RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12008
(458 letters)
>gnl|CDD|178496 PLN02908, PLN02908, threonyl-tRNA synthetase.
Length = 686
Score = 115 bits (290), Expect = 1e-27
Identities = 72/237 (30%), Positives = 117/237 (49%), Gaps = 22/237 (9%)
Query: 179 VQKQNDIFNKEFKRQQNAVGRI--EKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEML 236
++K+ ++F K RQ + + I VT LP+ A K ++TP + A+ +S+ L
Sbjct: 26 IKKRIELFEKIQARQLARLESAGGDPIKVT---LPDGAVKDGKKWVTTPMDIAKEISKGL 82
Query: 237 CDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAF 296
+ +++A +DGV LWDM RPLE DC+L+L F D + TFW S + +LG L +
Sbjct: 83 ANSALIAQVDGV-LWDMTRPLEGDCKLKLFKFDDDE---GRDTFWHSSAHILGEALELEY 138
Query: 297 KDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL 356
+L P G F YD + + + + A K E PFER+
Sbjct: 139 G----CKLCIGPCTTRGEG-FYYDAFYG---DRTLNEEDFKPIEARAEKAVKEKQPFERI 190
Query: 357 SISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVI-VYRIKDHIDISRGPMMSNTNHL 412
++++ A +F NK+K+E I+ + I VYR +D+ RGP + NT+ +
Sbjct: 191 EVTREEALEMFSENKFKVE----IINDLPEDATITVYRCGPLVDLCRGPHIPNTSFV 243
Score = 55.2 bits (133), Expect = 4e-08
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 40 LSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVI-VYRIKDH 98
+ A K E PFER+ ++++ A +F NK+K+E I+ + I VYR
Sbjct: 173 IEARAEKAVKEKQPFERIEVTREEALEMFSENKFKVE----IINDLPEDATITVYRCGPL 228
Query: 99 IDISRGPMMSNTNHL 113
+D+ RGP + NT+ +
Sbjct: 229 VDLCRGPHIPNTSFV 243
>gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 638
Score = 75.1 bits (186), Expect = 2e-14
Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 37/202 (18%)
Query: 223 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 282
T + A +S L +V ++G +L D+ P+E D L+++ D +
Sbjct: 18 VTVADVAASISPGLAKAAVAGKVNG-ELVDLSTPIEEDASLEIITAKDEE---GLEIIRH 73
Query: 283 SCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSG-------SFVYDVQLSGVDNWKP-TSA 334
S + +L+ A K +L+ P+ K F YD D +P T
Sbjct: 74 SAA----HLLAQAVK-----RLY----PDAKLTIGPVIENGFYYD-----FDRERPFTPE 115
Query: 335 ELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH--NKYKLEQIPSIVQQSIDGKVI-V 391
+L + EM ++ E P ER +S++ A LF+ YK+E I I + + I +
Sbjct: 116 DLEAIEKEMKEIIKENYPIEREVVSREEAIELFKDRGEPYKVELIEEI----PEDEEISL 171
Query: 392 YRIKDHIDISRGPMMSNTNHLG 413
YR + +D+ RGP + +T +
Sbjct: 172 YRQGEFVDLCRGPHVPSTGKIK 193
Score = 52.4 bits (127), Expect = 3e-07
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 18 FVYDVQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH--NKYK 74
F YD D +P T +L + EM ++ E P ER +S++ A LF+ YK
Sbjct: 102 FYYDF-----DRERPFTPEDLEAIEKEMKEIIKENYPIEREVVSREEAIELFKDRGEPYK 156
Query: 75 LEQIPSIVQQSIDGKVI-VYRIKDHIDISRGPMMSNTNHLG 114
+E I I + + I +YR + +D+ RGP + +T +
Sbjct: 157 VELIEEI----PEDEEISLYRQGEFVDLCRGPHVPSTGKIK 193
>gnl|CDD|133437 cd01667, TGS_ThrRS_N, TGS _ThrRS_N: ThrRS (threonyl-tRNA
Synthetase) is a class II tRNA synthetase that couples
threonine to its cognate tRNA. In addition to its
catalytic and anticodon-binding domains, ThrRS has an
N-terminal TGS domain, named after the ThrRS, GTPase,
and SpoT proteins where it occurs. The TGS domain is
thought to interact with the tRNA acceptor arm along
with an adjacent N-terminal domain. The specific
function of TGS is not well understood.
Length = 61
Score = 65.6 bits (161), Expect = 7e-14
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 203 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 262
I +T LP+ + K +TP + A+ +S L ++V A ++G +L D+ RPLE DCE
Sbjct: 1 IKIT---LPDGSVKEFPKG-TTPLDIAKSISPGLAKKAVAAKVNG-ELVDLSRPLEEDCE 55
Query: 263 LQLLHF 268
L+++ F
Sbjct: 56 LEIITF 61
>gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 575
Score = 64.4 bits (158), Expect = 5e-11
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 310 PNVKSGSFVYDVQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFE 368
P ++ G F YD D +P T +L+ + +M K+ +PFER +S++ A F
Sbjct: 34 PPIEDG-FYYDF-----DVPEPFTPEDLKKIEKKMKKIIKRGLPFEREEVSREEAREEFA 87
Query: 369 HNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHL 412
+ YKLE ++ + + +Y D D+ RGP + NT +
Sbjct: 88 NEPYKLE----LIDDIPEEGITIYDNGDFEDLCRGPHVPNTKFI 127
Score = 61.7 bits (151), Expect = 3e-10
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 18 FVYDVQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLE 76
F YD D +P T +L+ + +M K+ +PFER +S++ A F + YKLE
Sbjct: 40 FYYDF-----DVPEPFTPEDLKKIEKKMKKIIKRGLPFEREEVSREEAREEFANEPYKLE 94
Query: 77 QIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHL 113
++ + + +Y D D+ RGP + NT +
Sbjct: 95 ----LIDDIPEEGITIYDNGDFEDLCRGPHVPNTKFI 127
>gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed.
Length = 639
Score = 50.5 bits (121), Expect = 1e-06
Identities = 48/189 (25%), Positives = 93/189 (49%), Gaps = 25/189 (13%)
Query: 229 AQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIML 288
A +S L ++V ++ KL+D+ R LE D E++++ DS+ R +
Sbjct: 28 AGSISSSLKKKAVAGKVND-KLYDLRRNLEEDAEVEIITI-DSN---EGVEIARHSA--- 79
Query: 289 GSVLSNAFK---DNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVK 345
+L+ A K +V + + P +++G F YD+ L +LR + EM K
Sbjct: 80 AHILAQAVKRLYGDVNLGV----GPVIENG-FYYDMDLPS----SVNVEDLRKIEKEMKK 130
Query: 346 LAYEAVPFERLSISQDLAEALFE--HNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRG 403
+ E + ER+ +S++ A LF+ +++ KLE + +I + +Y+ + +D+ RG
Sbjct: 131 IINENIKIERVEVSREEAAKLFQEMNDRLKLELLEAIPS---GESITLYKQGEFVDLCRG 187
Query: 404 PMMSNTNHL 412
P + +T +L
Sbjct: 188 PHLPSTGYL 196
Score = 49.0 bits (117), Expect = 4e-06
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 9 GKVSLKSG-----SFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDL 63
G V+L G F YD+ L +LR + EM K+ E + ER+ +S++
Sbjct: 92 GDVNLGVGPVIENGFYYDMDLPS----SVNVEDLRKIEKEMKKIINENIKIERVEVSREE 147
Query: 64 AEALFE--HNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHL 113
A LF+ +++ KLE + +I + +Y+ + +D+ RGP + +T +L
Sbjct: 148 AAKLFQEMNDRLKLELLEAIPS---GESITLYKQGEFVDLCRGPHLPSTGYL 196
>gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 589
Score = 48.0 bits (115), Expect = 6e-06
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 21/134 (15%)
Query: 280 FWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKP-TSAELRV 338
SC+ +L + + D P ++ G F YD + +P T +L
Sbjct: 29 IRHSCAHVLAQAVKRLYPDVTIG-------PVIEEG-FYYDFDVK-----EPITPEDLLK 75
Query: 339 LSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHI 398
+ EM ++A E +P ER +S++ A A F YK E I + Y + +
Sbjct: 76 IEKEMKEIAKENLPIEREVVSREEARAPFG--PYKAELI-----DCKGHPLSEYSQGEFV 128
Query: 399 DISRGPMMSNTNHL 412
D+ RGP + +T +
Sbjct: 129 DLCRGPHVPSTGKI 142
Score = 45.7 bits (109), Expect = 4e-05
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Query: 18 FVYDVQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLE 76
F YD + +P T +L + EM ++A E +P ER +S++ A A F YK E
Sbjct: 58 FYYDFDVK-----EPITPEDLLKIEKEMKEIAKENLPIEREVVSREEARAPFG--PYKAE 110
Query: 77 QIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHL 113
I + Y + +D+ RGP + +T +
Sbjct: 111 LI-----DCKGHPLSEYSQGEFVDLCRGPHVPSTGKI 142
>gnl|CDD|217243 pfam02824, TGS, TGS domain. The TGS domain is named after ThrRS,
GTPase, and SpoT. Interestingly, TGS domain was detected
also at the amino terminus of the uridine kinase from
the spirochaete Treponema pallidum (but not any other
organism, including the related spirochaete Borrelia
burgdorferi). TGS is a small domain that consists of ~50
amino acid residues and is predicted to possess a
predominantly beta-sheet structure. There is no direct
information on the functions of the TGS domain, but its
presence in two types of regulatory proteins (the
GTPases and guanosine polyphosphate
phosphohydrolases/synthetases) suggests a ligand (most
likely nucleotide)-binding, regulatory role.
Length = 60
Score = 39.4 bits (93), Expect = 1e-04
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 223 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLL 266
STP + A + L + + A ++G + + LE ++++
Sbjct: 17 STPEDFAYAIHTDLGKKFIGAKVNG-QRVGLDHVLEDGDVVEIV 59
>gnl|CDD|232967 TIGR00418, thrS, threonyl-tRNA synthetase. This model represents
the threonyl-tRNA synthetase found in most organisms.
This protein is a class II tRNA synthetase, and is
recognized by the pfam model tRNA-synt_2b. Note that B.
subtilis has closely related isozymes thrS and thrZ. The
N-terminal regions are quite dissimilar between archaeal
and eubacterial forms, while some eukaryotic forms are
missing sequence there altogether. [Protein synthesis,
tRNA aminoacylation].
Length = 563
Score = 43.5 bits (103), Expect = 2e-04
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 291 VLSNAFKDN-VEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYE 349
+L+ A K +V+L P V+ G F YD +L T +L + +M ++A +
Sbjct: 7 LLAEALKQLYPDVKLAIGPV--VEDG-FYYDFELDR----SFTQEDLEKIEKDMKEIAKK 59
Query: 350 AVPFERLSISQDLAEALFEHNK-YKLEQIPSIVQQSIDGKVIVYRIKDH-IDISRGPMMS 407
P +LS+S + A F+ + YKLE + I K Y +D+ +GP +
Sbjct: 60 NYPVAKLSVSLEEALEAFKVLEPYKLELLDEI---PNGVKRTPYGWGKAFVDLCKGPHLP 116
Query: 408 NTN 410
NT+
Sbjct: 117 NTS 119
Score = 38.5 bits (90), Expect = 0.006
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 33 TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNK-YKLEQIPSIVQQSIDGKVI 91
T +L + +M ++A + P +LS+S + A F+ + YKLE + I K
Sbjct: 42 TQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFKVLEPYKLELLDEI---PNGVKRT 98
Query: 92 VYRIKDH-IDISRGPMMSNTN 111
Y +D+ +GP + NT+
Sbjct: 99 PYGWGKAFVDLCKGPHLPNTS 119
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 34.3 bits (79), Expect = 0.080
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 5 NDVRGKVSLKSGSFVYDVQLSGVDN--WKPTSAE 36
N G VS K Y V + VDN WKPT E
Sbjct: 179 NKAIGTVSDKDSGKKYRVYIEWVDNEGWKPTKVE 212
>gnl|CDD|128752 smart00476, DNaseIc, deoxyribonuclease I. Deoxyribonuclease I
catalyzes the endonucleolytic cleavage of
double-stranded DNA. The enzyme is secreted outside the
cell and also involved in apoptosis in the nucleus.
Length = 276
Score = 31.3 bits (71), Expect = 0.85
Identities = 20/64 (31%), Positives = 26/64 (40%)
Query: 267 HFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGV 326
+ YD N F R ++ S S A K+ V V LH+ P V +YDV L
Sbjct: 112 YLYDDGCECGNDVFSREPFVVKFSSPSTAVKEFVIVPLHTTPEAAVAEIDALYDVYLDVR 171
Query: 327 DNWK 330
W
Sbjct: 172 QKWG 175
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 30.4 bits (69), Expect = 2.3
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 75 LEQIPSIVQQSIDGKVIVYRIKDHIDIS 102
L+++P IV IDG IVYR +++DIS
Sbjct: 259 LKKMP-IVNAYIDGDEIVYR--NYVDIS 283
Score = 30.4 bits (69), Expect = 2.3
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 374 LEQIPSIVQQSIDGKVIVYRIKDHIDIS 401
L+++P IV IDG IVYR +++DIS
Sbjct: 259 LKKMP-IVNAYIDGDEIVYR--NYVDIS 283
>gnl|CDD|131251 TIGR02196, GlrX_YruB, Glutaredoxin-like protein, YruB-family. This
glutaredoxin-like protein family contains the conserved
CxxC motif and includes the Clostridium pasteurianum
protein YruB which has been cloned from a rubredoxin
operon. Somewhat related to NrdH, it is unknown whether
this protein actually interacts with
glutathione/glutathione reducatase, or, like NrdH, some
other reductant system.
Length = 74
Score = 27.7 bits (62), Expect = 2.9
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 52 VPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHID 100
+ FE + + +D A +P IV I K+IV + +D
Sbjct: 25 IAFEEIDVEKDSAAREEVLKVLGQRGVPVIV---IGHKIIVGFDPEKLD 70
Score = 27.7 bits (62), Expect = 2.9
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 351 VPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHID 399
+ FE + + +D A +P IV I K+IV + +D
Sbjct: 25 IAFEEIDVEKDSAAREEVLKVLGQRGVPVIV---IGHKIIVGFDPEKLD 70
>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional.
Length = 298
Score = 29.5 bits (66), Expect = 3.5
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 15 SGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYK 74
+G ++Y + L+ V T L + A +L EAVPFERL EA +
Sbjct: 158 TGMWLYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERL-------EARVAEVATE 210
Query: 75 LEQIP 79
L +IP
Sbjct: 211 LARIP 215
Score = 29.5 bits (66), Expect = 3.5
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 314 SGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYK 373
+G ++Y + L+ V T L + A +L EAVPFERL EA +
Sbjct: 158 TGMWLYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERL-------EARVAEVATE 210
Query: 374 LEQIP 378
L +IP
Sbjct: 211 LARIP 215
>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These
alcohol dehydrogenases are related to the cinnamyl
alcohol dehydrogenases (CAD), members of the medium
chain dehydrogenase/reductase family.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. Cinnamyl alcohol dehydrogenases
(CAD) reduce cinnamaldehydes to cinnamyl alcohols in the
last step of monolignal metabolism in plant cells walls.
CAD binds 2 zinc ions and is NADPH- dependent. CAD
family members are also found in non-plant species, e.g.
in yeast where they have an aldehyde reductase activity.
The medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 341
Score = 29.4 bits (67), Expect = 3.7
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 10/44 (22%)
Query: 61 QDLAEAL---FEHN------KYKLEQIPSIVQQSIDGKVIVYRI 95
QDL EAL LE + + ++ +GK I R+
Sbjct: 295 QDLQEALEFAARGKVKPHIQVVPLEDLNEVFEKMEEGK-IAGRV 337
Score = 29.4 bits (67), Expect = 3.7
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 10/44 (22%)
Query: 360 QDLAEAL---FEHN------KYKLEQIPSIVQQSIDGKVIVYRI 394
QDL EAL LE + + ++ +GK I R+
Sbjct: 295 QDLQEALEFAARGKVKPHIQVVPLEDLNEVFEKMEEGK-IAGRV 337
>gnl|CDD|240424 PTZ00455, PTZ00455, 3-ketoacyl-CoA thiolase; Provisional.
Length = 438
Score = 29.5 bits (66), Expect = 4.4
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 104 GPMMSNTNHLGRCTIAAAQQVETDAGLFY----RFQGVALPKSIKGFIPSWMNMGLSSIE 159
G + S+ HLG + + Q L Y R +G + +W ++
Sbjct: 82 GELFSSQGHLGPAAVGSLGQSGASNALLYKPAMRVEGACASGGL-AVQSAW-----EALL 135
Query: 160 AGKSDIFLVI 169
AG SDI LV+
Sbjct: 136 AGTSDIALVV 145
>gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX
and nucleoredoxin (NRX) subfamily; TryX and NRX are
thioredoxin (TRX)-like protein disulfide oxidoreductases
that alter the redox state of target proteins via the
reversible oxidation of an active center CXXC motif.
TryX is involved in the regulation of oxidative stress
in parasitic trypanosomatids by reducing TryX
peroxidase, which in turn catalyzes the reduction of
hydrogen peroxide and organic hydroperoxides. TryX
derives reducing equivalents from reduced trypanothione,
a polyamine peptide conjugate unique to trypanosomatids,
which is regenerated by the NADPH-dependent flavoprotein
trypanothione reductase. Vertebrate NRX is a 400-amino
acid nuclear protein with one redox active TRX domain
containing a CPPC active site motif followed by one
redox inactive TRX-like domain. Mouse NRX transcripts
are expressed in all adult tissues but is restricted to
the nervous system and limb buds in embryos. Plant NRX,
longer than the vertebrate NRX by about 100-200 amino
acids, is a nuclear protein containing a redox inactive
TRX-like domain between two redox active TRX domains.
Both vertebrate and plant NRXs show thiol oxidoreductase
activity in vitro. Their localization in the nucleus
suggests a role in the redox regulation of nuclear
proteins such as transcription factors.
Length = 131
Score = 28.0 bits (63), Expect = 5.4
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 51 AVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVI 91
AVPF L +K+E IP+++ DG+V+
Sbjct: 79 AVPFSDRERRSRLNR------TFKIEGIPTLIILDADGEVV 113
Score = 28.0 bits (63), Expect = 5.4
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 350 AVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVI 390
AVPF L +K+E IP+++ DG+V+
Sbjct: 79 AVPFSDRERRSRLNR------TFKIEGIPTLIILDADGEVV 113
>gnl|CDD|151039 pfam10473, Cenp-F_leu_zip, Leucine-rich repeats of kinetochore
protein Cenp-F/LEK1. Cenp-F, a centromeric kinetochore,
microtubule-binding protein consisting of two
1,600-amino acid-long coils, is essential for the full
functioning of the mitotic checkpoint pathway. There are
several leucine-rich repeats along the sequence of LEK1
that are considered to be zippers, though they do not
appear to be binding DNA directly in this instance.
Length = 140
Score = 28.2 bits (63), Expect = 5.7
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 179 VQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAE 215
V+ + + K+ + +Q V +EK+N + + L E+ E
Sbjct: 78 VRSEKENLTKQLQEKQERVSELEKLNSSTENLLEEKE 114
>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 127
Score = 27.7 bits (62), Expect = 6.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 161 GKSDIFLVIRLGQISSNIVQKQNDI 185
GKSD++ + RL +S +I ++I
Sbjct: 75 GKSDLYFICRLKPLSFDINFDTSEI 99
>gnl|CDD|176522 cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase
domain of uncharacterized bacterial protein Rv2277c and
similar proteins. This subfamily corresponds to the
glycerophosphodiester phosphodiesterase domain (GDPD)
present in uncharacterized bacterial protein Rv2277c and
similar proteins. Members in this subfamily are
bacterial homologous of mammalian GDE4, a transmembrane
protein whose cellular function has not yet been
elucidated.
Length = 263
Score = 28.1 bits (63), Expect = 9.1
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 17/68 (25%)
Query: 82 VQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRC---------TIAAAQQVETDAGLFY 132
VQ S DG ++YR D + S TN G T+ A + + G Y
Sbjct: 36 VQLSKDGVPVLYRPSD--------LKSLTNGSGAVSAYTAAQLATLNAGYNFKPEGGYPY 87
Query: 133 RFQGVALP 140
R + V +P
Sbjct: 88 RGKPVGIP 95
>gnl|CDD|213679 TIGR02034, CysN, sulfate adenylyltransferase, large subunit.
Metabolic assimilation of sulfur from inorganic sulfate,
requires sulfate activation by coupling to a nucleoside,
for the production of high-energy nucleoside
phosphosulfates. This pathway appears to be similar in
all prokaryotic organisms. Activation is first achieved
through sulfation of sulfate with ATP by sulfate
adenylyltransferase (ATP sulfurylase) to produce
5'-phosphosulfate (APS), coupled by GTP hydrolysis.
Subsequently, APS is phosphorylated by an APS kinase to
produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS). In
Escherichia coli, ATP sulfurylase is a heterodimer
composed of two subunits encoded by cysD and cysN, with
APS kinase encoded by cysC. These genes are located in a
unidirectionally transcribed gene cluster, and have been
shown to be required for the synthesis of
sulfur-containing amino acids. Homologous to this E.coli
activation pathway are nodPQH gene products found among
members of the Rhizobiaceae family. These gene products
have been shown to exhibit ATP sulfurase and APS kinase
activity, yet are involved in Nod factor sulfation, and
sulfation of other macromolecules. With members of the
Rhizobiaceae family, nodQ often appears as a fusion of
cysN (large subunit of ATP sulfurase) and cysC (APS
kinase) [Central intermediary metabolism, Sulfur
metabolism].
Length = 406
Score = 28.5 bits (64), Expect = 9.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 82 VQQSIDGKVIVYRIKDHIDISRGPMMSN 109
++Q+ G+ + + D IDISRG +++
Sbjct: 271 LEQARAGQAVTLTLDDEIDISRGDLLAA 298
Score = 28.5 bits (64), Expect = 9.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 381 VQQSIDGKVIVYRIKDHIDISRGPMMSN 408
++Q+ G+ + + D IDISRG +++
Sbjct: 271 LEQARAGQAVTLTLDDEIDISRGDLLAA 298
>gnl|CDD|225448 COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1
[Inorganic ion transport and metabolism].
Length = 431
Score = 28.4 bits (64), Expect = 9.9
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 82 VQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETD 127
+ Q+ G+ + + D IDISRG ++ + A A + D
Sbjct: 277 LAQASAGEAVTLVLADEIDISRGDLIVAADA----PPAVADAFDAD 318
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.393
Gapped
Lambda K H
0.267 0.0666 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,858,631
Number of extensions: 2203826
Number of successful extensions: 1748
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1732
Number of HSP's successfully gapped: 37
Length of query: 458
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 358
Effective length of database: 6,502,202
Effective search space: 2327788316
Effective search space used: 2327788316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.4 bits)