhC--CeEE----ecCccccCCcEEEEeecC---CCCC
Confidence 999999999999999999999 899999999999999999995 4554 4777861 4899999865 1479
Q ss_pred CHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhhCcccccccccccccCCCCeEEEEEECCeEeeeCCCCccCcCc
Q psy12008 332 TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNH 411 (458)
Q Consensus 332 t~edl~~Ie~~m~~iI~~~~pi~~~~vs~eeA~~~F~~~~~K~~ll~~~~~~~~~~~v~iy~~g~~~D~c~Gphv~~Tg~ 411 (458)
|++|+++|+++|+++|++++||++..|+++||+++|+++++|+++++.+++ ++.|++|+||+|+|+|+||||||||+
T Consensus 166 t~edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA~e~F~~~~~K~~ll~~~~~---~~~v~vY~~g~~~D~c~Gphv~sTg~ 242 (686)
T PLN02908 166 NEEDFKPIEARAEKAVKEKQPFERIEVTREEALEMFSENKFKVEIINDLPE---DATITVYRCGPLVDLCRGPHIPNTSF 242 (686)
T ss_pred CHHHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHhhCCcHHHHHhhCCC---CCeeEEEEECCEEEecCCCCCCCCCc
Confidence 999999999999999999999999999999999999999999999987653 56799999999999999999999999
Q ss_pred cCcEEEEeecceEEeeCCCcc
Q psy12008 412 LGRCTIAAVSFRFFLSPPSCL 432 (458)
Q Consensus 412 I~~f~l~~~~~g~~l~~p~~~ 432 (458)
||.|+|+++++|||||..+..
T Consensus 243 ik~f~l~~~~~~~~lg~~~~~ 263 (686)
T PLN02908 243 VKAFACLKASSAYWRGDVDRE 263 (686)
T ss_pred cceeEEEEecceEEcCCCcch
Confidence 999999999999999987653
No 2
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6e-39 Score=350.25 Aligned_cols=209 Identities=23% Similarity=0.430 Sum_probs=190.3
Q ss_pred eEEEEeeCCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceecccCCCCcchhhHHHh
Q psy12008 203 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 282 (458)
Q Consensus 203 i~v~~~~~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~~~~~~g~~~~~~y~h 282 (458)
+.|++ ++|++.+++.|+ |+.+||+.++..+...+++|+|||+ ++||++|+++||+|+|+++++++| +++|||
T Consensus 6 i~i~~---~~~~~~~~~~g~-t~~~ia~~~~~~~~~~iv~a~vn~~-l~dL~~~i~~d~~i~fv~~~~~~g---~~iy~h 77 (639)
T PRK12444 6 IEIKF---PDGSVKEFVKGI-TLEEIAGSISSSLKKKAVAGKVNDK-LYDLRRNLEEDAEVEIITIDSNEG---VEIARH 77 (639)
T ss_pred eEEEe---CCCCEEEecCCC-CHHHHHHHhhhhcchheEEEEECCE-EEEcCcccCCCCeEEEecCCChHH---HHHHHH
Confidence 44554 578889999995 9999999999988999999999999 999999999999999999999999 899999
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCHHH
Q psy12008 283 SCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDL 362 (458)
Q Consensus 283 S~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~edl~~Ie~~m~~iI~~~~pi~~~~vs~ee 362 (458)
|++|||++|++++||+ .++.+ |+++++ ||||||+.+ .++|++++.+||++|+++|++|+||++.+++++|
T Consensus 78 S~~hlL~~A~~~~~~~-~~~~i----~~~~~~-g~y~d~~~~----~~it~edl~~Ie~~m~eiI~~~~pI~~~~v~~ee 147 (639)
T PRK12444 78 SAAHILAQAVKRLYGD-VNLGV----GPVIEN-GFYYDMDLP----SSVNVEDLRKIEKEMKKIINENIKIERVEVSREE 147 (639)
T ss_pred HHHHHHHHHHHHHcCC-cEEEe----CCcCCC-eEEEEEeCC----CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHH
Confidence 9999999999999998 66654 666664 899999876 5799999999999999999999999999999999
Q ss_pred HHHHhhh--CcccccccccccccCCCCeEEEEEECCeEeeeCCCCccCcCccCcEEEEeecceEEeeCCCcc
Q psy12008 363 AEALFEH--NKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVSFRFFLSPPSCL 432 (458)
Q Consensus 363 A~~~F~~--~~~K~~ll~~~~~~~~~~~v~iy~~g~~~D~c~Gphv~~Tg~I~~f~l~~~~~g~~l~~p~~~ 432 (458)
|+++|++ +++|++|++..+. .+.|++|+||+|+|+|+||||||||+|+.|+|+++++|||+++.+.+
T Consensus 148 A~~~F~~~~~~~K~~ll~~~~~---~~~v~iy~~~~~~D~c~G~hv~sTg~ik~f~l~~~~~g~~~g~~~~~ 216 (639)
T PRK12444 148 AAKLFQEMNDRLKLELLEAIPS---GESITLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSGAYWRGDSNNQ 216 (639)
T ss_pred HHHHHhhcCCchHHHHHhcCCC---CCeEEEEEECCEEEEcCCcCCCCCCCCceeEEEEEcceEEcCCCCCc
Confidence 9999997 6789999987652 46799999999999999999999999999999999999999998654
No 3
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6e-37 Score=335.19 Aligned_cols=205 Identities=23% Similarity=0.413 Sum_probs=187.8
Q ss_pred CCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceecccCCCCcchhhHHHhhHHHHHH
Q psy12008 210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLG 289 (458)
Q Consensus 210 ~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~~~~~~g~~~~~~y~hS~~~lL~ 289 (458)
.++|..++++.|+ |+.++|+.++...+..+++|+|||. ++||+++++.||+|+|+++++.+| +++||||++|||+
T Consensus 6 ~~~g~~~~~~~gt-t~~dia~~~~~~~~~~~v~a~vng~-l~dL~~~l~~d~~Vefi~~~~~~g---~~~y~hS~~hll~ 80 (638)
T PRK00413 6 LPDGSVREFEAGV-TVADVAASISPGLAKAAVAGKVNGE-LVDLSTPIEEDASLEIITAKDEEG---LEIIRHSAAHLLA 80 (638)
T ss_pred eCCCCEEEeCCCC-CHHHHHHHhhhhchhheEEEEECCE-EeeCCccccCCCceeeeeccchhh---HHHHhhhHHHHHH
Confidence 3578888999995 9999999999988899999999999 999999999999999999999999 8999999999999
Q ss_pred HHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhh
Q psy12008 290 SVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH 369 (458)
Q Consensus 290 ~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~edl~~Ie~~m~~iI~~~~pi~~~~vs~eeA~~~F~~ 369 (458)
+|++++||+ .++.+ |+++++ ||||||+.+ .++|++++++||++|+++|++|+||++..++++||.++|++
T Consensus 81 ~A~~~~~~~-~~~~~----~~~~~~-g~y~d~~~~----~~lt~e~l~~Ie~~m~~iI~~~~pi~~~~v~~~eA~~~f~~ 150 (638)
T PRK00413 81 QAVKRLYPD-AKLTI----GPVIEN-GFYYDFDRE----RPFTPEDLEAIEKEMKEIIKENYPIEREVVSREEAIELFKD 150 (638)
T ss_pred HHHHHHcCC-ceEEE----CCccCC-eEEEEEeCC----CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHh
Confidence 999999997 66654 555665 899999876 68999999999999999999999999999999999999998
Q ss_pred --CcccccccccccccCCCCeEEEEEECCeEeeeCCCCccCcCccCcEEEEeecceEEeeCCCcc
Q psy12008 370 --NKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVSFRFFLSPPSCL 432 (458)
Q Consensus 370 --~~~K~~ll~~~~~~~~~~~v~iy~~g~~~D~c~Gphv~~Tg~I~~f~l~~~~~g~~l~~p~~~ 432 (458)
+++|++|++.++. ++.|++|+||+|+|+|+||||||||+|+.|+|.++++|||++.....
T Consensus 151 ~~~~~k~~ll~~~~~---~~~v~iy~~~~~~d~c~G~hv~~Tg~i~~f~i~~~~~g~~l~~~~~~ 212 (638)
T PRK00413 151 RGEPYKVELIEEIPE---DEEISLYRQGEFVDLCRGPHVPSTGKIKAFKLLKVAGAYWRGDSKNK 212 (638)
T ss_pred cCCccHHHHhhcCCC---CCeEEEEEECCEEEECCCCCCCcccCCceeEEEEEcceEEcCCCcch
Confidence 6789999987653 45899999999999999999999999999999999999999987654
No 4
>PLN02908 threonyl-tRNA synthetase
Probab=99.98 E-value=3.1e-32 Score=298.64 Aligned_cols=180 Identities=23% Similarity=0.314 Sum_probs=155.4
Q ss_pred CcCCCcccCCCccC--CcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhhccccccccc
Q psy12008 2 IFKNDVRGKVSLKS--GSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIP 79 (458)
Q Consensus 2 ~~~~~~~~~~~~~~--~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~~~~K~~li~ 79 (458)
+| ++.+..+|+++ +|||||+.++. .++|++|+++||++|+++|++++||++..|+++||+++|+++++|++|++
T Consensus 137 ~~-~~~l~ig~~i~~~~Gfy~d~~~~~---~~~t~edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA~e~F~~~~~K~~ll~ 212 (686)
T PLN02908 137 EY-GCKLCIGPCTTRGEGFYYDAFYGD---RTLNEEDFKPIEARAEKAVKEKQPFERIEVTREEALEMFSENKFKVEIIN 212 (686)
T ss_pred Hh-CCeEEecCccccCCcEEEEeecCC---CCCCHHHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHhhCCcHHHHHh
Confidence 35 34344555566 99999998653 27999999999999999999999999999999999999999999999998
Q ss_pred cccccCCCCeEEEEEECCeEeeecCcCccCccccccccccceeeEeecCC----------ceEEEeeccCcccccchhHH
Q psy12008 80 SIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAG----------LFYRFQGVALPKSIKGFIPS 149 (458)
Q Consensus 80 ~~~~~~~~~~v~vy~~g~~~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~~g----------~~~Ri~g~s~p~~~~~~~~~ 149 (458)
.++ +.+.|++|+||+|+|+|+||||||||+|+ .|+|.++++ .++||||+|||++. +|++
T Consensus 213 ~~~---~~~~v~vY~~g~~~D~c~Gphv~sTg~ik------~f~l~~~~~~~~lg~~~~~~lqRi~G~sfp~~~--~l~~ 281 (686)
T PLN02908 213 DLP---EDATITVYRCGPLVDLCRGPHIPNTSFVK------AFACLKASSAYWRGDVDRESLQRVYGISFPDKK--LLKE 281 (686)
T ss_pred hCC---CCCeeEEEEECCEEEecCCCCCCCCCccc------eeEEEEecceEEcCCCcchhhEEEeeeccCChH--HHHH
Confidence 875 35679999999999999999999999999 677766654 45699999999999 9999
Q ss_pred HHHhccchhhhcchhhhhhhh---------hcCCCHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12008 150 WMNMGLSSIEAGKSDIFLVIR---------LGQISSNIVQKQNDIFNKEFKRQQNAVGR 199 (458)
Q Consensus 150 ~~~~~~~~ee~~~rdh~~i~~---------~~~l~~~~~~~~~~l~e~l~~~q~~~i~~ 199 (458)
|++++ |||++||||.|+. .++++++|++++..|+++|.+.-++...+
T Consensus 282 ~~~~~---~e~~~rdH~~lg~~~~lf~~~~~~~G~~~~lP~g~~i~~~l~~~~~~~~~~ 337 (686)
T PLN02908 282 YKHRI---EEAKKRDHRLLGQKQELFFFHELSPGSCFFLPHGARIYNKLMDFIREQYWE 337 (686)
T ss_pred HHhhh---hhccccCHHHHHHhcCCeeecCCCCcceEEechHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999985 23334568899999999999998887753
No 5
>PLN02837 threonine-tRNA ligase
Probab=99.97 E-value=2.6e-30 Score=280.03 Aligned_cols=177 Identities=20% Similarity=0.258 Sum_probs=157.7
Q ss_pred CcCCCcccCCCccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhh--ccccccccc
Q psy12008 2 IFKNDVRGKVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH--NKYKLEQIP 79 (458)
Q Consensus 2 ~~~~~~~~~~~~~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~--~~~K~~li~ 79 (458)
+||+.....++.+++||||||.. . ++|++|+.+||++|+++|++|+||++..++++||+++|.+ +++|.+|++
T Consensus 61 l~~~~~~~ig~~~~~g~y~D~~~-~----~lt~edl~~IEk~m~~iI~~n~pI~~~~v~~eEA~~~f~~~~~~~k~~Ll~ 135 (614)
T PLN02837 61 LFPDAKVTIGPWIENGFYYDFDM-E----PLTDKDLKRIKKEMDRIISRNLPLVREEVSREEAQKRIMAINEPYKLEILE 135 (614)
T ss_pred HcCCcEEEECCccCCCEEEEecC-C----CCCHHHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHHHHcCCchhHHHhc
Confidence 48888888888899999999985 3 7999999999999999999999999999999999999986 789999987
Q ss_pred cccccCCCCeEEEEEECC-eEeeecCcCccCcccc--ccccccceeeEeecCCceE----------EEeeccCcccccch
Q psy12008 80 SIVQQSIDGKVIVYRIKD-HIDISRGPMMSNTNHL--GRCTIAAAQQVETDAGLFY----------RFQGVALPKSIKGF 146 (458)
Q Consensus 80 ~~~~~~~~~~v~vy~~g~-~~D~c~Gphv~~Tg~i--~~~~i~~~f~l~~~~g~~~----------Ri~g~s~p~~~~~~ 146 (458)
... .+.|++|+||| |+|+|+||||||||+| + +|+|.+.+|+|| ||||+|||++. +
T Consensus 136 ~~~----~~~Iriy~ig~~~~D~c~GpHv~sTg~I~~~------~~kl~~~~g~ywrg~~~~~~l~ri~g~~~~~~~--~ 203 (614)
T PLN02837 136 GIK----EEPITIYHIGEEWWDLCAGPHVERTGKINKK------AVELESVAGAYWRGDEKNQMLQRIYGTAWESEE--Q 203 (614)
T ss_pred cCC----CCeEEEEEECCeEEEecCCCCcccccccccc------eEEEEEeehhhhcccccCcceEEEEEEecCCHH--H
Confidence 763 57899999997 8999999999999999 6 899999988876 69999999999 9
Q ss_pred hHHHHHhccchhhhcchhhhhhhhh----------cCCCHHHHHHHHHHHHHHHHHHHHHhc
Q psy12008 147 IPSWMNMGLSSIEAGKSDIFLVIRL----------GQISSNIVQKQNDIFNKEFKRQQNAVG 198 (458)
Q Consensus 147 ~~~~~~~~~~~ee~~~rdh~~i~~~----------~~l~~~~~~~~~~l~e~l~~~q~~~i~ 198 (458)
|++|++++ |||++||||.|+.- |+..+.|.+.+..|..+|.+.-++...
T Consensus 204 l~~~~~~~---~e~~~rdH~~lg~~l~lf~~~~~~g~G~~~~~p~G~~l~~~L~~~~~~~~~ 262 (614)
T PLN02837 204 LKAYLHFK---EEAKRRDHRRLGQDLDLFSIQDDAGGGLVFWHPKGAIVRHIIEDSWKKMHF 262 (614)
T ss_pred HHHHHHHH---HHhhhCCHHHHHHHcCCcccCcCcCCcceEEechHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999872 223345889999999999888777654
No 6
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=6.3e-29 Score=271.58 Aligned_cols=179 Identities=23% Similarity=0.329 Sum_probs=155.7
Q ss_pred CcCCCcccCCCccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhh--ccccccccc
Q psy12008 2 IFKNDVRGKVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH--NKYKLEQIP 79 (458)
Q Consensus 2 ~~~~~~~~~~~~~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~--~~~K~~li~ 79 (458)
+||+.....++.+++||||||..+. ++|++|+.+||++|+++|++|+||++..++++||+++|++ +++|++|++
T Consensus 90 ~~~~~~~~i~~~~~~g~y~d~~~~~----~it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~~F~~~~~~~K~~ll~ 165 (639)
T PRK12444 90 LYGDVNLGVGPVIENGFYYDMDLPS----SVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLFQEMNDRLKLELLE 165 (639)
T ss_pred HcCCcEEEeCCcCCCeEEEEEeCCC----CCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHhhcCCchHHHHHh
Confidence 4787766667778999999998653 7999999999999999999999999999999999999997 889999998
Q ss_pred cccccCCCCeEEEEEECCeEeeecCcCccCccccccccccceeeEeecCCceE----------EEeeccCcccccchhHH
Q psy12008 80 SIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFY----------RFQGVALPKSIKGFIPS 149 (458)
Q Consensus 80 ~~~~~~~~~~v~vy~~g~~~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~~g~~~----------Ri~g~s~p~~~~~~~~~ 149 (458)
..+ ..+.|++|+||+|+|+|+||||||||+|+ .|+|.++++++| ||||+|||++. ++++
T Consensus 166 ~~~---~~~~v~iy~~~~~~D~c~G~hv~sTg~ik------~f~l~~~~~g~~~g~~~~~~l~Ri~g~a~~~~~--~l~~ 234 (639)
T PRK12444 166 AIP---SGESITLYKQGEFVDLCRGPHLPSTGYLK------AFQLTHVSGAYWRGDSNNQVLQRIYGVAFSSQK--ELEE 234 (639)
T ss_pred cCC---CCCeEEEEEECCEEEEcCCcCCCCCCCCc------eeEEEEEcceEEcCCCCCcceEEEEEEecCCHH--HHHH
Confidence 865 23679999999999999999999999999 788877765554 89999999999 9999
Q ss_pred HHHhccchhhhcchhhhhhhhhcC---------CCHHHHHHHHHHHHHHHHHHHHHhc
Q psy12008 150 WMNMGLSSIEAGKSDIFLVIRLGQ---------ISSNIVQKQNDIFNKEFKRQQNAVG 198 (458)
Q Consensus 150 ~~~~~~~~ee~~~rdh~~i~~~~~---------l~~~~~~~~~~l~e~l~~~q~~~i~ 198 (458)
|++++ |||++||||.++.--+ +.+.|.+....+++.+.+.-.+...
T Consensus 235 ~~~~~---~~~~~~dH~~l~~~~~l~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~ 289 (639)
T PRK12444 235 YLHFV---EEAAKRNHRKLGKELELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289 (639)
T ss_pred HHHHH---HHhccCCHHHHHHHcCCcccccccCcceEEeeCHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999987422 2235788888888888877777664
No 7
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=3.1e-28 Score=263.50 Aligned_cols=178 Identities=24% Similarity=0.283 Sum_probs=156.6
Q ss_pred CcCCCcccCCCccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhhccccccccccc
Q psy12008 2 IFKNDVRGKVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSI 81 (458)
Q Consensus 2 ~~~~~~~~~~~~~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~~~~K~~li~~~ 81 (458)
+||+.....++..++||||||..+. ++|++|+.+||++|+++|++|+||++..++++||.++|+++++|.+|++..
T Consensus 24 ~~~~~~~~~~~~~~~g~~~d~~~~~----~it~e~l~~Ie~~m~~lI~~~~pi~~~~v~~eeA~~~f~~~~~k~~l~~~~ 99 (575)
T PRK12305 24 LFPDAKLGIGPPIEDGFYYDFDVPE----PFTPEDLKKIEKKMKKIIKRGLPFEREEVSREEAREEFANEPYKLELIDDI 99 (575)
T ss_pred HcCCceEEeCCCcCCeEEEEeeCCC----CCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHhCCcChhHHHhhhhc
Confidence 4888777888888999999998754 799999999999999999999999999999999999999999999999887
Q ss_pred cccCCCCeEEEEEECCeEeeecCcCccCccccccccccceeeEeecCCc----------eEEEeeccCcccccchhHHHH
Q psy12008 82 VQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGL----------FYRFQGVALPKSIKGFIPSWM 151 (458)
Q Consensus 82 ~~~~~~~~v~vy~~g~~~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~~g~----------~~Ri~g~s~p~~~~~~~~~~~ 151 (458)
+ .+.|++|+||||+|+|+||||||||+|+ .|+|.+++++ ++||+|++||++. ++++|+
T Consensus 100 ~----~~~vri~~ig~~~d~c~Gthv~~T~~i~------~f~i~~~~~~~~~~~~~~~~l~Ri~g~~~~~~~--~l~~~~ 167 (575)
T PRK12305 100 P----EEGITIYDNGDFEDLCRGPHVPNTKFIK------AFKLTSVAGAYWRGDEKNPQLQRIYGTAWETKE--ELKEYL 167 (575)
T ss_pred C----CCeEEEEEECCEEEECCCCCCCCccCCc------eeEEEEEcceEECCCCCCcceEEEEEEecCCHH--HHHHHH
Confidence 5 4589999999999999999999999999 7777766554 4589999999999 999999
Q ss_pred Hhccchhhhcchhhhhhhhh----------cCCCHHHHHHHHHHHHHHHHHHHHHhc
Q psy12008 152 NMGLSSIEAGKSDIFLVIRL----------GQISSNIVQKQNDIFNKEFKRQQNAVG 198 (458)
Q Consensus 152 ~~~~~~ee~~~rdh~~i~~~----------~~l~~~~~~~~~~l~e~l~~~q~~~i~ 198 (458)
+.+ +|+++||||.++.- +.+.+.+.++...+.+++.+.-.+...
T Consensus 168 ~~~---~e~~~~dh~~l~~~~~l~~~~~~~~~G~~~~~p~~~~~~~~l~~~~~~~~~ 221 (575)
T PRK12305 168 KRL---EEAKKRDHRKLGKELDLFSFPDEIGPGLPVWHPKGAIIRREIEDYLRKEHL 221 (575)
T ss_pred HHH---HHhhhccHHHHHHhcCccccccccCCcceEEeccHHHHHHHHHHHHHHHHH
Confidence 999 99999999999763 222335889999999999888777654
No 8
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.7e-28 Score=259.83 Aligned_cols=172 Identities=24% Similarity=0.283 Sum_probs=151.9
Q ss_pred CcCCCcccCCCccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhhccccccccccc
Q psy12008 2 IFKNDVRGKVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSI 81 (458)
Q Consensus 2 ~~~~~~~~~~~~~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~~~~K~~li~~~ 81 (458)
.||+ +..+ |++++||||||+... ++|++|+.+||++|++++++++||++..+++++|++.|+ +||+++|+.+
T Consensus 44 l~p~-~~~g-p~ie~gfyyd~~~~~----~~~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~~f~--~yK~~~i~~~ 115 (589)
T COG0441 44 LYPD-VTIG-PVIEEGFYYDFDVKE----PITPEDLLKIEKEMKEIAKENLPIEREVVSREEARAPFG--PYKAELIDCK 115 (589)
T ss_pred hCCC-cccc-CcccceeEEeeccCC----CCCHHHHHHHHHHHHHHHHhcCceEEEEecHHHHHHHhh--hhHHHHHhcC
Confidence 5899 5554 889999999999764 799999999999999999999999999999999999999 9999999987
Q ss_pred cccCCCCeEEEEEECCeEeeecCcCccCccccccccccceeeEeecCCceE----------EEeeccCcccccchhHHHH
Q psy12008 82 VQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFY----------RFQGVALPKSIKGFIPSWM 151 (458)
Q Consensus 82 ~~~~~~~~v~vy~~g~~~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~~g~~~----------Ri~g~s~p~~~~~~~~~~~ 151 (458)
+ ..+++|+.|+|+|+|.|||+||||.| +|+|.+.+|+|| |+||++|+++. +++.|+
T Consensus 116 ~-----~~~s~y~~~~~~dlc~gph~~~t~~i-------~fkl~~~~~ayw~g~~~~~~l~riygta~~~~~--~l~~~l 181 (589)
T COG0441 116 G-----HPLSEYSQGEFVDLCRGPHVPSTGKI-------AFKLLKLAGAYWRGDENNEMLQRIYGTAFADKK--ELEAYL 181 (589)
T ss_pred C-----CCceeEecCccccccCCCCCCccceE-------EEEEEEecchhhccCCCCcceeEEeccccCCHH--HHHHHH
Confidence 4 78999999999999999999999999 377777766666 69999999999 999999
Q ss_pred Hhccchhhhcchhhhhhhh----------hcCCCHHHHHHHHHHHHHHHHHHHHHhc
Q psy12008 152 NMGLSSIEAGKSDIFLVIR----------LGQISSNIVQKQNDIFNKEFKRQQNAVG 198 (458)
Q Consensus 152 ~~~~~~ee~~~rdh~~i~~----------~~~l~~~~~~~~~~l~e~l~~~q~~~i~ 198 (458)
+++ |||++||||+++. .+++.+.|.+++..+++.|-+.-.....
T Consensus 182 ~~~---eea~krdHrklg~el~LF~~~~~~~~G~~~~~pkG~~ir~~le~y~~~~~~ 235 (589)
T COG0441 182 KRL---EEAKKRDHRKLGKELDLFSFSPEEGPGLPFWHPKGATIRNLLEDYVRTKLR 235 (589)
T ss_pred hhh---hhccCCchHhHHHhhcceeeccccCCcceEECCCcccHHHHHHHHHHHHHH
Confidence 999 9999999999976 3334456889999999998777666553
No 9
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.95 E-value=2.2e-27 Score=256.83 Aligned_cols=146 Identities=24% Similarity=0.423 Sum_probs=132.5
Q ss_pred CCCCcchhhHHHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHc
Q psy12008 270 DSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYE 349 (458)
Q Consensus 270 ~~~g~~~~~~y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~edl~~Ie~~m~~iI~~ 349 (458)
+.+| +++||||++|||++|++++||+ .++.+ |+++.+ ||||||+.+ .++|++++.+||++|+++|++
T Consensus 2 ~~~g---~~~~~hS~~hlL~~A~~~~~~~-~~~~~----~~~~~~-g~~~d~~~~----~~it~e~l~~Ie~~m~~lI~~ 68 (575)
T PRK12305 2 SPDG---LEVIRHSAAHVLAQAVQELFPD-AKLGI----GPPIED-GFYYDFDVP----EPFTPEDLKKIEKKMKKIIKR 68 (575)
T ss_pred CHHH---HHHHHHHHHHHHHHHHHHHcCC-ceEEe----CCCcCC-eEEEEeeCC----CCCCHHHHHHHHHHHHHHHhc
Confidence 4567 7999999999999999999997 56654 666665 799999876 579999999999999999999
Q ss_pred CCCeEEEEeCHHHHHHHhhhCcccccccccccccCCCCeEEEEEECCeEeeeCCCCccCcCccCcEEEEeecceEEeeCC
Q psy12008 350 AVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVSFRFFLSPP 429 (458)
Q Consensus 350 ~~pi~~~~vs~eeA~~~F~~~~~K~~ll~~~~~~~~~~~v~iy~~g~~~D~c~Gphv~~Tg~I~~f~l~~~~~g~~l~~p 429 (458)
|+||++..++++||+++|+.+++|.++++..+ .+.|++|+||+|+|+|+||||||||+|+.|+|+++++|||++..
T Consensus 69 ~~pi~~~~v~~eeA~~~f~~~~~k~~l~~~~~----~~~vri~~ig~~~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~ 144 (575)
T PRK12305 69 GLPFEREEVSREEAREEFANEPYKLELIDDIP----EEGITIYDNGDFEDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDE 144 (575)
T ss_pred CCCEEEEEecHHHHHHhCCcChhHHHhhhhcC----CCeEEEEEECCEEEECCCCCCCCccCCceeEEEEEcceEECCCC
Confidence 99999999999999999999899999998765 45899999999999999999999999999999999999999987
Q ss_pred Ccc
Q psy12008 430 SCL 432 (458)
Q Consensus 430 ~~~ 432 (458)
+..
T Consensus 145 ~~~ 147 (575)
T PRK12305 145 KNP 147 (575)
T ss_pred CCc
Confidence 654
No 10
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.94 E-value=1.3e-26 Score=253.88 Aligned_cols=179 Identities=23% Similarity=0.292 Sum_probs=155.4
Q ss_pred CcCCCcccCCCccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhh--ccccccccc
Q psy12008 2 IFKNDVRGKVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH--NKYKLEQIP 79 (458)
Q Consensus 2 ~~~~~~~~~~~~~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~--~~~K~~li~ 79 (458)
+||+.....++..++||||||..+. ++|++|+++||++|+++|++|+||++..++++||.++|++ +++|++|++
T Consensus 86 ~~~~~~~~~~~~~~~g~y~d~~~~~----~lt~e~l~~Ie~~m~~iI~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~ 161 (638)
T PRK00413 86 LYPDAKLTIGPVIENGFYYDFDRER----PFTPEDLEAIEKEMKEIIKENYPIEREVVSREEAIELFKDRGEPYKVELIE 161 (638)
T ss_pred HcCCceEEECCccCCeEEEEEeCCC----CCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCCccHHHHhh
Confidence 4787777777788999999998653 7999999999999999999999999999999999999998 889999998
Q ss_pred cccccCCCCeEEEEEECCeEeeecCcCccCccccccccccceeeEeecCCce----------EEEeeccCcccccchhHH
Q psy12008 80 SIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLF----------YRFQGVALPKSIKGFIPS 149 (458)
Q Consensus 80 ~~~~~~~~~~v~vy~~g~~~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~~g~~----------~Ri~g~s~p~~~~~~~~~ 149 (458)
.++ ..+.|++|+||+|+|+|+||||||||+|+ .|+|.+++|++ .||+|++||++. ++.+
T Consensus 162 ~~~---~~~~v~iy~~~~~~d~c~G~hv~~Tg~i~------~f~i~~~~~g~~l~~~~~~~l~Ri~g~~~~~~~--~l~~ 230 (638)
T PRK00413 162 EIP---EDEEISLYRQGEFVDLCRGPHVPSTGKIK------AFKLLKVAGAYWRGDSKNKMLQRIYGTAFADKK--ELDA 230 (638)
T ss_pred cCC---CCCeEEEEEECCEEEECCCCCCCcccCCc------eeEEEEEcceEEcCCCcchheEEEEeeecCCHH--HHHH
Confidence 875 24589999999999999999999999999 77777775544 489999999999 9999
Q ss_pred HHHhccchhhhcchhhhhhhh-h-----cCC---CHHHHHHHHHHHHHHHHHHHHHhc
Q psy12008 150 WMNMGLSSIEAGKSDIFLVIR-L-----GQI---SSNIVQKQNDIFNKEFKRQQNAVG 198 (458)
Q Consensus 150 ~~~~~~~~ee~~~rdh~~i~~-~-----~~l---~~~~~~~~~~l~e~l~~~q~~~i~ 198 (458)
|++++ |||++|||+.++. + .+. .+.|+++...+++++.+.-.+...
T Consensus 231 ~~~~~---~e~~~~~h~~l~~~~~~~~~~~~~~G~~~~lp~~~~~~~~i~~~~~~~~~ 285 (638)
T PRK00413 231 YLHRL---EEAKKRDHRKLGKELDLFHFQEEAPGLPFWHPKGWTIRRELERYIRRKLR 285 (638)
T ss_pred HHHHH---HHhccccHHHHHHhcCEEEecCCCCcceEEcccHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999854 2 222 235889999999999888777654
No 11
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.94 E-value=1.6e-26 Score=249.56 Aligned_cols=179 Identities=22% Similarity=0.240 Sum_probs=153.3
Q ss_pred CcCCCcccCCCccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhh-hcccccccccc
Q psy12008 2 IFKNDVRGKVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFE-HNKYKLEQIPS 80 (458)
Q Consensus 2 ~~~~~~~~~~~~~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~-~~~~K~~li~~ 80 (458)
+||+.....++.+++||||||.... ++|++++.+||++|+++|++|+||++..++++||.++|+ .++||.+|+++
T Consensus 15 ~~~~~~~~~~~~i~~g~~~df~~~~----~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~~~~~~k~~Ll~~ 90 (563)
T TIGR00418 15 LYPDVKLAIGPVVEDGFYYDFELDR----SFTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFKVLEPYKLELLDE 90 (563)
T ss_pred HcCCcEEEEcCCcCCCceecccCCC----CCCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHHhccChhHHHHHhc
Confidence 4777766666777999999998553 799999999999999999999999999999999999998 58899999988
Q ss_pred ccccCCCCeEEEEEECC-eEeeecCcCccCccccccccccceeeEeecCCc----------eEEEeeccCcccccchhHH
Q psy12008 81 IVQQSIDGKVIVYRIKD-HIDISRGPMMSNTNHLGRCTIAAAQQVETDAGL----------FYRFQGVALPKSIKGFIPS 149 (458)
Q Consensus 81 ~~~~~~~~~v~vy~~g~-~~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~~g~----------~~Ri~g~s~p~~~~~~~~~ 149 (458)
+. ..+.|++|+||+ |+|+|+||||||||+|+ .|+|.+++++ ++|++|+|||++. +|++
T Consensus 91 ~~---~~~~v~vy~~g~~~~d~~~G~~v~~Tg~i~------~f~l~~~~~g~~l~~~~~~~l~Ri~g~~~~~~~--~l~~ 159 (563)
T TIGR00418 91 IP---NGVKRTPYGWGKAFVDLCKGPHLPNTSFIK------AFKLEKVAGAYWRGDSKNKMLQRIYGTAWADKK--QLAA 159 (563)
T ss_pred CC---CCCeEEEEEeCCEEEEEcCCCcCCCCCCCc------eeEEEEeccceEeEcCCCCceEeeeeccCCCHH--HHHH
Confidence 62 257899999999 99999999999999999 6766665444 4589999999999 9999
Q ss_pred HHHhccchhhhcchhhhhhhhhcCC----------CHHHHHHHHHHHHHHHHHHHHHhc
Q psy12008 150 WMNMGLSSIEAGKSDIFLVIRLGQI----------SSNIVQKQNDIFNKEFKRQQNAVG 198 (458)
Q Consensus 150 ~~~~~~~~ee~~~rdh~~i~~~~~l----------~~~~~~~~~~l~e~l~~~q~~~i~ 198 (458)
|++++ |||++||||.|+.-..+ ...+.+....+++++.+.-++...
T Consensus 160 ~~~~~---~~~~~~dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~ 215 (563)
T TIGR00418 160 YLLRL---EEAKKRDHRKLGKELELFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQKQI 215 (563)
T ss_pred HHHhh---hhhhcCCHHHHHHhCCCcccCcccCCcceEEeccHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999652222 224779999999999888777654
No 12
>PLN02837 threonine-tRNA ligase
Probab=99.94 E-value=2.7e-26 Score=248.79 Aligned_cols=155 Identities=19% Similarity=0.352 Sum_probs=138.8
Q ss_pred ccccceecccCCCCcchhhHHHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCHHHHHHH
Q psy12008 260 DCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVL 339 (458)
Q Consensus 260 d~~ve~l~~~~~~g~~~~~~y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~edl~~I 339 (458)
...|+++++++.+| ..++|||++|||++|++++||+ .++.+ |+++++ ||||||+. .++|++|+.+|
T Consensus 29 ~~~~~~~~~~~~~~---~~~~~HSa~HLL~~Av~~l~~~-~~~~i----g~~~~~-g~y~D~~~-----~~lt~edl~~I 94 (614)
T PLN02837 29 PERVVLPTNESSEK---LLKIRHTCAHVMAMAVQKLFPD-AKVTI----GPWIEN-GFYYDFDM-----EPLTDKDLKRI 94 (614)
T ss_pred CceEEEEeccChhh---HHHHHHHHHHHHHHHHHHHcCC-cEEEE----CCccCC-CEEEEecC-----CCCCHHHHHHH
Confidence 45789999999998 7899999999999999999997 66654 777775 79999974 37999999999
Q ss_pred HHHHHHHHHcCCCeEEEEeCHHHHHHHhhh--CcccccccccccccCCCCeEEEEEECC-eEeeeCCCCccCcCcc--Cc
Q psy12008 340 SAEMVKLAYEAVPFERLSISQDLAEALFEH--NKYKLEQIPSIVQQSIDGKVIVYRIKD-HIDISRGPMMSNTNHL--GR 414 (458)
Q Consensus 340 e~~m~~iI~~~~pi~~~~vs~eeA~~~F~~--~~~K~~ll~~~~~~~~~~~v~iy~~g~-~~D~c~Gphv~~Tg~I--~~ 414 (458)
|++|+++|++|+||++..++++||+++|.. +++|.+|++... .+.|++|+||| |+|+|+||||||||+| +.
T Consensus 95 Ek~m~~iI~~n~pI~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~~----~~~Iriy~ig~~~~D~c~GpHv~sTg~I~~~~ 170 (614)
T PLN02837 95 KKEMDRIISRNLPLVREEVSREEAQKRIMAINEPYKLEILEGIK----EEPITIYHIGEEWWDLCAGPHVERTGKINKKA 170 (614)
T ss_pred HHHHHHHHHcCCCEEEEEecHHHHHHHHHHcCCchhHHHhccCC----CCeEEEEEECCeEEEecCCCCcccccccccce
Confidence 999999999999999999999999999986 578888887653 56899999997 8999999999999999 99
Q ss_pred EEEEeecceEEeeCCCcc
Q psy12008 415 CTIAAVSFRFFLSPPSCL 432 (458)
Q Consensus 415 f~l~~~~~g~~l~~p~~~ 432 (458)
|+|+..+++||+++.+..
T Consensus 171 ~kl~~~~g~ywrg~~~~~ 188 (614)
T PLN02837 171 VELESVAGAYWRGDEKNQ 188 (614)
T ss_pred EEEEEeehhhhcccccCc
Confidence 999999999999998754
No 13
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.7e-26 Score=242.09 Aligned_cols=161 Identities=22% Similarity=0.348 Sum_probs=142.8
Q ss_pred eEEEEECCeEEeecccccccccccceecccCCCCcchhhHHHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccCCcEEE
Q psy12008 240 SVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVY 319 (458)
Q Consensus 240 ~v~a~vng~~~~dL~~pl~~d~~ve~l~~~~~~g~~~~~~y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~ 319 (458)
++++.+||. +|+.. ..++..++ +| ..+.|||+||||+.|++++||+ .. .||.+++ ||||
T Consensus 2 ~~~~~~~~~--~~~~~-------~~~~~~~~-~~---~~~~rhs~ah~l~~av~~l~p~-~~------~gp~ie~-gfyy 60 (589)
T COG0441 2 ALAIHVDGE--LDLKD-------EIITAEDE-EG---LEIIRHSCAHVLAQAVKRLYPD-VT------IGPVIEE-GFYY 60 (589)
T ss_pred ceEEEcccc--eeccc-------cccCccCc-cc---hhhhhhHHHHHHHHHHHHhCCC-cc------ccCcccc-eeEE
Confidence 578899995 66654 33444555 77 7899999999999999999998 33 3888886 8999
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhhCcccccccccccccCCCCeEEEEEECCeEe
Q psy12008 320 DVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHID 399 (458)
Q Consensus 320 d~~~~~~~~~~lt~edl~~Ie~~m~~iI~~~~pi~~~~vs~eeA~~~F~~~~~K~~ll~~~~~~~~~~~v~iy~~g~~~D 399 (458)
|++.+ .++|++|+.+||++|++++++++||++..+++++|++.|+ +||+++|+.++ ..+++|+.|+|.|
T Consensus 61 d~~~~----~~~~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~~f~--~yK~~~i~~~~-----~~~s~y~~~~~~d 129 (589)
T COG0441 61 DFDVK----EPITPEDLLKIEKEMKEIAKENLPIEREVVSREEARAPFG--PYKAELIDCKG-----HPLSEYSQGEFVD 129 (589)
T ss_pred eeccC----CCCCHHHHHHHHHHHHHHHHhcCceEEEEecHHHHHHHhh--hhHHHHHhcCC-----CCceeEecCcccc
Confidence 99987 5699999999999999999999999999999999999999 89999998775 5799999999999
Q ss_pred eeCCCCccCcCccCcEEEEeecceEEeeCCCccc
Q psy12008 400 ISRGPMMSNTNHLGRCTIAAVSFRFFLSPPSCLL 433 (458)
Q Consensus 400 ~c~Gphv~~Tg~I~~f~l~~~~~g~~l~~p~~~~ 433 (458)
+|.|||+||||.| .|++++.+++||.++++.+.
T Consensus 130 lc~gph~~~t~~i-~fkl~~~~~ayw~g~~~~~~ 162 (589)
T COG0441 130 LCRGPHVPSTGKI-AFKLLKLAGAYWRGDENNEM 162 (589)
T ss_pred ccCCCCCCccceE-EEEEEEecchhhccCCCCcc
Confidence 9999999999999 99999999999999998763
No 14
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.91 E-value=5e-24 Score=230.23 Aligned_cols=139 Identities=24% Similarity=0.403 Sum_probs=125.1
Q ss_pred HhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCH
Q psy12008 281 WRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQ 360 (458)
Q Consensus 281 ~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~edl~~Ie~~m~~iI~~~~pi~~~~vs~ 360 (458)
|||++|||++|++++||+ ..+.+ |+++++ ||||||..+ .++|++++.+|+++|+++|++++||++..+++
T Consensus 1 ~HS~~hLl~~Al~~~~~~-~~~~~----~~~i~~-g~~~df~~~----~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~ 70 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPD-VKLAI----GPVVED-GFYYDFELD----RSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSL 70 (563)
T ss_pred CChHHHHHHHHHHHHcCC-cEEEE----cCCcCC-CceecccCC----CCCCHHHHHHHHHHHHHHHhcCCCEEEEEECH
Confidence 899999999999999997 55654 666765 799999865 67999999999999999999999999999999
Q ss_pred HHHHHHhh-hCcccccccccccccCCCCeEEEEEECC-eEeeeCCCCccCcCccCcEEEEeecceEEeeCCCcc
Q psy12008 361 DLAEALFE-HNKYKLEQIPSIVQQSIDGKVIVYRIKD-HIDISRGPMMSNTNHLGRCTIAAVSFRFFLSPPSCL 432 (458)
Q Consensus 361 eeA~~~F~-~~~~K~~ll~~~~~~~~~~~v~iy~~g~-~~D~c~Gphv~~Tg~I~~f~l~~~~~g~~l~~p~~~ 432 (458)
+||.++|. .+++|.+|++.+.. .+.|++|+||+ |+|+|+||||||||+|+.|+|..+++||||++.+.+
T Consensus 71 eeA~~~f~~~~~~k~~Ll~~~~~---~~~v~vy~~g~~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~ 141 (563)
T TIGR00418 71 EEALEAFKVLEPYKLELLDEIPN---GVKRTPYGWGKAFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNK 141 (563)
T ss_pred HHHHHHHhccChhHHHHHhcCCC---CCeEEEEEeCCEEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCC
Confidence 99999998 56789999887621 57899999999 999999999999999999999999999999987654
No 15
>KOG1637|consensus
Probab=99.89 E-value=2.1e-24 Score=216.03 Aligned_cols=138 Identities=33% Similarity=0.605 Sum_probs=124.5
Q ss_pred CCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceecccCCCCcchhhHHHhhHHHHHH
Q psy12008 210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLG 289 (458)
Q Consensus 210 ~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~~~~~~g~~~~~~y~hS~~~lL~ 289 (458)
++||.+++..+|.|||++||.+ +..+++.+++++|||+ +|||++|++.|| +|+++|++++| .++||||+||+||
T Consensus 5 Lpdg~~~~~~~w~ttp~~ia~~-s~~la~~~~~~~vn~~-~~Dl~rp~e~~~-lell~f~~~~~---k~vfwhssahvlg 78 (560)
T KOG1637|consen 5 LPDGKVVEGVSWETTPYDIACQ-SKGLADDAVIAKVNGV-LWDLDRPLEGDC-LELLKFDDDEG---KDVFWHSSAHVLG 78 (560)
T ss_pred cCCcceeeeeeccCChhHHhhh-ccchhhhhHHHhhcCc-eeccCCcchhhH-HHHccCCCccc---ceeeeehhhhHhh
Confidence 7899999999999999999999 8899999999999999 999999999999 99999999999 6899999999999
Q ss_pred HHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhh
Q psy12008 290 SVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH 369 (458)
Q Consensus 290 ~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~edl~~Ie~~m~~iI~~~~pi~~~~vs~eeA~~~F~~ 369 (458)
.|+++.||+ +.|.||++++ |||||+ ++ .++.+|+..||.
T Consensus 79 ~a~e~~~g~------~lc~Gpp~~~-gf~yd~-~~-----~i~~~d~~~~e~---------------------------- 117 (560)
T KOG1637|consen 79 EALEQEYGA------HLCIGPPIEE-GFYYDM-LD-----EISSNDFPSIEA---------------------------- 117 (560)
T ss_pred HHHHHhcCe------eEeeCCCCcC-ceehhh-hc-----cccccccccccc----------------------------
Confidence 999999986 3467999986 899998 45 256665555443
Q ss_pred CcccccccccccccCCCCeEEEEEECCeEeeeCCCCccCcCccCcEEEEeecceEEeeC
Q psy12008 370 NKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVSFRFFLSP 428 (458)
Q Consensus 370 ~~~K~~ll~~~~~~~~~~~v~iy~~g~~~D~c~Gphv~~Tg~I~~f~l~~~~~g~~l~~ 428 (458)
|||++||.||.|++++.++.||++.
T Consensus 118 ----------------------------------phi~~tg~ika~k~~~nss~yw~~~ 142 (560)
T KOG1637|consen 118 ----------------------------------PHIRHTGKIKAFKILKNSSAYWEGD 142 (560)
T ss_pred ----------------------------------ccccccceeeeeeeeccchhhhccc
Confidence 9999999999999999999999875
No 16
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=99.79 E-value=1.5e-19 Score=192.45 Aligned_cols=121 Identities=15% Similarity=0.104 Sum_probs=104.6
Q ss_pred EeCHHHHHHHhhhccccccccccccccCCCCeEEEEEECCeEeeecC-cCccCccccccccccceeeEeecCC-------
Q psy12008 58 SISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRG-PMMSNTNHLGRCTIAAAQQVETDAG------- 129 (458)
Q Consensus 58 ~v~~eeA~~lF~~~~~K~~li~~~~~~~~~~~v~vy~~g~~~D~c~G-phv~~Tg~i~~~~i~~~f~l~~~~g------- 129 (458)
.++++||+++|+.|+||.++|+. +.|+ | ||.++|+|.| |||||||.|+ +|+|.+++|
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~-~~~~~~~~~~~ph~~~t~~~~------~fkl~~~~~~g~~~~~ 109 (545)
T PRK14799 45 SITLDEVKKAINENVLANVSIEN-------NQIV-Y-KGNKVSIIEDKVSISTNLNPK------YFEILNISTHHPNPNE 109 (545)
T ss_pred cccHHHHHHHHhcCcceeeEeec-------CcEE-E-ccCceeecCCCCCCCCCCCcc------eEEEEEeccCCCccCc
Confidence 46889999999999999999873 4444 4 9999999999 9999999999 888888755
Q ss_pred ceEEEeeccCcccccchhHHHHHhccchhhhcchhhhhhhhhcC----------CCHHHHHHHHHHHHHHHHHHHHHhc
Q psy12008 130 LFYRFQGVALPKSIKGFIPSWMNMGLSSIEAGKSDIFLVIRLGQ----------ISSNIVQKQNDIFNKEFKRQQNAVG 198 (458)
Q Consensus 130 ~~~Ri~g~s~p~~~~~~~~~~~~~~~~~ee~~~rdh~~i~~~~~----------l~~~~~~~~~~l~e~l~~~q~~~i~ 198 (458)
.++||||+|||++. +|++|++++ |||+|||||+|+.--+ +.+.|.+++..|.+++.+.-++...
T Consensus 110 ~l~Riyg~~f~~~~--~l~~~~~~~---eea~~rdHr~lg~~l~lf~~~~~~~~G~~~~lP~G~~i~~~L~~~~r~~~~ 183 (545)
T PRK14799 110 QYVRIRGVAFETEE--QLKDYLTWL---EKAEETDHRLIGEKLDLFSFHEEAGSGLVLFHPKGQTIRNELIAFMREIND 183 (545)
T ss_pred eeEEEEEeecCCHH--HHHHHHHHH---HhcccCCHHHHHHHcCCcccccccCCcceEEcChHHHHHHHHHHHHHHHHH
Confidence 47899999999999 999999999 9999999999987322 2345889999999999888887764
No 17
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=99.78 E-value=2e-18 Score=183.53 Aligned_cols=127 Identities=19% Similarity=0.223 Sum_probs=106.1
Q ss_pred hhHHHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy12008 277 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL 356 (458)
Q Consensus 277 ~~~y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~edl~~Ie~~m~~iI~~~~pi~~~ 356 (458)
.-+.|||++|||++|++++||.++. + .|+.+..++||+||... .++|++++.+||++||++|++|.||+..
T Consensus 452 ~~~r~HTAtHLL~~ALr~vlG~~v~-q----~Gs~v~~d~~r~DF~~~----~~it~edL~~IE~~vNeiI~~n~pV~~~ 522 (594)
T PRK01584 452 ETTKLHTATHLLHKALRLVLGDHVR-Q----KGSNITAERLRFDFSHP----EKMTDDEIKKVEDIVNLQIKNDLSVKKE 522 (594)
T ss_pred cHHHHHHHHHHHHHHHHHHcCccce-e----ecCCcCCCcEEEEEeCC----CCCCHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 3578999999999999999997322 2 25555556899999876 6899999999999999999999999999
Q ss_pred EeCHHHHHHHhhhCcccccccccccccCCCCeEEEEEECCe-EeeeCCCCccCcCccCcEEEEeec
Q psy12008 357 SISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDH-IDISRGPMMSNTNHLGRCTIAAVS 421 (458)
Q Consensus 357 ~vs~eeA~~~F~~~~~K~~ll~~~~~~~~~~~v~iy~~g~~-~D~c~Gphv~~Tg~I~~f~l~~~~ 421 (458)
+++++||+++... .++.... ++.|++|++|+| .++|+||||+|||+||.|+|++.+
T Consensus 523 ~~s~eEA~~~~~~-----~lf~e~y----~~~VRVV~Igd~d~elCGGTHV~nTgeIG~fkI~s~~ 579 (594)
T PRK01584 523 VMSLEEAREKGAM-----ALFGEKY----EDIVKVYEIDGFSKEVCGGPHVENTGELGTFKIQKEQ 579 (594)
T ss_pred EcCHHHHHhcchh-----hhccccC----CCcEEEEEECCeeeeCCCCCCCCCcccCceEEEEecc
Confidence 9999999996432 2222211 468999999998 899999999999999999999864
No 18
>KOG1637|consensus
Probab=99.70 E-value=3.2e-18 Score=171.95 Aligned_cols=283 Identities=12% Similarity=0.141 Sum_probs=180.8
Q ss_pred cCccCccccccccccceeeEeecCCceEEEeeccCcccccchhHHHHHhccchhhhcchhhhhhhh---------hcCCC
Q psy12008 105 PMMSNTNHLGRCTIAAAQQVETDAGLFYRFQGVALPKSIKGFIPSWMNMGLSSIEAGKSDIFLVIR---------LGQIS 175 (458)
Q Consensus 105 phv~~Tg~i~~~~i~~~f~l~~~~g~~~Ri~g~s~p~~~~~~~~~~~~~~~~~ee~~~rdh~~i~~---------~~~l~ 175 (458)
|||++||.|+ +|++...+..||. |-+||+.. ++++|.+++ |||++||||+|+. ++++|
T Consensus 118 phi~~tg~ik------a~k~~~nss~yw~--~~sfp~~k--~~k~~~~~~---~Ea~~rdHRkig~~qeLfff~~lSPGS 184 (560)
T KOG1637|consen 118 PHIRHTGKIK------AFKILKNSSAYWE--GDSFPDPK--QLKEWEKFQ---EEAKKRDHRKIGKEQELFFFHELSPGS 184 (560)
T ss_pred ccccccceee------eeeeeccchhhhc--cccCCCHH--HHHHHHhhc---hhhhhhhhhhhhhhhhheeeccCCCcc
Confidence 9999999999 9999999999997 56999999 999999999 9999999999976 56667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--c-ceeE--EE--------------------Eee-------C---CCCcEEEc--
Q psy12008 176 SNIVQKQNDIFNKEFKRQQNAVGR--I-EKIN--VT--------------------YKG-------L---PEDAELIM-- 218 (458)
Q Consensus 176 ~~~~~~~~~l~e~l~~~q~~~i~~--~-~~i~--v~--------------------~~~-------~---~~g~~~~~-- 218 (458)
++|++++.+|||+|-+..++++.. . +.|+ +. +.. . .-|-.+.+
T Consensus 185 ~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~e~eke~~~LKPMNCPgHcLmf~~ 264 (560)
T KOG1637|consen 185 CFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKFEVEKEEFALKPMNCPGHCLMFAH 264 (560)
T ss_pred eeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhhhceeeeechhhhccCccCCCcccccccc
Confidence 789999999999999999999863 2 2211 00 000 0 00000000
Q ss_pred -------------------ccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccc--eec------ccC-
Q psy12008 219 -------------------NKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQ--LLH------FYD- 270 (458)
Q Consensus 219 -------------------~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve--~l~------~~~- 270 (458)
....|+++..+.++..-...++.+....++ +++.-.+.-+-++.- ++. +++
T Consensus 265 r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~Q-i~~Eik~~l~fl~~vY~~fgf~f~l~lSTR 343 (560)
T KOG1637|consen 265 RDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPDQ-VKEEIKGCLDFLDYVYGVFGFTFKLNLSTR 343 (560)
T ss_pred CCccHhhCCccccCcceeeeccccccccccceeeeecccCceEEecCcc-HHHHHHHHHHHHHHHHHhccccceeEeccC
Confidence 001112222222222222333444444455 444332222212111 111 121
Q ss_pred CCCcchhhHHHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccCCcEEE----EEecCCCCCCCCCHHHHHHHHHHHHHH
Q psy12008 271 SDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVY----DVQLSGVDNWKPTSAELRVLSAEMVKL 346 (458)
Q Consensus 271 ~~g~~~~~~y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~----d~~~~~~~~~~lt~edl~~Ie~~m~~i 346 (458)
+++..+.---|.-+...|..|+.+ ++..-.+. .| +|+|| |+.+. ++--+..++..|....+-.
T Consensus 344 Pe~~lG~l~~Wd~AE~~L~~al~e-~g~pw~lN----~G-----DGAFYGPKIDi~l~---Dal~r~hQcaTIQLDFqLP 410 (560)
T KOG1637|consen 344 PEKFLGDLETWDEAEFKLEEALNE-SGEPWVLN----PG-----DGAFYGPKIDITLD---DALGRKHQCATIQLDFQLP 410 (560)
T ss_pred hHHhccCHHHHHHHHHHHHHHHHH-hCCCceec----CC-----CcccccceeeeEhh---hhcCcccceeeeeecccCh
Confidence 121111335688999999999876 55433331 23 46777 44433 3555778999999999999
Q ss_pred HHcCCCeEE----EEeCHHHHHHHhhhCcccccccccccccCCCCeEEEEEECCeEeeeCCCCccCcCccCcE
Q psy12008 347 AYEAVPFER----LSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRC 415 (458)
Q Consensus 347 I~~~~pi~~----~~vs~eeA~~~F~~~~~K~~ll~~~~~~~~~~~v~iy~~g~~~D~c~Gphv~~Tg~I~~f 415 (458)
+.-+++++. .+.+.--++++|++-++++.+|.+....+ .+-+-.-|.+.++++..||..+-|.-.+.+
T Consensus 411 ~rFdL~y~~~~g~~erPVmIHRAIlGSvERmiaiL~E~~~gk-wPFWlSPRq~~vIpVse~~~~ya~~V~~ql 482 (560)
T KOG1637|consen 411 IRFDLEYETEDGDLERPVMIHRAILGSVERMIAILLESYGGK-WPFWLSPRQAVVIPVSEGPLDYATSVQKQL 482 (560)
T ss_pred hhcCceeecccccccchhhHHHHHhhhHHHHHHHHHHHhCCC-CCeeeccceEEEEECCCcchhHHHHHHHHH
Confidence 999999998 67777789999998777777776544211 233444567777888888887777765554
No 19
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=99.69 E-value=2.2e-16 Score=176.05 Aligned_cols=144 Identities=17% Similarity=0.142 Sum_probs=114.2
Q ss_pred ccccccccc-eecccCCCCcchhhHHHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCHH
Q psy12008 256 PLESDCELQ-LLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSA 334 (458)
Q Consensus 256 pl~~d~~ve-~l~~~~~~g~~~~~~y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~e 334 (458)
++..+..|+ -|||+.+.. -+.+||++|||++|++++|+.++.. .|..+..+++++||... .++|++
T Consensus 537 ~l~~G~~V~~~VD~~rR~~----~m~~HTAtHLL~aAL~~vlg~~v~q-----~Gs~v~~d~~r~Df~~~----~~lt~e 603 (851)
T TIGR00344 537 SLKVGDKVIAVIDEKRRLR----IMRNHSATHLLHAALQKVLGNHVWQ-----AGSLVSVKKLRFDFSHY----RALTRE 603 (851)
T ss_pred CCCCCCEEEEEEcHHHHHH----HHHHHHHHHHHHHHHHHHhCCceEe-----ccCcccCCcEEEEecCC----CCCCHH
Confidence 444444455 367665543 4689999999999999999864322 24445556899999865 589999
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhhCcccccccccccccCCCCeEEEEEECCe-EeeeCCCCccCcCccC
Q psy12008 335 ELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDH-IDISRGPMMSNTNHLG 413 (458)
Q Consensus 335 dl~~Ie~~m~~iI~~~~pi~~~~vs~eeA~~~F~~~~~K~~ll~~~~~~~~~~~v~iy~~g~~-~D~c~Gphv~~Tg~I~ 413 (458)
++.+||++||++|++|+||+...++++||.+++.. .+..... ++.|+++++|++ .++|+||||+|||+|+
T Consensus 604 el~~IE~~vNelI~~n~pV~~~~~~~eeA~~~~~~-----~~~~e~y----~~~VRVV~Ig~~d~e~CgGTHV~nTgeIg 674 (851)
T TIGR00344 604 ELEKIEDLVNEQILANIPIKVIFMDLDEAKAKGAF-----ALFGEKY----GEKVRVVSVGDVSVELCGGTHVRNTGEIG 674 (851)
T ss_pred HHHHHHHHHHHHHHhCCceEEEEeCHHHHHhcchh-----hhcCCCC----CCeEEEEEECCeeccCCCCCccCChhhCe
Confidence 99999999999999999999999999999997653 1121111 467999999996 6899999999999999
Q ss_pred cEEEEeec
Q psy12008 414 RCTIAAVS 421 (458)
Q Consensus 414 ~f~l~~~~ 421 (458)
.|+|++.+
T Consensus 675 ~~kI~~~~ 682 (851)
T TIGR00344 675 LFKIVKES 682 (851)
T ss_pred EEEEEEEe
Confidence 99999966
No 20
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=99.67 E-value=3.8e-16 Score=174.80 Aligned_cols=153 Identities=20% Similarity=0.202 Sum_probs=118.4
Q ss_pred CCeEEeec----ccccccccccc-eecccCCCCcchhhHHHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccCCcEEEE
Q psy12008 246 DGVKLWDM----HRPLESDCELQ-LLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYD 320 (458)
Q Consensus 246 ng~~~~dL----~~pl~~d~~ve-~l~~~~~~g~~~~~~y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d 320 (458)
+|. ++-. ..++..+..|+ -|||+.+.. -+.+||++|||++|++++||.++.. .|..+..+++++|
T Consensus 517 ~g~-i~H~~~~~~~~l~~G~~V~~~ID~~rR~~----~m~~HTa~HLL~~al~~~lg~~v~q-----~Gs~~~~~~~r~D 586 (865)
T PRK00252 517 NGL-IVHRGKVEEGELKVGDEVTAEVDEERRRA----IARNHSATHLLHAALREVLGEHVTQ-----AGSLVAPDRLRFD 586 (865)
T ss_pred CCE-EEEEEEeccCCCCCCCEEEEEEcHHHHHH----HHHHHHHHHHHHHHHHHHhhhheEe-----ccCcccCCeEEEE
Confidence 566 4442 23455555565 477776653 4779999999999999999864321 2444555689999
Q ss_pred EecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhhCcccccccccccccCCCCeEEEEEECCe-Ee
Q psy12008 321 VQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDH-ID 399 (458)
Q Consensus 321 ~~~~~~~~~~lt~edl~~Ie~~m~~iI~~~~pi~~~~vs~eeA~~~F~~~~~K~~ll~~~~~~~~~~~v~iy~~g~~-~D 399 (458)
|... .++|++++.+||++||++|.+++||+...++++||.+... ..++.... .+.|+++.||++ ++
T Consensus 587 f~~~----~~lt~eel~~IE~~vN~lI~~n~pV~~~~~~~~eA~~~~~-----~~~~~~~y----~~~VRVV~Ig~~d~~ 653 (865)
T PRK00252 587 FSHF----EALTPEELRKIEDLVNEKIRENLPVETEEMSIEEAKKMGA-----MALFGEKY----GDEVRVVSIGDFSIE 653 (865)
T ss_pred eecC----CCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhCCc-----hhhccccC----CCeEEEEEECCceee
Confidence 9875 5899999999999999999999999999999999998421 11222211 568999999994 79
Q ss_pred eeCCCCccCcCccCcEEEEeec
Q psy12008 400 ISRGPMMSNTNHLGRCTIAAVS 421 (458)
Q Consensus 400 ~c~Gphv~~Tg~I~~f~l~~~~ 421 (458)
+|+||||+|||+|+.|+|++.+
T Consensus 654 ~CgGTHV~nTgeIg~~kI~~~~ 675 (865)
T PRK00252 654 LCGGTHVSNTGDIGLFKIVSES 675 (865)
T ss_pred CCCCCccCCcccCeEEEEEEEe
Confidence 9999999999999999999865
No 21
>PLN02900 alanyl-tRNA synthetase
Probab=99.65 E-value=1.5e-15 Score=170.11 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=113.2
Q ss_pred ccccccccc-eecccCCCCcchhhHHHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCHH
Q psy12008 256 PLESDCELQ-LLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSA 334 (458)
Q Consensus 256 pl~~d~~ve-~l~~~~~~g~~~~~~y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~e 334 (458)
++..+..|+ -|||+.+.. -+.+||++|||.+|++++|+.++.. .|..+..+++++||... .++|++
T Consensus 575 ~l~~G~~V~~~VD~~rR~~----~m~~HTAtHLL~aALr~vlG~~v~q-----~Gs~v~~d~~r~Df~~~----~~lt~e 641 (936)
T PLN02900 575 SVSVGDAVTCKVDYDRRRR----IAPNHTATHLLNSALKEVLGDHVDQ-----KGSLVAFEKLRFDFSHG----KPMTPE 641 (936)
T ss_pred CCCCCCEEEEEECHHHHHH----HHHHHHHHHHHHHHHHHHcCCcEEe-----ccccccCCeEEEEeeCC----CCCCHH
Confidence 444444555 477766543 4679999999999999999874322 25445556899999876 689999
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhhCcccccccccccccCCCCeEEEEEECCe--EeeeCCCCccCcCcc
Q psy12008 335 ELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDH--IDISRGPMMSNTNHL 412 (458)
Q Consensus 335 dl~~Ie~~m~~iI~~~~pi~~~~vs~eeA~~~F~~~~~K~~ll~~~~~~~~~~~v~iy~~g~~--~D~c~Gphv~~Tg~I 412 (458)
++.+||++||++|.+|.||+...++++||.++.+.. .+..... .+.||++.+|++ +++|+||||+|||+|
T Consensus 642 el~~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~~----~~f~e~y----~~~VRVV~Ig~~~d~elCGGTHV~nTgeI 713 (936)
T PLN02900 642 ELREVESLVNEWIGDALPVEAKEMPLADAKRINGLR----AVFGEKY----PDPVRVVSVGGVYSMELCGGTHVSNTAEA 713 (936)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCHHHHhhccChH----hhcCCCC----CCcEEEEEECCccceeCCCCCcCCccccC
Confidence 999999999999999999999999999999853321 0111111 357999999996 589999999999999
Q ss_pred CcEEEEeec
Q psy12008 413 GRCTIAAVS 421 (458)
Q Consensus 413 ~~f~l~~~~ 421 (458)
|.|+|++.+
T Consensus 714 G~fkIls~~ 722 (936)
T PLN02900 714 EAFKLLSEE 722 (936)
T ss_pred ceEEEEEEe
Confidence 999999965
No 22
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=99.64 E-value=2e-15 Score=168.89 Aligned_cols=156 Identities=13% Similarity=0.132 Sum_probs=118.7
Q ss_pred CCeEEeec-ccc-cccccccc-eecccCCCCcchhhHHHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccCCcEEEEEe
Q psy12008 246 DGVKLWDM-HRP-LESDCELQ-LLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQ 322 (458)
Q Consensus 246 ng~~~~dL-~~p-l~~d~~ve-~l~~~~~~g~~~~~~y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~ 322 (458)
+|. ++-. ..+ +..+..|+ -|||+.+.. -+.+||++|||.+|+++++|.++. + .|..+..+.+++||.
T Consensus 563 ~g~-i~H~~~~~~l~~G~~V~~~VD~~rR~~----~m~~HTAtHLL~~alr~vlG~~v~----q-~Gs~v~~d~~r~Df~ 632 (902)
T TIGR03683 563 GGV-IVHKVDGEGIKEGDEVKGEIDWERRLR----LMRHHTATHVLLAAARRVLGRHVW----Q-AGAQKDTDKARLDIT 632 (902)
T ss_pred CCE-EEEEeCCCCCCCCCEEEEEECHHHHHH----HHHHHHHHHHHHHHHHHHhCCcee----e-cCccccCCcEEEEEe
Confidence 565 4442 222 44444455 477776543 467999999999999999987432 1 255555567888987
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhhCcccccccccccccCCCCeEEEEEECCe-Eeee
Q psy12008 323 LSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDH-IDIS 401 (458)
Q Consensus 323 ~~~~~~~~lt~edl~~Ie~~m~~iI~~~~pi~~~~vs~eeA~~~F~~~~~K~~ll~~~~~~~~~~~v~iy~~g~~-~D~c 401 (458)
.. ..+|++++.+||+.||++|.+|+||+..+++++||.+.+.- .+...-.+ .++.|+++++|++ +.+|
T Consensus 633 ~~----~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~-----~l~~~~~~--~~~~VRVV~Ig~~d~e~C 701 (902)
T TIGR03683 633 HY----KRISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQKYGF-----RLYQGGVP--PGREIRVVEIEDWDVQAC 701 (902)
T ss_pred CC----CCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhcCch-----hhhccCCC--CCCeEEEEEECCeeeeCC
Confidence 64 58999999999999999999999999999999999986542 22211111 1578999999997 6899
Q ss_pred CCCCccCcCccCcEEEEeecc
Q psy12008 402 RGPMMSNTNHLGRCTIAAVSF 422 (458)
Q Consensus 402 ~Gphv~~Tg~I~~f~l~~~~~ 422 (458)
+||||+|||+|+.|+|++.++
T Consensus 702 gGTHV~nTgeIG~~kI~~~~~ 722 (902)
T TIGR03683 702 GGTHCRNTGEIGPIKILKTER 722 (902)
T ss_pred CCCCccchhcCceEEEEEEEE
Confidence 999999999999999999753
No 23
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=99.64 E-value=2.5e-15 Score=168.12 Aligned_cols=141 Identities=13% Similarity=0.140 Sum_probs=112.1
Q ss_pred cccc-eecccCCCCcchhhHHHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCHHHHHHH
Q psy12008 261 CELQ-LLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVL 339 (458)
Q Consensus 261 ~~ve-~l~~~~~~g~~~~~~y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~edl~~I 339 (458)
..|+ -|||+.+.. -+-+||++|||.+|++++||.++. + .|..+..+.+++||... ..+|++++.+|
T Consensus 575 ~~V~~~VD~~rR~~----~mr~HTAtHLL~~al~~vlG~~v~----q-~Gs~v~~d~~r~Df~~~----~~lt~eel~~I 641 (900)
T PRK13902 575 DEVRGEIDWERRYR----LMRHHTATHIILAAARKVLGDHVW----Q-AGAQKTVDKARLDITHY----KRITREEVKEI 641 (900)
T ss_pred CEEEEEECHHHHHH----HHHHHHHHHHHHHHHHHHhCCcee----e-cCccccCCCEEEEEeCC----CCCCHHHHHHH
Confidence 3455 467766543 456899999999999999987432 1 25555556789999865 58999999999
Q ss_pred HHHHHHHHHcCCCeEEEEeCHHHHHHHhhhCccccccccc-ccccCCCCeEEEEEECCe-EeeeCCCCccCcCccCcEEE
Q psy12008 340 SAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPS-IVQQSIDGKVIVYRIKDH-IDISRGPMMSNTNHLGRCTI 417 (458)
Q Consensus 340 e~~m~~iI~~~~pi~~~~vs~eeA~~~F~~~~~K~~ll~~-~~~~~~~~~v~iy~~g~~-~D~c~Gphv~~Tg~I~~f~l 417 (458)
|+.||++|.+|.||+..+++++||.+.+.- .+... .++ ++.|+|+++|++ +.+|+||||+|||+||.|+|
T Consensus 642 E~~vN~~I~~n~pV~~~~~~~~eA~~~~~~-----~l~~~g~~~---~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG~~kI 713 (900)
T PRK13902 642 ERLANEIVMENRPVKVEWMDRNEAEQKYGF-----RLYQGGVPP---GKTIRVVEIGDWDVEACGGTHVSNTGEIGPIKI 713 (900)
T ss_pred HHHHHHHHHcCCCEEEEecCHHHHHhccch-----hhhccCCCC---CCeEEEEEECCeeeeCCCCCCcCcHhhCeeEEE
Confidence 999999999999999999999999987542 22211 121 578999999997 68999999999999999999
Q ss_pred Eeecc
Q psy12008 418 AAVSF 422 (458)
Q Consensus 418 ~~~~~ 422 (458)
++.+.
T Consensus 714 ~~~e~ 718 (900)
T PRK13902 714 LKTER 718 (900)
T ss_pred EEEEE
Confidence 99753
No 24
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=8.4e-15 Score=160.18 Aligned_cols=126 Identities=19% Similarity=0.198 Sum_probs=104.8
Q ss_pred HHHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEe
Q psy12008 279 TFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSI 358 (458)
Q Consensus 279 ~y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~edl~~Ie~~m~~iI~~~~pi~~~~v 358 (458)
+-.||++|||.+|+++++|.++.. -|..+..+...+||... ..+|+|+|++||..+|++|.+|.|++..+|
T Consensus 564 ~~nHTATHLLh~ALr~VLG~hV~Q-----aGSlv~~~~lRfDfsH~----~~it~Eel~~IE~~vNe~I~~n~~V~~~~m 634 (879)
T COG0013 564 MRNHTATHLLHAALRKVLGDHVWQ-----AGSLVDPEKLRFDFSHY----KALTAEELKEIERLVNEIIRENLPVKTEEM 634 (879)
T ss_pred HhhChHHHHHHHHHHHHhCcccee-----cCcccCCCeeEEeecCC----CCCCHHHHHHHHHHHHHHHHcCCceeEEEc
Confidence 458999999999999999986432 26666655567777654 799999999999999999999999999999
Q ss_pred CHHHHHHHhhhCcccccccccccccCCCCeEEEEEECCe-EeeeCCCCccCcCccCcEEEEeecc
Q psy12008 359 SQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDH-IDISRGPMMSNTNHLGRCTIAAVSF 422 (458)
Q Consensus 359 s~eeA~~~F~~~~~K~~ll~~~~~~~~~~~v~iy~~g~~-~D~c~Gphv~~Tg~I~~f~l~~~~~ 422 (458)
++++|.++ +.. -+..... .+.|||+.+|+| +.+|+|+||+|||+||.|+|++.++
T Consensus 635 ~~~eAk~~-Ga~----alfGekY----~~~VRVV~ig~~SvElCGGTHv~~Tg~IG~fkI~~e~~ 690 (879)
T COG0013 635 DLDEAKAK-GAM----ALFGEKY----GDEVRVVEIGDFSVELCGGTHVSNTGDIGLFKIISEEG 690 (879)
T ss_pred cHHHHHHh-ChH----hhcCCcC----CCeEEEEEECCceeeccCCcccCCccceeeEEEEEecc
Confidence 99999987 321 1222333 478999999998 7999999999999999999999764
No 25
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=99.57 E-value=1.7e-14 Score=153.84 Aligned_cols=117 Identities=16% Similarity=0.239 Sum_probs=95.2
Q ss_pred cCCCcc-cCCCccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhhccccccccccc
Q psy12008 3 FKNDVR-GKVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSI 81 (458)
Q Consensus 3 ~~~~~~-~~~~~~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~~~~K~~li~~~ 81 (458)
|++.+. .++....++|||||..+. ++|++++.+||++||++|++|+||+...++++||+++... .++...
T Consensus 471 lG~~v~q~Gs~v~~d~~r~DF~~~~----~it~edL~~IE~~vNeiI~~n~pV~~~~~s~eEA~~~~~~-----~lf~e~ 541 (594)
T PRK01584 471 LGDHVRQKGSNITAERLRFDFSHPE----KMTDDEIKKVEDIVNLQIKNDLSVKKEVMSLEEAREKGAM-----ALFGEK 541 (594)
T ss_pred cCccceeecCCcCCCcEEEEEeCCC----CCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHHhcchh-----hhcccc
Confidence 555443 344566789999998764 8999999999999999999999999999999999985431 222222
Q ss_pred cccCCCCeEEEEEECCe-EeeecCcCccCccccccccccceeeEeec---CCceEEEeecc
Q psy12008 82 VQQSIDGKVIVYRIKDH-IDISRGPMMSNTNHLGRCTIAAAQQVETD---AGLFYRFQGVA 138 (458)
Q Consensus 82 ~~~~~~~~v~vy~~g~~-~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~---~g~~~Ri~g~s 138 (458)
. .+.|+||++||| .++|+||||+|||+|+ .|+|.+. +.+.+||.++.
T Consensus 542 y----~~~VRVV~Igd~d~elCGGTHV~nTgeIG------~fkI~s~~s~g~GvrRI~av~ 592 (594)
T PRK01584 542 Y----EDIVKVYEIDGFSKEVCGGPHVENTGELG------TFKIQKEQSSSSGVRRIRAIL 592 (594)
T ss_pred C----CCcEEEEEECCeeeeCCCCCCCCCcccCc------eEEEEecccccCCeEEEEEEe
Confidence 1 467999999998 8999999999999999 8888764 67889998764
No 26
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=99.50 E-value=2.6e-13 Score=151.63 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=96.0
Q ss_pred cCCCccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhhccccccccccccccCCCC
Q psy12008 9 GKVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDG 88 (458)
Q Consensus 9 ~~~~~~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~~~~K~~li~~~~~~~~~~ 88 (458)
.+.....+++|+||.... ++|++++.+||++||++|++|+||+...++++||.+++.. .+..... .+
T Consensus 581 ~Gs~v~~d~~r~Df~~~~----~lt~eel~~IE~~vNelI~~n~pV~~~~~~~eeA~~~~~~-----~~~~e~y----~~ 647 (851)
T TIGR00344 581 AGSLVSVKKLRFDFSHYR----ALTREELEKIEDLVNEQILANIPIKVIFMDLDEAKAKGAF-----ALFGEKY----GE 647 (851)
T ss_pred ccCcccCCcEEEEecCCC----CCCHHHHHHHHHHHHHHHHhCCceEEEEeCHHHHHhcchh-----hhcCCCC----CC
Confidence 344556789999998654 7999999999999999999999999999999999997652 1222221 36
Q ss_pred eEEEEEECCe-EeeecCcCccCccccccccccceeeEeec---CCceEEEeeccCcccc
Q psy12008 89 KVIVYRIKDH-IDISRGPMMSNTNHLGRCTIAAAQQVETD---AGLFYRFQGVALPKSI 143 (458)
Q Consensus 89 ~v~vy~~g~~-~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~---~g~~~Ri~g~s~p~~~ 143 (458)
.|+|+++|++ .++|+||||+|||+|+ .|+|.+. +++.+||..++.+...
T Consensus 648 ~VRVV~Ig~~d~e~CgGTHV~nTgeIg------~~kI~~~~~~~~G~~RIe~v~G~~A~ 700 (851)
T TIGR00344 648 KVRVVSVGDVSVELCGGTHVRNTGEIG------LFKIVKESGIAAGVRRIEAVTGNAAI 700 (851)
T ss_pred eEEEEEECCeeccCCCCCccCChhhCe------EEEEEEEeEecCCeEEEEEEEcHHHH
Confidence 7999999995 6899999999999999 7777653 5789999999988777
No 27
>PLN02961 alanine-tRNA ligase
Probab=99.49 E-value=3.7e-13 Score=128.78 Aligned_cols=142 Identities=15% Similarity=0.116 Sum_probs=101.3
Q ss_pred ccccccccc-eecccCCCCcchhhHHHhhHHHHHHHHHHHH-cCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCH
Q psy12008 256 PLESDCELQ-LLHFYDSDPYHSNRTFWRSCSIMLGSVLSNA-FKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTS 333 (458)
Q Consensus 256 pl~~d~~ve-~l~~~~~~g~~~~~~y~hS~~~lL~~A~~~~-f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~ 333 (458)
++..+..|+ -|||+.+.. -+-.||++|||.+|++++ ++..... .|..... +-|+|+. ..++.
T Consensus 63 ~l~~G~~V~~~ID~~rR~~----~m~~HTa~HLL~~al~~~~~~~~~~~-----~g~~~~~-~~~v~~~------~~i~~ 126 (223)
T PLN02961 63 PFEAGDEVTVTVDESRRKL----HSRLHSAGHLLDVCMARVGLGPLEPG-----KGYHFPD-GPFVEYK------GKIPQ 126 (223)
T ss_pred CCCCCCEEEEEECHHHHhh----hhccCcHHHHHHHHHHHcCCCccccc-----cccccCC-ccceeec------ccCCH
Confidence 454445555 488877654 467999999999999997 6531111 1222233 4556653 24555
Q ss_pred HH----HHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhhCcccccccccccccCCCCeEEEEEECCeEe-eeCCCCccC
Q psy12008 334 AE----LRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHID-ISRGPMMSN 408 (458)
Q Consensus 334 ed----l~~Ie~~m~~iI~~~~pi~~~~vs~eeA~~~F~~~~~K~~ll~~~~~~~~~~~v~iy~~g~~~D-~c~Gphv~~ 408 (458)
++ +.+||+++|++|.+++|++..+++++||.++... +.. .... ..+.++++++|++.. .|+|+||.|
T Consensus 127 ~~~~~~~~~iE~~~N~~I~~~~~V~~~~~~~~ea~~~~~~---~~~--~~~~---~~~~vRiV~I~~~d~~~CgGTHv~n 198 (223)
T PLN02961 127 GELDSKQDELEAEANELIAEGGKVSAAVLPYDEAAELCGG---SLP--DYIA---KDSTPRIVKIGDSPGCPCGGTHVAD 198 (223)
T ss_pred HHHHhHHHHHHHHHHHHHHcCCceeEEEeCHHHHHHhcCC---cCC--CcCC---CCCceEEEEECCCccCccCCcccCc
Confidence 44 5799999999999999999999999999986431 110 1111 146799999999754 499999999
Q ss_pred cCccCcEEEEeec
Q psy12008 409 TNHLGRCTIAAVS 421 (458)
Q Consensus 409 Tg~I~~f~l~~~~ 421 (458)
|++|+.|+|++..
T Consensus 199 T~eig~i~I~~~~ 211 (223)
T PLN02961 199 VSEITSVKVTQIR 211 (223)
T ss_pred hhccccEEEEEEE
Confidence 9999999999864
No 28
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=99.48 E-value=4.7e-13 Score=150.14 Aligned_cols=116 Identities=20% Similarity=0.233 Sum_probs=95.2
Q ss_pred cCCCccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhhccccccccccccccCCCC
Q psy12008 9 GKVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDG 88 (458)
Q Consensus 9 ~~~~~~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~~~~K~~li~~~~~~~~~~ 88 (458)
.+.....+++++||.... ++|++++.+||++||++|++++||+...++++||.+... ..++.... .+
T Consensus 574 ~Gs~~~~~~~r~Df~~~~----~lt~eel~~IE~~vN~lI~~n~pV~~~~~~~~eA~~~~~-----~~~~~~~y----~~ 640 (865)
T PRK00252 574 AGSLVAPDRLRFDFSHFE----ALTPEELRKIEDLVNEKIRENLPVETEEMSIEEAKKMGA-----MALFGEKY----GD 640 (865)
T ss_pred ccCcccCCeEEEEeecCC----CCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhCCc-----hhhccccC----CC
Confidence 455556789999998754 799999999999999999999999999999999997421 12222222 46
Q ss_pred eEEEEEECC-eEeeecCcCccCccccccccccceeeEeec---CCceEEEeeccCcccc
Q psy12008 89 KVIVYRIKD-HIDISRGPMMSNTNHLGRCTIAAAQQVETD---AGLFYRFQGVALPKSI 143 (458)
Q Consensus 89 ~v~vy~~g~-~~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~---~g~~~Ri~g~s~p~~~ 143 (458)
.|+|+.+|+ .+++|+||||+|||+|+ .|+|.+. +++.+||..++.....
T Consensus 641 ~VRVV~Ig~~d~~~CgGTHV~nTgeIg------~~kI~~~~~~~~g~~RI~~v~G~~A~ 693 (865)
T PRK00252 641 EVRVVSIGDFSIELCGGTHVSNTGDIG------LFKIVSESGVAAGVRRIEAVTGEAAL 693 (865)
T ss_pred eEEEEEECCceeeCCCCCccCCcccCe------EEEEEEEeeecCCeEEEEEEECHHHH
Confidence 899999999 57999999999999999 7776654 5788999999987766
No 29
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=99.43 E-value=1.9e-12 Score=145.16 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=93.8
Q ss_pred CCccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhhcccccccccc-ccccCCCCe
Q psy12008 11 VSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPS-IVQQSIDGK 89 (458)
Q Consensus 11 ~~~~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~~~~K~~li~~-~~~~~~~~~ 89 (458)
.....+.+++||.... ++|++++.+||+.||++|.+|+||+...++++||.+++. ..+... .+ ..+.
T Consensus 616 s~v~~d~~r~Df~~~~----~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~-----~~l~~~g~~---~~~~ 683 (900)
T PRK13902 616 AQKTVDKARLDITHYK----RITREEVKEIERLANEIVMENRPVKVEWMDRNEAEQKYG-----FRLYQGGVP---PGKT 683 (900)
T ss_pred ccccCCCEEEEEeCCC----CCCHHHHHHHHHHHHHHHHcCCCEEEEecCHHHHHhccc-----hhhhccCCC---CCCe
Confidence 3345688999998653 799999999999999999999999999999999998654 222211 11 2578
Q ss_pred EEEEEECCe-EeeecCcCccCccccccccccceeeEeec---CCceEEEeeccCcccc
Q psy12008 90 VIVYRIKDH-IDISRGPMMSNTNHLGRCTIAAAQQVETD---AGLFYRFQGVALPKSI 143 (458)
Q Consensus 90 v~vy~~g~~-~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~---~g~~~Ri~g~s~p~~~ 143 (458)
|+|+++|+| +.+|+||||.|||+|+ .|+|.+. +++++||..++.+...
T Consensus 684 VRVV~Ig~~d~e~CgGTHV~nTgeIG------~~kI~~~e~i~~Gv~RIe~v~G~~A~ 735 (900)
T PRK13902 684 IRVVEIGDWDVEACGGTHVSNTGEIG------PIKILKTERIQDGVERLEFAAGDAAV 735 (900)
T ss_pred EEEEEECCeeeeCCCCCCcCcHhhCe------eEEEEEEEEecCCeEEEEEEEChHHH
Confidence 999999997 7899999999999999 6666653 6788999999987766
No 30
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=3.8e-12 Score=139.61 Aligned_cols=115 Identities=18% Similarity=0.241 Sum_probs=95.8
Q ss_pred CCCccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhhccccccccccccccCCCCe
Q psy12008 10 KVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGK 89 (458)
Q Consensus 10 ~~~~~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~~~~K~~li~~~~~~~~~~~ 89 (458)
|.-...+-..+||.+.+ ++|.++|++||..+|++|.+|+|++...|++++|++. .. ..|....+ .+.
T Consensus 589 GSlv~~~~lRfDfsH~~----~it~Eel~~IE~~vNe~I~~n~~V~~~~m~~~eAk~~-Ga----~alfGekY----~~~ 655 (879)
T COG0013 589 GSLVDPEKLRFDFSHYK----ALTAEELKEIERLVNEIIRENLPVKTEEMDLDEAKAK-GA----MALFGEKY----GDE 655 (879)
T ss_pred CcccCCCeeEEeecCCC----CCCHHHHHHHHHHHHHHHHcCCceeEEEccHHHHHHh-Ch----HhhcCCcC----CCe
Confidence 44445667889998764 8999999999999999999999999999999999985 31 12223333 378
Q ss_pred EEEEEECCe-EeeecCcCccCccccccccccceeeEeec---CCceEEEeeccCcccc
Q psy12008 90 VIVYRIKDH-IDISRGPMMSNTNHLGRCTIAAAQQVETD---AGLFYRFQGVALPKSI 143 (458)
Q Consensus 90 v~vy~~g~~-~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~---~g~~~Ri~g~s~p~~~ 143 (458)
|||+++|+| +.+|+|+||.|||.|+ .|++.+. +.+++||.+++.....
T Consensus 656 VRVV~ig~~SvElCGGTHv~~Tg~IG------~fkI~~e~~i~aGVrRIeavtG~~a~ 707 (879)
T COG0013 656 VRVVEIGDFSVELCGGTHVSNTGDIG------LFKIISEEGIAAGVRRIEAVTGEAAL 707 (879)
T ss_pred EEEEEECCceeeccCCcccCCcccee------eEEEEEecccccCeEEEEEEcCHHHH
Confidence 999999997 7999999999999999 8888765 6789999999887666
No 31
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=99.41 E-value=2.8e-12 Score=143.84 Aligned_cols=115 Identities=13% Similarity=0.156 Sum_probs=93.5
Q ss_pred CCccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhhcccccccccc-ccccCCCCe
Q psy12008 11 VSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPS-IVQQSIDGK 89 (458)
Q Consensus 11 ~~~~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~~~~K~~li~~-~~~~~~~~~ 89 (458)
.....+.+++||.... ++|++++.+||+.||++|.+|+||+...++++||.+.+.- .+... .+ ..+.
T Consensus 620 s~v~~d~~r~Df~~~~----~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~-----~l~~~~~~---~~~~ 687 (902)
T TIGR03683 620 AQKDTDKARLDITHYK----RISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQKYGF-----RLYQGGVP---PGRE 687 (902)
T ss_pred ccccCCcEEEEEeCCC----CCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhcCch-----hhhccCCC---CCCe
Confidence 3344678999998653 7999999999999999999999999999999999986542 22211 11 2578
Q ss_pred EEEEEECCe-EeeecCcCccCccccccccccceeeEeec---CCceEEEeeccCcccc
Q psy12008 90 VIVYRIKDH-IDISRGPMMSNTNHLGRCTIAAAQQVETD---AGLFYRFQGVALPKSI 143 (458)
Q Consensus 90 v~vy~~g~~-~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~---~g~~~Ri~g~s~p~~~ 143 (458)
|+|+++|++ +.+|+||||+|||+|+ .|+|.+. +++.+||..++.+..+
T Consensus 688 VRVV~Ig~~d~e~CgGTHV~nTgeIG------~~kI~~~~~i~~Gv~RIe~v~G~~A~ 739 (902)
T TIGR03683 688 IRVVEIEDWDVQACGGTHCRNTGEIG------PIKILKTERIQDGVERIEFAAGEAAL 739 (902)
T ss_pred EEEEEECCeeeeCCCCCCccchhcCc------eEEEEEEEEecCCeEEEEEEEChHHH
Confidence 999999997 6899999999999999 6766653 6788999999987766
No 32
>PLN02900 alanyl-tRNA synthetase
Probab=99.41 E-value=2.6e-12 Score=144.29 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=93.5
Q ss_pred CCCccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhhccccccccccccccCCCCe
Q psy12008 10 KVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGK 89 (458)
Q Consensus 10 ~~~~~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~~~~K~~li~~~~~~~~~~~ 89 (458)
+..+..+++++||.+.. ++|++++.+||++||++|.+|+||+...++++||.++... + .+..... .+.
T Consensus 620 Gs~v~~d~~r~Df~~~~----~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~---~-~~f~e~y----~~~ 687 (936)
T PLN02900 620 GSLVAFEKLRFDFSHGK----PMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGL---R-AVFGEKY----PDP 687 (936)
T ss_pred cccccCCeEEEEeeCCC----CCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHhhccCh---H-hhcCCCC----CCc
Confidence 33455788999998764 8999999999999999999999999999999999984321 0 0111111 257
Q ss_pred EEEEEECCe--EeeecCcCccCccccccccccceeeEeec---CCceEEEeeccCcccc
Q psy12008 90 VIVYRIKDH--IDISRGPMMSNTNHLGRCTIAAAQQVETD---AGLFYRFQGVALPKSI 143 (458)
Q Consensus 90 v~vy~~g~~--~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~---~g~~~Ri~g~s~p~~~ 143 (458)
|+++.+|++ +++|+||||+|||+|+ .|+|.+. +++.+||+.++.+...
T Consensus 688 VRVV~Ig~~~d~elCGGTHV~nTgeIG------~fkIls~~~~~~G~rRIe~v~G~~A~ 740 (936)
T PLN02900 688 VRVVSVGGVYSMELCGGTHVSNTAEAE------AFKLLSEEGIAKGIRRITAVTGGAAV 740 (936)
T ss_pred EEEEEECCccceeCCCCCcCCccccCc------eEEEEEEeeecCCeEEEEEEEcHHHH
Confidence 999999995 6899999999999999 7776653 6778999999988776
No 33
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=99.40 E-value=1.3e-12 Score=124.84 Aligned_cols=159 Identities=18% Similarity=0.170 Sum_probs=113.4
Q ss_pred eEEEEECCeEEee---cccccccccccc-eecccCCCCcchhhHHHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccCC
Q psy12008 240 SVLALIDGVKLWD---MHRPLESDCELQ-LLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSG 315 (458)
Q Consensus 240 ~v~a~vng~~~~d---L~~pl~~d~~ve-~l~~~~~~g~~~~~~y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~g 315 (458)
+..+.++|..++- +...+....+|+ .+||+-+.. -+-+||++|||++++.+.++. .. .|..+...
T Consensus 57 ~~~~~~~~~~I~H~~~~~~~~~vG~~V~~~IDW~rRy~----~mr~HTa~Hlls~~~~~~~~~--~~-----~g~~i~~d 125 (241)
T COG2872 57 VEDVTKDGEEIVHVLAEHAKLKVGDKVKLKIDWERRYR----HMRMHTALHLLSAVLYKVYGA--LT-----TGFEIGED 125 (241)
T ss_pred EEEEEecceEEEEEecCcccCCCCCEEEEEECcHHHHH----HHhhhHHHHHHHHHhhccccc--ee-----ecceeccc
Confidence 4444444432343 222233445666 589987765 467999999999999999984 11 13333333
Q ss_pred cEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhhCcccccccccccccCCCCeEEEEEEC
Q psy12008 316 SFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIK 395 (458)
Q Consensus 316 gfy~d~~~~~~~~~~lt~edl~~Ie~~m~~iI~~~~pi~~~~vs~eeA~~~F~~~~~K~~ll~~~~~~~~~~~v~iy~~g 395 (458)
.-+.||+.. .++++++++++++|++|++|+|+.-..++++||.+++.-...+. ..++. ..+.+++++||
T Consensus 126 ~~~iD~~~e------~~~~~~~~v~~~~ne~v~~~~~v~~~~i~~EE~~~~p~~~~~~~----~~~~~-~~g~iRiV~I~ 194 (241)
T COG2872 126 YARIDFDGE------DTEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKN----KVPPD-VEGKIRIVEIG 194 (241)
T ss_pred ccccccccc------cchhhHHHHHHHHHHHHHcCCeeeeeecCHHHHhhCcChhhhcc----cCCcc-ccceEEEEEEC
Confidence 234455433 38999999999999999999999999999999999876533332 22221 13489999999
Q ss_pred CeE-eeeCCCCccCcCccCcEEEEee
Q psy12008 396 DHI-DISRGPMMSNTNHLGRCTIAAV 420 (458)
Q Consensus 396 ~~~-D~c~Gphv~~Tg~I~~f~l~~~ 420 (458)
|+. ..|+|+||++|++||.+++++.
T Consensus 195 did~qpCgGtHVk~T~EIG~Iki~k~ 220 (241)
T COG2872 195 DIDVQPCGGTHVKNTGEIGEIKILKT 220 (241)
T ss_pred CeeccCCCCcccCCccceEEEEEEEE
Confidence 963 4799999999999999999987
No 34
>KOG0188|consensus
Probab=99.01 E-value=1.9e-09 Score=114.28 Aligned_cols=125 Identities=14% Similarity=0.200 Sum_probs=99.5
Q ss_pred HHHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEe
Q psy12008 279 TFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSI 358 (458)
Q Consensus 279 ~y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~edl~~Ie~~m~~iI~~~~pi~~~~v 358 (458)
+-.||++|||..|+++++++ ... .|+.+..+.+.+||... ..+|.++++++|..||++|.++.|+...++
T Consensus 568 m~nHTaTHlLN~aLr~~l~~-t~Q-----kGSlV~pdklRfDf~~k----~~lt~eql~~vE~~~ne~I~~~~~V~~~e~ 637 (895)
T KOG0188|consen 568 MRNHTATHLLNFALRQVLKG-TDQ-----KGSLVAPDKLRFDFSTK----GALTKEQLKKVEDKINEFIQKNAPVYAKEL 637 (895)
T ss_pred hhcchHHHHHHHHHHHhccc-ccc-----cccccChhHeeeecccC----CCCCHHHHHHHHHHHHHHHhcCCceEEEec
Confidence 45899999999999999965 221 26666666788888755 469999999999999999999999999999
Q ss_pred CHHHHHHHhhhCcccccccccccccCCCCeEEEEEECCe----EeeeCCCCccCcCccCcEEEEeec
Q psy12008 359 SQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDH----IDISRGPMMSNTNHLGRCTIAAVS 421 (458)
Q Consensus 359 s~eeA~~~F~~~~~K~~ll~~~~~~~~~~~v~iy~~g~~----~D~c~Gphv~~Tg~I~~f~l~~~~ 421 (458)
+.++|.++-.- . ....+.. -+.|+++.+|.. +.+|+|+|+.+||.|+.|-|+.-.
T Consensus 638 ~l~~ak~i~gl---r-~v~~E~Y----PdpVRVVsvg~~~~~svE~CgGTH~~~t~~i~~fvI~se~ 696 (895)
T KOG0188|consen 638 PLAEAKKIPGL---R-AVFDEVY----PDPVRVVSVGAGQLTSVEFCGGTHLTNTSHIGDFVIVSEE 696 (895)
T ss_pred CHHHHhcCCCc---c-cccCCcc----CCceEEEEeccccccceeecCCcccccccccceEEEechh
Confidence 99999986321 1 1122222 257999999863 578999999999999999998743
No 35
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=98.89 E-value=3e-09 Score=80.48 Aligned_cols=55 Identities=24% Similarity=0.383 Sum_probs=51.8
Q ss_pred CCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceec
Q psy12008 211 PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLH 267 (458)
Q Consensus 211 ~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~ 267 (458)
|||+.++++.|. |+.|+|+.++..+++.+++|+|||+ .|||++||+++|.|++++
T Consensus 6 pdG~~~~~~~g~-T~~d~A~~I~~~l~~~~~~A~Vng~-~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 6 PDGSIKELPEGS-TVLDVAYSIHSSLAKRAVAAKVNGQ-LVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp TTSCEEEEETTB-BHHHHHHHHSHHHHHCEEEEEETTE-EEETTSBB-SSEEEEEEE
T ss_pred CCCCeeeCCCCC-CHHHHHHHHCHHHHhheeEEEEcCE-ECCCCCCcCCCCEEEEEC
Confidence 899999999996 8999999999999999999999999 999999999999999985
No 36
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=98.89 E-value=3.2e-09 Score=75.07 Aligned_cols=40 Identities=28% Similarity=0.399 Sum_probs=30.3
Q ss_pred EEEEEECC-eEeeecCcCccCccccccccccceeeEee---cCCceEEEe
Q psy12008 90 VIVYRIKD-HIDISRGPMMSNTNHLGRCTIAAAQQVET---DAGLFYRFQ 135 (458)
Q Consensus 90 v~vy~~g~-~~D~c~Gphv~~Tg~i~~~~i~~~f~l~~---~~g~~~Ri~ 135 (458)
|++|++|| ++|+|+||||+|||+|+ .|++.+ .+..++|||
T Consensus 1 vRvv~i~~~~~~~C~GtHv~~T~~i~------~~~i~~~~~~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIGDFDVDLCGGTHVPNTGEIG------HFKILKGESKGKGLRRIY 44 (44)
T ss_dssp EEEEEETTTEEEEESS---SBGGGG-------CEEEEEEEEEETTEEEEE
T ss_pred CEEEEECCeeEECCCCcccCChhEEC------cEEEEEeEEEcCCcEEeC
Confidence 68999999 89999999999999999 666653 367889986
No 37
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=98.86 E-value=1.1e-08 Score=97.99 Aligned_cols=101 Identities=23% Similarity=0.185 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhhccccccccccccccCCCCeEEEEEECCeE-eeecCcCccCc
Q psy12008 32 PTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHI-DISRGPMMSNT 110 (458)
Q Consensus 32 it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~~~~K~~li~~~~~~~~~~~v~vy~~g~~~-D~c~Gphv~~T 110 (458)
.+++++..++++.|++|++|+|+.-..++++||.+++.--+.+. ..++. ..+.+++++|+|+- ..|+|+||.+|
T Consensus 135 ~~~~~~~~v~~~~ne~v~~~~~v~~~~i~~EE~~~~p~~~~~~~----~~~~~-~~g~iRiV~I~did~qpCgGtHVk~T 209 (241)
T COG2872 135 DTEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKN----KVPPD-VEGKIRIVEIGDIDVQPCGGTHVKNT 209 (241)
T ss_pred cchhhHHHHHHHHHHHHHcCCeeeeeecCHHHHhhCcChhhhcc----cCCcc-ccceEEEEEECCeeccCCCCcccCCc
Confidence 38999999999999999999999999999999999876433332 22211 23489999999963 36999999999
Q ss_pred cccccccccceeeEeecCCceEEEeeccCc
Q psy12008 111 NHLGRCTIAAAQQVETDAGLFYRFQGVALP 140 (458)
Q Consensus 111 g~i~~~~i~~~f~l~~~~g~~~Ri~g~s~p 140 (458)
++|+.|+|++. .+.+...+||+-..-+
T Consensus 210 ~EIG~Iki~k~---e~k~k~~~Rv~f~~~~ 236 (241)
T COG2872 210 GEIGEIKILKT---EKKGKGNRRVYFTLGE 236 (241)
T ss_pred cceEEEEEEEE---EEecCceEEEEEEecc
Confidence 99996665333 4457788998865443
No 38
>PLN02961 alanine-tRNA ligase
Probab=98.82 E-value=3.3e-08 Score=94.72 Aligned_cols=91 Identities=18% Similarity=0.155 Sum_probs=66.8
Q ss_pred CCcEEEEEecCCCCCCCCCHHH----HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhhccccccccccccccCCCCeE
Q psy12008 15 SGSFVYDVQLSGVDNWKPTSAE----LRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKV 90 (458)
Q Consensus 15 ~~Gfyyd~~~~~~~~~~it~~d----l~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~~~~K~~li~~~~~~~~~~~v 90 (458)
.++-|.|+. . .++.++ +.+||+++|++|++++|++...++++||.++... + +-.... ..+.|
T Consensus 113 ~~~~~v~~~--~----~i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~~~~~~ea~~~~~~---~--~~~~~~---~~~~v 178 (223)
T PLN02961 113 PDGPFVEYK--G----KIPQGELDSKQDELEAEANELIAEGGKVSAAVLPYDEAAELCGG---S--LPDYIA---KDSTP 178 (223)
T ss_pred CCccceeec--c----cCCHHHHHhHHHHHHHHHHHHHHcCCceeEEEeCHHHHHHhcCC---c--CCCcCC---CCCce
Confidence 345566654 2 466544 5799999999999999999999999999886431 1 101111 14679
Q ss_pred EEEEECCeEee-ecCcCccCcccccccccc
Q psy12008 91 IVYRIKDHIDI-SRGPMMSNTNHLGRCTIA 119 (458)
Q Consensus 91 ~vy~~g~~~D~-c~Gphv~~Tg~i~~~~i~ 119 (458)
++++++++... |+|+||.||++|+.|+|+
T Consensus 179 RiV~I~~~d~~~CgGTHv~nT~eig~i~I~ 208 (223)
T PLN02961 179 RIVKIGDSPGCPCGGTHVADVSEITSVKVT 208 (223)
T ss_pred EEEEECCCccCccCCcccCchhccccEEEE
Confidence 99999997544 999999999999955543
No 39
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=98.75 E-value=9.7e-09 Score=110.09 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=51.9
Q ss_pred EeCHHHHHHHhhhCcccccccccccccCCCCeEEEEEECCeEeeeCC-CCccCcCccCcEEEEeecce
Q psy12008 357 SISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRG-PMMSNTNHLGRCTIAAVSFR 423 (458)
Q Consensus 357 ~vs~eeA~~~F~~~~~K~~ll~~~~~~~~~~~v~iy~~g~~~D~c~G-phv~~Tg~I~~f~l~~~~~g 423 (458)
.+|++||+++|++|+||.++|+ ++.++ | ||.++|+|.| |||||||.|++|+|++++++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~-~~~~~~~~~~~ph~~~t~~~~~fkl~~~~~~ 103 (545)
T PRK14799 45 SITLDEVKKAINENVLANVSIE-------NNQIV-Y-KGNKVSIIEDKVSISTNLNPKYFEILNISTH 103 (545)
T ss_pred cccHHHHHHHHhcCcceeeEee-------cCcEE-E-ccCceeecCCCCCCCCCCCcceEEEEEeccC
Confidence 3588999999999999999986 34444 4 9999999999 99999999999999999997
No 40
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=98.67 E-value=2.8e-08 Score=70.24 Aligned_cols=32 Identities=34% Similarity=0.507 Sum_probs=25.6
Q ss_pred EEEEEECC-eEeeeCCCCccCcCccCcEEEEee
Q psy12008 389 VIVYRIKD-HIDISRGPMMSNTNHLGRCTIAAV 420 (458)
Q Consensus 389 v~iy~~g~-~~D~c~Gphv~~Tg~I~~f~l~~~ 420 (458)
|++|++|+ ++|+|.||||+|||+|+.|+|++.
T Consensus 1 vRvv~i~~~~~~~C~GtHv~~T~~i~~~~i~~~ 33 (44)
T PF07973_consen 1 VRVVRIGDFDVDLCGGTHVPNTGEIGHFKILKG 33 (44)
T ss_dssp EEEEEETTTEEEEESS---SBGGGG-CEEEEEE
T ss_pred CEEEEECCeeEECCCCcccCChhEECcEEEEEe
Confidence 68999999 789999999999999999999843
No 41
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=98.56 E-value=6.3e-08 Score=68.38 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=35.4
Q ss_pred EEEEEECCe-EeeeCCCCccCcCccCcEEEEeecceEEe
Q psy12008 389 VIVYRIKDH-IDISRGPMMSNTNHLGRCTIAAVSFRFFL 426 (458)
Q Consensus 389 v~iy~~g~~-~D~c~Gphv~~Tg~I~~f~l~~~~~g~~l 426 (458)
+++|++|++ .++|.|||++||++|+.|+|++.++.+|.
T Consensus 1 vriv~i~~~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~ 39 (44)
T smart00863 1 VRVVSIGDFDVELCGGTHVPNTGEIGAFKILSVSGAYWG 39 (44)
T ss_pred CEEEEECCEEEECCCCcccCChhhCcEEEEEEEeeeecC
Confidence 479999998 89999999999999999999999988876
No 42
>KOG2105|consensus
Probab=98.48 E-value=5.5e-07 Score=86.66 Aligned_cols=145 Identities=16% Similarity=0.178 Sum_probs=107.4
Q ss_pred cccccccccccce-ecccCCCCcchhhHHHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCC
Q psy12008 253 MHRPLESDCELQL-LHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKP 331 (458)
Q Consensus 253 L~~pl~~d~~ve~-l~~~~~~g~~~~~~y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~l 331 (458)
.+.|++...+|+. +||..+.. -+.+||..||+.+.+..+|.- +-+- -+-|||.--+.++ -.++
T Consensus 86 ~~~~iePGt~V~V~VD~qkR~D----~MQQHsGQHLitAvad~~fKl--kTtS-------WelG~~~sa~e~~---~~~m 149 (415)
T KOG2105|consen 86 VNDYIEPGTTVEVAVDEQKRMD----YMQQHSGQHLITAVADHLFKL--KTTS-------WELGRFRSAIELD---TPSM 149 (415)
T ss_pred cCCCCCCCCeEEEEecHHHHhH----HHHHhcchhHHHHHHHhhhcc--ceee-------eeccceeeccccC---CCCc
Confidence 5778998888884 78776654 467999999999999999974 2211 1225787666554 2578
Q ss_pred CHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhhCccccccccc--ccccCCCCeEEEEEECCe-EeeeCCCCccC
Q psy12008 332 TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPS--IVQQSIDGKVIVYRIKDH-IDISRGPMMSN 408 (458)
Q Consensus 332 t~edl~~Ie~~m~~iI~~~~pi~~~~vs~eeA~~~F~~~~~K~~ll~~--~~~~~~~~~v~iy~~g~~-~D~c~Gphv~~ 408 (458)
|.|++.+|++.+|+.|..-+|+...+.+.++-. ++.+.. .+ +...+.++++.||+. .+.|.|+||.+
T Consensus 150 TaeqvaaieqsvNe~I~d~~~~~v~E~sl~d~e---------VeqVS~~~~~-D~haG~iRvvnI~~vDSN~CCGTHvs~ 219 (415)
T KOG2105|consen 150 TAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPE---------VEQVSGRGLP-DDHAGPIRVVNIEGVDSNMCCGTHVSN 219 (415)
T ss_pred cHHHHHHHHHHHHHHHHhccchheeecccCCcc---------hhhccCCCCc-ccccCceEEEeecCccCCccccccccc
Confidence 999999999999999999999988776654211 111111 12 111467999999996 36899999999
Q ss_pred cCccCcEEEEeecce
Q psy12008 409 TNHLGRCTIAAVSFR 423 (458)
Q Consensus 409 Tg~I~~f~l~~~~~g 423 (458)
|+.|+.++|+....|
T Consensus 220 ~Sdl~vI~ILgtekg 234 (415)
T KOG2105|consen 220 LSDLQVIKILGTEKG 234 (415)
T ss_pred hhhcceEEEeecccc
Confidence 999999999987655
No 43
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=98.42 E-value=2.3e-07 Score=65.44 Aligned_cols=36 Identities=28% Similarity=0.501 Sum_probs=31.0
Q ss_pred EEEEEECCe-EeeecCcCccCccccccccccceeeEeecCCce
Q psy12008 90 VIVYRIKDH-IDISRGPMMSNTNHLGRCTIAAAQQVETDAGLF 131 (458)
Q Consensus 90 v~vy~~g~~-~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~~g~~ 131 (458)
|++|++||+ .++|.||||+||++|+ .|+|.+.++.+
T Consensus 1 vriv~i~~~~~~~C~GtHv~~t~~I~------~i~i~~~~~~~ 37 (44)
T smart00863 1 VRVVSIGDFDVELCGGTHVPNTGEIG------AFKILSVSGAY 37 (44)
T ss_pred CEEEEECCEEEECCCCcccCChhhCc------EEEEEEEeeee
Confidence 579999998 8999999999999999 88887765443
No 44
>KOG0188|consensus
Probab=98.40 E-value=1.8e-06 Score=92.22 Aligned_cols=112 Identities=14% Similarity=0.225 Sum_probs=91.1
Q ss_pred cCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhhccccccccccccccCCCCeEEEE
Q psy12008 14 KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVY 93 (458)
Q Consensus 14 ~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~~~~K~~li~~~~~~~~~~~v~vy 93 (458)
..+-+.+||.... .+|.+++.++|..||++|.++.++...+++.++|+++-. -. ....+.. -+.|+|+
T Consensus 596 ~pdklRfDf~~k~----~lt~eql~~vE~~~ne~I~~~~~V~~~e~~l~~ak~i~g---lr-~v~~E~Y----PdpVRVV 663 (895)
T KOG0188|consen 596 APDKLRFDFSTKG----ALTKEQLKKVEDKINEFIQKNAPVYAKELPLAEAKKIPG---LR-AVFDEVY----PDPVRVV 663 (895)
T ss_pred ChhHeeeecccCC----CCCHHHHHHHHHHHHHHHhcCCceEEEecCHHHHhcCCC---cc-cccCCcc----CCceEEE
Confidence 3466889998654 699999999999999999999999999999999998522 11 1122222 2679999
Q ss_pred EECCe----EeeecCcCccCccccccccccceeeEeec---CCceEEEeeccCcccc
Q psy12008 94 RIKDH----IDISRGPMMSNTNHLGRCTIAAAQQVETD---AGLFYRFQGVALPKSI 143 (458)
Q Consensus 94 ~~g~~----~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~---~g~~~Ri~g~s~p~~~ 143 (458)
.+|.. +.+|+|+|+.+||.|+ .|-|.+. +-+..||-+++.+...
T Consensus 664 svg~~~~~svE~CgGTH~~~t~~i~------~fvI~se~~iakgirRivavTG~eA~ 714 (895)
T KOG0188|consen 664 SVGAGQLTSVEFCGGTHLTNTSHIG------DFVIVSEEGIAKGIRRIVAVTGKEAQ 714 (895)
T ss_pred EeccccccceeecCCcccccccccc------eEEEechhhhhhceeEEEEeccHHHH
Confidence 99973 6899999999999999 8888764 5678999999998887
No 45
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=98.23 E-value=2.3e-06 Score=63.50 Aligned_cols=57 Identities=39% Similarity=0.674 Sum_probs=50.4
Q ss_pred CCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceecc
Q psy12008 210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHF 268 (458)
Q Consensus 210 ~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~~ 268 (458)
.++|..+.+..|. |+.++++.++......++++++||. ++||++++..+++|+|++|
T Consensus 5 ~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~v~~~vng~-~~dL~~~l~~~~~ie~i~~ 61 (61)
T cd01667 5 LPDGSVKEFPKGT-TPLDIAKSISPGLAKKAVAAKVNGE-LVDLSRPLEEDCELEIITF 61 (61)
T ss_pred cCCCCEEEeCCCC-CHHHHHHHHHHHHHhheEEEEECCE-EecCCcCcCCCCEEEEEeC
Confidence 3567778888885 9999999988777788999999999 9999999999999999986
No 46
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=97.70 E-value=7e-05 Score=54.98 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=48.7
Q ss_pred CCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceec
Q psy12008 211 PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLH 267 (458)
Q Consensus 211 ~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~ 267 (458)
.+|..+.+.+|. |+.++++.+.......++++.+||. ++||++++.+++.++|++
T Consensus 6 ~~~~~~~~~~g~-t~~~~~~~~~~~~~~~~~~~~vn~~-~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 6 PDGSAVELPKGA-TAMDFALKIHTDLGKGFIGALVNGQ-LVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred CCCCEEEcCCCC-CHHHHHHHHHHHHHhheEEEEECCE-ECCCCcCcCCCCEEEEeC
Confidence 467888888985 9999999988776778999999999 999999999999999874
No 47
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=97.45 E-value=0.0003 Score=52.41 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=49.2
Q ss_pred CCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceec
Q psy12008 210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLH 267 (458)
Q Consensus 210 ~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~ 267 (458)
.++|+.+++..|. |..++++.++..+...++++.+||. ++|+++++.+++.+++++
T Consensus 5 ~~~g~~~~~~~~~-t~~~~~~~~~~~~~~~~va~~vng~-~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 5 TPKGEIIELPAGA-TVLDFAYAIHTEIGNRCVGAKVNGK-LVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred CCCCCEEEcCCCC-CHHHHHHHHChHhhhheEEEEECCE-ECCCCCCCCCCCEEEEEC
Confidence 4678889999996 9999998887777778899999999 999999999999999874
No 48
>KOG2105|consensus
Probab=96.39 E-value=0.037 Score=54.04 Aligned_cols=101 Identities=19% Similarity=0.238 Sum_probs=71.4
Q ss_pred ccCCCccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhhcccccccccc--ccccC
Q psy12008 8 RGKVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPS--IVQQS 85 (458)
Q Consensus 8 ~~~~~~~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~~~~K~~li~~--~~~~~ 85 (458)
+....+.=+||.--+.+.- .++|.+++.+||+.+|+.|..-+|+...+.+.++-. ++.... .+ ..
T Consensus 128 lkTtSWelG~~~sa~e~~~---~~mTaeqvaaieqsvNe~I~d~~~~~v~E~sl~d~e---------VeqVS~~~~~-D~ 194 (415)
T KOG2105|consen 128 LKTTSWELGRFRSAIELDT---PSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPE---------VEQVSGRGLP-DD 194 (415)
T ss_pred cceeeeeccceeeccccCC---CCccHHHHHHHHHHHHHHHHhccchheeecccCCcc---------hhhccCCCCc-cc
Confidence 3444466678877666554 378999999999999999999999988877755311 111111 11 00
Q ss_pred CCCeEEEEEECCe-EeeecCcCccCccccccccccce
Q psy12008 86 IDGKVIVYRIKDH-IDISRGPMMSNTNHLGRCTIAAA 121 (458)
Q Consensus 86 ~~~~v~vy~~g~~-~D~c~Gphv~~Tg~i~~~~i~~~ 121 (458)
..+.++++.+++. ...|+|+||.+|+.|+.|+|+..
T Consensus 195 haG~iRvvnI~~vDSN~CCGTHvs~~Sdl~vI~ILgt 231 (415)
T KOG2105|consen 195 HAGPIRVVNIEGVDSNMCCGTHVSNLSDLQVIKILGT 231 (415)
T ss_pred ccCceEEEeecCccCCccccccccchhhcceEEEeec
Confidence 2357999999986 36899999999999996666543
No 49
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=95.28 E-value=0.037 Score=60.90 Aligned_cols=93 Identities=12% Similarity=0.148 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHH--HHHhc-CcceeEEEEeeCCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecc
Q psy12008 178 IVQKQNDIFNKEFKRQ--QNAVG-RIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMH 254 (458)
Q Consensus 178 ~~~~~~~l~e~l~~~q--~~~i~-~~~~i~v~~~~~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~ 254 (458)
|+.+.++..+...+.+ .+.+. ++-..+|.+- -|.|..+..+.|. ||.|.|-.+..+.+...+.|+|||. +++|+
T Consensus 359 Wlr~lle~q~~~~d~~ef~e~~k~dlf~d~Vyvf-TPkG~vi~LP~Ga-tplDFAY~vHt~iG~~c~gAkVnG~-ivpl~ 435 (701)
T COG0317 359 WLRQLLEWQEESADSGEFLEQLKSDLFPDRVYVF-TPKGKVIDLPKGA-TPLDFAYAVHTDIGHRCIGAKVNGR-IVPLT 435 (701)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHhhcccCceEEEE-CCCCCEEeCCCCC-cchhhhhhhhchhcceeeEEEECCE-Eeccc
Confidence 6666666666554331 22221 2323346553 3578999999995 9999999999899999999999999 99999
Q ss_pred cccccccccceecccCCCC
Q psy12008 255 RPLESDCELQLLHFYDSDP 273 (458)
Q Consensus 255 ~pl~~d~~ve~l~~~~~~g 273 (458)
++|..+..||+++-.....
T Consensus 436 ~~Lk~Gd~VEIit~k~~~P 454 (701)
T COG0317 436 TKLQTGDQVEIITSKHAGP 454 (701)
T ss_pred eecCCCCEEEEEeCCCCCC
Confidence 9999999999999776443
No 50
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=94.95 E-value=0.028 Score=62.58 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=56.4
Q ss_pred EEEEeeCCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceecccC
Q psy12008 204 NVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYD 270 (458)
Q Consensus 204 ~v~~~~~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~~~~ 270 (458)
+|.+- -|.|..+..+.|. ||.|.|-.+....+...+.|+|||. +++|.++|..+..||+++-..
T Consensus 387 ~v~Vf-TP~G~v~~LP~Ga-T~lDFAY~iHt~iG~~c~gAkVNg~-~vpL~~~L~~Gd~VeIiT~~~ 450 (702)
T PRK11092 387 EIYVF-TPEGRIVELPAGA-TPVDFAYAVHTDIGHACVGARVDRQ-PYPLSQPLTSGQTVEIITAPG 450 (702)
T ss_pred eEEEE-CCCCCEEeCCCCC-chhhhhHhhCchhhceeEEEEECCE-ECCCCccCCCCCEEEEEeCCC
Confidence 35442 3689999999995 9999999999999999999999999 999999999999999998654
No 51
>PRK07440 hypothetical protein; Provisional
Probab=94.19 E-value=0.19 Score=39.00 Aligned_cols=59 Identities=10% Similarity=0.115 Sum_probs=47.9
Q ss_pred eeEEEEeeCCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEee----cccccccccccceecc
Q psy12008 202 KINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF 268 (458)
Q Consensus 202 ~i~v~~~~~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~d----L~~pl~~d~~ve~l~~ 268 (458)
.++|++ +|+.+++..+. |..++.+.+.. ....+|+.+||+ +.+ -.++|.++..||+++|
T Consensus 4 ~m~i~v----NG~~~~~~~~~-tl~~lL~~l~~--~~~~vav~~N~~-iv~r~~w~~~~L~~gD~IEIv~~ 66 (70)
T PRK07440 4 PITLQV----NGETRTCSSGT-SLPDLLQQLGF--NPRLVAVEYNGE-ILHRQFWEQTQVQPGDRLEIVTI 66 (70)
T ss_pred ceEEEE----CCEEEEcCCCC-CHHHHHHHcCC--CCCeEEEEECCE-EeCHHHcCceecCCCCEEEEEEE
Confidence 456776 68888898885 99999887654 457899999999 888 5778999999999886
No 52
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=94.02 E-value=0.2 Score=38.83 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=46.2
Q ss_pred eeEEEEeeCCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceecc
Q psy12008 202 KINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHF 268 (458)
Q Consensus 202 ~i~v~~~~~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~~ 268 (458)
.++|++-+......++...+. |..++.+++... ...+++.+||+ +...++++.++.+|+++.+
T Consensus 4 mm~v~vng~~~~~~~~~~~~~-tv~~ll~~l~~~--~~~v~v~vNg~-iv~~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 4 MIRVKVIGRGIEKEIEWRKGM-KVADILRAVGFN--TESAIAKVNGK-VALEDDPVKDGDYVEVIPV 66 (70)
T ss_pred EEEEEEeccccceEEEcCCCC-cHHHHHHHcCCC--CccEEEEECCE-ECCCCcCcCCCCEEEEEcc
Confidence 355666111112366778885 999999988653 45688899999 8888999999999999875
No 53
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=93.77 E-value=0.25 Score=37.60 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=42.9
Q ss_pred CCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEee----cccccccccccceecc
Q psy12008 212 EDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF 268 (458)
Q Consensus 212 ~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~d----L~~pl~~d~~ve~l~~ 268 (458)
+|+.+++..+. |+.++...+.. ....+++.+||+ +++ ..++|.++..||++.+
T Consensus 6 NG~~~~~~~~~-tl~~lL~~l~~--~~~~vav~vNg~-iv~r~~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 6 NGEPRELPDGE-SVAALLAREGL--AGRRVAVEVNGE-IVPRSQHASTALREGDVVEIVHA 62 (66)
T ss_pred CCeEEEcCCCC-CHHHHHHhcCC--CCCeEEEEECCe-EeCHHHcCcccCCCCCEEEEEEE
Confidence 68888999995 99999887654 345567779998 787 6889999999999876
No 54
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=93.18 E-value=0.23 Score=37.82 Aligned_cols=53 Identities=11% Similarity=0.156 Sum_probs=43.3
Q ss_pred CCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecc----cccccccccceecc
Q psy12008 212 EDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMH----RPLESDCELQLLHF 268 (458)
Q Consensus 212 ~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~----~pl~~d~~ve~l~~ 268 (458)
+|..++++.+. |..++.+.+... ...+++.+||+ +.+.. ++|.++.+|+++.+
T Consensus 5 Ng~~~~~~~~~-tv~~ll~~l~~~--~~~i~V~vNg~-~v~~~~~~~~~L~~gD~V~ii~~ 61 (65)
T cd00565 5 NGEPREVEEGA-TLAELLEELGLD--PRGVAVALNGE-IVPRSEWASTPLQDGDRIEIVTA 61 (65)
T ss_pred CCeEEEcCCCC-CHHHHHHHcCCC--CCcEEEEECCE-EcCHHHcCceecCCCCEEEEEEe
Confidence 57888888885 999999887643 45567789999 88877 89999999999875
No 55
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=92.92 E-value=0.33 Score=37.30 Aligned_cols=54 Identities=7% Similarity=0.146 Sum_probs=42.9
Q ss_pred CCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecc----cccccccccceecc
Q psy12008 212 EDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMH----RPLESDCELQLLHF 268 (458)
Q Consensus 212 ~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~----~pl~~d~~ve~l~~ 268 (458)
.|+......+.+|..++.+.+.. ....+|+.+|++ +.+-. ++|.++..||+++|
T Consensus 6 NG~~~~~~~~~~tv~~lL~~l~~--~~~~vav~vN~~-iv~r~~w~~~~L~~gD~iEIv~~ 63 (67)
T PRK07696 6 NGNQIEVPESVKTVAELLTHLEL--DNKIVVVERNKD-ILQKDDHTDTSVFDGDQIEIVTF 63 (67)
T ss_pred CCEEEEcCCCcccHHHHHHHcCC--CCCeEEEEECCE-EeCHHHcCceecCCCCEEEEEEE
Confidence 57777888774489898887654 456789999999 88754 78999999999886
No 56
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=92.91 E-value=0.11 Score=58.04 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=56.4
Q ss_pred EEEEeeCCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceecccCC
Q psy12008 204 NVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDS 271 (458)
Q Consensus 204 ~v~~~~~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~~~~~ 271 (458)
+|.+- -|+|..+..+.|. |+.|.|-.+....+...+.|+|||. .++++++|..+..||+++-...
T Consensus 405 ~V~Vf-TPkG~~~~Lp~ga-T~lDfAy~iHt~iG~~~~gAkvng~-~v~l~~~L~~GD~VeIits~~~ 469 (743)
T PRK10872 405 RVYVF-TPKGDVVDLPAGS-TPLDFAYHIHSDVGHRCIGAKIGGR-IVPFTYQLQMGDQIEIITQKQP 469 (743)
T ss_pred eEEEE-CCCCCeEEcCCCC-cHHHHHHHHhHHHHhhceEEEECCE-ECCCCcCCCCCCEEEEEeCCCC
Confidence 35543 3688999999995 9999999999899999999999999 9999999999999999986543
No 57
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=92.56 E-value=0.49 Score=36.61 Aligned_cols=53 Identities=9% Similarity=0.161 Sum_probs=44.1
Q ss_pred CCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEee----cccccccccccceecc
Q psy12008 212 EDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF 268 (458)
Q Consensus 212 ~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~d----L~~pl~~d~~ve~l~~ 268 (458)
+|+..+...+ +|..|+.+.+.. ....+++.+||+ +++ .++.+++...||.+.+
T Consensus 8 ng~~~e~~~~-~tv~dLL~~l~~--~~~~vav~vNg~-iVpr~~~~~~~l~~gD~ievv~~ 64 (68)
T COG2104 8 NGKEVEIAEG-TTVADLLAQLGL--NPEGVAVAVNGE-IVPRSQWADTILKEGDRIEVVRV 64 (68)
T ss_pred CCEEEEcCCC-CcHHHHHHHhCC--CCceEEEEECCE-EccchhhhhccccCCCEEEEEEe
Confidence 5888888988 599999888754 457899999999 898 7888888888988765
No 58
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=92.54 E-value=0.15 Score=56.90 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=56.7
Q ss_pred EEEEeeCCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceecccCC
Q psy12008 204 NVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDS 271 (458)
Q Consensus 204 ~v~~~~~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~~~~~ 271 (458)
+|.+- -|+|..+.++.|. |+.|+|-.+....+...+.|+|||. .++++++|..+..||+++-+..
T Consensus 361 ~i~vf-TPkG~~~~lp~gs-t~~DfAy~ih~~~g~~~~~a~vng~-~v~l~~~l~~gd~vei~t~~~~ 425 (683)
T TIGR00691 361 EIYVF-TPKGDVVELPSGS-TPVDFAYAVHTDVGNKCTGAKVNGK-IVPLDKELENGDVVEIITGKNS 425 (683)
T ss_pred ceEEE-CCCCeEEEcCCCC-CHHHHHHHHhHHhHhceeEEEECCE-ECCCCccCCCCCEEEEEeCCCC
Confidence 34442 3689999999995 9999999999889999999999999 9999999999999999986654
No 59
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=92.28 E-value=0.45 Score=35.99 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=41.7
Q ss_pred CCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeec----ccccccccccceecc
Q psy12008 212 EDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDM----HRPLESDCELQLLHF 268 (458)
Q Consensus 212 ~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL----~~pl~~d~~ve~l~~ 268 (458)
+|+.++...+. |+.++...+... +.+++.+||. +++. .++|.++.+|+++.+
T Consensus 6 Ng~~~~~~~~~-tl~~ll~~l~~~---~~~~v~vN~~-~v~~~~~~~~~L~~gD~vei~~~ 61 (65)
T PRK06944 6 NQQTLSLPDGA-TVADALAAYGAR---PPFAVAVNGD-FVARTQHAARALAAGDRLDLVQP 61 (65)
T ss_pred CCEEEECCCCC-cHHHHHHhhCCC---CCeEEEECCE-EcCchhcccccCCCCCEEEEEee
Confidence 68888888885 899998887653 4578899999 8864 678888889999875
No 60
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=91.68 E-value=0.7 Score=35.29 Aligned_cols=53 Identities=8% Similarity=0.136 Sum_probs=42.2
Q ss_pred CCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEee----cccccccccccceecc
Q psy12008 212 EDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF 268 (458)
Q Consensus 212 ~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~d----L~~pl~~d~~ve~l~~ 268 (458)
+|+.+.+..+. |+.++.+.+... .+.+++.+|++ +.+ -.++|.++..|+++.+
T Consensus 6 Ng~~~~~~~~~-tl~~ll~~l~~~--~~~vaVavN~~-iv~r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 6 NDQPMQCAAGQ-TVHELLEQLNQL--QPGAALAINQQ-IIPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred CCeEEEcCCCC-CHHHHHHHcCCC--CCcEEEEECCE-EeChHHcCccccCCCCEEEEEEE
Confidence 68888888885 899998876553 45688899999 876 3557888889999876
No 61
>PRK06437 hypothetical protein; Provisional
Probab=91.47 E-value=0.6 Score=35.89 Aligned_cols=52 Identities=8% Similarity=0.217 Sum_probs=41.8
Q ss_pred cEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceeccc
Q psy12008 214 AELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 269 (458)
Q Consensus 214 ~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~~~ 269 (458)
+.++.+.+. |..++.+.+... ..-+++.+||. +.+..++|.++.+|+++.+-
T Consensus 13 ~~~~i~~~~-tv~dLL~~Lgi~--~~~vaV~vNg~-iv~~~~~L~dgD~Veiv~~V 64 (67)
T PRK06437 13 KTIEIDHEL-TVNDIIKDLGLD--EEEYVVIVNGS-PVLEDHNVKKEDDVLILEVF 64 (67)
T ss_pred eEEEcCCCC-cHHHHHHHcCCC--CccEEEEECCE-ECCCceEcCCCCEEEEEecc
Confidence 456777885 999999988653 34557779999 99999999999999998763
No 62
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=91.21 E-value=0.68 Score=35.16 Aligned_cols=52 Identities=12% Similarity=0.052 Sum_probs=40.7
Q ss_pred CCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeec----ccccccccccceecc
Q psy12008 212 EDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDM----HRPLESDCELQLLHF 268 (458)
Q Consensus 212 ~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL----~~pl~~d~~ve~l~~ 268 (458)
+|+.+.. .. +|+.++.+.+.. ....+++.+|++ +++. +++|.++.+|+++.+
T Consensus 6 Ng~~~~~-~~-~tl~~Ll~~l~~--~~~~vavavN~~-iv~~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 6 NGETLQT-EA-TTLALLLAELDY--EGNWLATAVNGE-LVHKEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred CCeEEEc-Cc-CcHHHHHHHcCC--CCCeEEEEECCE-EcCHHHcCccccCCCCEEEEEEe
Confidence 5677777 34 489898887754 346788999999 8886 779999999999876
No 63
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=90.65 E-value=1.2 Score=35.89 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=46.0
Q ss_pred eeEEEEeeCCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeec----ccccccccccceecc
Q psy12008 202 KINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDM----HRPLESDCELQLLHF 268 (458)
Q Consensus 202 ~i~v~~~~~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL----~~pl~~d~~ve~l~~ 268 (458)
.++|++ +|....+.++. |..++...+. ++...+|+.+||+ +.+- .+.|.++..||++.|
T Consensus 18 ~m~I~V----NG~~~~~~~~~-tl~~LL~~l~--~~~~~vAVevNg~-iVpr~~w~~t~L~egD~IEIv~~ 80 (84)
T PRK06083 18 LITISI----NDQSIQVDISS-SLAQIIAQLS--LPELGCVFAINNQ-VVPRSEWQSTVLSSGDAISLFQA 80 (84)
T ss_pred eEEEEE----CCeEEEcCCCC-cHHHHHHHcC--CCCceEEEEECCE-EeCHHHcCcccCCCCCEEEEEEE
Confidence 456666 68888999986 8988888764 4556788899999 7773 557888888999876
No 64
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=87.23 E-value=1.7 Score=32.83 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=41.6
Q ss_pred CCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEee----cccccccccccceecc
Q psy12008 212 EDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF 268 (458)
Q Consensus 212 ~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~d----L~~pl~~d~~ve~l~~ 268 (458)
+|+.+....+. |..++.+.+... ...+++.+||+ +.+ -.++|.++.+|+++.+
T Consensus 4 Ng~~~~~~~~~-tv~~ll~~l~~~--~~~v~v~vN~~-iv~~~~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 4 NGEPVEVEDGL-TLAALLESLGLD--PRRVAVAVNGE-IVPRSEWDDTILKEGDRIEIVTF 60 (64)
T ss_pred CCeEEEcCCCC-cHHHHHHHcCCC--CCeEEEEECCE-EcCHHHcCceecCCCCEEEEEEe
Confidence 57788888885 899999887654 46788899999 765 2457888889998875
No 65
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=84.12 E-value=2.8 Score=31.85 Aligned_cols=53 Identities=8% Similarity=0.134 Sum_probs=39.8
Q ss_pred CCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEee---cccccccccccceecc
Q psy12008 212 EDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD---MHRPLESDCELQLLHF 268 (458)
Q Consensus 212 ~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~d---L~~pl~~d~~ve~l~~ 268 (458)
+|..+....+. |..++...+.. +...+++.+||. +.+ ..+.|.++..||++.+
T Consensus 6 NG~~~~~~~~~-tl~~ll~~l~~--~~~~vav~~N~~-iv~r~~~~~~L~~gD~ieIv~~ 61 (65)
T PRK05863 6 NEEQVEVDEQT-TVAALLDSLGF--PEKGIAVAVDWS-VLPRSDWATKLRDGARLEVVTA 61 (65)
T ss_pred CCEEEEcCCCC-cHHHHHHHcCC--CCCcEEEEECCc-CcChhHhhhhcCCCCEEEEEee
Confidence 67788888885 99999888754 456788889998 443 2346888888998875
No 66
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=82.53 E-value=3.2 Score=32.90 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=38.1
Q ss_pred cEEEcccCCCCHHHHHhhcccccc---C--ceEEEEECCeEEeecccccccccccceec
Q psy12008 214 AELIMNKNLSTPYNCAQHMSEMLC---D--RSVLALIDGVKLWDMHRPLESDCELQLLH 267 (458)
Q Consensus 214 ~~~~~~~g~tT~~~iak~i~~~l~---~--~~v~a~vng~~~~dL~~pl~~d~~ve~l~ 267 (458)
..+++..+. |..++.+.+....+ . ..++..+||+ +.+.++++.++.+|.++-
T Consensus 21 ~~~~~~~~~-tv~~L~~~l~~~~p~l~~~~~~~~vavN~~-~v~~~~~l~dgDeVai~P 77 (82)
T PLN02799 21 MTLELPAGS-TTADCLAELVAKFPSLEEVRSCCVLALNEE-YTTESAALKDGDELAIIP 77 (82)
T ss_pred EEEECCCCC-cHHHHHHHHHHHChhHHHHhhCcEEEECCE-EcCCCcCcCCCCEEEEeC
Confidence 344555664 88888888754331 1 4467789999 889999999999998865
No 67
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=78.84 E-value=3.6 Score=32.09 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=39.1
Q ss_pred EcccCCCCHHHHHhhcccccc------CceEEEEECCeEEeecccccccccccceecc
Q psy12008 217 IMNKNLSTPYNCAQHMSEMLC------DRSVLALIDGVKLWDMHRPLESDCELQLLHF 268 (458)
Q Consensus 217 ~~~~g~tT~~~iak~i~~~l~------~~~v~a~vng~~~~dL~~pl~~d~~ve~l~~ 268 (458)
.+..+ +|..++.+.+..+++ ...+++.|||. .++.++++.++.+|.++..
T Consensus 21 ~~~~~-~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~-~v~~~~~l~~gD~v~i~pp 76 (80)
T cd00754 21 ELPEG-ATVGELLDALEARYPGLLEELLARVRIAVNGE-YVRLDTPLKDGDEVAIIPP 76 (80)
T ss_pred ECCCC-CcHHHHHHHHHHHCchHHHhhhhcEEEEECCe-EcCCCcccCCCCEEEEeCC
Confidence 33445 499999988876543 45788899999 9999999999999988753
No 68
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=78.17 E-value=3.7 Score=31.74 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=40.6
Q ss_pred EEcccCCCCHHHHHhhcccccc----CceEEEEECCeEEeec---ccccccccccceecc
Q psy12008 216 LIMNKNLSTPYNCAQHMSEMLC----DRSVLALIDGVKLWDM---HRPLESDCELQLLHF 268 (458)
Q Consensus 216 ~~~~~g~tT~~~iak~i~~~l~----~~~v~a~vng~~~~dL---~~pl~~d~~ve~l~~ 268 (458)
.....+. |..++.+.+...++ ...+++.|||+ +.+. ++++.++.+|.++..
T Consensus 16 ~~~~~~~-tv~~ll~~l~~~~p~~~~~~~~~v~vN~~-~v~~~~~~~~l~~gD~V~i~pp 73 (77)
T PF02597_consen 16 IEVPEGS-TVRDLLEALAERYPELALRDRVAVAVNGE-IVPDDGLDTPLKDGDEVAILPP 73 (77)
T ss_dssp EEESSTS-BHHHHHHHHCHHTGGGHTTTTEEEEETTE-EEGGGTTTSBEETTEEEEEEES
T ss_pred EecCCCC-cHHHHHHHHHhhccccccCccEEEEECCE-EcCCccCCcCcCCCCEEEEECC
Confidence 3445564 99999999887764 26788899999 8888 999999999988753
No 69
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=77.12 E-value=5.7 Score=40.09 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=43.3
Q ss_pred CCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEee----cccccccccccceecc
Q psy12008 212 EDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF 268 (458)
Q Consensus 212 ~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~d----L~~pl~~d~~ve~l~~ 268 (458)
+|+.++...++ |+.++.+.+... ...+++.+||+ +++ ..++|.++..||++.+
T Consensus 6 NGk~~el~e~~-TL~dLL~~L~i~--~~~VAVeVNge-IVpr~~w~~t~LkeGD~IEII~~ 62 (326)
T PRK11840 6 NGEPRQVPAGL-TIAALLAELGLA--PKKVAVERNLE-IVPRSEYGQVALEEGDELEIVHF 62 (326)
T ss_pred CCEEEecCCCC-cHHHHHHHcCCC--CCeEEEEECCE-ECCHHHcCccccCCCCEEEEEEE
Confidence 68888888885 999999887653 45677779999 888 5668999999999887
No 70
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=76.69 E-value=5.1 Score=31.81 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHH
Q psy12008 30 WKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEAL 67 (458)
Q Consensus 30 ~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~l 67 (458)
.++|-+.+..|.++||++.+.++-=+|+.|+.+-..++
T Consensus 43 ~pFs~d~IN~vT~~mN~LAk~givP~Rk~VT~eMV~EY 80 (84)
T PF10752_consen 43 EPFSTDKINEVTKEMNELAKQGIVPTRKYVTVEMVKEY 80 (84)
T ss_pred CCCcHHHHHHHHHHHHHHHHcCCCCcchhccHHHHHHH
Confidence 58999999999999999999998889999998765543
No 71
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=74.99 E-value=4.5 Score=31.94 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=38.5
Q ss_pred EEEcccCCCCHHHHHhhccccccCce---EEEEECCeEEeecccccccccccceec
Q psy12008 215 ELIMNKNLSTPYNCAQHMSEMLCDRS---VLALIDGVKLWDMHRPLESDCELQLLH 267 (458)
Q Consensus 215 ~~~~~~g~tT~~~iak~i~~~l~~~~---v~a~vng~~~~dL~~pl~~d~~ve~l~ 267 (458)
...+..| +|..|+|..+...+++.. +.++ |++ ...++++|.+...+++++
T Consensus 24 ~~~l~~G-aTv~D~A~~IHtdi~~~f~~Ai~~k-~~~-~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 24 AFLLPKG-STARDLAYAIHTDIGDGFLHAIDAR-TGR-RVGEDYELKHRDVIKIVS 76 (76)
T ss_pred eEEECCC-CCHHHHHHHHHHHHHhcceeeEEee-CCE-EeCCCcEecCCCEEEEeC
Confidence 4566778 499999999877776553 3456 998 999999999887888764
No 72
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=73.84 E-value=3.5 Score=32.50 Aligned_cols=51 Identities=16% Similarity=0.179 Sum_probs=39.3
Q ss_pred cEEEcccCCCCHHHHHhhccccccCceEEEE-------ECCeEEeeccccccccccccee
Q psy12008 214 AELIMNKNLSTPYNCAQHMSEMLCDRSVLAL-------IDGVKLWDMHRPLESDCELQLL 266 (458)
Q Consensus 214 ~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~-------vng~~~~dL~~pl~~d~~ve~l 266 (458)
..+.+..|. |..|+|..+...+......|. ++|+ -+.++++|.+...|+++
T Consensus 17 ~~liL~~Ga-TV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq-~Vgl~~~L~d~DvVeI~ 74 (75)
T cd01666 17 EPVILRRGS-TVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQ-RVGLDHVLEDEDVVQIV 74 (75)
T ss_pred CCEEECCCC-CHHHHHHHHHHHHHHhCCeeEEeccCCcCCCe-ECCCCCEecCCCEEEEe
Confidence 356778884 999999998876655555555 4888 89999999988778765
No 73
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=72.58 E-value=2.2 Score=40.67 Aligned_cols=60 Identities=22% Similarity=0.394 Sum_probs=44.1
Q ss_pred EEEEeeCCCCcEEEcccCCCCHHHHHhhcccccc-CceEEEEECCeEEeec-ccccccccccceecccCCCCc
Q psy12008 204 NVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLC-DRSVLALIDGVKLWDM-HRPLESDCELQLLHFYDSDPY 274 (458)
Q Consensus 204 ~v~~~~~~~g~~~~~~~g~tT~~~iak~i~~~l~-~~~v~a~vng~~~~dL-~~pl~~d~~ve~l~~~~~~g~ 274 (458)
.+.+++++||+ .+|+||+ |+.+...++ ..++++..|++ +.+- ..|.++.+. ++|+++++.
T Consensus 7 ~~iiIgIaG~S----gSGKTTv---a~~l~~~~~~~~~~~I~~D~Y-Yk~~~~~~~~~~~~---~n~d~p~A~ 68 (218)
T COG0572 7 KVIIIGIAGGS----GSGKTTV---AKELSEQLGVEKVVVISLDDY-YKDQSHLPFEERNK---INYDHPEAF 68 (218)
T ss_pred ceEEEEEeCCC----CCCHHHH---HHHHHHHhCcCcceEeecccc-ccchhhcCHhhcCC---cCccChhhh
Confidence 35667888998 8999887 888777775 57888899999 8885 556655555 456766653
No 74
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=69.89 E-value=9.5 Score=30.31 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHH
Q psy12008 329 WKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEAL 366 (458)
Q Consensus 329 ~~lt~edl~~Ie~~m~~iI~~~~pi~~~~vs~eeA~~~ 366 (458)
.++|-+.+..|.++||++.+...-=.|..||.+-..++
T Consensus 43 ~pFs~d~IN~vT~~mN~LAk~givP~Rk~VT~eMV~EY 80 (84)
T PF10752_consen 43 EPFSTDKINEVTKEMNELAKQGIVPTRKYVTVEMVKEY 80 (84)
T ss_pred CCCcHHHHHHHHHHHHHHHHcCCCCcchhccHHHHHHH
Confidence 68999999999999999999998888999998866664
No 75
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=61.45 E-value=25 Score=26.18 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=38.3
Q ss_pred CCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceec
Q psy12008 212 EDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLH 267 (458)
Q Consensus 212 ~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~ 267 (458)
.|+.+....+. |++++.+.+.+. +-++.+||. ...-+.+|.++.+|-||.
T Consensus 6 N~k~~~~~~~~-tl~~lr~~~k~~----~DI~I~NGF-~~~~d~~L~e~D~v~~Ik 55 (57)
T PF14453_consen 6 NEKEIETEENT-TLFELRKESKPD----ADIVILNGF-PTKEDIELKEGDEVFLIK 55 (57)
T ss_pred CCEEEEcCCCc-CHHHHHHhhCCC----CCEEEEcCc-ccCCccccCCCCEEEEEe
Confidence 68888888885 999998887653 335578998 777888888888777653
No 76
>PRK01777 hypothetical protein; Validated
Probab=59.63 E-value=17 Score=29.97 Aligned_cols=57 Identities=11% Similarity=0.003 Sum_probs=40.8
Q ss_pred EEEcccCCCCHHHHHhhccccccCc-e----EEEEECCeEEeecccccccccccceecccCCCC
Q psy12008 215 ELIMNKNLSTPYNCAQHMSEMLCDR-S----VLALIDGVKLWDMHRPLESDCELQLLHFYDSDP 273 (458)
Q Consensus 215 ~~~~~~g~tT~~~iak~i~~~l~~~-~----v~a~vng~~~~dL~~pl~~d~~ve~l~~~~~~g 273 (458)
.+++..|+ |..++.+.+......+ + ...-|||. ..+++++|.++..||++.==..+.
T Consensus 20 ~l~vp~Gt-Tv~dal~~sgi~~~~pei~~~~~~vgI~Gk-~v~~d~~L~dGDRVeIyrPL~~DP 81 (95)
T PRK01777 20 RLTLQEGA-TVEEAIRASGLLELRTDIDLAKNKVGIYSR-PAKLTDVLRDGDRVEIYRPLLADP 81 (95)
T ss_pred EEEcCCCC-cHHHHHHHcCCCccCcccccccceEEEeCe-ECCCCCcCCCCCEEEEecCCCCCH
Confidence 45678885 9999998876532211 1 35668999 999999999999999754333444
No 77
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=56.49 E-value=23 Score=27.74 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=33.5
Q ss_pred CCHHHHHhhcccccc-----CceEEEEECCeEEeeccccccccccccee
Q psy12008 223 STPYNCAQHMSEMLC-----DRSVLALIDGVKLWDMHRPLESDCELQLL 266 (458)
Q Consensus 223 tT~~~iak~i~~~l~-----~~~v~a~vng~~~~dL~~pl~~d~~ve~l 266 (458)
+|..++...+...++ ...+.+.+|++ +.+.++++.++.+|.++
T Consensus 27 ~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~-~v~~~~~l~dgDevai~ 74 (80)
T TIGR01682 27 TTVGELKEHLAKEGPELAASRGQVMVAVNEE-YVTDDALLNEGDEVAFI 74 (80)
T ss_pred cCHHHHHHHHHHhCchhhhhccceEEEECCE-EcCCCcCcCCCCEEEEe
Confidence 488888888765543 24567889999 88889999998888875
No 78
>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]
Probab=51.97 E-value=79 Score=28.46 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=39.5
Q ss_pred HHhhHHHHHHHHHHHHcCCCcEEEEeecC-CCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy12008 280 FWRSCSIMLGSVLSNAFKDNVEVQLHSFP-SPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAY 348 (458)
Q Consensus 280 y~hS~~~lL~~A~~~~f~~~~~v~v~~~~-g~~i~~ggfy~d~~~~~~~~~~lt~edl~~Ie~~m~~iI~ 348 (458)
=-||+.||++.-+++...+..++. -.|+ |- .-|||.-+. + .+=+.+-++.+++.|+++++
T Consensus 52 ~iHTlEHL~A~~iRnh~~g~~~iI-D~SPMGC---rTGFYm~l~-G----~~~~~~i~~~~~~~m~dvl~ 112 (161)
T COG1854 52 GIHTLEHLLAGFIRNHLNGNVEII-DISPMGC---RTGFYMILI-G----TPTSQDIADVLEATMKDVLK 112 (161)
T ss_pred chhhHHHHHHHHHHhcccCceeEE-EecCccc---ccceEEEEE-C----CCCHHHHHHHHHHHHHHHHc
Confidence 379999999999999876533331 2222 22 237998664 3 23345666778888888876
No 79
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=43.30 E-value=43 Score=35.40 Aligned_cols=39 Identities=13% Similarity=0.040 Sum_probs=25.4
Q ss_pred eeCCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEe
Q psy12008 208 KGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLW 251 (458)
Q Consensus 208 ~~~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~ 251 (458)
+++.|++ -+||||+......+-...+..++.+.+|+. +.
T Consensus 215 IGIsG~q----GSGKSTLa~~L~~lL~~~g~~vgvISiDDf-YL 253 (460)
T PLN03046 215 IGFSAPQ----GCGKTTLVFALDYLFRVTGRKSATLSIDDF-YL 253 (460)
T ss_pred EEEECCC----CCCHHHHHHHHHHHhcccCCceEEEEECCc-cC
Confidence 4556666 789999855544433323456788899998 64
No 80
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=38.71 E-value=57 Score=25.87 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=31.1
Q ss_pred CCHHHHHhhccccccC-------------ceEEEEECCeEEeeccc--cccccccccee
Q psy12008 223 STPYNCAQHMSEMLCD-------------RSVLALIDGVKLWDMHR--PLESDCELQLL 266 (458)
Q Consensus 223 tT~~~iak~i~~~l~~-------------~~v~a~vng~~~~dL~~--pl~~d~~ve~l 266 (458)
+|..++.+.+...++. +.+...|||+ ..+-.. ++.++.+|.++
T Consensus 25 ~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~-~v~~~~~~~l~dgdev~i~ 82 (88)
T TIGR01687 25 KTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGR-NVDWGLGTELKDGDVVAIF 82 (88)
T ss_pred CCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCE-ecCccCCCCCCCCCEEEEe
Confidence 4999998888655431 2377889999 766544 88888888765
No 81
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=34.77 E-value=76 Score=24.91 Aligned_cols=51 Identities=16% Similarity=0.033 Sum_probs=37.9
Q ss_pred cEEEcccCCCCHHHHHhhccccccCceEEEEECC-eEEeeccccccccccccee
Q psy12008 214 AELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDG-VKLWDMHRPLESDCELQLL 266 (458)
Q Consensus 214 ~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng-~~~~dL~~pl~~d~~ve~l 266 (458)
....+.+| +|..++|..+...+.+...-|.+-| + ....++.+.+..-++++
T Consensus 24 ~~~~l~~g-~tv~d~a~~IH~d~~~~F~~A~v~~~~-~vg~d~~l~d~DVv~i~ 75 (76)
T cd04938 24 DCVLVKKG-TTVGDVARKIHGDLEKGFIEAVGGRRR-LEGKDVILGKNDILKFK 75 (76)
T ss_pred eeEEEcCC-CCHHHHHHHHhHHHHhccEEEEEccCE-EECCCEEecCCCEEEEE
Confidence 34566778 4999999999888877777777766 5 67788888765555554
No 82
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=33.80 E-value=1e+02 Score=24.23 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=30.9
Q ss_pred CCHHHHHhhcccccc-------CceEEEEECCeEEeeccccccccccccee
Q psy12008 223 STPYNCAQHMSEMLC-------DRSVLALIDGVKLWDMHRPLESDCELQLL 266 (458)
Q Consensus 223 tT~~~iak~i~~~l~-------~~~v~a~vng~~~~dL~~pl~~d~~ve~l 266 (458)
+|..++.+.+..+++ ..-+..-||+. +.++++++.++.+|.++
T Consensus 26 ~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~-~~~~~~~l~dgDeVai~ 75 (81)
T PRK11130 26 PTVEALRQHLAQKGDRWALALEDGKLLAAVNQT-LVSFDHPLTDGDEVAFF 75 (81)
T ss_pred CCHHHHHHHHHHhCccHHhhhcCCCEEEEECCE-EcCCCCCCCCCCEEEEe
Confidence 487777776654332 23356778999 88999999998888764
No 83
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=27.70 E-value=1.8e+02 Score=29.15 Aligned_cols=43 Identities=9% Similarity=0.060 Sum_probs=31.7
Q ss_pred ceeEEEEeeCCCCcEEEc-ccCCCCHHHHHhhcccccc-------------CceEEEEECCe
Q psy12008 201 EKINVTYKGLPEDAELIM-NKNLSTPYNCAQHMSEMLC-------------DRSVLALIDGV 248 (458)
Q Consensus 201 ~~i~v~~~~~~~g~~~~~-~~g~tT~~~iak~i~~~l~-------------~~~v~a~vng~ 248 (458)
.++.|++ ||+.+++ ..|. |+++.|++..+..+ =+..++.|+|.
T Consensus 67 ~~~~I~I----DGk~VeV~~~G~-TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~ 123 (297)
T PTZ00305 67 PRAIMFV----NKRPVEIIPQEE-NLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGT 123 (297)
T ss_pred CceEEEE----CCEEEEecCCCC-hHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECCC
Confidence 5566776 8999998 8895 99999998665332 14577778876
No 84
>PF14607 GxDLY: N-terminus of Esterase_SGNH_hydro-type
Probab=25.62 E-value=69 Score=28.65 Aligned_cols=35 Identities=29% Similarity=0.281 Sum_probs=30.1
Q ss_pred ecCcCccCccccccccccceeeEeecC-CceEEEeeccCcccc
Q psy12008 102 SRGPMMSNTNHLGRCTIAAAQQVETDA-GLFYRFQGVALPKSI 143 (458)
Q Consensus 102 c~Gphv~~Tg~i~~~~i~~~f~l~~~~-g~~~Ri~g~s~p~~~ 143 (458)
...||+|.||.-| ++|-... ++-||+-|++-|+..
T Consensus 71 ~~m~hM~~tg~~G-------lDLY~~~~~G~W~~~~~g~p~~~ 106 (147)
T PF14607_consen 71 LSMPHMPATGVSG-------LDLYAKDDDGKWRFAGVGRPKFG 106 (147)
T ss_pred CCCCCCchhhcCc-------eEEEEEcCCCCEEEEEecccCCC
Confidence 6789999999998 8887664 889999998888776
No 85
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=24.51 E-value=3.8e+02 Score=24.29 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=33.8
Q ss_pred HHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCHHHHH-HHHHHHHHHH
Q psy12008 280 FWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELR-VLSAEMVKLA 347 (458)
Q Consensus 280 y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~edl~-~Ie~~m~~iI 347 (458)
--||+.||++.-+++-.....++- -. ||.=-.-|||.-+. + .++.+++. .+++.++.+.
T Consensus 52 alHTlEHL~At~lRn~~~~~~~iI-~~--sPMGCrTGFYli~~-g-----~~~~~~i~~l~~~~l~~i~ 111 (158)
T PRK02260 52 GIHTLEHLLAGFLRNHLDGGVEII-DI--SPMGCRTGFYLILI-G-----TPDEEDVADALKATLEDVL 111 (158)
T ss_pred chhHHHHHHHHHHhhCccCCceEE-EE--CCCccccccEEEEe-C-----CCCHHHHHHHHHHHHHHHH
Confidence 389999999999998554312331 11 33211237988553 3 35555554 5555555554
No 86
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=24.03 E-value=1.5e+02 Score=23.55 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=35.2
Q ss_pred ccCCCCHHHHHhhccccccCceEEEEECCeEEeeccccccccccccee
Q psy12008 219 NKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLL 266 (458)
Q Consensus 219 ~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l 266 (458)
..+ +|..++...+..-+. .+-++.|||. ..++++.+.++..|.+.
T Consensus 30 ~~~-~tvkd~IEsLGVP~t-EV~~i~vNG~-~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 30 DGG-ATVKDVIESLGVPHT-EVGLILVNGR-PVDFDYRLKDGDRVAVY 74 (81)
T ss_pred CCC-CcHHHHHHHcCCChH-HeEEEEECCE-ECCCcccCCCCCEEEEE
Confidence 444 599999998876543 4677889999 99999999887777654
No 87
>PTZ00301 uridine kinase; Provisional
Probab=20.76 E-value=43 Score=31.68 Aligned_cols=60 Identities=10% Similarity=0.006 Sum_probs=33.1
Q ss_pred EEeeCCCCcEEEcccCCCCHHH-HHhhcccccc-CceEEEEECCeEEeec-ccccccccccceecccCCCC
Q psy12008 206 TYKGLPEDAELIMNKNLSTPYN-CAQHMSEMLC-DRSVLALIDGVKLWDM-HRPLESDCELQLLHFYDSDP 273 (458)
Q Consensus 206 ~~~~~~~g~~~~~~~g~tT~~~-iak~i~~~l~-~~~v~a~vng~~~~dL-~~pl~~d~~ve~l~~~~~~g 273 (458)
.+++++||+ .+||||+.+ +++++....+ ..+++...|++ +.+. ..|..+. ...+|++++.
T Consensus 4 ~iIgIaG~S----gSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y-y~~~~~~~~~~~---~~~~~d~p~a 66 (210)
T PTZ00301 4 TVIGISGAS----GSGKSSLSTNIVSELMAHCGPVSIGVICEDFY-YRDQSNIPESER---AYTNYDHPKS 66 (210)
T ss_pred EEEEEECCC----cCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC-ccCcccCCHHHh---cCCCCCChhh
Confidence 456778888 899988732 2233322222 23446667898 6654 3333222 2346776654
No 88
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=20.60 E-value=1.4e+02 Score=22.36 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=27.6
Q ss_pred eEEEEeeCCCCcEEE--cccCCCCHHHHHhhccccc--cC-ceEEEEECCeEEeec
Q psy12008 203 INVTYKGLPEDAELI--MNKNLSTPYNCAQHMSEML--CD-RSVLALIDGVKLWDM 253 (458)
Q Consensus 203 i~v~~~~~~~g~~~~--~~~g~tT~~~iak~i~~~l--~~-~~v~a~vng~~~~dL 253 (458)
|+|++.+. +|+.+. +... +++..+...+.... +. ..+.-..||+ ..+.
T Consensus 1 I~i~v~~~-~~~~~~~~v~~~-~~~~~l~~~~~~~~~i~~~~~~~l~fdG~-~L~~ 53 (72)
T PF11976_consen 1 ITIKVRSQ-DGKEIKFKVKPT-TTVSKLIEKYCEKKGIPPEESIRLIFDGK-RLDP 53 (72)
T ss_dssp EEEEEEET-TSEEEEEEEETT-SCCHHHHHHHHHHHTTTT-TTEEEEETTE-EE-T
T ss_pred CEEEEEeC-CCCEEEEEECCC-CcHHHHHHHHHHhhCCCccceEEEEECCE-EcCC
Confidence 34555444 555443 3443 47788887776544 33 4577788998 4443
Done!