RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12008
(458 letters)
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 89.2 bits (222), Expect = 4e-19
Identities = 50/214 (23%), Positives = 100/214 (46%), Gaps = 23/214 (10%)
Query: 201 EKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESD 260
E+IN+ P+ + +K +T + AQ +S L ++V +G +L D+ +PLE+D
Sbjct: 2 EQINIQ---FPDGNKKAFDKG-TTTEDIAQSISPGLRKKAVAGKFNG-QLVDLTKPLETD 56
Query: 261 CELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYD 320
++++ + + S + ++ + + + V+ P ++ G F YD
Sbjct: 57 GSIEIVTPGSEE---ALEVLRHSTAHLMAHAIKRLYGN---VKFGVGPV--IEGG-FYYD 107
Query: 321 VQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPS 379
D + +S + + M ++ E + ER +S+D A+ LF +++YKLE I +
Sbjct: 108 F-----DIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDA 162
Query: 380 IVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLG 413
I + D V +Y D D+ RG + +T +
Sbjct: 163 IPE---DENVTLYSQGDFTDLCRGVHVPSTAKIK 193
Score = 64.1 bits (157), Expect = 4e-11
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 18 FVYDVQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLE 76
F YD D + +S + + M ++ E + ER +S+D A+ LF +++YKLE
Sbjct: 104 FYYDF-----DIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLE 158
Query: 77 QIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLG 114
I +I + D V +Y D D+ RG + +T +
Sbjct: 159 LIDAIPE---DENVTLYSQGDFTDLCRGVHVPSTAKIK 193
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati
translational regulation, protein/RNA, ligase-RNA
complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 78.7 bits (195), Expect = 8e-16
Identities = 45/202 (22%), Positives = 82/202 (40%), Gaps = 36/202 (17%)
Query: 223 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 282
+P + A + L + ++G +L D +E+D +L ++ D +
Sbjct: 18 VSPMDVALDIGPGLAKACIAGRVNG-ELVDACDLIENDAQLSIITAKDEEGLE---IIRH 73
Query: 283 SCSIMLGSVLSNAFKDNVEVQLHSFPS------PNVKSGSFVYDVQLSGVDNWKPTSAE- 335
SC+ +L +A K QL +P P + +G F YDV D + + E
Sbjct: 74 SCA----HLLGHAIK-----QL--WPHTKMAIGPVIDNG-FYYDV-----DLDRTLTQED 116
Query: 336 LRVLSAEMVKLAYEAVPFERLSISQDLAEALFE--HNKYKLEQIPSIVQQSI--DGKVIV 391
+ L M +LA + + +S A F YK+ I+ ++I D K +
Sbjct: 117 VEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVS----ILDENIAHDDKPGL 172
Query: 392 YRIKDHIDISRGPMMSNTNHLG 413
Y ++++D+ RGP + N
Sbjct: 173 YFHEEYVDMCRGPHVPNMRFCH 194
Score = 53.7 bits (130), Expect = 7e-08
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Query: 18 FVYDVQLSGVDNWKPTSAE-LRVLSAEMVKLAYEAVPFERLSISQDLAEALFE--HNKYK 74
F YDV D + + E + L M +LA + + +S A F YK
Sbjct: 102 FYYDV-----DLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYK 156
Query: 75 LEQIPSIVQQSI--DGKVIVYRIKDHIDISRGPMMSNTNHLG 114
+ I+ ++I D K +Y ++++D+ RGP + N
Sbjct: 157 VS----ILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCH 194
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP:
d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Length = 224
Score = 71.7 bits (177), Expect = 1e-14
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 36/201 (17%)
Query: 224 TPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRS 283
+P + A + L + ++G +L D +E+D +L ++ D + S
Sbjct: 19 SPMDVALDIGPGLAKACIAGRVNG-ELVDACDLIENDAQLSIITAKDEEGLE---IIRHS 74
Query: 284 CSIMLGSVLSNAFKDNVEVQLHSFPS------PNVKSGSFVYDVQLSGVDNWKP-TSAEL 336
C+ +L +A K QL +P P + +G F YD VD + T ++
Sbjct: 75 CA----HLLGHAIK-----QL--WPHTKMAIGPVIDNG-FYYD-----VDLDRTLTQEDV 117
Query: 337 RVLSAEMVKLAYEAVPFERLSISQDLAEALFEHN--KYKLEQIPSIVQQSI--DGKVIVY 392
L M +LA + + +S A F + YK+ I+ ++I D K +Y
Sbjct: 118 EALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVS----ILDENIAHDDKPGLY 173
Query: 393 RIKDHIDISRGPMMSNTNHLG 413
++++D+ RGP + N
Sbjct: 174 FHEEYVDMCRGPHVPNMRFCH 194
Score = 50.9 bits (123), Expect = 2e-07
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 14/102 (13%)
Query: 18 FVYDVQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHN--KYK 74
F YDV D + T ++ L M +LA + + +S A F + YK
Sbjct: 102 FYYDV-----DLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYK 156
Query: 75 LEQIPSIVQQSI--DGKVIVYRIKDHIDISRGPMMSNTNHLG 114
+ I+ ++I D K +Y ++++D+ RGP + N
Sbjct: 157 VS----ILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCH 194
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, ligase; NMR {Homo sapiens}
Length = 88
Score = 57.2 bits (139), Expect = 1e-10
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 201 EKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESD 260
+ I VT LP+ ++ +TPY A +S+ L D +V+A ++ +WD+ RPLE D
Sbjct: 10 KPIKVT---LPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNN-VVWDLDRPLEED 65
Query: 261 CELQLLHFYDSDPYHSNRTFWRSCS 285
C L+LL F D + + + S
Sbjct: 66 CTLELLKFEDEE---AQAVYSGPSS 87
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 7e-07
Identities = 81/468 (17%), Positives = 134/468 (28%), Gaps = 194/468 (41%)
Query: 36 ELRVL---SAEMVK--LAYEAVPFERLSISQDLAEALFEH---------------NKYKL 75
ELR L +V + + A L + AE +F +K L
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 76 EQIP---------SIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAA--QQV 124
IP + + K++ + + +G T H + + A +
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG----ATGH-SQGLVTAVAIAET 286
Query: 125 ETDAG-----------LFY---RFQGV----ALPKSI--------KGFIPSWMNMGLSSI 158
++ LF+ R +LP SI +G +PS M
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG-VPSPM------- 338
Query: 159 EAGKSDIFLVIRLGQISSNIVQKQNDIFNKEFKRQQNAVGRIEKIN------VTYKGLPE 212
L I ++ VQ + N + I +N V+ G P+
Sbjct: 339 --------LSIS-N-LTQEQVQDYVNKTNSHLPAGKQV--EISLVNGAKNLVVS--GPPQ 384
Query: 213 DAELI-MNKNL---STPYNCAQH---MSEMLCDRSVLALIDGVKLWDMHR--PLESDCEL 263
L +N L P Q SE R KL +R P+
Sbjct: 385 S--LYGLNLTLRKAKAPSGLDQSRIPFSE----R---------KLKFSNRFLPV------ 423
Query: 264 QLLHFYDSDPYHSNRTFWRSCSIMLGS---VLSNAFKDNVEVQLHSFPSPNVKSGSFVYD 320
+ P+HS +++ + + + K+NV P VYD
Sbjct: 424 -------ASPFHS--------HLLVPASDLINKDLVKNNVSFNAKDIQIP-------VYD 461
Query: 321 VQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQI--P 378
G D LRVLS SIS+ + + + +
Sbjct: 462 TF-DGSD--------LRVLSG---------------SISERIVDCIIR------LPVKWE 491
Query: 379 SIVQQS----ID---GKV-----IVYRIKD----HIDISRGPMMSNTN 410
+ Q +D G + +R KD + I G + N +
Sbjct: 492 TTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRV-IVAGTLDINPD 538
Score = 38.5 bits (89), Expect = 0.006
Identities = 74/489 (15%), Positives = 153/489 (31%), Gaps = 178/489 (36%)
Query: 11 VSLKSGSFVYDVQLSGVDNWKPTS-----AELR-----VLSAEMVKLAYEAVPFERLSIS 60
++L GS + + + PT+ ++L+ +L A + P +
Sbjct: 9 LTLSHGSLEHVLLV-------PTASFFIASQLQEQFNKILPEPTEGFAADDEP----TTP 57
Query: 61 QDLAEALFEHNKYKLEQIPSIVQQSIDG------KVIVYRIKDHIDISRGPMMSNTN-HL 113
+L F L + S+V+ S G + + ++ + + H
Sbjct: 58 AELV-GKF------LGYVSSLVEPSKVGQFDQVLNLCLTEFENCY-------LEGNDIH- 102
Query: 114 GRCTIAAAQQVETDAGL---------FYRFQGVALPKSIKGFIPSWMNMGLSSIEAGKSD 164
+AA E D L + + +A + S + ++ G +
Sbjct: 103 ---ALAAKLLQENDTTLVKTKELIKNYITARIMA-KRPFDKKSNSAL---FRAVGEGNAQ 155
Query: 165 IFLVIRLGQISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLST 224
+ + GQ N +D F +E + + TY L D LI
Sbjct: 156 LVAIFG-GQ--GNT----DDYF-EE----------LRDLYQTYHVLVGD--LI------- 188
Query: 225 PYNCAQHMSEML-----CDRSVLALIDGVKLWDMHRPLES-DCE--------------LQ 264
A+ +SE++ ++ ++ + W + P + D + +Q
Sbjct: 189 -KFSAETLSELIRTTLDAEKVFTQGLN-ILEW-LENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 265 LLHFY------DSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFV 318
L H+ P + + +++
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYL-KGATGHSQGLVTAVA---------------------- 282
Query: 319 YDVQLSGVDNWKPTSAELRVLSAEMVKL-------AYEAVPFERLSISQDLAEALFEHNK 371
++ D+W V + + + YEA P S+ + E E+N
Sbjct: 283 ----IAETDSW----ESFFVSVRKAITVLFFIGVRCYEAYP--NTSLPPSILEDSLENN- 331
Query: 372 YKLEQIPS-IVQQSIDGKVIVYRIKDHIDISRGPMMSNTN-HL---GRCTIAAV-SFR-F 424
E +PS ++ SI + +++D+++ TN HL + I+ V +
Sbjct: 332 ---EGVPSPML--SISN-LTQEQVQDYVN--------KTNSHLPAGKQVEISLVNGAKNL 377
Query: 425 FLS-PPSCL 432
+S PP L
Sbjct: 378 VVSGPPQSL 386
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 4e-05
Identities = 52/384 (13%), Positives = 123/384 (32%), Gaps = 96/384 (25%)
Query: 61 QDLAEALFEHNKYKLE--QIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTI 118
+D+ + + + + + + + I DHI I +S T L
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI-----DHI-IMSKDAVSGTLRL--FWT 70
Query: 119 AAAQQVETDAGLFYRFQGVALPKSIKGFIPSWMNMGLSSIEAGKSDIFLVIRLGQISSNI 178
++Q E +F L + K ++ +S I+ + ++ R+ +
Sbjct: 71 LLSKQEEM----VQKFVEEVLRINYK-----FL---MSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 179 VQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEML-C 237
+ N +F K V R++ + L EL KN+ +L
Sbjct: 119 LYNDNQVFAKYN------VSRLQPYLKLRQAL---LELRPAKNVLI------D--GVLGS 161
Query: 238 DRSVLALI------------DGV----------------KLWDMHRPLESDCELQLLHFY 269
++ +AL + L + ++ +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT-SRSDHS 220
Query: 270 DSDPYHSN------RTFWRS-----CSIMLGSVLS----NAFKDNVEVQLHSFPSPNVKS 314
+ + R +S C ++L +V + NAF + ++ L +
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 315 GSFVYDVQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSIS----QDLAEALFEH 369
S +S + T E++ L + + + +P E L+ + +AE++ +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 370 N-------KYKLEQIPSIVQQSID 386
+++ +I++ S++
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLN 364
Score = 40.6 bits (94), Expect = 0.001
Identities = 56/347 (16%), Positives = 113/347 (32%), Gaps = 100/347 (28%)
Query: 22 VQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPS 80
+S + T E++ L + + + +P E L+ + P
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN------------------PR 328
Query: 81 IVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYRFQGVA-L 139
+ +I I+D + N + L I ++ V A F ++
Sbjct: 329 RL------SIIAESIRDGLATWDNWKHVNCDKLTT-IIESSLNVLEPAEYRKMFDRLSVF 381
Query: 140 PKSIKGFIPS------WMNMGLSSIEAGKSDIFLVIRLGQISSNIVQKQN--------DI 185
P S IP+ W ++ KSD+ +V+ S +V+KQ I
Sbjct: 382 PPSAH--IPTILLSLIWFDV-------IKSDVMVVVNKLHKYS-LVEKQPKESTISIPSI 431
Query: 186 FNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYN-------CAQHMSEM-LC 237
+ E K + + + V + +P+ + + +L PY H+ +
Sbjct: 432 Y-LELKVKLENEYALHRSIVDHYNIPKTFD---SDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 238 DRSVL---ALID----GVKL------WDMHRPLESDCELQLLHFY-----DSDPYHSNRT 279
+R L +D K+ W+ + + LQ L FY D+DP +
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT--LQQLKFYKPYICDNDPKYER-- 543
Query: 280 FWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV------KSGSFVYD 320
++ ++L F +E L ++ +++
Sbjct: 544 -------LVNAILD--FLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Score = 36.4 bits (83), Expect = 0.025
Identities = 51/407 (12%), Positives = 109/407 (26%), Gaps = 123/407 (30%)
Query: 53 PFERLSISQDLAEALFEHNKYK-----LEQI--PSIVQQSIDG--KVIVYRIKDHIDISR 103
R+ Q L + Y+ L + + + K+++ +R
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-AFNLSCKILL--------TTR 273
Query: 104 GPMMSNTNHLGRCTIAAAQQVETDAG--------LFYRFQGVA---LPKSIKGFIPSWMN 152
T+ L T L ++ LP+ + P
Sbjct: 274 F--KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP---- 327
Query: 153 MGLSSIEAGKSDIFLVIRLGQISSNIVQKQNDIFNKEFKRQQNAVGR-------I--EKI 203
LS I D + K I + A R +
Sbjct: 328 RRLSIIAESIRD--GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 204 NVTYKGL--------PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLAL--------IDG 247
++ L D +++NK L S++ I
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNK---------------LHKYSLVEKQPKESTISIPS 430
Query: 248 VKLWDMHRPLESDCEL--QLLHFYD----------SDPYHSNRTFWRSCSIMLGSVLSNA 295
+ L ++ LE++ L ++ Y+ PY + +G L N
Sbjct: 431 IYL-ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-----HIGHHLKNI 484
Query: 296 FKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFER 355
++ E ++ F V+ +D R L K+ +++ +
Sbjct: 485 --EHPE-RMTLFRM--------VF------LD--------FRFLEQ---KIRHDSTAWNA 516
Query: 356 LSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISR 402
+ + L + Y + P + + +I++++ S+
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase,
allosteric enzyme, binding, glycolysis, magnesium,
metal-binding, NUCL binding; 2.00A {Leishmania mexicana}
PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A*
3qv6_A* 3qv7_D* 3qv8_D* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Length = 499
Score = 29.1 bits (66), Expect = 3.1
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
Query: 169 IRLGQISSNIVQ-KQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAE 215
IR GQ ++ G +K + Y+ L +
Sbjct: 90 IRTGQFVGGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVR 137
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 3.2
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 158 IEAGKSDI--FLVIRLGQISSNIVQKQNDIFNKEFKRQQNA 196
E K D+ + + Q+ N + N I +K F +Q +A
Sbjct: 113 REKAKKDLEEWNQRQSEQVEKN--KINNRIADKAFYQQPDA 151
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE
consortium, SGC, transferase; 2.70A {Plasmodium
falciparum 3D7}
Length = 520
Score = 28.7 bits (65), Expect = 5.2
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 169 IRLGQISSNIVQ-KQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAE 215
IR G + + V K+ +G I +YK LP+ +
Sbjct: 117 IRTGFLKNKEVHLKEGSKLK--LVTDYEFLGDETCIACSYKKLPQSVK 162
>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_V
Length = 130
Score = 27.3 bits (60), Expect = 5.6
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 68 FEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPM 106
F NK L ++ + + + K+ + I +GP+
Sbjct: 28 FHFNKKILSEVAQVPSKRLRNKIAGFATHLMKRIQKGPV 66
Score = 27.3 bits (60), Expect = 5.6
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 367 FEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPM 405
F NK L ++ + + + K+ + I +GP+
Sbjct: 28 FHFNKKILSEVAQVPSKRLRNKIAGFATHLMKRIQKGPV 66
>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R
Length = 136
Score = 27.4 bits (60), Expect = 6.2
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 68 FEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPM 106
F+ NK ++I +I + + K+ Y I +GP+
Sbjct: 28 FQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPV 66
Score = 27.4 bits (60), Expect = 6.2
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 367 FEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPM 405
F+ NK ++I +I + + K+ Y I +GP+
Sbjct: 28 FQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPV 66
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent
acyltransferase, CAT-like, alpha and beta (2 L mixed
beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP:
c.43.1.1 PDB: 1e2o_A 1c4t_A
Length = 233
Score = 27.6 bits (62), Expect = 7.6
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 75 LEQIPSIVQQSIDGKVIVYRIKDHIDIS 102
L++ P V SIDG +VY ++ D+S
Sbjct: 74 LKRYP-EVNASIDGDDVVY--HNYFDVS 98
Score = 27.6 bits (62), Expect = 7.6
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 374 LEQIPSIVQQSIDGKVIVYRIKDHIDIS 401
L++ P V SIDG +VY ++ D+S
Sbjct: 74 LKRYP-EVNASIDGDDVVY--HNYFDVS 98
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 28.0 bits (63), Expect = 7.8
Identities = 9/46 (19%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 82 VQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETD 127
++Q+ G+ + ++D IDISRG ++ + +++ + +
Sbjct: 297 LEQAGPGQAVTLTMEDEIDISRGDLLVHADNV----PQVSDAFDAM 338
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 27.6 bits (62), Expect = 8.2
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 195 NAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEML 236
A G N + + + +++ NL + + A +++L
Sbjct: 93 CAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLL 134
>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 141
Score = 26.9 bits (59), Expect = 9.3
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 68 FEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPM 106
F NK LE++ + + + KV + I RGP+
Sbjct: 28 FHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPV 66
Score = 26.9 bits (59), Expect = 9.3
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 367 FEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPM 405
F NK LE++ + + + KV + I RGP+
Sbjct: 28 FHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPV 66
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase,
magnesium, transferase, structural genomi structural
genomics consortium; HET: CIT; 2.64A {Cryptosporidium
parvum}
Length = 534
Score = 27.6 bits (62), Expect = 9.9
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 169 IRLGQI--SSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAE 215
IR G + I K + + +G E I+ +Y LP+ +
Sbjct: 123 IRTGMLEGGKPIELKAGQTL--KITTDYSMLGNSECISCSYSLLPKSVQ 169
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.393
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,925,083
Number of extensions: 410411
Number of successful extensions: 813
Number of sequences better than 10.0: 1
Number of HSP's gapped: 797
Number of HSP's successfully gapped: 43
Length of query: 458
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 361
Effective length of database: 3,993,456
Effective search space: 1441637616
Effective search space used: 1441637616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.0 bits)