Query psy12008
Match_columns 458
No_of_seqs 360 out of 3150
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 16:19:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tke_A Threonyl-tRNA synthetas 100.0 3.1E-46 1E-50 356.3 17.1 205 210-432 6-213 (224)
2 1qf6_A THRRS, threonyl-tRNA sy 100.0 2E-41 6.9E-46 367.9 17.2 204 210-431 6-212 (642)
3 1nyr_A Threonyl-tRNA synthetas 100.0 1.3E-40 4.5E-45 362.6 13.6 204 210-431 8-211 (645)
4 1qf6_A THRRS, threonyl-tRNA sy 100.0 1.6E-30 5.3E-35 282.5 14.9 178 2-197 86-285 (642)
5 1nyr_A Threonyl-tRNA synthetas 100.0 2.4E-30 8.2E-35 281.8 11.2 178 2-197 88-285 (645)
6 1tke_A Threonyl-tRNA synthetas 100.0 7.2E-29 2.5E-33 236.2 11.7 126 2-140 86-224 (224)
7 1v4p_A Alanyl-tRNA synthetase; 100.0 7.9E-28 2.7E-32 216.6 15.1 132 277-421 4-136 (157)
8 3kew_A DHHA1 domain protein; s 99.9 7.3E-22 2.5E-26 189.4 10.1 150 245-422 64-216 (241)
9 2ztg_A Alanyl-tRNA synthetase; 99.8 3.6E-20 1.2E-24 200.4 16.3 128 278-422 596-724 (739)
10 1v4p_A Alanyl-tRNA synthetase; 99.8 2E-20 6.9E-25 168.1 11.8 104 9-127 30-135 (157)
11 2zze_A Alanyl-tRNA synthetase; 99.8 1.6E-19 5.5E-24 195.4 13.6 137 266-422 601-738 (752)
12 2e1b_A PH0108, 216AA long hypo 99.8 2.5E-19 8.4E-24 169.2 9.9 125 256-422 76-203 (216)
13 2ztg_A Alanyl-tRNA synthetase; 99.6 1.6E-15 5.3E-20 164.3 14.3 109 13-139 625-737 (739)
14 3kew_A DHHA1 domain protein; s 99.6 2.3E-16 7.8E-21 151.1 6.7 117 3-143 112-232 (241)
15 2zze_A Alanyl-tRNA synthetase; 99.6 6.3E-15 2.2E-19 159.6 12.7 120 3-139 627-751 (752)
16 2e1b_A PH0108, 216AA long hypo 99.5 3.6E-14 1.2E-18 133.8 8.4 91 7-136 119-213 (216)
17 1wwt_A Threonyl-tRNA synthetas 99.4 1.5E-13 5.1E-18 111.1 3.4 71 210-285 16-87 (88)
18 2kmm_A Guanosine-3',5'-BIS(dip 98.7 2.8E-08 9.6E-13 76.8 6.3 62 210-273 7-68 (73)
19 3hvz_A Uncharacterized protein 98.4 3.2E-07 1.1E-11 71.9 6.5 61 210-272 12-72 (78)
20 1tyg_B YJBS; alpha beta barrel 92.9 0.16 5.6E-06 40.1 5.5 59 202-268 20-83 (87)
21 2l32_A Small archaeal modifier 92.6 0.11 3.7E-06 39.8 4.0 63 202-270 2-64 (74)
22 1f0z_A THis protein; ubiquitin 92.4 0.22 7.5E-06 36.9 5.4 53 212-268 6-62 (66)
23 1ryj_A Unknown; beta/alpha pro 91.7 0.42 1.4E-05 35.9 6.3 62 203-268 5-66 (70)
24 2cu3_A Unknown function protei 90.7 0.52 1.8E-05 34.6 5.8 52 212-268 5-60 (64)
25 2k5p_A THis protein, thiamine- 90.6 0.29 1E-05 37.7 4.5 55 212-269 6-66 (78)
26 2kl0_A Putative thiamin biosyn 90.4 0.33 1.1E-05 36.9 4.6 53 212-269 6-62 (73)
27 1rws_A Hypothetical protein PF 86.2 0.62 2.1E-05 35.6 3.7 53 212-268 21-73 (77)
28 1vjk_A Molybdopterin convertin 85.5 0.91 3.1E-05 36.2 4.6 51 215-267 30-93 (98)
29 2eki_A DRG 1, developmentally- 84.4 3.6 0.00012 32.7 7.4 52 216-269 29-88 (93)
30 3rpf_C Molybdopterin convertin 72.1 6.8 0.00023 29.2 5.4 62 202-267 2-69 (74)
31 2q5w_D Molybdopterin convertin 70.0 2.6 9E-05 31.6 2.6 48 219-268 23-73 (77)
32 3po0_A Small archaeal modifier 67.7 5 0.00017 31.0 3.9 49 217-267 23-84 (89)
33 2hj1_A Hypothetical protein; s 65.9 3.2 0.00011 33.3 2.4 57 216-274 30-91 (97)
34 1fm0_D Molybdopterin convertin 62.1 11 0.00036 28.4 4.7 44 223-267 26-76 (81)
35 2g1e_A Hypothetical protein TA 61.1 7.3 0.00025 29.9 3.7 52 215-268 18-86 (90)
36 3dwg_C 9.5 kDa culture filtrat 46.8 26 0.00088 27.1 4.8 50 215-267 20-88 (93)
37 2l52_A Methanosarcina acetivor 30.3 32 0.0011 27.0 2.9 51 215-268 22-95 (99)
38 1v8c_A MOAD related protein; r 28.9 48 0.0017 28.9 4.0 72 223-297 23-110 (168)
39 1wxq_A GTP-binding protein; st 25.9 23 0.00078 35.4 1.5 52 214-267 341-394 (397)
No 1
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=100.00 E-value=3.1e-46 Score=356.29 Aligned_cols=205 Identities=20% Similarity=0.349 Sum_probs=189.7
Q ss_pred CCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceecccCCCCcchhhHHHhhHHHHHH
Q psy12008 210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLG 289 (458)
Q Consensus 210 ~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~~~~~~g~~~~~~y~hS~~~lL~ 289 (458)
.++|+.++++.| +|+.|+|+.++..+++.+++|+|||+ ++||++|+..+|.|++|++++++| +++||||++|||+
T Consensus 6 ~p~G~~~~~~~g-~T~~dia~~i~~~l~~~~vaakvNg~-l~dL~~~l~~~~~ve~it~~~~~g---~~~~~HS~~HlL~ 80 (224)
T 1tke_A 6 LPDGSQRHYDHA-VSPMDVALDIGPGLAKACIAGRVNGE-LVDACDLIENDAQLSIITAKDEEG---LEIIRHSCAHLLG 80 (224)
T ss_dssp CTTSCEEECSSC-BCHHHHHHHHCHHHHHHCCEEEETTE-EEETTCCBCSCEEEEEECTTSHHH---HHHHHHHHHHHHH
T ss_pred eCCCCEEEecCC-CCHHHHHHHHhhhcccceEEEEECCE-EeccceEcCCCCeEEEEecCchhH---HHHHHHHHHHHHH
Confidence 468999999999 49999999999888899999999999 999999999999999999999999 8999999999999
Q ss_pred HHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhh
Q psy12008 290 SVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH 369 (458)
Q Consensus 290 ~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~edl~~Ie~~m~~iI~~~~pi~~~~vs~eeA~~~F~~ 369 (458)
+|++++||+ .++. .|+++++ ||||||+.+ .++|++|+++||++|+++|++|+||++.+++++||+++|+.
T Consensus 81 ~A~~~~~~~-~~~~----~g~~~~~-g~y~d~~~~----~~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~ 150 (224)
T 1tke_A 81 HAIKQLWPH-TKMA----IGPVIDN-GFYYDVDLD----RTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFAN 150 (224)
T ss_dssp HHHHHHSTT-CEEC----CCCEETT-EEEEEEECS----SCCCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHH
T ss_pred HHHHHHCCC-cEEE----ECCccCC-eEEEEEeCC----CCCCHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHH
Confidence 999999997 5653 4777775 899999976 68999999999999999999999999999999999999987
Q ss_pred --Cccccccccc-ccccCCCCeEEEEEECCeEeeeCCCCccCcCccCcEEEEeecceEEeeCCCcc
Q psy12008 370 --NKYKLEQIPS-IVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVSFRFFLSPPSCL 432 (458)
Q Consensus 370 --~~~K~~ll~~-~~~~~~~~~v~iy~~g~~~D~c~Gphv~~Tg~I~~f~l~~~~~g~~l~~p~~~ 432 (458)
+++|++|++. ++. ++.|++|+||+|+|+|+||||||||+||.|+|+++++|||+++.+.+
T Consensus 151 ~~~~~k~~l~~~~~~~---~~~v~vy~~g~~~dlC~G~Hv~~Tg~i~~fkl~~~~~~yw~g~~~~~ 213 (224)
T 1tke_A 151 RGESYKVSILDENIAH---DDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNK 213 (224)
T ss_dssp TTCHHHHHHHHHHSCT---TCCCEEEEETTEEEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSC
T ss_pred cCCchHHHHhccccCC---CCeeEEEEeCCEEEECCCcCCCcCcccceEEEEEecceeEcCCCCCc
Confidence 7899999986 653 67899999999999999999999999999999999999999997654
No 2
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=2e-41 Score=367.94 Aligned_cols=204 Identities=20% Similarity=0.357 Sum_probs=190.2
Q ss_pred CCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceecccCCCCcchhhHHHhhHHHHHH
Q psy12008 210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLG 289 (458)
Q Consensus 210 ~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~~~~~~g~~~~~~y~hS~~~lL~ 289 (458)
++||++++++.|+ |+.+||+.++..+++.+++|+|||+ +|||++|++.||+|++|+|++++| ++++|||++|||+
T Consensus 6 ~~d~~~~~~~~~~-t~~~~a~~i~~~~~~~~~~~~vng~-~~dl~~~l~~d~~~~~~~~~~~~~---~~~~~HSa~HlL~ 80 (642)
T 1qf6_A 6 LPDGSQRHYDHAV-SPMDVALDIGPGLAKACIAGRVNGE-LVDACDLIENDAQLSIITAKDEEG---LEIIRHSCAHLLG 80 (642)
T ss_dssp CTTSCEEECSSCB-CHHHHHHHHCHHHHHHCSEEEETTE-EEETTSCBCSCEECCEECTTSHHH---HHHHHHHHHHHHH
T ss_pred cCCCCeEEecCCC-CHHHHHHHhchhhhhheEEEEECCE-EeccccccCCCceEEEeecCcHHH---HHHHHHHHHHHHH
Confidence 5799999999995 9999999999999999999999999 999999999999999999999999 8999999999999
Q ss_pred HHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhh
Q psy12008 290 SVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH 369 (458)
Q Consensus 290 ~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~edl~~Ie~~m~~iI~~~~pi~~~~vs~eeA~~~F~~ 369 (458)
+|++++||+ +++ +.||++++ ||||||+.+ .++|++|+.+||++|+++|++|+||++.+++++||+++|+.
T Consensus 81 ~Al~~~~~~-~~~----~~G~~i~~-gfy~Df~~~----~~~t~edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~ 150 (642)
T 1qf6_A 81 HAIKQLWPH-TKM----AIGPVIDN-GFYYDVDLD----RTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFAN 150 (642)
T ss_dssp HHHHHHCTT-CEE----CCCCEETT-EEEEEEECS----SCCCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHH
T ss_pred HHHHHhCCC-cEE----EECCccCC-eeEEEEeCC----CCCCHHHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhh
Confidence 999999997 565 35888885 899999976 68999999999999999999999999999999999999997
Q ss_pred --Cccccccc-ccccccCCCCeEEEEEECCeEeeeCCCCccCcCccCcEEEEeecceEEeeCCCc
Q psy12008 370 --NKYKLEQI-PSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVSFRFFLSPPSC 431 (458)
Q Consensus 370 --~~~K~~ll-~~~~~~~~~~~v~iy~~g~~~D~c~Gphv~~Tg~I~~f~l~~~~~g~~l~~p~~ 431 (458)
++||++++ +.++. ++.|++|+||+|+|+|+||||||||+||.|+|++++++||++..+.
T Consensus 151 ~~e~yk~~li~~~~~~---~~~v~vy~~g~~~dlC~GpHv~~Tg~I~~fkl~~~~~~yw~g~~~~ 212 (642)
T 1qf6_A 151 RGESYKVSILDENIAH---DDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNN 212 (642)
T ss_dssp HTCHHHHHHHHHHSCT---TCCCEEEEETTEEECCSSCCCSBGGGCCSEEEEEEEEEEGGGCTTS
T ss_pred hCCcchhhhhhcccCC---CCceEEEEECCEEEecCCCccCCCCcceeEEEeeeccccccCccCC
Confidence 88999999 76663 4689999999999999999999999999999999999999998654
No 3
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=100.00 E-value=1.3e-40 Score=362.60 Aligned_cols=204 Identities=22% Similarity=0.396 Sum_probs=189.4
Q ss_pred CCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceecccCCCCcchhhHHHhhHHHHHH
Q psy12008 210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLG 289 (458)
Q Consensus 210 ~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~~~~~~g~~~~~~y~hS~~~lL~ 289 (458)
++||++++++.|+ |+.+||+.++..+++.+++|+|||+ +|||++|++.||+|+||++++++| +++||||++|||+
T Consensus 8 ~~dg~~~~~~~g~-t~~~ia~~~~~~~~~~~v~~~vng~-~~dl~~~l~~d~~v~~~~~~~~~g---~~~~~HSa~HlL~ 82 (645)
T 1nyr_A 8 FPDGNKKAFDKGT-TTEDIAQSISPGLRKKAVAGKFNGQ-LVDLTKPLETDGSIEIVTPGSEEA---LEVLRHSTAHLMA 82 (645)
T ss_dssp CTTSCCCBCCTTC-CHHHHHHTTCHHHHHHCCEEEETTE-EECTTSCCCSCBCCCEECTTSHHH---HHHHHHHHHHHHH
T ss_pred eCCCCEEEecCCC-CHHHHHHHhhhhcccCeEEEEECCE-EEeCCcccCCCCeEEEeeccchhH---HHHHHHHHHHHHH
Confidence 5789999999995 9999999999999999999999999 999999999999999999999999 8999999999999
Q ss_pred HHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhh
Q psy12008 290 SVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH 369 (458)
Q Consensus 290 ~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~edl~~Ie~~m~~iI~~~~pi~~~~vs~eeA~~~F~~ 369 (458)
+|++++||+ .+++ .|+++.+ ||||||+.+ .++|++|+.+||++|+++|++|+||++.+++++||+++|++
T Consensus 83 ~A~~~~~~~-~~~~----~g~~~~~-g~~~Df~~~----~~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~ 152 (645)
T 1nyr_A 83 HAIKRLYGN-VKFG----VGPVIEG-GFYYDFDID----QNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSN 152 (645)
T ss_dssp HHHHHHSSS-CEEC----CCCEETT-EEEEEEECS----SCCCSTTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSS
T ss_pred HHHHHHcCC-cEEE----ECCccCC-ceEEEecCC----CCCCHHHHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhh
Confidence 999999997 5553 5888865 899999876 68999999999999999999999999999999999999998
Q ss_pred CcccccccccccccCCCCeEEEEEECCeEeeeCCCCccCcCccCcEEEEeecceEEeeCCCc
Q psy12008 370 NKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVSFRFFLSPPSC 431 (458)
Q Consensus 370 ~~~K~~ll~~~~~~~~~~~v~iy~~g~~~D~c~Gphv~~Tg~I~~f~l~~~~~g~~l~~p~~ 431 (458)
++||++|++.++. ++.|++|+||+|+|+|+||||||||+||.|+|+++++|||++....
T Consensus 153 ~~yk~~li~~~~~---~~~vrv~~~g~~~dlC~G~Hv~~Tg~i~~fkl~~~~~a~~~~~~~~ 211 (645)
T 1nyr_A 153 DEYKLELIDAIPE---DENVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNN 211 (645)
T ss_dssp CHHHHHHHCCCSS---SCCCEEEEETTEEEECCSCCCSCGGGCCEEEEEEEEEEETTSCSSS
T ss_pred CcchHHHhhcCCC---CCeeEEEEECCEEEecCCcccCCCCCCceEEEeeeCchHHHHHhHH
Confidence 8999999987763 4589999999999999999999999999999999999999998543
No 4
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.97 E-value=1.6e-30 Score=282.48 Aligned_cols=178 Identities=20% Similarity=0.243 Sum_probs=156.5
Q ss_pred CcCCCcccCCCccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhh--cccccccc-
Q psy12008 2 IFKNDVRGKVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH--NKYKLEQI- 78 (458)
Q Consensus 2 ~~~~~~~~~~~~~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~--~~~K~~li- 78 (458)
+||++....+|.+++||||||+++. ++|++|+++||++|+++|++|+||++..++++||+++|+. ++||++|+
T Consensus 86 ~~~~~~~~~G~~i~~gfy~Df~~~~----~~t~edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~ 161 (642)
T 1qf6_A 86 LWPHTKMAIGPVIDNGFYYDVDLDR----TLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILD 161 (642)
T ss_dssp HCTTCEECCCCEETTEEEEEEECSS----CCCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHH
T ss_pred hCCCcEEEECCccCCeeEEEEeCCC----CCCHHHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchhhhhh
Confidence 4788777778888999999999764 8999999999999999999999999999999999999997 89999999
Q ss_pred ccccccCCCCeEEEEEECCeEeeecCcCccCccccccccccceeeEeecCCceE----------EEeeccCcccccchhH
Q psy12008 79 PSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFY----------RFQGVALPKSIKGFIP 148 (458)
Q Consensus 79 ~~~~~~~~~~~v~vy~~g~~~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~~g~~~----------Ri~g~s~p~~~~~~~~ 148 (458)
+.++ +++.|++|+||+|+|+|+||||||||+|+ .|+|.+++|+|| |++|++||++. +|+
T Consensus 162 ~~~~---~~~~v~vy~~g~~~dlC~GpHv~~Tg~I~------~fkl~~~~~~yw~g~~~~~~l~r~~g~~~~~~~--~l~ 230 (642)
T 1qf6_A 162 ENIA---HDDKPGLYFHEEYVDMCRGPHVPNMRFCH------HFKLMKTAGAYWRGDSNNKMLQRIYGTAWADKK--ALN 230 (642)
T ss_dssp HHSC---TTCCCEEEEETTEEECCSSCCCSBGGGCC------SEEEEEEEEEEGGGCTTSCEEEEEEEEECSSHH--HHH
T ss_pred cccC---CCCceEEEEECCEEEecCCCccCCCCcce------eEEEeeeccccccCccCCceeEeeeccccCchh--HHh
Confidence 7765 34689999999999999999999999999 788777766666 79999999999 999
Q ss_pred HHHHhccchhhhcchhhhhhhh------hcC---CCHHHHHHHHHHHHHHHHHHHHHh
Q psy12008 149 SWMNMGLSSIEAGKSDIFLVIR------LGQ---ISSNIVQKQNDIFNKEFKRQQNAV 197 (458)
Q Consensus 149 ~~~~~~~~~ee~~~rdh~~i~~------~~~---l~~~~~~~~~~l~e~l~~~q~~~i 197 (458)
+|++++ |||++||||+++. +.+ +...|.+....+.+++.+.-++..
T Consensus 231 ~~~~~~---eea~~rdH~~lg~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~r~~~ 285 (642)
T 1qf6_A 231 AYLQRL---EEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKL 285 (642)
T ss_dssp HHHHHH---HHHHTTCHHHHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhh---hccccCCHHHHHHhcCccccccCCCCcEEECCcHHHHHHHHHHHHHHHH
Confidence 999999 9999999999977 222 233578999999999888766654
No 5
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.96 E-value=2.4e-30 Score=281.75 Aligned_cols=178 Identities=22% Similarity=0.285 Sum_probs=156.0
Q ss_pred CcCCCcccCCCccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhhccccccccccc
Q psy12008 2 IFKNDVRGKVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSI 81 (458)
Q Consensus 2 ~~~~~~~~~~~~~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~~~~K~~li~~~ 81 (458)
+||+.+...+|.+++||||||.++. ++|++|+.+||++|+++|++|+||++..++++||+++|++++||.+|++.+
T Consensus 88 ~~~~~~~~~g~~~~~g~~~Df~~~~----~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~~ 163 (645)
T 1nyr_A 88 LYGNVKFGVGPVIEGGFYYDFDIDQ----NISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAI 163 (645)
T ss_dssp HSSSCEECCCCEETTEEEEEEECSS----CCCSTTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCCC
T ss_pred HcCCcEEEECCccCCceEEEecCCC----CCCHHHHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchHHHhhcC
Confidence 5888888888889999999998764 899999999999999999999999999999999999999899999999987
Q ss_pred cccCCCCeEEEEEECCeEeeecCcCccCccccccccccceeeEeecCCce----------EEEeeccCcccccchhHHHH
Q psy12008 82 VQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLF----------YRFQGVALPKSIKGFIPSWM 151 (458)
Q Consensus 82 ~~~~~~~~v~vy~~g~~~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~~g~~----------~Ri~g~s~p~~~~~~~~~~~ 151 (458)
+ .++.|++|+||+|+|+|+||||||||+|+ .|+|.+++|+| .|++|++||++. ++.+|+
T Consensus 164 ~---~~~~vrv~~~g~~~dlC~G~Hv~~Tg~i~------~fkl~~~~~a~~~~~~~~~~l~ri~g~~~~~~~--~l~~~~ 232 (645)
T 1nyr_A 164 P---EDENVTLYSQGDFTDLCRGVHVPSTAKIK------EFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKK--ELKAHL 232 (645)
T ss_dssp S---SSCCCEEEEETTEEEECCSCCCSCGGGCC------EEEEEEEEEEETTSCSSSCEEEEEEEEEESSHH--HHHHHH
T ss_pred C---CCCeeEEEEECCEEEecCCcccCCCCCCc------eEEEeeeCchHHHHHhHHHHHHHHHHHhcCCHH--Hhhhhh
Confidence 6 34589999999999999999999999999 77777665444 489999999999 999999
Q ss_pred Hhccchhhhcchhhhhhhh------hcC----CCHHHHHHHHHHHHHHHHHHHHHh
Q psy12008 152 NMGLSSIEAGKSDIFLVIR------LGQ----ISSNIVQKQNDIFNKEFKRQQNAV 197 (458)
Q Consensus 152 ~~~~~~ee~~~rdh~~i~~------~~~----l~~~~~~~~~~l~e~l~~~q~~~i 197 (458)
+.+ |||++||||+++. +.+ +...|.+....+.+++.+.-++..
T Consensus 233 ~~l---~ea~~rdhr~lg~~l~l~~~~~~~~~G~~~~lP~g~~~~~~l~~~ir~~~ 285 (645)
T 1nyr_A 233 QML---EERKERDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKE 285 (645)
T ss_dssp HHH---HHHHHTCHHHHHHHTTCEEEETTTEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred hhh---hhhhhhhHHHHhhhcceEEecccCCCceeEECCCHHHHHHHHHHHHHHHH
Confidence 999 9999999999975 222 223578888888888877766654
No 6
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.95 E-value=7.2e-29 Score=236.22 Aligned_cols=126 Identities=23% Similarity=0.351 Sum_probs=112.6
Q ss_pred CcCCCcccCCCccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhh--ccccccccc
Q psy12008 2 IFKNDVRGKVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH--NKYKLEQIP 79 (458)
Q Consensus 2 ~~~~~~~~~~~~~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~--~~~K~~li~ 79 (458)
+||++....+|.+++||||||.++. ++|++|+++||++|+++|++|+||++..++++||+++|+. ++||++|++
T Consensus 86 ~~~~~~~~~g~~~~~g~y~d~~~~~----~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~ 161 (224)
T 1tke_A 86 LWPHTKMAIGPVIDNGFYYDVDLDR----TLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILD 161 (224)
T ss_dssp HSTTCEECCCCEETTEEEEEEECSS----CCCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HCCCcEEEECCccCCeEEEEEeCCC----CCCHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhc
Confidence 4787655557888999999999764 8999999999999999999999999999999999999987 899999998
Q ss_pred c-ccccCCCCeEEEEEECCeEeeecCcCccCccccccccccceeeEeecCCceE----------EEeeccCc
Q psy12008 80 S-IVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFY----------RFQGVALP 140 (458)
Q Consensus 80 ~-~~~~~~~~~v~vy~~g~~~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~~g~~~----------Ri~g~s~p 140 (458)
. ++ .++.|++|+||+|+|+|+||||||||+|+ .|+|.+++|+|| ||||+|||
T Consensus 162 ~~~~---~~~~v~vy~~g~~~dlC~G~Hv~~Tg~i~------~fkl~~~~~~yw~g~~~~~~lqRiyg~a~~ 224 (224)
T 1tke_A 162 ENIA---HDDKPGLYFHEEYVDMCRGPHVPNMRFCH------HFKLMKTAGAYWRGDSNNKMLQRIYGTAWA 224 (224)
T ss_dssp HHSC---TTCCCEEEEETTEEEEESCCCCSBGGGCC------CEEEEEEEEEEGGGCTTSCEEEEEEEEECC
T ss_pred cccC---CCCeeEEEEeCCEEEECCCcCCCcCcccc------eEEEEEecceeEcCCCCCceeEEEEEeccC
Confidence 7 64 35789999999999999999999999999 777777766555 89999997
No 7
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.95 E-value=7.9e-28 Score=216.64 Aligned_cols=132 Identities=18% Similarity=0.206 Sum_probs=111.6
Q ss_pred hhHHHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy12008 277 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL 356 (458)
Q Consensus 277 ~~~y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~edl~~Ie~~m~~iI~~~~pi~~~ 356 (458)
++++|||++|||++|++++||.+++++. |++++++|+||||+++ .++|++++.+||++|+++|++|+||++.
T Consensus 4 ~~~~~HSa~HlL~~Al~~~~~~~~~~~~----~~~i~~~~~~~~~d~~----~~~t~e~l~~IE~~~n~~I~~~~pi~~~ 75 (157)
T 1v4p_A 4 IEVRTHSALHVVKGAVVKVLGSEAKWTY----STYVKGNKGVLIVKFD----RKPSDEEIREIERLANEKVKENAPIKIY 75 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCEE----EEEEETTEEEEEEECS----SCCCHHHHHHHHHHHHHHHHHTCBCEEE
T ss_pred hHHHhHHHHHHHHHHHHHHhCCCcEEec----CceecCCCcEEEEEeC----CCCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 7899999999999999999983344433 4456655899999976 6899999999999999999999999999
Q ss_pred EeCHHHHHHHhhhCcccccccccccccCCCCeEEEEEECCe-EeeeCCCCccCcCccCcEEEEeec
Q psy12008 357 SISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDH-IDISRGPMMSNTNHLGRCTIAAVS 421 (458)
Q Consensus 357 ~vs~eeA~~~F~~~~~K~~ll~~~~~~~~~~~v~iy~~g~~-~D~c~Gphv~~Tg~I~~f~l~~~~ 421 (458)
+++++||+++|+.+.++.+. .+. +.+.|++|+||+| +|+|+||||+|||+||.|+|+.+.
T Consensus 76 ~~~~~eA~~~f~~~~~~~~~---~~~--~~~~vrv~~ig~~~~~~C~GtHv~~Tg~I~~fki~~~~ 136 (157)
T 1v4p_A 76 ELPREEAEKMFGEDMYDLFP---VPE--DVRILKVVVIEDWNVNACNKEHTKTTGEIGPIKIRKVR 136 (157)
T ss_dssp EEEHHHHHHHHGGGGSCSSC---CCT--TCCEEEEEEETTTEEEECCSCCCSBGGGTCCEEEEEEE
T ss_pred EeCHHHHHHhhCcccccccc---CCC--CCCeEEEEEECCeeEeCCCCCccCChhhcceEEEEEEE
Confidence 99999999999876554332 221 1268999999999 999999999999999999999653
No 8
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=99.86 E-value=7.3e-22 Score=189.36 Aligned_cols=150 Identities=14% Similarity=0.137 Sum_probs=120.3
Q ss_pred ECCeEEee-cccccccccccc-eecccCCCCcchhhHHHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccCCcEEEEEe
Q psy12008 245 IDGVKLWD-MHRPLESDCELQ-LLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQ 322 (458)
Q Consensus 245 vng~~~~d-L~~pl~~d~~ve-~l~~~~~~g~~~~~~y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~ 322 (458)
.+|. ++- +..++..+..|+ .|||+.+. .-+.|||++|||++|++++||.. .. |+.+..++||+||.
T Consensus 64 ~~g~-i~H~~~~~l~~g~~V~~~vD~~rR~----~~~~~HTa~HLL~~al~~~~g~~-~~------G~~v~~~~~r~Df~ 131 (241)
T 3kew_A 64 EEGK-VYHVLEKEPKKLKNLQCELDWERRF----DGMQQHLGQHLLSGCFYDLFGAN-TC------GFHLGKEISTVDIV 131 (241)
T ss_dssp ETTE-EEEEESSCCCCCSSEEEEECHHHHH----HHHHHHHHHHHHHHHHHHHHCCC-EE------EEEECSSCEEEEEE
T ss_pred eCCE-EEEEECCcCCCCCEEEEEECHHHhh----hHHHHHHHHHHHHHHHHHHCCCC-eE------eccccCCeEEEEEC
Confidence 3666 554 345666666777 47776554 35789999999999999999973 32 55565558999998
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhhCcccccccccccccCCCCeEEEEEECCe-Eeee
Q psy12008 323 LSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDH-IDIS 401 (458)
Q Consensus 323 ~~~~~~~~lt~edl~~Ie~~m~~iI~~~~pi~~~~vs~eeA~~~F~~~~~K~~ll~~~~~~~~~~~v~iy~~g~~-~D~c 401 (458)
. ++|++++.+||++||++|++|+||++.+++++||++++. + .+.+ . .++.|++|+||+| +++|
T Consensus 132 -~-----~lt~e~l~~IE~~vn~~I~~~~pV~~~~~~~~eA~~~~~----~-~~~e-~----~~~~VRvv~ig~~~~~~C 195 (241)
T 3kew_A 132 -G-----FLDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKT----R-RALP-K----TDEEIRIVEIVGLDLNAC 195 (241)
T ss_dssp -S-----CCCHHHHHHHHHHHHHHHHHTCBEEEECCCTTTTTTCCC----S-SCCC-C----CSSCCCEEEETTTEEEEC
T ss_pred -C-----CCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhcCh----h-hcCC-c----cCCcEEEEEECCeEEEcC
Confidence 5 699999999999999999999999999999999998742 1 1111 1 1578999999998 8999
Q ss_pred CCCCccCcCccCcEEEEeecc
Q psy12008 402 RGPMMSNTNHLGRCTIAAVSF 422 (458)
Q Consensus 402 ~Gphv~~Tg~I~~f~l~~~~~ 422 (458)
+||||+|||+|+.|+|++.++
T Consensus 196 gGtHV~~TgeIg~fkI~~~~~ 216 (241)
T 3kew_A 196 CGVHPRNTRDLQVIKIRRWEK 216 (241)
T ss_dssp CSCCCSBSGGGCCEEEEEEEE
T ss_pred CCCCcCCHhhcCCEEEEEEec
Confidence 999999999999999998864
No 9
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=99.83 E-value=3.6e-20 Score=200.42 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=108.7
Q ss_pred hHHHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEE
Q psy12008 278 RTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLS 357 (458)
Q Consensus 278 ~~y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~edl~~Ie~~m~~iI~~~~pi~~~~ 357 (458)
-++|||++|||++|++++||.++... |+.+..+|+||||... .++|++++++||++||++|++|+||++.+
T Consensus 596 ~m~~HTAtHLL~~ALr~vlG~~v~q~-----GS~v~~d~~r~DF~~~----~~lT~edL~~IE~~vNeiI~~nlpV~~~~ 666 (739)
T 2ztg_A 596 HMRHHSATHVLLYSLQKVLGNHVWQA-----GARKEFSKARLDVTHF----RRPSEEEIKEIEMLANREILANKPIKWEW 666 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEE-----ECCSCCSSCEEEEECS----SCCCHHHHHHHHHHHHHHHHTTCBEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEec-----CcEEcCCcEEEEEeCC----CCCCHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 58899999999999999998743321 3334446899999865 68999999999999999999999999999
Q ss_pred eCHHHHHHHhhhCcccccccc-cccccCCCCeEEEEEECCeEeeeCCCCccCcCccCcEEEEeecc
Q psy12008 358 ISQDLAEALFEHNKYKLEQIP-SIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVSF 422 (458)
Q Consensus 358 vs~eeA~~~F~~~~~K~~ll~-~~~~~~~~~~v~iy~~g~~~D~c~Gphv~~Tg~I~~f~l~~~~~ 422 (458)
++++||.++|+ ..+++ ..++ ++.|++|+||+++++|+||||+|||+|+.|+|+++++
T Consensus 667 ~s~eEA~~~~~-----l~L~~~~~~~---~d~VRVV~IGd~~elCGGTHV~nTgeIg~fkIls~s~ 724 (739)
T 2ztg_A 667 MDRIEAERKFG-----FRLYQGGVPP---GRKIRVVQVGDDVQACGGTHCRSTGEIGMLKILKVES 724 (739)
T ss_dssp EEHHHHHHHHC-----GGGGTTCCCC---SSEEEEEEETTEEEECCSCCCSBGGGGCCEEEEEEEE
T ss_pred eCHHHHHHhCC-----HhhhcCCCCC---CCeEEEEEECCeeeCcCCcCcccHhHcCcEEEEEEeE
Confidence 99999999874 45553 2222 6789999999999999999999999999999998853
No 10
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.83 E-value=2e-20 Score=168.12 Aligned_cols=104 Identities=17% Similarity=0.226 Sum_probs=85.5
Q ss_pred cCCCccC-CcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhhccccccccccccccCCC
Q psy12008 9 GKVSLKS-GSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSID 87 (458)
Q Consensus 9 ~~~~~~~-~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~~~~K~~li~~~~~~~~~ 87 (458)
.+++.++ +|+||||+++. ++|++|+.+||++|+++|++|+||++..++++||+++|+.+.++.+.+ +. ..
T Consensus 30 ~~~~~i~~~~~~~~~d~~~----~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~eA~~~f~~~~~~~~~~---~~--~~ 100 (157)
T 1v4p_A 30 TYSTYVKGNKGVLIVKFDR----KPSDEEIREIERLANEKVKENAPIKIYELPREEAEKMFGEDMYDLFPV---PE--DV 100 (157)
T ss_dssp EEEEEEETTEEEEEEECSS----CCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHHHHHHGGGGSCSSCC---CT--TC
T ss_pred ecCceecCCCcEEEEEeCC----CCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhhCccccccccC---CC--CC
Confidence 3344444 58999998754 899999999999999999999999999999999999998765554322 20 12
Q ss_pred CeEEEEEECCe-EeeecCcCccCccccccccccceeeEeec
Q psy12008 88 GKVIVYRIKDH-IDISRGPMMSNTNHLGRCTIAAAQQVETD 127 (458)
Q Consensus 88 ~~v~vy~~g~~-~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~ 127 (458)
+.|++|+||+| +|+|+||||+|||+|+ .|+|.++
T Consensus 101 ~~vrv~~ig~~~~~~C~GtHv~~Tg~I~------~fki~~~ 135 (157)
T 1v4p_A 101 RILKVVVIEDWNVNACNKEHTKTTGEIG------PIKIRKV 135 (157)
T ss_dssp CEEEEEEETTTEEEECCSCCCSBGGGTC------CEEEEEE
T ss_pred CeEEEEEECCeeEeCCCCCccCChhhcc------eEEEEEE
Confidence 68999999999 9999999999999999 5555544
No 11
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=99.80 E-value=1.6e-19 Score=195.36 Aligned_cols=137 Identities=14% Similarity=0.159 Sum_probs=111.4
Q ss_pred ecccCCCCcchhhHHHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q psy12008 266 LHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVK 345 (458)
Q Consensus 266 l~~~~~~g~~~~~~y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~edl~~Ie~~m~~ 345 (458)
||++.+. ..+.|||++|||++|++++||.++. + .|+.+..+++|+||... .++|++++++||++||+
T Consensus 601 VD~~rR~----~~mr~HTAtHLL~~ALr~vlG~~v~-q----~Gs~v~~d~~rfDFs~~----~~lt~edL~~IE~~vNe 667 (752)
T 2zze_A 601 IDWXRRI----QHMRHHTGTHVLMGALVRVLGRHVW-Q----AGSQLTTDWARLDISHY----XRISEEELXEIEMLANR 667 (752)
T ss_dssp ECHHHHH----HHHHHHHHHHHHHHHHHHHHCTTCE-E----EEEEECSSCEEEEEECS----SCCCHHHHHHHHHHHHH
T ss_pred EeHHHHH----HHHHHhHHHHHHHHHHHHHcCCcee-e----ecCcccCCceEEEEeCC----CCCCHHHHHHHHHHHHH
Confidence 5555443 3578999999999999999997432 2 25556556899999876 68999999999999999
Q ss_pred HHHcCCCeEEEEeCHHHHHHHhhhCcccccccccccccCCCCeEEEEEECCe-EeeeCCCCccCcCccCcEEEEeecc
Q psy12008 346 LAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDH-IDISRGPMMSNTNHLGRCTIAAVSF 422 (458)
Q Consensus 346 iI~~~~pi~~~~vs~eeA~~~F~~~~~K~~ll~~~~~~~~~~~v~iy~~g~~-~D~c~Gphv~~Tg~I~~f~l~~~~~ 422 (458)
+|++|+||++.+++++||.+++....++ ...+. ++.|++|++|+| +++|+||||+|||+||.|+|++.++
T Consensus 668 iI~~nlpV~~~~~s~eEA~~~~~~~lf~----~ge~y---gd~VRVV~IGd~svelCGGTHV~nTgeIG~fKIls~s~ 738 (752)
T 2zze_A 668 IVMEDRXVTWEWLPRTTAEQXYGFRLYQ----GGVVP---GREIRVVXIEDWDVQACGGTHLPSTGLVGPIXILRTER 738 (752)
T ss_dssp HHHHTCBEEEEEEEHHHHHHHHCGGGCS----SCCCC---SSEEEEEEETTTEEEECCSCCCSBGGGGCCEEEEEEEE
T ss_pred HHHhCCccceeecCHHHHhhcchhhhhc----CCCCC---CCeEEEEEECCceeCCCCCCccCCHhHccEEEEEEEEE
Confidence 9999999999999999999997642211 01111 578999999998 8999999999999999999998753
No 12
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=99.78 E-value=2.5e-19 Score=169.19 Aligned_cols=125 Identities=10% Similarity=0.042 Sum_probs=101.6
Q ss_pred ccccccccc-eecccCCCCcchhhHHHhhHHHHHHHHHHHHcCCC-cEEEEeecCCCcccCCcEEEEEecCCCCCCCCCH
Q psy12008 256 PLESDCELQ-LLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDN-VEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTS 333 (458)
Q Consensus 256 pl~~d~~ve-~l~~~~~~g~~~~~~y~hS~~~lL~~A~~~~f~~~-~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~ 333 (458)
++..+..|+ -|||+.+. ..+.|||++|||++|++++||.. +.+. |+.+..++||+||..+ .++|+
T Consensus 76 ~l~~g~~v~~~vD~~rR~----~~~~~HTA~HlL~~Al~~~~g~~~~~~~-----g~~v~~~~~r~Df~~~----~~lt~ 142 (216)
T 2e1b_A 76 KFKVGDEVELKIDWDYRY----KLMRIHTGLHLLEHVLNEVLGEGNWQLV-----GSGMSVEKGRYDIAYP----ENLNK 142 (216)
T ss_dssp GCCSSSCEEEEECHHHHH----HHHHHHHHHHHHHHHHHHHHTTTSCEEE-----ECCBCSSEEEEEEECS----SCGGG
T ss_pred CcCCCCEEEEEECHHHHH----HHHHHhHHHHHHHHHHHHHcCCccceee-----eeeEcCCcEEEEEeCC----CCCCH
Confidence 344444555 36776543 45789999999999999999862 2332 5556556899999876 57888
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhhCcccccccccccccCCCCeEEEEEECCe-EeeeCCCCccCcCcc
Q psy12008 334 AELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDH-IDISRGPMMSNTNHL 412 (458)
Q Consensus 334 edl~~Ie~~m~~iI~~~~pi~~~~vs~eeA~~~F~~~~~K~~ll~~~~~~~~~~~v~iy~~g~~-~D~c~Gphv~~Tg~I 412 (458)
+ +++||++||++|++|+||++.++++ +++++||+| .++|+||||+|||+|
T Consensus 143 e-l~~IE~~vn~~I~~~~pv~~~~~~~----------------------------vRvv~ig~~~~~~CgGtHV~~TgeI 193 (216)
T 2e1b_A 143 Y-KEQIISLFNKYVDEGGEVKIWWEGD----------------------------RRYTQIRDFEVIPCGGTHVKDIKEI 193 (216)
T ss_dssp G-HHHHHHHHHHHHHHCCBEEEEESSS----------------------------CEEEEETTSCEECCCSCCCSBGGGT
T ss_pred H-HHHHHHHHHHHHhcCCCEEEEEcCC----------------------------EEEEEECCEEEECCCCCCcccHhhC
Confidence 6 9999999999999999999887764 679999998 899999999999999
Q ss_pred CcEEEEeecc
Q psy12008 413 GRCTIAAVSF 422 (458)
Q Consensus 413 ~~f~l~~~~~ 422 (458)
|.|+|++.++
T Consensus 194 g~fkI~~~~~ 203 (216)
T 2e1b_A 194 GHIKKLKRSS 203 (216)
T ss_dssp CCEEEEEEEE
T ss_pred ceEEEEEEeE
Confidence 9999998753
No 13
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=99.63 E-value=1.6e-15 Score=164.30 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=93.1
Q ss_pred ccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhhccccccccc-cccccCCCCeEE
Q psy12008 13 LKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIP-SIVQQSIDGKVI 91 (458)
Q Consensus 13 ~~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~~~~K~~li~-~~~~~~~~~~v~ 91 (458)
...+||||||.... ++|++++++||++||++|++|+||++..++++||+++| ++.|+. ..+ ..+.|+
T Consensus 625 v~~d~~r~DF~~~~----~lT~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~-----~l~L~~~~~~---~~d~VR 692 (739)
T 2ztg_A 625 KEFSKARLDVTHFR----RPSEEEIKEIEMLANREILANKPIKWEWMDRIEAERKF-----GFRLYQGGVP---PGRKIR 692 (739)
T ss_dssp SCCSSCEEEEECSS----CCCHHHHHHHHHHHHHHHHTTCBEEEEEEEHHHHHHHH-----CGGGGTTCCC---CSSEEE
T ss_pred EcCCcEEEEEeCCC----CCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhC-----CHhhhcCCCC---CCCeEE
Confidence 34789999998654 89999999999999999999999999999999999986 455553 222 257899
Q ss_pred EEEECCeEeeecCcCccCccccccccccceeeEeec---CCceEEEeeccC
Q psy12008 92 VYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETD---AGLFYRFQGVAL 139 (458)
Q Consensus 92 vy~~g~~~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~---~g~~~Ri~g~s~ 139 (458)
||++|+++|+|+||||+|||+|+ .|+|.++ +++..||..++.
T Consensus 693 VV~IGd~~elCGGTHV~nTgeIg------~fkIls~s~i~~GvrRIeavtG 737 (739)
T 2ztg_A 693 VVQVGDDVQACGGTHCRSTGEIG------MLKILKVESIQDGVIRFEFAAG 737 (739)
T ss_dssp EEEETTEEEECCSCCCSBGGGGC------CEEEEEEEEEETTEEEEEEEES
T ss_pred EEEECCeeeCcCCcCcccHhHcC------cEEEEEEeEEcCCEEEEEEEec
Confidence 99999999999999999999999 7777665 567899988764
No 14
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=99.63 E-value=2.3e-16 Score=151.15 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=92.0
Q ss_pred cCCCcccCCCccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhhcccccccccccc
Q psy12008 3 FKNDVRGKVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIV 82 (458)
Q Consensus 3 ~~~~~~~~~~~~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~~~~K~~li~~~~ 82 (458)
|+... .++....++|||||. . ++|++++++||++||++|++|+||++..++++||++++. + .+.+.
T Consensus 112 ~g~~~-~G~~v~~~~~r~Df~-~-----~lt~e~l~~IE~~vn~~I~~~~pV~~~~~~~~eA~~~~~----~-~~~e~-- 177 (241)
T 3kew_A 112 FGANT-CGFHLGKEISTVDIV-G-----FLDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKT----R-RALPK-- 177 (241)
T ss_dssp HCCCE-EEEEECSSCEEEEEE-S-----CCCHHHHHHHHHHHHHHHHHTCBEEEECCCTTTTTTCCC----S-SCCCC--
T ss_pred CCCCe-EeccccCCeEEEEEC-C-----CCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhcCh----h-hcCCc--
Confidence 44442 334444589999998 3 799999999999999999999999999999999998652 1 12211
Q ss_pred ccCCCCeEEEEEECCe-EeeecCcCccCccccccccccceeeEeec---CCceEEEeeccCcccc
Q psy12008 83 QQSIDGKVIVYRIKDH-IDISRGPMMSNTNHLGRCTIAAAQQVETD---AGLFYRFQGVALPKSI 143 (458)
Q Consensus 83 ~~~~~~~v~vy~~g~~-~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~---~g~~~Ri~g~s~p~~~ 143 (458)
..+.|++|++|+| +++|+||||+|||+|+ .|+|.+. +|. .||+.++....+
T Consensus 178 ---~~~~VRvv~ig~~~~~~CgGtHV~~TgeIg------~fkI~~~~~~~~~-~RI~~~~G~~a~ 232 (241)
T 3kew_A 178 ---TDEEIRIVEIVGLDLNACCGVHPRNTRDLQ------VIKIRRWEKHKNA-TRIEYVAGNRAV 232 (241)
T ss_dssp ---CSSCCCEEEETTTEEEECCSCCCSBSGGGC------CEEEEEEEEETTE-EEEEEEEGGGGC
T ss_pred ---cCCcEEEEEECCeEEEcCCCCCcCCHhhcC------CEEEEEEeccCCc-EEEEEEECHHHH
Confidence 1478999999998 8999999999999999 6666543 344 699998876665
No 15
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=99.58 E-value=6.3e-15 Score=159.62 Aligned_cols=120 Identities=14% Similarity=0.113 Sum_probs=95.0
Q ss_pred cCCCcccCCC-ccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhhccccccccccc
Q psy12008 3 FKNDVRGKVS-LKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSI 81 (458)
Q Consensus 3 ~~~~~~~~~~-~~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~~~~K~~li~~~ 81 (458)
|++.+...++ ...++|||||.... ++|++++++||++||++|++|+||++..++++||++++....++. ...
T Consensus 627 lG~~v~q~Gs~v~~d~~rfDFs~~~----~lt~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~~~lf~~---ge~ 699 (752)
T 2zze_A 627 LGRHVWQAGSQLTTDWARLDISHYX----RISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQG---GVV 699 (752)
T ss_dssp HCTTCEEEEEEECSSCEEEEEECSS----CCCHHHHHHHHHHHHHHHHHTCBEEEEEEEHHHHHHHHCGGGCSS---CCC
T ss_pred cCCceeeecCcccCCceEEEEeCCC----CCCHHHHHHHHHHHHHHHHhCCccceeecCHHHHhhcchhhhhcC---CCC
Confidence 4444433333 34789999998764 899999999999999999999999999999999999876322210 111
Q ss_pred cccCCCCeEEEEEECCe-EeeecCcCccCccccccccccceeeEeec---CCceEEEeeccC
Q psy12008 82 VQQSIDGKVIVYRIKDH-IDISRGPMMSNTNHLGRCTIAAAQQVETD---AGLFYRFQGVAL 139 (458)
Q Consensus 82 ~~~~~~~~v~vy~~g~~-~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~---~g~~~Ri~g~s~ 139 (458)
..+.|++|++|+| +++|+||||+|||+|+ .|+|.+. +++..||..++.
T Consensus 700 ----ygd~VRVV~IGd~svelCGGTHV~nTgeIG------~fKIls~s~i~~GvrRIeavtG 751 (752)
T 2zze_A 700 ----PGREIRVVXIEDWDVQACGGTHLPSTGLVG------PIXILRTERIQDGVERIIFACG 751 (752)
T ss_dssp ----CSSEEEEEEETTTEEEECCSCCCSBGGGGC------CEEEEEEEEEETTEEEEEEEEC
T ss_pred ----CCCeEEEEEECCceeCCCCCCccCCHhHcc------EEEEEEEEEEcCCEEEEEEEeC
Confidence 1468999999997 8999999999999999 7777655 567899987763
No 16
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=99.49 E-value=3.6e-14 Score=133.81 Aligned_cols=91 Identities=10% Similarity=-0.010 Sum_probs=77.3
Q ss_pred cccCCCccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHHhhhccccccccccccccCC
Q psy12008 7 VRGKVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSI 86 (458)
Q Consensus 7 ~~~~~~~~~~Gfyyd~~~~~~~~~~it~~dl~~Ie~~m~~ii~~~~pi~~~~v~~eeA~~lF~~~~~K~~li~~~~~~~~ 86 (458)
...+++...++|||||..+. ++|++ +++||++||++|++|+||++..+++
T Consensus 119 ~~~g~~v~~~~~r~Df~~~~----~lt~e-l~~IE~~vn~~I~~~~pv~~~~~~~------------------------- 168 (216)
T 2e1b_A 119 QLVGSGMSVEKGRYDIAYPE----NLNKY-KEQIISLFNKYVDEGGEVKIWWEGD------------------------- 168 (216)
T ss_dssp EEEECCBCSSEEEEEEECSS----CGGGG-HHHHHHHHHHHHHHCCBEEEEESSS-------------------------
T ss_pred eeeeeeEcCCcEEEEEeCCC----CCCHH-HHHHHHHHHHHHhcCCCEEEEEcCC-------------------------
Confidence 34467777899999998764 68886 9999999999999999999987764
Q ss_pred CCeEEEEEECCe-EeeecCcCccCccccccccccceeeEeec---CCceEEEee
Q psy12008 87 DGKVIVYRIKDH-IDISRGPMMSNTNHLGRCTIAAAQQVETD---AGLFYRFQG 136 (458)
Q Consensus 87 ~~~v~vy~~g~~-~D~c~Gphv~~Tg~i~~~~i~~~f~l~~~---~g~~~Ri~g 136 (458)
|+++++|+| .++|+||||+|||+|+ .|+|.+. +++.+||.-
T Consensus 169 ---vRvv~ig~~~~~~CgGtHV~~TgeIg------~fkI~~~~~~~~g~rRi~~ 213 (216)
T 2e1b_A 169 ---RRYTQIRDFEVIPCGGTHVKDIKEIG------HIKKLKRSSIGRGKQRLEM 213 (216)
T ss_dssp ---CEEEEETTSCEECCCSCCCSBGGGTC------CEEEEEEEEEETTEEEEEE
T ss_pred ---EEEEEECCEEEECCCCCCcccHhhCc------eEEEEEEeEEcCCEEEEEE
Confidence 579999998 8999999999999999 7777664 467788763
No 17
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=99.37 E-value=1.5e-13 Score=111.08 Aligned_cols=71 Identities=37% Similarity=0.714 Sum_probs=66.0
Q ss_pred CCCCcEEEccc-CCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceecccCCCCcchhhHHHhhHH
Q psy12008 210 LPEDAELIMNK-NLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCS 285 (458)
Q Consensus 210 ~~~g~~~~~~~-g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~~~~~~g~~~~~~y~hS~~ 285 (458)
+++|+.+++.. | +|+.++|+.++..+++.+++|+|||+ ++||++|++.+|.|+||++++++| +++||||++
T Consensus 16 lpdG~~~~~~~~~-~T~~dia~~i~~~l~~~~vaakvNg~-l~dL~~~l~~d~~ve~vt~~~~eg---~~i~rHS~~ 87 (88)
T 1wwt_A 16 LPDGKQVDAESWK-TTPYQIACGISQGLADNTVIAKVNNV-VWDLDRPLEEDCTLELLKFEDEEA---QAVYSGPSS 87 (88)
T ss_dssp CTTSCEEEEETTT-CCHHHHHHHSSTTTGGGCCCEEESSS-EECSSSCCCSSEEEEECSSCCSCC---SCSCCCCSC
T ss_pred ECCCCEEEcccCC-CCHHHHHHHhhhccccceEEEEECCE-EECCCcCcCCCCEEEEEeCCCHHH---hhheeccCC
Confidence 46899988888 7 69999999999889999999999999 999999999999999999999999 789999974
No 18
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=98.67 E-value=2.8e-08 Score=76.76 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=56.0
Q ss_pred CCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceecccCCCC
Q psy12008 210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDP 273 (458)
Q Consensus 210 ~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~~~~~~g 273 (458)
.++|+.++++.|. |+.++|+.++..++..+++|+|||+ ++||+++|.+++.|+++++.+..-
T Consensus 7 ~p~g~~~~~~~g~-T~~dla~~i~~~l~~~~vaa~vNg~-lvdl~~~L~~~~~Veivt~~~~~~ 68 (73)
T 2kmm_A 7 TPKGEIKRLPQGA-TALDFAYSLHSDLGDHCIGAKVNHK-LVPLSYVLNSGDQVEVLSSKSLEH 68 (73)
T ss_dssp CTTCCEEEECTTC-BHHHHHHHHCSHHHHTEEEEEETTE-ECCTTCBCCSSSBEEEEECCCCCC
T ss_pred cCCCCEEEcCCCC-cHHHHHHHHhhccccceEEEEECCE-EeCCCcCcCCCCEEEEEECCCCcc
Confidence 4678899999995 9999999998888888999999999 999999999999999999988653
No 19
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=98.44 E-value=3.2e-07 Score=71.88 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=55.0
Q ss_pred CCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceecccCCC
Q psy12008 210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSD 272 (458)
Q Consensus 210 ~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~~~~~~ 272 (458)
.|+|+.++++.|. |+.|+|..+...++..+++|+|||+ +++|++||..++.||+++++.-+
T Consensus 12 tP~G~~~~lp~Ga-T~~D~A~~Ih~~lg~~~v~AkVNG~-~v~L~~~L~~gd~VeIit~~~~~ 72 (78)
T 3hvz_A 12 TPKGDVISLPIGS-TVIDFAYAIHSAVGNRMIGAKVDGR-IVPIDYKVKTGEIIDVLTTKELE 72 (78)
T ss_dssp CTTSCEEEEETTC-BHHHHHHHHCHHHHHTEEEEEETTE-EECTTCBCCTTCBEEEEECC---
T ss_pred CCCCCEEEecCCC-CHHHHHHHhhhhhhcceEEEEECCE-EcCCCcccCCCCEEEEEccCccc
Confidence 5789999999995 9999999999999999999999999 99999999999999999987644
No 20
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=92.89 E-value=0.16 Score=40.08 Aligned_cols=59 Identities=10% Similarity=0.085 Sum_probs=45.0
Q ss_pred eeEEEEeeCCCCcEEEcccC-CCCHHHHHhhccccccCceEEEEECCeEEeec----ccccccccccceecc
Q psy12008 202 KINVTYKGLPEDAELIMNKN-LSTPYNCAQHMSEMLCDRSVLALIDGVKLWDM----HRPLESDCELQLLHF 268 (458)
Q Consensus 202 ~i~v~~~~~~~g~~~~~~~g-~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL----~~pl~~d~~ve~l~~ 268 (458)
.++|++ +|..+++..+ . |+.++.+.+.. ....+++.+||+ +.+. .++|.++.+|+++.+
T Consensus 20 ~M~I~v----NGe~~el~~~~~-Tv~dLL~~L~~--~~~~vaVavNg~-iV~~~~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 20 RHMLQL----NGKDVKWKKDTG-TIQDLLASYQL--ENKIVIVERNKE-IIGKERYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp --CEEE----TTEEECCSSSCC-BHHHHHHHTTC--TTSCCEEEETTE-EECGGGTTTSBCCSSSEEEEEEE
T ss_pred ceEEEE----CCEEEECCCCCC-cHHHHHHHhCC--CCCCEEEEECCE-ECChhhcCCcCCCCCCEEEEEcc
Confidence 345665 6888888887 6 99999988864 345577899999 8875 578999899999875
No 21
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=92.60 E-value=0.11 Score=39.76 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=46.1
Q ss_pred eeEEEEeeCCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceecccC
Q psy12008 202 KINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYD 270 (458)
Q Consensus 202 ~i~v~~~~~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~~~~ 270 (458)
+++|++-+. .....+++.|. |..|+.+.+... ..-+++.+||+ ..+.+.+++ +..|+++.|=+
T Consensus 2 ~v~Vkl~g~-~~~~~ev~~g~-Tv~dLL~~Lgl~--~~~VvV~vNG~-~v~~d~~l~-GD~VeIv~~V~ 64 (74)
T 2l32_A 2 NVTVEVVGE-ETSEVAVDDDG-TYADLVRAVDLS--PHEVTVLVDGR-PVPEDQSVE-VDRVKVLRLIK 64 (74)
T ss_dssp EEEEECSSS-SEEEEECSTTC-SHHHHHHTTCCC--SSCCCEECCCC-CCCTTSSSC-CCCEEECSSCS
T ss_pred EEEEEEeCc-cceeEEcCCCC-cHHHHHHHcCCC--cceEEEEECCE-ECCHHHCCC-CCEEEEEEeec
Confidence 566776322 12247888895 999999998754 33447899999 999999886 77899988754
No 22
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=92.44 E-value=0.22 Score=36.90 Aligned_cols=53 Identities=8% Similarity=0.096 Sum_probs=42.6
Q ss_pred CCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeec----ccccccccccceecc
Q psy12008 212 EDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDM----HRPLESDCELQLLHF 268 (458)
Q Consensus 212 ~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL----~~pl~~d~~ve~l~~ 268 (458)
+|..++...+. |..++.+.+.. ....+++.+||+ +.+. .++|.++..|+++.+
T Consensus 6 Ng~~~~~~~~~-tv~~ll~~l~~--~~~~v~vavN~~-~v~~~~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 6 NDQAMQCAAGQ-TVHELLEQLDQ--RQAGAALAINQQ-IVPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp SSCEECCCTTC-CHHHHHHHHTC--CCSSEEEEETTE-EECHHHHTTCCCCTTEEECEEES
T ss_pred CCEEEEcCCCC-cHHHHHHHcCC--CCCCEEEEECCE-ECCchhcCCcCCCCCCEEEEEee
Confidence 67788888885 99999988764 345678899999 8875 688999889998865
No 23
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=91.70 E-value=0.42 Score=35.85 Aligned_cols=62 Identities=6% Similarity=-0.066 Sum_probs=45.2
Q ss_pred eEEEEeeCCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceecc
Q psy12008 203 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHF 268 (458)
Q Consensus 203 i~v~~~~~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~~ 268 (458)
++|++-+.++...++...+. |..++.+.+... ...+++.+||+ +.+...+|.++.+|+++.+
T Consensus 5 m~i~vNg~~~~~~~~~~~~~-tv~~Ll~~l~~~--~~~v~vavN~~-~v~~~~~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 5 MKFTVITDDGKKILESGAPR-RIKDVLGELEIP--IETVVVKKNGQ-IVIDEEEIFDGDIIEVIRV 66 (70)
T ss_dssp EEEEEEETTEEEEEEESSCC-BHHHHHHHTTCC--TTTEEEEETTE-ECCTTSBCCTTCEEEEEEC
T ss_pred EEEEEeCccCceeEECCCCC-cHHHHHHHhCCC--CCCEEEEECCE-ECCCcccCCCCCEEEEEec
Confidence 45565222222337777884 999999887643 34567889999 9999999999999999875
No 24
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=90.68 E-value=0.52 Score=34.56 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=41.2
Q ss_pred CCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecc----cccccccccceecc
Q psy12008 212 EDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMH----RPLESDCELQLLHF 268 (458)
Q Consensus 212 ~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~----~pl~~d~~ve~l~~ 268 (458)
+|+.+++ .+. |..++.+.+... ...+++.+||+ +.+.. ++|.++.+|+++.+
T Consensus 5 Ng~~~~~-~~~-tv~~ll~~l~~~--~~~v~vavN~~-~v~~~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 5 NGEPRPL-EGK-TLKEVLEEMGVE--LKGVAVLLNEE-AFLGLEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp TTEEECC-TTC-CHHHHHHHHTBC--GGGEEEEETTE-EEEGGGCCCCCCCTTCEEEEEEC
T ss_pred CCEEEEc-CCC-cHHHHHHHcCCC--CCcEEEEECCE-ECCccccCCcCCCCCCEEEEEee
Confidence 5777777 774 999999888643 45577889999 88865 89999889999865
No 25
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=90.57 E-value=0.29 Score=37.70 Aligned_cols=55 Identities=9% Similarity=0.151 Sum_probs=42.7
Q ss_pred CCcEEEcc--cCCCCHHHHHhhccccccCceEEEEECCeEEeecc----cccccccccceeccc
Q psy12008 212 EDAELIMN--KNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMH----RPLESDCELQLLHFY 269 (458)
Q Consensus 212 ~g~~~~~~--~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~----~pl~~d~~ve~l~~~ 269 (458)
+|..+++. .+. |+.++.+.+...- ...+++.+||+ +++.. ++|.++..||++.+=
T Consensus 6 NGe~~e~~~~~~~-Tl~~LL~~l~~~~-~~~vAVavNg~-iVpr~~~~~~~L~dGD~IEIv~~V 66 (78)
T 2k5p_A 6 NGKPSTVDGAESL-NVTELLSALKVAQ-AEYVTVELNGE-VLEREAFDATTVKDGDAVEFLYFM 66 (78)
T ss_dssp TTEEEECSSCSCE-EHHHHHHHHTCSC-TTTCCEEETTE-ECCTTHHHHCEECSSBCEEECCCC
T ss_pred CCEEEEcCCCCCC-cHHHHHHHcCCCC-CCcEEEEECCE-ECChHHcCcccCCCCCEEEEEeee
Confidence 57788887 775 9999998876431 34567889999 88864 789998999998874
No 26
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=90.36 E-value=0.33 Score=36.90 Aligned_cols=53 Identities=6% Similarity=0.026 Sum_probs=41.6
Q ss_pred CCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeec----ccccccccccceeccc
Q psy12008 212 EDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDM----HRPLESDCELQLLHFY 269 (458)
Q Consensus 212 ~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL----~~pl~~d~~ve~l~~~ 269 (458)
+|..+++ .+. |+.++.+.+... ...+|+.+||+ +++. .++|.++..|+++.+-
T Consensus 6 NG~~~e~-~~~-Tl~~LL~~l~~~--~~~vAV~vNg~-iVpr~~~~~~~L~dGD~veIv~~V 62 (73)
T 2kl0_A 6 NGEQREV-QSA-SVAALMTELDCT--GGHFAVALNYD-VVPRGKWDETPVTAGDEIEILTPR 62 (73)
T ss_dssp TTEEECC-CCS-BHHHHHHHTTCC--SSSCEEEESSS-EECHHHHTTCBCCTTCEEEEECCC
T ss_pred CCEEEEc-CCC-cHHHHHHHcCCC--CCcEEEEECCE-ECChHHcCcccCCCCCEEEEEccc
Confidence 5777777 774 999999887643 44567899999 8875 4789998999998874
No 27
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=86.20 E-value=0.62 Score=35.56 Aligned_cols=53 Identities=8% Similarity=0.080 Sum_probs=41.4
Q ss_pred CCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceecc
Q psy12008 212 EDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHF 268 (458)
Q Consensus 212 ~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~~ 268 (458)
++..++...+. |..++.+.+... ...+++.|||+ +.+..++|.++.+|+++..
T Consensus 21 n~~~~~~~~~~-Tv~dLl~~L~~~--~~~v~VavNg~-~v~~~~~L~dGD~V~i~pp 73 (77)
T 1rws_A 21 IEKEIEWREGM-KVRDILRAVGFN--TESAIAKVNGK-VVLEDDEVKDGDFVEVIPV 73 (77)
T ss_dssp CCCCCCCCSSC-CHHHHHHTTTCS--SCSSCEEETTE-EECSSSCCCSSCCCBCSCC
T ss_pred CCEEEECCCCC-cHHHHHHHhCCC--CcCEEEEECCE-ECCCCCCcCCCCEEEEEcc
Confidence 45555666774 999999887643 34467889999 9999999999999998764
No 28
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=85.50 E-value=0.91 Score=36.24 Aligned_cols=51 Identities=10% Similarity=0.120 Sum_probs=38.8
Q ss_pred EEEcccCCCCHHHHHhhcccccc-------------CceEEEEECCeEEeecccccccccccceec
Q psy12008 215 ELIMNKNLSTPYNCAQHMSEMLC-------------DRSVLALIDGVKLWDMHRPLESDCELQLLH 267 (458)
Q Consensus 215 ~~~~~~g~tT~~~iak~i~~~l~-------------~~~v~a~vng~~~~dL~~pl~~d~~ve~l~ 267 (458)
.+++..+ +|..++...+...++ ...+++.|||+ +++++++|.++.+|.++.
T Consensus 30 ~~e~~~~-~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~-~v~~~~~L~dGDeV~i~p 93 (98)
T 1vjk_A 30 EIELPEG-ARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGR-YVSWDEELKDGDVVGVFP 93 (98)
T ss_dssp EEEECTT-CBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTB-CCCTTCBCCTTCEEEEES
T ss_pred EEECCCC-CCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCE-ECCCCCCCCCCCEEEEEC
Confidence 3455566 499888887765432 24578999999 999999999999998875
No 29
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=84.43 E-value=3.6 Score=32.69 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=43.1
Q ss_pred EEc-ccCCCCHHHHHhhccccccCceEEEEE-------CCeEEeecccccccccccceeccc
Q psy12008 216 LIM-NKNLSTPYNCAQHMSEMLCDRSVLALI-------DGVKLWDMHRPLESDCELQLLHFY 269 (458)
Q Consensus 216 ~~~-~~g~tT~~~iak~i~~~l~~~~v~a~v-------ng~~~~dL~~pl~~d~~ve~l~~~ 269 (458)
+.+ ..|. |+.|+|.++...+.+...-|.| |++ -+.++++|.+..-|+++.-.
T Consensus 29 viL~~~Gs-Tv~Dfa~~IH~di~~~fkyA~VwG~saK~~~q-rVgldh~L~d~DVV~Iv~~~ 88 (93)
T 2eki_A 29 VVLPYSRT-TVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQ-KVGKDHTLEDEDVIQIVKKS 88 (93)
T ss_dssp EEEETTSC-CHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSE-EECSSCCCCSSEEECEEECC
T ss_pred EEEecCCC-CHHHHHHHHHHHHHhhccEEEEecccccCCCE-ECCCCcEecCCCEEEEEeCC
Confidence 667 7884 9999999999999888777666 899 89999999976668887643
No 30
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=72.14 E-value=6.8 Score=29.23 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=41.4
Q ss_pred eeEEEEee-CCCCcEEEcccCCCCHHHHHhhcccccc----CceEEEEECCeEE-eecccccccccccceec
Q psy12008 202 KINVTYKG-LPEDAELIMNKNLSTPYNCAQHMSEMLC----DRSVLALIDGVKL-WDMHRPLESDCELQLLH 267 (458)
Q Consensus 202 ~i~v~~~~-~~~g~~~~~~~g~tT~~~iak~i~~~l~----~~~v~a~vng~~~-~dL~~pl~~d~~ve~l~ 267 (458)
+++|++-+ ..+ ..++. .+ +|..++...+....+ ...+++.|||+ + .+.++++.++.+|.++-
T Consensus 2 ~v~V~~fa~l~~-~~~e~-~~-~tv~~ll~~L~~~~~l~~~l~~~~vavN~~-~v~~~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 2 MVEVRFFGPIKE-ENFFI-KA-NDLKELRAILQEKEGLKEWLGVCAIALNDH-LIDNLNTPLKDGDVISLLP 69 (74)
T ss_dssp EEEEEECTTCCC-CCEEE-EC-SSHHHHHHHHHTCTTTTTTTTTCEEEESSS-EECCTTCCCCTTCEEEEEC
T ss_pred EEEEEEEeecce-eEEee-CC-CcHHHHHHHHHHCcCHHHHhhccEEEECCE-EcCCCCcCCCCCCEEEEEC
Confidence 35566521 122 34555 56 499999888765421 14578889999 7 66899999988888864
No 31
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=70.00 E-value=2.6 Score=31.59 Aligned_cols=48 Identities=8% Similarity=0.037 Sum_probs=35.7
Q ss_pred ccCCCCHHHHHhhccccccC-ceE--EEEECCeEEeecccccccccccceecc
Q psy12008 219 NKNLSTPYNCAQHMSEMLCD-RSV--LALIDGVKLWDMHRPLESDCELQLLHF 268 (458)
Q Consensus 219 ~~g~tT~~~iak~i~~~l~~-~~v--~a~vng~~~~dL~~pl~~d~~ve~l~~ 268 (458)
..+. |..++...+...++. .-+ ++.|||+ +.+.+++|.++.+|+++..
T Consensus 23 ~~~~-tv~~ll~~l~~~~p~~~~v~~~v~vNg~-~v~~~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 23 EQAL-TVQQFEDLLFERYPQINNKKFQVAVNEE-FVQKSDFIQPNDTVALIPP 73 (77)
T ss_dssp SSCE-EHHHHHHHHHHHCGGGTTCCCEEEETTE-EECTTSEECTTCEEEEECS
T ss_pred CCCC-CHHHHHHHHHHHCcchhcceEEEEECCE-ECCCCCCcCCCCEEEEECC
Confidence 3453 888888877655321 224 7889999 9999999999989998754
No 32
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=67.68 E-value=5 Score=31.01 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=36.1
Q ss_pred EcccCCCCHHHHHhhccccccC-------------ceEEEEECCeEEeecccccccccccceec
Q psy12008 217 IMNKNLSTPYNCAQHMSEMLCD-------------RSVLALIDGVKLWDMHRPLESDCELQLLH 267 (458)
Q Consensus 217 ~~~~g~tT~~~iak~i~~~l~~-------------~~v~a~vng~~~~dL~~pl~~d~~ve~l~ 267 (458)
+...+ +|..++...+...++. +.+.+.|||+ .++.+++|.++.+|.++-
T Consensus 23 ~~~~~-~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~-~v~~~~~l~~gDeV~i~P 84 (89)
T 3po0_A 23 DVDGD-ATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGE-AAALGEATAAGDELALFP 84 (89)
T ss_dssp ECCTT-CBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTE-ECCTTSBCCTTCEEEEEC
T ss_pred ECCCC-CcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCE-ECCCCcccCCCCEEEEEC
Confidence 34455 3888888777654421 2367889999 999999999988888763
No 33
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=65.87 E-value=3.2 Score=33.27 Aligned_cols=57 Identities=9% Similarity=0.002 Sum_probs=40.9
Q ss_pred EEcccCCCCHHHHHhhcccccc-----CceEEEEECCeEEeecccccccccccceecccCCCCc
Q psy12008 216 LIMNKNLSTPYNCAQHMSEMLC-----DRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPY 274 (458)
Q Consensus 216 ~~~~~g~tT~~~iak~i~~~l~-----~~~v~a~vng~~~~dL~~pl~~d~~ve~l~~~~~~g~ 274 (458)
+++..|. |..++...+..... -..++..|||+ ..+++++|.++..||++.+=..|.+
T Consensus 30 ~~v~~g~-TV~daI~~~gi~~~~peIdl~~~~V~Vng~-~v~~d~~L~dGDRVEIyrpl~~DPk 91 (97)
T 2hj1_A 30 FQVDEGI-TVQTAITQSGILSQFPEIDLSTNKIGIFSR-PIKLTDVLKEGDRIEIYRPLLADPK 91 (97)
T ss_dssp EEEETTC-BHHHHHHHHTHHHHCTTCCTTTSEEEEEEC-SCCTTCBCCTTCEEEECCCCC----
T ss_pred EEcCCCC-cHHHHHHHcCCCccCCcccccccEEEEcCE-ECCCCccCCCCCEEEEEecccCCHH
Confidence 4677885 99999888765221 12467889999 9999999999999998777666653
No 34
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=62.10 E-value=11 Score=28.37 Aligned_cols=44 Identities=25% Similarity=0.309 Sum_probs=33.8
Q ss_pred CCHHHHHhhccccc-------cCceEEEEECCeEEeecccccccccccceec
Q psy12008 223 STPYNCAQHMSEML-------CDRSVLALIDGVKLWDMHRPLESDCELQLLH 267 (458)
Q Consensus 223 tT~~~iak~i~~~l-------~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~ 267 (458)
+|..++...+...+ ....+++.|||+ +.+.++++.++.+|.++-
T Consensus 26 ~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~-~v~~~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 26 PTVEALRQHMAAQSDRWALALEDGKLLAAVNQT-LVSFDHPLTDGDEVAFFP 76 (81)
T ss_dssp SBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTE-ECCTTCBCCTTCEEEEEC
T ss_pred CCHHHHHHHHHHHChhHHHHhcCCCEEEEECCE-ECCCCCCCCCCCEEEEeC
Confidence 48888888776442 123367889999 999999999988898864
No 35
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=61.11 E-value=7.3 Score=29.91 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=37.3
Q ss_pred EEEcccCCCCHHHHHhhcccccc-------------CceEEEEECCeEEee----cccccccccccceecc
Q psy12008 215 ELIMNKNLSTPYNCAQHMSEMLC-------------DRSVLALIDGVKLWD----MHRPLESDCELQLLHF 268 (458)
Q Consensus 215 ~~~~~~g~tT~~~iak~i~~~l~-------------~~~v~a~vng~~~~d----L~~pl~~d~~ve~l~~ 268 (458)
..+++.+ +|..++.+.+...++ ...+++.|||+ +++ +++++.++.+|+++..
T Consensus 18 ~~~~~~~-~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~-~v~~~~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 18 EETFNGI-SKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGN-NITSMKGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp EEEESSC-CBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSS-BGGGTCSSSCBCCTTCEEEEECC
T ss_pred EEEcCCC-CcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCE-EccccCCCCcCCCCCCEEEEeCC
Confidence 4445555 498888888765532 14568899999 886 6889998888988753
No 36
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=46.79 E-value=26 Score=27.06 Aligned_cols=50 Identities=10% Similarity=0.071 Sum_probs=35.4
Q ss_pred EEEcccCCCCHHHHHhhcccccc-------C--------ceEEEEECCeEEee----cccccccccccceec
Q psy12008 215 ELIMNKNLSTPYNCAQHMSEMLC-------D--------RSVLALIDGVKLWD----MHRPLESDCELQLLH 267 (458)
Q Consensus 215 ~~~~~~g~tT~~~iak~i~~~l~-------~--------~~v~a~vng~~~~d----L~~pl~~d~~ve~l~ 267 (458)
.++ ..+ +|..++...+...++ . +.+.+.|||+ .++ ++++|.++.+|.++-
T Consensus 20 ~~~-~~~-~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~-~v~~~~~~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 20 SVS-ASG-DTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDE-DVRFSGGLATAIADGDSVTILP 88 (93)
T ss_dssp EEE-ECC-SBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTE-EGGGTTGGGCBCCTTCEEEEEE
T ss_pred EEe-cCC-CCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCE-EccCcCCCCcCCCCCCEEEEEC
Confidence 344 345 489888877765432 1 1478899999 887 688999888888763
No 37
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=30.25 E-value=32 Score=27.03 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=35.8
Q ss_pred EEEcccCCCCHHHHHhhcccccc---Cc---------eE-------EEEECCeEEe----ecccccccccccceecc
Q psy12008 215 ELIMNKNLSTPYNCAQHMSEMLC---DR---------SV-------LALIDGVKLW----DMHRPLESDCELQLLHF 268 (458)
Q Consensus 215 ~~~~~~g~tT~~~iak~i~~~l~---~~---------~v-------~a~vng~~~~----dL~~pl~~d~~ve~l~~ 268 (458)
..+++ + +|..++...+...++ .. -+ ++.|||+ ++ +++++|.++.+|.++..
T Consensus 22 ~~~l~-~-~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~-~v~~~~~~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 22 ELPLS-G-EKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGN-NIRHLEGLETLLKDSDEIGILPP 95 (99)
T ss_dssp EEEEE-C-SSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTS-CGGGTTSTTSCCCTTEEEEEECC
T ss_pred eEEEe-C-CcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCE-EccccCCCCCCCCCCCEEEEECC
Confidence 44555 5 499888887755432 11 24 7889999 77 67889998888888653
No 38
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=28.88 E-value=48 Score=28.92 Aligned_cols=72 Identities=17% Similarity=0.081 Sum_probs=44.3
Q ss_pred CCHHHHHhhcccccc------------CceEEEEECCeEEeec----ccccccccccceecccCCCCcchhhHHHhhHHH
Q psy12008 223 STPYNCAQHMSEMLC------------DRSVLALIDGVKLWDM----HRPLESDCELQLLHFYDSDPYHSNRTFWRSCSI 286 (458)
Q Consensus 223 tT~~~iak~i~~~l~------------~~~v~a~vng~~~~dL----~~pl~~d~~ve~l~~~~~~g~~~~~~y~hS~~~ 286 (458)
+|..++.+.+...++ ...+++.|||+ +++. +++|.++.+|.++..-+- |. ....+.+-..-
T Consensus 23 ~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~-~v~~~~~~dt~L~dGDeVai~PpVsG-G~-~~~~~~~~~~~ 99 (168)
T 1v8c_A 23 ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGR-DVRYLQGLSTPLSPGATLDLFPPVAG-GG-FERTFGAFPPW 99 (168)
T ss_dssp SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTE-EGGGTTGGGCBCCTTCEEEEECSCCS-EE-EEEEEETCCHH
T ss_pred CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCE-ECCCcCCCccCCCCCCEEEEECcccc-cc-chhhhhhCCHH
Confidence 488888887765431 24468899999 8886 889999888998765331 10 00112233334
Q ss_pred HHHHHHHHHcC
Q psy12008 287 MLGSVLSNAFK 297 (458)
Q Consensus 287 lL~~A~~~~f~ 297 (458)
.+..-++++-+
T Consensus 100 ~~~~~i~ei~~ 110 (168)
T 1v8c_A 100 LLERYLEEWGG 110 (168)
T ss_dssp HHHHHHHHTTC
T ss_pred HhhhhhhhcCH
Confidence 45555666554
No 39
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=25.92 E-value=23 Score=35.42 Aligned_cols=52 Identities=15% Similarity=0.072 Sum_probs=43.0
Q ss_pred cEEEcccCCCCHHHHHhhccccccCceEEE--EECCeEEeecccccccccccceec
Q psy12008 214 AELIMNKNLSTPYNCAQHMSEMLCDRSVLA--LIDGVKLWDMHRPLESDCELQLLH 267 (458)
Q Consensus 214 ~~~~~~~g~tT~~~iak~i~~~l~~~~v~a--~vng~~~~dL~~pl~~d~~ve~l~ 267 (458)
....+..|. |+.|+|..+...+.+..+.| .+|+. ...+++++.+..-|++++
T Consensus 341 ~~~~l~~G~-t~~d~a~~iH~d~~~~f~~a~~~~~~~-~~g~~~~l~dgDvv~i~~ 394 (397)
T 1wxq_A 341 HVFLMKKGS-TPRDLAFKVHTDLGKGFLYAINARTKR-RVGEDYELQFNDIVKIVS 394 (397)
T ss_dssp CCEEEETTC-CHHHHHHHHCHHHHHTEEEEEETTTCS-BCCTTCCCCTTEEEEEEE
T ss_pred eeEEeCCCC-CHHHHHHHHhHHHHhhhhhhHHhcCCE-EcCCCccccCCCEEEEEe
Confidence 567788895 99999999998888888877 67888 788999998765688775
Done!