RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12008
(458 letters)
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Staphylococcus aureus
[TaxId: 1280]}
Length = 179
Score = 63.2 bits (153), Expect = 2e-12
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 29 NWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDG 88
+ +S + + M ++ E + ER +S+D A+ LF +++YKLE I +I + D
Sbjct: 49 DQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPE---DE 105
Query: 89 KVIVYRIKDHIDISRGPMMSNTNHLG--RCTIAAAQQVETDAG--LFYRFQGVALPKSIK 144
V +Y D D+ RG + +T + + A D+ + R G A +
Sbjct: 106 NVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKE 165
Score = 61.3 bits (148), Expect = 9e-12
Identities = 26/149 (17%), Positives = 57/149 (38%), Gaps = 13/149 (8%)
Query: 278 RTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELR 337
S + ++ + + + F + +S +
Sbjct: 9 EVLRHSTAHLMAHAIKRLYGN--VKFGVGPVIEGGFYYDFDI--------DQNISSDDFE 58
Query: 338 VLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDH 397
+ M ++ E + ER +S+D A+ LF +++YKLE I +I + D V +Y D
Sbjct: 59 QIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPE---DENVTLYSQGDF 115
Query: 398 IDISRGPMMSNTNHLGRCTIAAVSFRFFL 426
D+ RG + +T + + + + ++
Sbjct: 116 TDLCRGVHVPSTAKIKEFKLLSTAGAYWR 144
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Escherichia coli [TaxId:
562]}
Length = 162
Score = 42.1 bits (98), Expect = 3e-05
Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 10/144 (6%)
Query: 278 RTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELR 337
SC+ +LG + + ++ P + D+ T ++
Sbjct: 7 EIIRHSCAHLLGHAIKQLWPH---TKMAIGPV-IDNGFYYDVDLD------RTLTQEDVE 56
Query: 338 VLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDH 397
L M +LA + + +S A F + + + D K +Y +++
Sbjct: 57 ALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEY 116
Query: 398 IDISRGPMMSNTNHLGRCTIAAVS 421
+D+ RGP + N + +
Sbjct: 117 VDMCRGPHVPNMRFCHHFKLMKTA 140
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS),
N-terminal 'additional' domain {Staphylococcus aureus
[TaxId: 1280]}
Length = 59
Score = 38.9 bits (91), Expect = 5e-05
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 203 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 262
IN+ P+ + +K +T + AQ +S L ++V +G +L D+ +PLE+D
Sbjct: 1 INIQ---FPDGNKKAFDKG-TTTEDIAQSISPGLRKKAVAGKFNG-QLVDLTKPLETDGS 55
Query: 263 LQLL 266
++++
Sbjct: 56 IEIV 59
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS),
N-terminal 'additional' domain {Escherichia coli [TaxId:
562]}
Length = 62
Score = 35.1 bits (81), Expect = 0.001
Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 203 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 262
+T LP+ ++ + +P + A + L + ++G +L D +E+D +
Sbjct: 2 PVIT---LPDGSQRHYDHA-VSPMDVALDIGPGLAKACIAGRVNG-ELVDACDLIENDAQ 56
Query: 263 LQLL 266
L ++
Sbjct: 57 LSII 60
>d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 92
Score = 26.1 bits (57), Expect = 3.4
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 82 VQQSIDGKVIVYRIKDHIDISRGPMMSNTNHL 113
++Q+ G+ + ++D IDISRG ++ + +++
Sbjct: 60 LEQAGPGQAVTLTMEDEIDISRGDLLVHADNV 91
Score = 26.1 bits (57), Expect = 3.4
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 381 VQQSIDGKVIVYRIKDHIDISRGPMMSNTNHL 412
++Q+ G+ + ++D IDISRG ++ + +++
Sbjct: 60 LEQAGPGQAVTLTMEDEIDISRGDLLVHADNV 91
>d1pkla1 b.58.1.1 (A:88-186) Pyruvate kinase (PK) {Leishmania
mexicana [TaxId: 5665]}
Length = 99
Score = 25.6 bits (56), Expect = 5.4
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
Query: 169 IRLGQISSNIVQ-KQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAE 215
IR GQ ++ G +K + Y+ L +
Sbjct: 2 IRTGQFVGGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVR 49
>d1ggxa_ d.22.1.1 (A:) Red fluorescent protein (fp583 or
dsred(clontech)) {Coral (Discosoma sp.) [TaxId: 86600]}
Length = 219
Score = 26.2 bits (58), Expect = 6.9
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 1 MIFKND----VRGKVSLKSGSFVYDVQLSGVD 28
M F++ V SL+ G F+Y V+ GV+
Sbjct: 91 MNFEDGGVVTVTQDSSLQDGCFIYKVKFIGVN 122
>d1iwea_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 430
Score = 26.2 bits (57), Expect = 9.9
Identities = 7/72 (9%), Positives = 15/72 (20%), Gaps = 11/72 (15%)
Query: 68 FEHNKYKLEQIPS-IVQQS----------IDGKVIVYRIKDHIDISRGPMMSNTNHLGRC 116
+ +Y +PS I+ I + + + R
Sbjct: 48 VDGKEYDFHLLPSGIINTKAVSFIGNGVVIHLPGLFEEAEKNEKKGLKDWEKRLIISDRA 107
Query: 117 TIAAAQQVETDA 128
+ D
Sbjct: 108 HLVFDFHQAVDG 119
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.393
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,679,744
Number of extensions: 76353
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 15
Length of query: 458
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 370
Effective length of database: 1,199,356
Effective search space: 443761720
Effective search space used: 443761720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)