Query psy1201
Match_columns 179
No_of_seqs 111 out of 556
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 16:22:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00939 2a57 Equilibrative N 100.0 1.8E-46 3.9E-51 333.4 19.0 171 5-179 265-435 (437)
2 PF01733 Nucleoside_tran: Nucl 100.0 1.2E-48 2.6E-53 332.6 0.4 169 5-176 139-308 (309)
3 KOG1479|consensus 100.0 2.5E-40 5.5E-45 289.4 11.9 165 4-178 241-405 (406)
4 PF02487 CLN3: CLN3 protein; 98.4 6.1E-06 1.3E-10 73.3 12.9 159 4-177 238-396 (402)
5 TIGR00891 2A0112 putative sial 95.7 0.27 5.9E-06 41.5 12.2 149 3-174 9-158 (405)
6 TIGR00900 2A0121 H+ Antiporter 95.7 0.29 6.3E-06 40.5 12.1 111 56-174 39-150 (365)
7 TIGR00880 2_A_01_02 Multidrug 95.5 0.16 3.4E-06 35.8 8.8 59 115-173 50-108 (141)
8 cd06174 MFS The Major Facilita 95.5 0.08 1.7E-06 43.3 8.2 108 55-175 38-146 (352)
9 PRK11646 multidrug resistance 95.3 0.19 4.1E-06 43.8 10.1 141 12-172 13-155 (400)
10 COG2814 AraJ Arabinose efflux 95.1 0.32 6.9E-06 43.4 11.0 106 52-172 249-355 (394)
11 TIGR00893 2A0114 d-galactonate 95.1 0.23 5.1E-06 41.1 9.8 106 55-173 33-139 (399)
12 TIGR00710 efflux_Bcr_CflA drug 95.0 0.37 8E-06 40.5 10.7 104 56-172 45-149 (385)
13 PRK12382 putative transporter; 94.9 0.31 6.6E-06 41.7 10.2 153 10-173 16-169 (392)
14 PRK05122 major facilitator sup 94.5 0.33 7.2E-06 41.6 9.3 153 9-172 15-168 (399)
15 TIGR00898 2A0119 cation transp 94.4 0.67 1.4E-05 41.1 11.5 108 55-175 131-239 (505)
16 PRK10213 nepI ribonucleoside t 94.3 0.94 2E-05 39.3 12.0 105 56-173 60-165 (394)
17 PRK10054 putative transporter; 94.2 0.7 1.5E-05 40.1 10.9 148 9-175 7-155 (395)
18 TIGR00895 2A0115 benzoate tran 94.2 0.8 1.7E-05 38.3 10.9 104 56-172 57-161 (398)
19 cd06174 MFS The Major Facilita 93.9 0.66 1.4E-05 37.9 9.6 106 55-172 215-321 (352)
20 PF07690 MFS_1: Major Facilita 93.8 0.74 1.6E-05 37.9 9.8 106 56-174 37-143 (352)
21 TIGR00887 2A0109 phosphate:H+ 93.7 1 2.3E-05 40.3 11.2 114 55-175 60-174 (502)
22 PRK08633 2-acyl-glycerophospho 93.5 0.71 1.5E-05 45.2 10.6 110 55-174 51-161 (1146)
23 TIGR00900 2A0121 H+ Antiporter 93.4 1.3 2.7E-05 36.6 10.6 106 56-172 252-357 (365)
24 TIGR00895 2A0115 benzoate tran 93.3 1.9 4.1E-05 36.0 11.7 104 55-171 289-393 (398)
25 TIGR00711 efflux_EmrB drug res 93.2 1.1 2.4E-05 39.2 10.3 108 56-172 296-404 (485)
26 PRK10489 enterobactin exporter 93.1 1.6 3.5E-05 37.7 11.3 105 56-172 264-368 (417)
27 TIGR00886 2A0108 nitrite extru 93.1 1.3 2.8E-05 37.1 10.3 103 56-172 42-146 (366)
28 TIGR00892 2A0113 monocarboxyla 93.1 0.72 1.6E-05 40.9 9.1 108 56-172 281-389 (455)
29 PRK05122 major facilitator sup 93.0 2.1 4.6E-05 36.6 11.7 102 56-170 254-356 (399)
30 PRK12382 putative transporter; 92.8 1.4 3E-05 37.7 10.3 104 56-172 254-358 (392)
31 PRK11102 bicyclomycin/multidru 92.6 2.5 5.4E-05 35.6 11.5 104 56-172 31-135 (377)
32 PRK14995 methyl viologen resis 92.1 2.2 4.8E-05 38.2 11.1 58 115-172 350-407 (495)
33 PRK09874 drug efflux system pr 92.1 3.5 7.6E-05 35.0 11.8 103 56-172 59-162 (408)
34 PRK10473 multidrug efflux syst 92.0 2.7 5.8E-05 35.9 11.1 105 55-172 42-147 (392)
35 TIGR02332 HpaX 4-hydroxyphenyl 92.0 1.6 3.5E-05 38.0 9.8 105 56-173 48-153 (412)
36 PRK11551 putative 3-hydroxyphe 91.9 2.3 5E-05 36.4 10.5 105 56-172 260-364 (406)
37 PF07690 MFS_1: Major Facilita 91.9 1.1 2.4E-05 36.8 8.3 55 114-168 297-351 (352)
38 TIGR00881 2A0104 phosphoglycer 91.8 0.46 9.9E-06 39.4 5.9 101 56-169 35-136 (379)
39 KOG2504|consensus 91.7 0.87 1.9E-05 41.8 8.0 99 56-165 338-437 (509)
40 TIGR00881 2A0104 phosphoglycer 91.7 1.3 2.8E-05 36.7 8.5 109 55-171 256-365 (379)
41 TIGR00711 efflux_EmrB drug res 91.6 1.9 4.1E-05 37.7 9.8 104 56-172 42-146 (485)
42 PRK10091 MFS transport protein 91.6 3.2 6.9E-05 35.5 11.1 101 56-169 43-144 (382)
43 TIGR00890 2A0111 Oxalate/Forma 91.5 1.4 3E-05 36.5 8.5 105 56-171 245-350 (377)
44 PRK11551 putative 3-hydroxyphe 91.5 4.6 9.9E-05 34.5 11.9 104 56-172 55-159 (406)
45 PRK10489 enterobactin exporter 91.5 1.6 3.4E-05 37.8 9.1 56 117-172 111-166 (417)
46 KOG0569|consensus 91.1 2.6 5.6E-05 38.7 10.4 104 56-173 65-173 (485)
47 KOG3880|consensus 91.1 1 2.2E-05 39.6 7.3 107 58-177 295-403 (409)
48 PRK12307 putative sialic acid 91.0 4.8 0.0001 34.6 11.7 103 56-171 58-161 (426)
49 TIGR00898 2A0119 cation transp 91.0 8.3 0.00018 34.1 13.4 107 56-172 360-466 (505)
50 PRK15402 multidrug efflux syst 90.8 4 8.6E-05 35.1 10.9 103 56-171 53-156 (406)
51 TIGR00902 2A0127 phenyl propri 90.8 4.7 0.0001 34.6 11.3 100 56-172 245-349 (382)
52 TIGR00893 2A0114 d-galactonate 90.7 2.5 5.3E-05 34.9 9.3 56 115-171 311-366 (399)
53 PRK10213 nepI ribonucleoside t 90.7 3.2 6.9E-05 36.0 10.3 104 56-172 257-360 (394)
54 PRK03699 putative transporter; 90.5 2.9 6.3E-05 36.0 9.8 96 56-164 47-143 (394)
55 PRK03545 putative arabinose tr 90.4 4.3 9.3E-05 34.7 10.7 104 56-172 246-349 (390)
56 TIGR00894 2A0114euk Na(+)-depe 90.3 11 0.00023 33.2 13.4 107 55-172 80-187 (465)
57 PRK08633 2-acyl-glycerophospho 90.2 2.8 6.2E-05 41.1 10.5 107 55-173 273-379 (1146)
58 PRK03699 putative transporter; 90.1 3 6.4E-05 35.9 9.6 100 57-170 247-347 (394)
59 TIGR00901 2A0125 AmpG-related 90.0 4.7 0.0001 33.8 10.6 59 117-175 84-142 (356)
60 TIGR00879 SP MFS transporter, 89.9 4.3 9.3E-05 34.6 10.3 108 55-172 75-183 (481)
61 TIGR00897 2A0118 polyol permea 89.6 4.5 9.7E-05 34.9 10.3 108 56-172 53-162 (402)
62 TIGR00889 2A0110 nucleoside tr 89.3 4.5 9.7E-05 35.5 10.2 109 55-172 255-365 (418)
63 TIGR00710 efflux_Bcr_CflA drug 89.2 7 0.00015 32.7 11.0 109 56-172 247-356 (385)
64 PRK06814 acylglycerophosphoeth 88.9 4.2 9.1E-05 40.2 10.6 61 114-174 106-166 (1140)
65 PRK11652 emrD multidrug resist 88.6 10 0.00022 32.3 11.7 103 56-171 48-151 (394)
66 PRK11902 ampG muropeptide tran 88.5 5.8 0.00013 34.2 10.2 55 119-173 97-151 (402)
67 PRK03545 putative arabinose tr 88.5 9.5 0.00021 32.6 11.5 59 115-173 96-154 (390)
68 TIGR01299 synapt_SV2 synaptic 88.0 6.9 0.00015 37.7 11.2 105 56-173 207-312 (742)
69 TIGR00883 2A0106 metabolite-pr 87.5 1.9 4.1E-05 35.9 6.3 104 56-168 260-365 (394)
70 PRK15403 multidrug efflux syst 87.4 11 0.00023 33.0 11.3 104 56-172 56-160 (413)
71 PRK10504 putative transporter; 87.4 5.6 0.00012 34.9 9.5 58 115-172 97-154 (471)
72 PRK03893 putative sialic acid 87.2 14 0.0003 32.5 11.9 104 56-172 60-164 (496)
73 PF05977 MFS_3: Transmembrane 87.1 9.2 0.0002 35.2 11.0 106 55-172 258-363 (524)
74 TIGR00899 2A0120 sugar efflux 86.5 9.8 0.00021 31.7 10.2 57 115-172 287-343 (375)
75 PRK11128 putative 3-phenylprop 86.0 11 0.00024 32.2 10.5 58 114-171 291-348 (382)
76 TIGR00891 2A0112 putative sial 85.8 8.9 0.00019 32.2 9.6 103 56-171 279-383 (405)
77 PRK03633 putative MFS family t 84.5 8.6 0.00019 32.8 9.1 105 55-172 45-150 (381)
78 PRK11273 glpT sn-glycerol-3-ph 84.3 18 0.0004 31.7 11.3 101 56-165 68-169 (452)
79 PF05977 MFS_3: Transmembrane 84.1 6.2 0.00013 36.4 8.4 82 80-168 74-155 (524)
80 PRK11663 regulatory protein Uh 83.9 19 0.00041 31.4 11.2 103 56-171 63-166 (434)
81 PRK15402 multidrug efflux syst 83.4 17 0.00037 31.1 10.5 57 115-172 308-364 (406)
82 PRK06814 acylglycerophosphoeth 83.4 12 0.00027 36.9 10.7 60 114-173 332-391 (1140)
83 PRK10504 putative transporter; 83.3 15 0.00032 32.2 10.2 54 119-172 356-409 (471)
84 TIGR00792 gph sugar (Glycoside 82.9 29 0.00063 29.8 11.8 110 55-171 39-155 (437)
85 PRK03633 putative MFS family t 82.9 22 0.00049 30.2 11.0 52 121-172 290-341 (381)
86 TIGR01299 synapt_SV2 synaptic 82.6 16 0.00035 35.2 10.8 103 56-172 600-704 (742)
87 TIGR00899 2A0120 sugar efflux 81.7 18 0.00038 30.2 9.8 18 56-73 38-55 (375)
88 PRK10077 xylE D-xylose transpo 81.7 25 0.00054 30.7 11.0 114 55-173 59-177 (479)
89 TIGR00897 2A0118 polyol permea 81.4 30 0.00065 29.8 11.3 106 56-172 262-370 (402)
90 TIGR00885 fucP L-fucose:H+ sym 81.3 25 0.00055 30.8 10.9 60 115-174 93-152 (410)
91 PRK11195 lysophospholipid tran 81.2 22 0.00048 30.7 10.4 53 120-172 92-144 (393)
92 PRK09669 putative symporter Ya 80.3 33 0.00072 30.0 11.4 58 115-172 318-382 (444)
93 PRK10642 proline/glycine betai 80.2 19 0.00042 32.0 10.0 18 56-73 291-308 (490)
94 TIGR00883 2A0106 metabolite-pr 79.9 17 0.00037 30.1 9.1 57 119-175 99-155 (394)
95 TIGR00896 CynX cyanate transpo 78.2 37 0.0008 28.4 10.6 19 56-74 237-255 (355)
96 KOG0255|consensus 76.8 49 0.0011 29.6 11.5 108 55-175 122-230 (521)
97 PRK09874 drug efflux system pr 76.5 17 0.00037 30.8 8.2 58 115-172 310-367 (408)
98 PRK11663 regulatory protein Uh 76.1 34 0.00075 29.8 10.2 19 56-74 284-302 (434)
99 PRK11043 putative transporter; 75.7 45 0.00098 28.4 10.7 101 56-169 46-147 (401)
100 TIGR00792 gph sugar (Glycoside 75.3 52 0.0011 28.2 12.8 57 115-171 310-373 (437)
101 TIGR00890 2A0111 Oxalate/Forma 75.2 22 0.00047 29.2 8.3 99 55-167 42-141 (377)
102 PRK15011 sugar efflux transpor 75.0 27 0.00058 30.0 9.1 55 117-172 306-360 (393)
103 TIGR00806 rfc RFC reduced fola 74.5 53 0.0012 30.5 11.1 59 115-174 114-172 (511)
104 TIGR00712 glpT glycerol-3-phos 73.2 59 0.0013 28.4 10.9 105 56-169 66-171 (438)
105 KOG2325|consensus 73.2 62 0.0013 29.9 11.2 153 8-174 33-191 (488)
106 PRK11273 glpT sn-glycerol-3-ph 73.1 33 0.00071 30.1 9.3 19 56-74 294-312 (452)
107 TIGR02718 sider_RhtX_FptX side 72.9 35 0.00075 29.1 9.2 58 115-172 302-360 (390)
108 PRK15011 sugar efflux transpor 72.8 59 0.0013 27.8 10.7 27 11-37 17-43 (393)
109 PRK11043 putative transporter; 72.4 59 0.0013 27.6 10.6 54 117-171 297-351 (401)
110 PRK10077 xylE D-xylose transpo 71.4 60 0.0013 28.3 10.6 50 122-171 369-419 (479)
111 TIGR00924 yjdL_sub1_fam amino 71.1 18 0.00039 32.4 7.3 105 55-172 52-161 (475)
112 PRK09556 uhpT sugar phosphate 70.0 20 0.00044 31.6 7.3 58 115-172 121-178 (467)
113 PF06609 TRI12: Fungal trichot 69.4 87 0.0019 29.6 11.6 103 59-172 357-461 (599)
114 PRK03893 putative sialic acid 68.3 29 0.00063 30.5 7.9 19 56-74 316-334 (496)
115 TIGR00879 SP MFS transporter, 68.3 73 0.0016 26.9 10.7 37 135-171 402-438 (481)
116 PRK10207 dipeptide/tripeptide 67.6 96 0.0021 28.0 12.7 58 115-172 378-435 (489)
117 PRK11195 lysophospholipid tran 67.5 81 0.0017 27.2 10.9 105 56-175 246-353 (393)
118 COG2814 AraJ Arabinose efflux 67.2 51 0.0011 29.5 9.1 108 56-175 53-164 (394)
119 PRK14995 methyl viologen resis 67.2 93 0.002 27.8 11.1 74 91-173 78-152 (495)
120 PRK10091 MFS transport protein 66.3 82 0.0018 26.8 11.0 20 55-74 239-258 (382)
121 PRK12307 putative sialic acid 65.1 79 0.0017 27.0 9.9 19 56-74 271-289 (426)
122 PRK11462 putative transporter; 64.5 82 0.0018 28.0 10.1 32 141-172 134-166 (460)
123 PRK09528 lacY galactoside perm 63.5 35 0.00076 29.4 7.4 56 115-170 314-370 (420)
124 PRK11010 ampG muropeptide tran 63.3 1.1E+02 0.0025 27.4 11.4 58 117-174 108-165 (491)
125 PRK11102 bicyclomycin/multidru 63.1 89 0.0019 26.1 10.1 19 56-74 235-253 (377)
126 PRK10133 L-fucose transporter; 62.6 1.1E+02 0.0024 27.0 10.7 56 117-172 118-173 (438)
127 PRK09669 putative symporter Ya 62.3 76 0.0016 27.7 9.4 32 140-171 133-165 (444)
128 KOG0254|consensus 61.9 88 0.0019 28.1 9.9 108 55-175 93-201 (513)
129 PLN00028 nitrate transmembrane 61.3 78 0.0017 28.2 9.4 53 117-170 125-177 (476)
130 PRK10642 proline/glycine betai 60.1 95 0.0021 27.6 9.7 57 119-175 121-177 (490)
131 PF03825 Nuc_H_symport: Nucleo 60.1 21 0.00046 31.5 5.5 49 124-172 309-358 (400)
132 PRK09848 glucuronide transport 59.2 1.2E+02 0.0026 26.4 13.4 56 117-172 320-382 (448)
133 PRK10406 alpha-ketoglutarate t 58.2 22 0.00047 31.0 5.2 59 117-175 125-183 (432)
134 PRK09952 shikimate transporter 58.1 52 0.0011 28.8 7.6 54 119-172 128-181 (438)
135 TIGR01301 GPH_sucrose GPH fami 57.6 1.5E+02 0.0033 27.0 12.4 58 117-174 115-174 (477)
136 TIGR00788 fbt folate/biopterin 57.3 1.2E+02 0.0025 27.2 9.8 58 117-174 352-409 (468)
137 PF05978 UNC-93: Ion channel r 56.8 89 0.0019 24.1 10.7 107 52-175 42-148 (156)
138 PRK10429 melibiose:sodium symp 55.1 1.3E+02 0.0028 26.6 9.7 24 141-164 131-155 (473)
139 TIGR00901 2A0125 AmpG-related 55.1 94 0.002 25.8 8.4 38 116-153 309-346 (356)
140 COG2271 UhpC Sugar phosphate p 54.6 48 0.001 30.2 6.7 137 9-172 252-399 (448)
141 PRK15075 citrate-proton sympor 54.3 1.5E+02 0.0032 25.8 10.8 55 120-174 121-175 (434)
142 PRK11652 emrD multidrug resist 52.8 1.4E+02 0.0031 25.2 9.5 57 115-172 298-354 (394)
143 TIGR00896 CynX cyanate transpo 52.2 1.4E+02 0.003 24.9 10.0 101 56-171 40-141 (355)
144 PRK09584 tppB putative tripept 51.4 1.9E+02 0.004 26.1 14.3 87 81-171 351-437 (500)
145 TIGR00924 yjdL_sub1_fam amino 51.4 1.8E+02 0.0039 26.0 13.3 60 114-173 379-438 (475)
146 TIGR00885 fucP L-fucose:H+ sym 50.6 1.1E+02 0.0024 26.7 8.4 31 121-151 326-356 (410)
147 PF03209 PUCC: PUCC protein; 50.6 1.9E+02 0.0042 26.0 11.3 106 56-171 249-360 (403)
148 PRK15075 citrate-proton sympor 49.5 98 0.0021 26.9 7.9 19 56-74 279-297 (434)
149 PF05968 Bacillus_PapR: Bacill 48.1 18 0.0004 22.4 2.1 19 150-168 3-21 (48)
150 PRK10133 L-fucose transporter; 48.0 1.4E+02 0.0031 26.2 8.8 42 120-162 351-392 (438)
151 TIGR00903 2A0129 major facilit 47.9 58 0.0013 28.1 6.1 60 115-175 78-137 (368)
152 PRK15034 nitrate/nitrite trans 47.2 2.2E+02 0.0049 25.9 11.5 108 56-172 75-183 (462)
153 PRK09556 uhpT sugar phosphate 46.6 2E+02 0.0044 25.2 10.4 19 56-74 299-317 (467)
154 KOG2816|consensus 46.6 1.1E+02 0.0023 27.9 7.8 54 117-173 114-169 (463)
155 TIGR01272 gluP glucose/galacto 46.4 1.8E+02 0.0038 24.4 9.7 33 120-152 234-266 (310)
156 TIGR00882 2A0105 oligosacchari 46.1 78 0.0017 26.9 6.6 55 115-169 306-361 (396)
157 PRK09705 cynX putative cyanate 45.6 1.6E+02 0.0034 25.2 8.5 103 56-172 49-152 (393)
158 TIGR00892 2A0113 monocarboxyla 44.5 1.2E+02 0.0026 26.8 7.7 46 124-170 116-161 (455)
159 PF13347 MFS_2: MFS/sugar tran 42.2 65 0.0014 28.0 5.6 55 117-171 104-159 (428)
160 TIGR00712 glpT glycerol-3-phos 42.2 1.2E+02 0.0026 26.4 7.3 19 56-74 292-310 (438)
161 PF13347 MFS_2: MFS/sugar tran 40.8 2.4E+02 0.0052 24.4 9.2 60 114-173 313-379 (428)
162 PRK10473 multidrug efflux syst 40.2 2.3E+02 0.0049 23.9 10.1 19 56-74 244-262 (392)
163 KOG3098|consensus 39.9 2.3E+02 0.005 26.0 8.8 110 50-176 53-162 (461)
164 PRK11010 ampG muropeptide tran 39.7 1.9E+02 0.0041 25.9 8.3 25 126-150 330-354 (491)
165 TIGR02718 sider_RhtX_FptX side 39.2 2.4E+02 0.0052 23.9 9.4 33 140-172 121-153 (390)
166 PRK11902 ampG muropeptide tran 37.7 2.6E+02 0.0056 23.9 10.8 28 125-152 316-343 (402)
167 KOG2615|consensus 36.8 45 0.00097 30.3 3.7 50 123-173 128-181 (451)
168 PRK11646 multidrug resistance 36.0 2.8E+02 0.0061 23.8 10.6 54 118-171 299-352 (400)
169 KOG3810|consensus 34.6 1.1E+02 0.0025 27.5 5.8 81 92-174 57-152 (433)
170 TIGR00887 2A0109 phosphate:H+ 34.3 3.3E+02 0.0072 24.1 10.4 35 136-170 412-446 (502)
171 PF03209 PUCC: PUCC protein; 34.0 1E+02 0.0022 27.8 5.5 52 121-172 94-145 (403)
172 PF06912 DUF1275: Protein of u 33.9 2.3E+02 0.0051 22.2 10.8 86 44-135 44-129 (209)
173 PRK09705 cynX putative cyanate 33.3 3.1E+02 0.0067 23.4 10.6 19 56-74 245-263 (393)
174 PLN00028 nitrate transmembrane 33.2 2E+02 0.0044 25.5 7.4 19 56-74 293-311 (476)
175 COG5336 Uncharacterized protei 32.1 94 0.002 23.0 4.1 29 150-178 41-69 (116)
176 PF00083 Sugar_tr: Sugar (and 32.1 2.8 6.1E-05 36.4 -4.6 110 56-175 51-161 (451)
177 TIGR02332 HpaX 4-hydroxyphenyl 31.5 3.4E+02 0.0074 23.4 10.9 19 56-74 284-302 (412)
178 PF12670 DUF3792: Protein of u 31.5 2E+02 0.0044 20.8 6.2 76 52-132 39-114 (116)
179 TIGR00805 oat sodium-independe 30.1 77 0.0017 29.8 4.3 55 118-172 174-228 (633)
180 cd01059 CCC1_like CCC1-related 26.4 84 0.0018 23.7 3.2 45 122-166 31-75 (143)
181 PRK09584 tppB putative tripept 26.2 3E+02 0.0065 24.8 7.3 56 117-172 113-170 (500)
182 KOG3762|consensus 25.9 53 0.0012 31.0 2.4 63 113-175 456-519 (618)
183 TIGR00894 2A0114euk Na(+)-depe 24.7 3.6E+02 0.0078 23.4 7.4 18 56-73 302-319 (465)
184 TIGR00882 2A0105 oligosacchari 24.4 2.5E+02 0.0055 23.7 6.3 20 55-74 42-61 (396)
185 COG0738 FucP Fucose permease [ 24.0 2E+02 0.0043 26.2 5.5 50 115-165 323-372 (422)
186 PRK09528 lacY galactoside perm 22.9 2.7E+02 0.0058 23.9 6.2 59 10-74 11-69 (420)
187 PRK10054 putative transporter; 22.9 4.7E+02 0.01 22.3 7.7 53 119-172 301-353 (395)
188 PLN02558 CDP-diacylglycerol-gl 21.5 1.8E+02 0.0039 23.5 4.5 39 86-130 14-52 (203)
189 PRK10207 dipeptide/tripeptide 21.3 3.7E+02 0.008 24.2 6.9 51 120-170 109-161 (489)
190 TIGR01272 gluP glucose/galacto 20.4 2.2E+02 0.0049 23.7 5.1 58 114-171 8-65 (310)
No 1
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=100.00 E-value=1.8e-46 Score=333.41 Aligned_cols=171 Identities=39% Similarity=0.798 Sum_probs=158.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcccceeeeeeecCCCCCCCCcccchHHHHHHHHHHhhhhhhhhhhcccCCCCChhHH
Q psy1201 5 VIAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWWV 84 (179)
Q Consensus 5 ~~v~k~~~~~~~~ifl~f~vTl~vFPgi~~~i~s~~~~~~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~~~~~~~~~~l 84 (179)
++++||+|++++++|++|++||++|||+++++++++.+.++| +.|++++++||+||++||.++.+..||+++.+++
T Consensus 265 ~~v~kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~----~~~~i~~~~fNvgD~vGR~~~~~~~~p~~~~~~l 340 (437)
T TIGR00939 265 WVVFTKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNW----FYPIICFLLFNLFDWLGRSLTSKFMWPDEDSRWL 340 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCcc----HHHHHHHHHHHHHHHHHhhhhheeEeeCCCccch
Confidence 578999999999999999999999999999999876544555 3678899999999999999999988886665688
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHH
Q psy1201 85 LLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVG 164 (179)
Q Consensus 85 ~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~G 164 (179)
++++++|++|||+|++||++++++.|++++||+++++++++||+||||++|++|++||++++++|||.||.+|+++++.|
T Consensus 341 ~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~G 420 (437)
T TIGR00939 341 PILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVG 420 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhC
Q psy1201 165 LAGGSGLGLFKDYVI 179 (179)
Q Consensus 165 l~~Gs~~s~~~~~~i 179 (179)
+++||.+|+++..++
T Consensus 421 l~~Gs~l~~~~~~~l 435 (437)
T TIGR00939 421 LALGAVLSFLFVAIL 435 (437)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999988764
No 2
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=100.00 E-value=1.2e-48 Score=332.55 Aligned_cols=169 Identities=41% Similarity=0.860 Sum_probs=4.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcccceeeeeeecCCCCCCCCcccchHHHHHHHHHHhhhhhhhhhhcccCCCCChhHH
Q psy1201 5 VIAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWWV 84 (179)
Q Consensus 5 ~~v~k~~~~~~~~ifl~f~vTl~vFPgi~~~i~s~~~~~~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~~~~~~~~~~l 84 (179)
++++||+|+++++++++|++|+++||++++.+++++. ++|++ +|.|+++|++||+||++||.++.+.+||.++++|+
T Consensus 139 ~~v~~~i~~~~~~i~~~f~vTl~~FP~it~~v~s~~~--~~~~~-~f~pv~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l 215 (309)
T PF01733_consen 139 WVVLKKIWPYALSIFLVFFVTLSVFPGITSAVQSSNN--PDWSS-YFVPVVLFLLFNLGDFIGRFLASWPRWPGPSPRWL 215 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhheeeeccceeeeeecccc--CCCcc-HHHHHHHHHHHHHHHHhcchhcceeEecccccccH
Confidence 6799999999999999999999999999999888755 45854 89999999999999999999999999986677888
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC-CCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHH
Q psy1201 85 LLFSISRFVFMPLVLLCNIQPRTH-LPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGV 163 (179)
Q Consensus 85 ~~~~~~R~~fiPlf~lc~~~~~~~-~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~ 163 (179)
++.+++|++|||+|++||++|+.+ .|++++||+++++++++||+||||++|++|++||++++++|||.||.+|+++|+.
T Consensus 216 ~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~ 295 (309)
T PF01733_consen 216 WILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSF 295 (309)
T ss_dssp ---------------------------------------------------HHHH-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998853 5889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy1201 164 GLAGGSGLGLFKD 176 (179)
Q Consensus 164 Gl~~Gs~~s~~~~ 176 (179)
|+++||++|++++
T Consensus 296 Gl~~Gs~ls~~~~ 308 (309)
T PF01733_consen 296 GLFIGSVLSFLLV 308 (309)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999875
No 3
>KOG1479|consensus
Probab=100.00 E-value=2.5e-40 Score=289.37 Aligned_cols=165 Identities=36% Similarity=0.621 Sum_probs=149.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcccceeeeeeecCCCCCCCCcccchHHHHHHHHHHhhhhhhhhhhcccCCCCChhH
Q psy1201 4 DVIAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWW 83 (179)
Q Consensus 4 ~~~v~k~~~~~~~~ifl~f~vTl~vFPgi~~~i~s~~~~~~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~~~~~~~~~~ 83 (179)
+|+++||+++++++++++|+|||++|||+++++++++.. ++| +.++..+..||++|++||.++.+.+|+.+| +
T Consensus 241 ~~~i~~k~~~~~~~i~lvy~VTLsiFPg~~~~~~~~~~~-~~~----y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r--~ 313 (406)
T KOG1479|consen 241 LWDIFKKIKDLAFNIFLVYFVTLSIFPGFCSEVKSSGLL-GDW----YALLLVFLSFNVFDLIGSILAALLTWPDPR--K 313 (406)
T ss_pred HHHHHHHHHHHhhchheeeeeeeEecchhhcccccCccc-chh----hHHHHHHHHhHHHHHhhhhhhhcccCCCCc--e
Confidence 589999999999999999999999999999999987763 456 345544444999999999999999998554 5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHH
Q psy1201 84 VLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGV 163 (179)
Q Consensus 84 l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~ 163 (179)
+++.+++|++|||+|.+||+.| .|+++++|+++++++.+||+||||+++++|++|||+++++|||.||++|++++..
T Consensus 314 l~i~v~lR~lfiPlF~~cn~~~---~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~ 390 (406)
T KOG1479|consen 314 LTIPVLLRLLFIPLFLLCNYPP---LPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVG 390 (406)
T ss_pred ehHHHHHHHHHHHHHHHhccCC---CCceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHH
Confidence 6678889999999999999988 5789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhh
Q psy1201 164 GLAGGSGLGLFKDYV 178 (179)
Q Consensus 164 Gl~~Gs~~s~~~~~~ 178 (179)
|+++|+.+|+...-+
T Consensus 391 Gl~~G~~~s~l~~~~ 405 (406)
T KOG1479|consen 391 GLALGSLLSWVFVIM 405 (406)
T ss_pred HHHHhhHHHHHHHHh
Confidence 999999999987654
No 4
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=98.40 E-value=6.1e-06 Score=73.29 Aligned_cols=159 Identities=13% Similarity=0.161 Sum_probs=112.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcccceeeeeeecCCCCCCCCcccchHHHHHHHHHHhhhhhhhhhhcccCCCCChhH
Q psy1201 4 DVIAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWW 83 (179)
Q Consensus 4 ~~~v~k~~~~~~~~ifl~f~vTl~vFPgi~~~i~s~~~~~~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~~~~~~~~~~ 83 (179)
+++..|+..++.+-++++|+-=..+-.|+.....-... ..+- +.+.+. .-++|++|.+++|....+.+.+ .
T Consensus 238 k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~-~~~~--r~~Y~~-Y~~~YQ~GVFISRSS~~~~rir-----~ 308 (402)
T PF02487_consen 238 KLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNS-FFSP--RDQYRW-YQLLYQLGVFISRSSLPFFRIR-----R 308 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCcc-CCCH--HHHHHH-HHHHHHHHHhhhhcceeeeehh-----h
Confidence 46677887778888888888877776776654321111 0111 223453 6789999999999988776552 2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHH
Q psy1201 84 VLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGV 163 (179)
Q Consensus 84 l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~ 163 (179)
+++++++..+-.-++++-... .+++|.|..+++++.-|+..|-.-.-++....+.++++|||.+=...+++-+.
T Consensus 309 lwils~LQ~~nl~~~~l~s~~------~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~ 382 (402)
T PF02487_consen 309 LWILSLLQVINLVFLLLQSWY------RFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSL 382 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhH
Confidence 445666676665555433321 13567787788888888888865555566667788999999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q psy1201 164 GLAGGSGLGLFKDY 177 (179)
Q Consensus 164 Gl~~Gs~~s~~~~~ 177 (179)
|+.+++++++.++.
T Consensus 383 GI~lAgll~l~le~ 396 (402)
T PF02487_consen 383 GILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 5
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=95.71 E-value=0.27 Score=41.46 Aligned_cols=149 Identities=12% Similarity=0.141 Sum_probs=84.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhcccceeeeeeecCCCCCCCCcccchHHHHHHHHHHhhhhhhhhhhcc-cCCCCCh
Q psy1201 3 YDVIAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYL-QWPRNNG 81 (179)
Q Consensus 3 ~~~~v~k~~~~~~~~ifl~f~vTl~vFPgi~~~i~s~~~~~~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~-~~~~~~~ 81 (179)
++|..+.-++.......+.....-.+.|.+..+.. +++.. .- .....+.+++.+|..+.++. +.-++|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~s~~~-~g-~~~~~~~~~~~~~~~~~G~l~Dr~g~r- 77 (405)
T TIGR00891 9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFG--------LTTVD-AA-SLISAALISRWFGALMFGLWGDRYGRR- 77 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CChhh-HH-HHHHHHHHHHHHHHHHHHHHHHHhccH-
Confidence 45555555554444444444444345554432211 11110 11 35677888888888877753 222232
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHH
Q psy1201 82 WWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSL 161 (179)
Q Consensus 82 ~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l 161 (179)
+.+.... ++..-..+++.. .++-+...+..++.|+..|-.......+..+..+++||..+..+.....
T Consensus 78 ~~~~~~~---~~~~~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 145 (405)
T TIGR00891 78 LPMVTSI---VLFSAGTLACGF---------APGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGY 145 (405)
T ss_pred HHHHHHH---HHHHHHHHHHHH---------hccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHH
Confidence 3332222 222222222221 1244556677788888888777777778888888899988888888777
Q ss_pred HHHHHHHHHHHHh
Q psy1201 162 GVGLAGGSGLGLF 174 (179)
Q Consensus 162 ~~Gl~~Gs~~s~~ 174 (179)
..|..+|..++-.
T Consensus 146 ~~g~~~~~~l~~~ 158 (405)
T TIGR00891 146 AVGAVVAAQVYSL 158 (405)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777766543
No 6
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=95.67 E-value=0.29 Score=40.49 Aligned_cols=111 Identities=12% Similarity=0.040 Sum_probs=72.4
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++..++.....+. +.-++ ++.+....+...+..-+..+....+. .+-+..++..++.|+.+|-..
T Consensus 39 ~~~~~~~~~~i~~~~~G~l~dr~g~-r~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~ 110 (365)
T TIGR00900 39 AALAGMLPYVVLSPIAGALADRYDR-KKVMIGADLIRAVLVAVLPFVALLGG-------LNIWQVYVLAGILAIAQAFFT 110 (365)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhch-hHHHHHHHHHHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHH
Confidence 5678888888887776542 22222 23333333334333222222221110 245666778888899999998
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF 174 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~ 174 (179)
+....+.++..+++||..+-.+.......|..+|..++-.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 150 (365)
T TIGR00900 111 PAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL 150 (365)
T ss_pred HHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999888888888888887766533
No 7
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=95.55 E-value=0.16 Score=35.78 Aligned_cols=59 Identities=22% Similarity=0.221 Sum_probs=47.1
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL 173 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~ 173 (179)
+-+...+..++.|+..|...+....+.++..++++|..+..+.......|..+|..++-
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 108 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGG 108 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHH
Confidence 44566777889999999988888888889888888888888877777777777765543
No 8
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=95.55 E-value=0.08 Score=43.35 Aligned_cols=108 Identities=24% Similarity=0.233 Sum_probs=75.2
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
.....+.+++.+++...++. +.-++| +++....+...+...+..++ ++.+...+..++.|+..|..
T Consensus 38 ~~~~~~~~~~~~~~~~~g~~~d~~g~r-~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~g~~~~~~ 104 (352)
T cd06174 38 LIVSAFSLGYALGSLLAGYLSDRFGRR-RVLLLGLLLFALGSLLLAFA------------SSLWLLLVGRFLLGLGGGAL 104 (352)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCCc-hhhHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHcccccc
Confidence 35778889999988877653 222233 34434444444333332221 34567778888899999998
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFK 175 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~ 175 (179)
......+.++..++|||..+-.+.......|..+|..++-.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 146 (352)
T cd06174 105 YPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL 146 (352)
T ss_pred cHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999998888888888888887766443
No 9
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=95.29 E-value=0.19 Score=43.75 Aligned_cols=141 Identities=13% Similarity=0.133 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHhhcccceeeeeeecCCCCCCCCcccchHHHHHHHHHHhhhhhhhhhhcc--cCCCCChhHHHHHHH
Q psy1201 12 WMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYL--QWPRNNGWWVLLFSI 89 (179)
Q Consensus 12 ~~~~~~ifl~f~vTl~vFPgi~~~i~s~~~~~~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~--~~~~~~~~~l~~~~~ 89 (179)
+......++.......++|-+....+.+. .|+. ..+.. ....+++.+.+.+...++. ++. + ++.+....+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~s~-~~~gl-~~~~~~l~~~~~~~~~G~l~dr~g-~-k~~l~~~~~ 84 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQL----GWAA-VMVGI-ALGLRQFIQQGLGIFGGAIADRFG-A-KPMIVTGML 84 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCcH-HHHHH-HHHHHHHHHHHHHhhhhHHHHHhC-c-hHHHHHHHH
Confidence 44445556666666677777665433221 2321 11333 5667777776665554432 222 2 233333333
Q ss_pred HHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy1201 90 SRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGS 169 (179)
Q Consensus 90 ~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs 169 (179)
...+ .++.+.. -++-+..++..++.|+.+|..........++..++|+|..+-.+.....+.|..+|.
T Consensus 85 ~~~~---~~~~~~~---------~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~ 152 (400)
T PRK11646 85 MRAA---GFATMAI---------AHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGA 152 (400)
T ss_pred HHHH---HHHHHHH---------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 2222321 124456677778889988887766666677778888888888888888888887776
Q ss_pred HHH
Q psy1201 170 GLG 172 (179)
Q Consensus 170 ~~s 172 (179)
.++
T Consensus 153 ~l~ 155 (400)
T PRK11646 153 LLG 155 (400)
T ss_pred HHH
Confidence 655
No 10
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=95.13 E-value=0.32 Score=43.42 Aligned_cols=106 Identities=18% Similarity=0.312 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhh
Q psy1201 52 TPVIAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSN 130 (179)
Q Consensus 52 ~pvi~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tn 130 (179)
++. ..+.|.++-++|..+.++. ++ +++ +.+.... =+.-+.+..+.-. =++.+...+.+++.|+++
T Consensus 249 vs~-~Ll~~Gv~~~~Gn~~gGrl~dr-~~~-~~l~~~~--~l~a~~~l~l~~~---------~~~~~~~~~~~~~wg~a~ 314 (394)
T COG2814 249 VSL-VLLAFGIAGFIGNLLGGRLADR-GPR-RALIAAL--LLLALALLALTFT---------GASPALALALLFLWGFAF 314 (394)
T ss_pred HHH-HHHHHHHHHHHHHHHHhhhccc-cch-hHHHHHH--HHHHHHHHHHHHh---------cchHHHHHHHHHHHHHHh
Confidence 454 5789999999999998864 33 233 2221111 1111222222211 124466677777777777
Q ss_pred hhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 131 GYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 131 Gyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+=....--+.--+ ..||++|.++.++.-+.|.|+.+|+.++
T Consensus 315 ~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lG 355 (394)
T COG2814 315 SPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALG 355 (394)
T ss_pred hhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443322222222 4579999999999999999999999886
No 11
>TIGR00893 2A0114 d-galactonate transporter.
Probab=95.12 E-value=0.23 Score=41.12 Aligned_cols=106 Identities=19% Similarity=0.160 Sum_probs=71.4
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
.....+.++..+|....++. +.-+++ +.+....+...+.. .++.. .++-+..++..++.|+..|..
T Consensus 33 ~~~~~~~~~~~~~~~~~g~l~d~~g~r-~~~~~~~~~~~~~~---~~~~~---------~~~~~~~~~~~~l~g~~~~~~ 99 (399)
T TIGR00893 33 YVFSAFSWGYVVGQFPGGWLLDRFGAR-KTLAVFIVIWGVFT---GLQAF---------AGAYVSLYILRVLLGAAEAPF 99 (399)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCcc-eeeHHHHHHHHHHH---HHHHH---------HcCHHHHHHHHHHHHHHHHhh
Confidence 35778888988888877653 222222 33322222222221 12221 124466677888999999999
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL 173 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~ 173 (179)
.+....+.++..++|||..+-.+.......|..+|..++-
T Consensus 100 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 139 (399)
T TIGR00893 100 FPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVG 139 (399)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 9888899999999999998888888888888888876654
No 12
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=94.96 E-value=0.37 Score=40.50 Aligned_cols=104 Identities=13% Similarity=0.051 Sum_probs=66.4
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++..+|..+.++. +..++ ++++.... ++..-..+++.. .++.+..++..++.|+..|...
T Consensus 45 ~~~~~~~~~~~~~~~~g~l~d~~g~-r~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~~~~l~g~~~~~~~ 111 (385)
T TIGR00710 45 TLTLYLLGFAAGQLLWGPLSDRYGR-RPVLLLGL---FIFALSSLGLAL---------SNNIETLLVLRFVQAFGASAGS 111 (385)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcCC-hHHHHHHH---HHHHHHHHHHHH---------HccHHHHHHHHHHHHcchhHHH
Confidence 5678888888888877653 22223 33332222 222222222221 1244566777788899999888
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+......++..++++|..+-.+.......|..+|..++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 149 (385)
T TIGR00710 112 VISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLG 149 (385)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888777777777777777776554
No 13
>PRK12382 putative transporter; Provisional
Probab=94.94 E-value=0.31 Score=41.74 Aligned_cols=153 Identities=20% Similarity=0.118 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccceeeeeeecCCCCCCCCcccchHHHHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHH
Q psy1201 10 SIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFS 88 (179)
Q Consensus 10 ~~~~~~~~ifl~f~vTl~vFPgi~~~i~s~~~~~~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~ 88 (179)
..+...++.++.++..-..-|-+...++++... +.+ . .. .....+.++..+++...++. +.-++| +.+....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~-s~~---~-~g-~~~s~~~~~~~i~~~~~G~l~Dr~g~r-~~l~~~~ 88 (392)
T PRK12382 16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGF-GNT---M-VG-IAVGIQFLATVLTRGYAGRLADQYGAK-RSALQGM 88 (392)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCC-cHH---H-HH-HHHHHHHHHHHHHhhhhhHHHHhhcch-HHHHHHH
Confidence 344444555555554334455544333322111 122 1 23 36788999999887776653 222233 3332322
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHH
Q psy1201 89 ISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGG 168 (179)
Q Consensus 89 ~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~G 168 (179)
+...+..-.+.++...+.. .-.+-+...+.-++.|+..|...+....+.++..++|||..+-..+......|..+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g 164 (392)
T PRK12382 89 LACGLAGLAYLLAAILPVS----APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAG 164 (392)
T ss_pred HHHHHHHHHHHhhhccccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHH
Confidence 3333222222233322211 012334455666778888887777777777888888888888777777788888777
Q ss_pred HHHHH
Q psy1201 169 SGLGL 173 (179)
Q Consensus 169 s~~s~ 173 (179)
..++-
T Consensus 165 ~~~~~ 169 (392)
T PRK12382 165 APLGL 169 (392)
T ss_pred HHHHH
Confidence 77653
No 14
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=94.47 E-value=0.33 Score=41.56 Aligned_cols=153 Identities=15% Similarity=0.059 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccceeeeeeecCCCCCCCCcccchHHHHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHH
Q psy1201 9 GSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLF 87 (179)
Q Consensus 9 k~~~~~~~~ifl~f~vTl~vFPgi~~~i~s~~~~~~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~ 87 (179)
|+.....++.++.++-.-...|.+...++.+.. +++.. .. .....+.++..++....++. +.-++| +.+...
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g----~s~~~-~g-~~~~~~~~~~~i~~~~~G~l~Dr~g~r-~~l~~~ 87 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLG----FSAFL-AG-LVISLQYLATLLSRPHAGRYADTLGPK-KAVVFG 87 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----ccHHH-HH-HHHHHHHHHHHHhchhhHhHHhccCCc-chHHHH
Confidence 344445555555555544455555544432221 21111 23 36778889998888877753 222233 333233
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHH
Q psy1201 88 SISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAG 167 (179)
Q Consensus 88 ~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~ 167 (179)
.+...+......+....+. .+ ..+-+..++.-++.|+..|-.......+.++..+++||..+..+.......|..+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~--~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 163 (399)
T PRK05122 88 LCGCALSGLLYLLAGLLAA--WP--VLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAI 163 (399)
T ss_pred HHHHHHHHHHHHHhhhhhc--cc--hhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHH
Confidence 3333322222212211110 00 1122345666678899888877777777788888888887777777777777777
Q ss_pred HHHHH
Q psy1201 168 GSGLG 172 (179)
Q Consensus 168 Gs~~s 172 (179)
|..++
T Consensus 164 g~~l~ 168 (399)
T PRK05122 164 GAPLG 168 (399)
T ss_pred HHHHH
Confidence 66664
No 15
>TIGR00898 2A0119 cation transport protein.
Probab=94.45 E-value=0.67 Score=41.13 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=74.1
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
.....+.+|-.+|..+.++. ..-++ ++.+.... ++..-..+++.. -++-+..++.-++.|+..|-.
T Consensus 131 ~~~s~~~~g~~~g~~~~g~l~Dr~Gr-r~~~~~~~---~~~~i~~~~~~~---------~~~~~~~~~~r~l~G~~~~~~ 197 (505)
T TIGR00898 131 LTQSCFFVGVLLGSFVFGYLSDRFGR-KKVLLLST---LVTAVSGVLTAF---------SPNYTVFLVFRLLVGMGIGGI 197 (505)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhhccc-hHHHHHHH---HHHHHHHHHHHH---------cccHHHHHHHHHHHHhhccch
Confidence 35778899999998887754 22222 23332222 222222222221 134466778888999999999
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFK 175 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~ 175 (179)
......+..+..++++|..++.+.......|..+|..++..+
T Consensus 198 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 239 (505)
T TIGR00898 198 WVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI 239 (505)
T ss_pred HHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988888888888887776543
No 16
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=94.35 E-value=0.94 Score=39.31 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=67.2
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++-.+|+.+.... +.-+ +++.+....+... -..+++.. .++-+..++.-++.|+.+|-..
T Consensus 60 ~~~~~~~~~~~~~~~~g~l~Dr~g-rr~~~~~~~~~~~---~~~~~~~~---------~~~~~~l~~~r~l~G~~~g~~~ 126 (394)
T PRK10213 60 SVTVTAFVAMFASLFITQTIQATD-RRYVVILFAVLLT---LSCLLVSF---------ANSFSLLLIGRACLGLALGGFW 126 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccC-cHHHHHHHHHHHH---HHHHHHHH---------HChHHHHHHHHHHHHHhhHHHH
Confidence 4567888888888877653 2222 2233322222222 22233331 2355667777789999999888
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL 173 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~ 173 (179)
..+..+.++..++|+|..+-.......+.|..+|..++-
T Consensus 127 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~ 165 (394)
T PRK10213 127 AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGS 165 (394)
T ss_pred HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887777777666777776666553
No 17
>PRK10054 putative transporter; Provisional
Probab=94.24 E-value=0.7 Score=40.13 Aligned_cols=148 Identities=11% Similarity=0.019 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccceeeeeeecCCCCCCCCcccchHHHHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHH
Q psy1201 9 GSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLF 87 (179)
Q Consensus 9 k~~~~~~~~ifl~f~vTl~vFPgi~~~i~s~~~~~~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~ 87 (179)
|..+...++.++..+....+.|-+....+++. .|++.. + -.....+.++..+++...++. +.-++| +.+...
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~----g~s~~~-~-g~~~s~~~~~~~~~~~~~G~l~Dr~g~k-~~~~~~ 79 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQY----SLSVDL-I-GYAMTIALTIGVVFSLGFGILADKFDKK-RYMLLA 79 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCHHH-H-HHHHHHHHHHHHHHHHHHHHHHhhcCcc-hhHHHH
Confidence 34555555556665555566665554433221 232111 1 134566777777777666543 221222 333333
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHH
Q psy1201 88 SISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAG 167 (179)
Q Consensus 88 ~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~ 167 (179)
.+...+-..++.+ .++-+..++...+.+...+-.........++..++++|..+-.+.....++|..+
T Consensus 80 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~i 147 (395)
T PRK10054 80 ITAFASGFIAIPL------------VNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTV 147 (395)
T ss_pred HHHHHHHHHHHHH------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHH
Confidence 3334333222211 1232333333444555444444445555677778888888877777777888888
Q ss_pred HHHHHHhh
Q psy1201 168 GSGLGLFK 175 (179)
Q Consensus 168 Gs~~s~~~ 175 (179)
|..++-.+
T Consensus 148 gp~l~~~l 155 (395)
T PRK10054 148 GPPLGTLL 155 (395)
T ss_pred HHHHHHHH
Confidence 87665443
No 18
>TIGR00895 2A0115 benzoate transport.
Probab=94.19 E-value=0.8 Score=38.32 Aligned_cols=104 Identities=20% Similarity=0.142 Sum_probs=66.9
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++..+|..+..+. +.-+ +++++....+.-.+ ..+++.. .++-+..++..++.|+..|...
T Consensus 57 ~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~---~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~ 123 (398)
T TIGR00895 57 LFSAGLIGMAFGALFFGPLADRIG-RKRVLLWSILLFSV---FTLLCAL---------ATNVTQLLILRFLAGLGLGGLM 123 (398)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhh-hHHHHHHHHHHHHH---HHHHHHH---------ccchHHHHHHHHHHhcccccch
Confidence 5677888888888776653 2211 22333222221111 1122221 1244556677888899999888
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
.....+..+..++++|..+-.+.......|..+|..++
T Consensus 124 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 161 (398)
T TIGR00895 124 PNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLA 161 (398)
T ss_pred hhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888887665
No 19
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=93.88 E-value=0.66 Score=37.85 Aligned_cols=106 Identities=20% Similarity=0.239 Sum_probs=69.7
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
.....+.++..+|+....+. ++-+++++.+... -.+.....++... .++-+...+..++.|+..|..
T Consensus 215 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~ 282 (352)
T cd06174 215 LLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIG---LLLAALGLLLLAL---------APSLALLLVALLLLGFGLGFA 282 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHHHHHHH---------hccHHHHHHHHHHHHHHHhcc
Confidence 36778899999999987753 2211221022111 1222111111211 123466778888999999999
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
.+....+..+..++++|..+-.+....-..|..+|..++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 321 (352)
T cd06174 283 FPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA 321 (352)
T ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888888888888888877777665
No 20
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=93.76 E-value=0.74 Score=37.90 Aligned_cols=106 Identities=20% Similarity=0.207 Sum_probs=74.6
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++-.++....++. +.-+ +++.+....+.+.+. .+++... ++.+..++..++.|+.+|...
T Consensus 37 ~~~~~~~~~~~~~~~~g~l~dr~g-~r~~l~~~~~~~~~~---~~~~~~~---------~~~~~~~~~~~l~g~~~~~~~ 103 (352)
T PF07690_consen 37 LFSAFFLGSALFSPFAGYLSDRFG-RRRVLIIGLLLFALG---SLLLAFA---------SNFWLLLIARFLLGIGSGFFS 103 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHH---HHHHHHH---------CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-CeeeEeehhhhhhhH---HHHhhhh---------hhHHHHhhhcccccccccccc
Confidence 5677888888888777653 2222 233443444444433 1111110 356778889999999999999
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF 174 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~ 174 (179)
.....+.++..+++||+.+-.+.......|..+|..++-.
T Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 143 (352)
T PF07690_consen 104 PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGF 143 (352)
T ss_dssp HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhhhhccccccchhhhhhhcccchhhh
Confidence 9999999999999999999989998999998888776643
No 21
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=93.65 E-value=1 Score=40.27 Aligned_cols=114 Identities=13% Similarity=0.099 Sum_probs=77.0
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
.....+++|-.+|..+..+. +.-+++ +.+....+.=.+.. +++...+.. .| ..+-+..++.-++.|+..|-.
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr-~~~~~~~~~~~v~~---~~~~~~~~~-~~--~~~~~~~~~~r~l~G~~~g~~ 132 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRK-RVYGMELIIMIIAT---VASGLSPGS-SP--KSVMATLCFWRFWLGVGIGGD 132 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccH-HHHHHHHHHHHHHH---HHHHHccCc-cc--chHHHHHHHHHHHHHHHHhhh
Confidence 35778899999999988764 222222 22222222122211 222222111 01 123457788888999999999
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFK 175 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~ 175 (179)
.+....+..+..++++|..+..++..+..+|..+|..++..+
T Consensus 133 ~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~ 174 (502)
T TIGR00887 133 YPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV 174 (502)
T ss_pred hHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998887654
No 22
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=93.53 E-value=0.71 Score=45.20 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=76.7
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
....+|.++=.++..+.++. ..-+ +++.+....+++.++.-+..++.. .++-+..++..++.|+..|..
T Consensus 51 ~~~~~~~l~~~l~~~~~G~l~Dr~g-rk~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~~~~~~ 120 (1146)
T PRK08633 51 IVNALFLLPFLLLSSPAGFLADKFS-KNRVIRIVKLFEVGLTLLIVLAYY---------LGWFWLAFAVTFLLGAQSAIY 120 (1146)
T ss_pred HHHHHHHHHHHHHhhhHhhhccccc-HHHHHHHHHHHHHHHHHHHHHHHH---------HccHHHHHHHHHHHHHHHHhh
Confidence 35667888888877776653 2222 223343444556666555555532 134466677778889999999
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF 174 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~ 174 (179)
......+.++.+++++|..+..+.......|..+|..++-.
T Consensus 121 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~ 161 (1146)
T PRK08633 121 SPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSF 161 (1146)
T ss_pred chHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99888899999999999998888888888888888776543
No 23
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=93.39 E-value=1.3 Score=36.64 Aligned_cols=106 Identities=11% Similarity=0.077 Sum_probs=65.1
Q ss_pred HHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLAN 135 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~t 135 (179)
....++++..+|+....+......+++.. ..+. =..-+.++.+. .. + ++-+...+..+++|+..|-...
T Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~-~~~~~~~~~~~-~~-----~---~~~~~~~~~~~~~g~~~~~~~~ 320 (365)
T TIGR00900 252 VLAAFGLGALLGALLLGLLGRYFKRMALM-TGAI-FVIGLAILVVG-LT-----P---PNFPLFLVLWFAIGVGYGPINV 320 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhHHH-HHHH-HHHHHHHHHHH-hh-----c---hhHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888876532211222222 1110 01111111111 11 0 0245567778888999988888
Q ss_pred hhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 136 ITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 136 l~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
....+..+.+++++|..+-.+.......|..+|..++
T Consensus 321 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 357 (365)
T TIGR00900 321 PQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILA 357 (365)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888999988888888877778777776653
No 24
>TIGR00895 2A0115 benzoate transport.
Probab=93.34 E-value=1.9 Score=36.03 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=64.1
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
.....++++..+|+.+..+. +..+++ +.. .....- .+-.+++... .++.+...+..+++|+..|-.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~~~~~--~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~ 355 (398)
T TIGR00895 289 TGGALFNFGGVIGSIIFGWLADRLGPR-VTA-LLLLLG--AVFAVLVGST---------LFSPTLLLLLGAIAGFFVNGG 355 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchH-HHH-HHHHHH--HHHHHHHHHH---------hhCHHHHHHHHHHHHHHHHHH
Confidence 35678889999999988764 222122 222 111111 1111111110 134556677778888888877
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL 171 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~ 171 (179)
.+....+..+..++++|..+-.++......|..+|..+
T Consensus 356 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~ 393 (398)
T TIGR00895 356 QSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPIL 393 (398)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77788888888888888877766666667777777654
No 25
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=93.19 E-value=1.1 Score=39.21 Aligned_cols=108 Identities=19% Similarity=0.117 Sum_probs=64.1
Q ss_pred HHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHh-hcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLC-NIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc-~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
.....+++..+|+.+..+..-+..+++.+......-. +-...+. ...+. .+.+.....+++.|+..|...
T Consensus 296 ~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~g~~~~~ 366 (485)
T TIGR00711 296 HILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYA--VGFYWRAFTFTPD-------TPFLAIALPQFIRGFGMGCFF 366 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHH--HHHHHHhccCCCC-------CCHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999888764211122232211111111 1111111 11111 133445566778888888877
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
...+..+.+.++++++..+..+..+.-..|-.+|..+.
T Consensus 367 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~ 404 (485)
T TIGR00711 367 MPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALI 404 (485)
T ss_pred HHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677778888888888888888888888876653
No 26
>PRK10489 enterobactin exporter EntS; Provisional
Probab=93.12 E-value=1.6 Score=37.69 Aligned_cols=105 Identities=15% Similarity=0.149 Sum_probs=62.3
Q ss_pred HHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLAN 135 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~t 135 (179)
....+.++..+|+.+..+......+++.+....+ +....+++... .++-+...+.++++|+..|....
T Consensus 264 ~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~---~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~ 331 (417)
T PRK10489 264 LYAAVPLGAALGALTSGWLAHSARPGLLMLLSTL---GSFLAVGLFGL---------MPMWILAVLCLALFGYLSAISSL 331 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHH---HHHHHHHHHHc---------cchHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999887764222122223322211 11111111111 12334556777788888877666
Q ss_pred hhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 136 ITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 136 l~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
....+..+..++++|..+-.++......|..+|..+.
T Consensus 332 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~ 368 (417)
T PRK10489 332 LQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALL 368 (417)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHH
Confidence 6666666677888888887777777777777776654
No 27
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=93.07 E-value=1.3 Score=37.06 Aligned_cols=103 Identities=15% Similarity=0.049 Sum_probs=60.3
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccc-chhHHHHHHHHHHhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLIT-SDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~-~d~~~~~~~~lfg~tnGyl 133 (179)
....+.+++.++....++. +.-+++ +.+.... ++.....+++.. .+ +-+...+..++.|+.+|..
T Consensus 42 ~~~~~~~~~~~~~~~~g~l~dr~g~r-~~~~~~~---~~~~i~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~ 108 (366)
T TIGR00886 42 LVAVPVLAGAVLRIILGFLVDKFGPR-YTTTLSL---LLLAIPCLWAGL---------AVQSYSVLLLLRLFIGIAGGSF 108 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCch-HHHHHHH---HHHHHHHHHHHH---------HhhhHHHHHHHHHHHHHhchhh
Confidence 5678888888888877753 222222 3332222 222222222221 12 4455566777788887755
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+.+..+..+..+++||..+..+.....+.|..+|..++
T Consensus 109 -~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 146 (366)
T TIGR00886 109 -ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVM 146 (366)
T ss_pred -HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 34555666677888888887777766666766666554
No 28
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=93.06 E-value=0.72 Score=40.94 Aligned_cols=108 Identities=17% Similarity=0.184 Sum_probs=66.0
Q ss_pred HHHHHHHhhhhhhhhhhccc-CCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYLQ-WPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~~-~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.+++.++|.+..+.. ....+++....+..+-+.....++++.. .++.+..++..+++|+++|-..
T Consensus 281 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~---------~~~~~~~~i~~~~~G~~~g~~~ 351 (455)
T TIGR00892 281 LLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL---------AGDYTGLVIYCIFFGLSFGSVG 351 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH---------hchHHHHHHHHHHHHHHhchHH
Confidence 45677888999887766532 1101111111222222222222233321 1344566777889999999888
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+.......+.++++++..+-.++......|-.+|..++
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~ 389 (455)
T TIGR00892 352 ALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLA 389 (455)
T ss_pred HHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccce
Confidence 88777888888888888887777777777877776543
No 29
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=92.99 E-value=2.1 Score=36.56 Aligned_cols=102 Identities=20% Similarity=0.113 Sum_probs=57.0
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++..+||.+..+. +..++ ++.. ... -.+....+++... .++.+...+..+++|+..|-..
T Consensus 254 ~~~~~~~~~~~~~~~~g~l~~r~~~-~~~~-~~~--~~~~~~~~~~~~~---------~~~~~~~~~~~~l~G~~~~~~~ 320 (399)
T PRK05122 254 ALTLFGVAFVGARLLFGNLINRLGG-LRVA-IVS--LLVEILGLLLLWL---------APSPWMALIGAALTGFGFSLVF 320 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-HHHH-HHH--HHHHHHHHHHHHH---------hccHHHHHHHHHHHHHhHHHHH
Confidence 3567888889999887753 22122 2322 111 1222222222221 1244555666778888877554
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSG 170 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~ 170 (179)
.......-+..++|+|..+-.++......|..+|..
T Consensus 321 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 356 (399)
T PRK05122 321 PALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGP 356 (399)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444344446677788888777777777777655543
No 30
>PRK12382 putative transporter; Provisional
Probab=92.80 E-value=1.4 Score=37.66 Aligned_cols=104 Identities=13% Similarity=0.029 Sum_probs=58.4
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++..+|+....+. +..+++ +.+..... +....+++... .++.+...+..++.|++.|-..
T Consensus 254 ~~~~~~~~~~~~~~~~g~l~~r~g~~-~~~~~~~~---~~~~~~~~~~~---------~~~~~~~~~~~~l~g~~~~~~~ 320 (392)
T PRK12382 254 TLTAFGGAFVLMRVLFGWMPDRFGGV-KVAIVSLL---VETVGLLLLWL---------APTAWVALAGAALTGAGCSLIF 320 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-eehHHHHH---HHHHHHHHHHH---------cccHHHHHHHHHHHHHHHHhHH
Confidence 3456788888888776543 222222 33322222 22222211111 1233455666777888887655
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
........+..++++|..+-.+.......|-.+|..++
T Consensus 321 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~ 358 (392)
T PRK12382 321 PALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLA 358 (392)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55545555667778887777777777777777776543
No 31
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=92.64 E-value=2.5 Score=35.63 Aligned_cols=104 Identities=12% Similarity=0.087 Sum_probs=64.8
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++-.+|+...++. +..+++ +++.... ++.....+++.. .++-+...+..++.|+..|...
T Consensus 31 ~~~~~~~~~~~~~~~~g~l~d~~g~~-~~~~~~~---~~~~i~~~~~~~---------~~~~~~~~~~~~l~g~~~~~~~ 97 (377)
T PRK11102 31 TLSAYILGFAIGQLFYGPMADSFGRK-PVILGGT---LVFALAAVACAL---------AQTIDQLIYMRFLHGLAAAAAS 97 (377)
T ss_pred HHHHHHHHHHHHHHhhchHHhhcCCh-HHHHHHH---HHHHHHHHHHHH---------HccHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888887653 222232 3332222 222222222221 1233555677778888888887
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
.....+.++..+++||..+..+.......|..+|..++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 135 (377)
T PRK11102 98 VVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIG 135 (377)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888888888887777777777777776654
No 32
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=92.10 E-value=2.2 Score=38.19 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=46.2
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+.+.....+++.|+..|.........+-+.++++++..++.+....-++|.++|..++
T Consensus 350 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~ 407 (495)
T PRK14995 350 QQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIF 407 (495)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3344566788889999988776666666778999999999999999999988887654
No 33
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=92.10 E-value=3.5 Score=35.04 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=54.6
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.+++.++....++. +.- .+++.+.... ++.....+++.. .++-+..++..++.|+..|+..
T Consensus 59 ~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~ 125 (408)
T PRK09874 59 VFSITFLFSAIASPFWGGLADRK-GRKIMLLRSA---LGMGIVMVLMGL---------AQNIWQFLILRALLGLLGGFVP 125 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHH---HHHHHHHHHHHH---------HhhHHHHHHHHHHHHHhhhhHH
Confidence 5677888888877765542 221 2223332222 222222222221 1244556666777888777654
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
. .....++..++++|..+-.........|..+|..++
T Consensus 126 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (408)
T PRK09874 126 N-ANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAG 162 (408)
T ss_pred h-HHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3 444556667777776665555555555655554443
No 34
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=92.03 E-value=2.7 Score=35.88 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=61.9
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
.....+.++..+|....++. ..-++ ++++.... +++....+++... ++-+..++..++.|+.+|..
T Consensus 42 ~~~~~~~~~~~~~~~~~G~l~Dr~g~-r~~l~~~~---~~~~i~~~~~~~~---------~~~~~~~~~~~l~g~~~~~~ 108 (392)
T PRK10473 42 IAFSVYLAGMAAAMLFAGKIADRSGR-KPVAIPGA---ALFIIASLLCSLA---------ETSSLFLAGRFLQGIGAGCC 108 (392)
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHhCC-hHHHHHHH---HHHHHHHHHHHHh---------CcHHHHHHHHHHHHhhhhHH
Confidence 35677888888877766653 22122 23332222 2222222223211 13344556667889998888
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
......+.++..+++||..+-.........|..+|..++
T Consensus 109 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~ 147 (392)
T PRK10473 109 YVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLG 147 (392)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877888888888888888776665555555555555544
No 35
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=91.98 E-value=1.6 Score=38.04 Aligned_cols=105 Identities=11% Similarity=0.047 Sum_probs=64.5
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....|.++=.+|....++. +.- .+++.+ ... =+++....+++.. -+|-+..++.-++.|+.+|-..
T Consensus 48 ~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~-~~~--~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~~~~~~~ 114 (412)
T TIGR02332 48 AATLFYAAYVICGIPSNIMLAII-GARRWI-AGI--MVLWGIASTATMF---------ATGPESLYLLRILVGIAEAGFL 114 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHh-ChHHHH-HHH--HHHHHHHHHHHHH---------hcCHHHHHHHHHHHHHHHhhHH
Confidence 4567777777777666542 111 122322 222 1222222222322 1344566677788899998777
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL 173 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~ 173 (179)
...+.+..+..++++|..+..+.......|..+|..++-
T Consensus 115 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~ 153 (412)
T TIGR02332 115 PGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSG 153 (412)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777788888899988888888788888877776653
No 36
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=91.91 E-value=2.3 Score=36.35 Aligned_cols=105 Identities=15% Similarity=0.047 Sum_probs=60.9
Q ss_pred HHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLAN 135 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~t 135 (179)
....++++..+|+.+..+..-...+++.+ .....-. .+-+.. ... ..+.+...+..+++|+..+-..+
T Consensus 260 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~-~~~~~~~-~~~~~~-~~~---------~~~~~~~~~~~~~~g~~~~~~~~ 327 (406)
T PRK11551 260 VQIAFNIGGALGSLLIGALMDRLRPRRVV-LLIYAGI-LASLAA-LAA---------APSFAGMLLAGFAAGLFVVGGQS 327 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHH-HHHHHH-HHh---------cCcHHHHHHHHHHHHHHHHhHHH
Confidence 56788999999999887642111122222 1111111 111111 111 12334445556667776655566
Q ss_pred hhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 136 ITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 136 l~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
..+...++..++++|..+-.++...-..|..+|..+.
T Consensus 328 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~ 364 (406)
T PRK11551 328 VLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLA 364 (406)
T ss_pred HHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhH
Confidence 6777788888888888877777777777777776653
No 37
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=91.88 E-value=1.1 Score=36.81 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=45.9
Q ss_pred cchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHH
Q psy1201 114 TSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGG 168 (179)
Q Consensus 114 ~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~G 168 (179)
++..+.....+++|+..|........+..+.+++|++..+..+....-++|..+|
T Consensus 297 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ig 351 (352)
T PF07690_consen 297 SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIG 351 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 3556777788889999999999999999999988898888888888888777765
No 38
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=91.75 E-value=0.46 Score=39.41 Aligned_cols=101 Identities=18% Similarity=0.079 Sum_probs=64.7
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++..+|....++. +.-+++ +.+....+.-.+ ..+++.. .++-+..++..++.|+..|-..
T Consensus 35 ~~~~~~~~~~~~~~~~g~l~dr~g~r-~~~~~~~~~~~~---~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~ 101 (379)
T TIGR00881 35 LLSSFSIAYGISKFVMGSVSDRSNPR-VFLPIGLILCAI---VNLFFGF---------STSLWVMAALWALNGIFQGMGW 101 (379)
T ss_pred HHHHHHHHHHhhhhhhhHHHHhhCCe-ehhHHHHHHHHH---HHHHHHH---------hhhHHHHHHHHHHHHhhccccC
Confidence 5678889999988887753 222222 333222222222 1222221 1244566777788899888888
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGS 169 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs 169 (179)
.....+.++..+++||..+..+.......|..+|.
T Consensus 102 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 136 (379)
T TIGR00881 102 PPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLP 136 (379)
T ss_pred CchHHHHHHhcCHhhheeeEeehhccchhHHHHHH
Confidence 88888888888888888877777777777777776
No 39
>KOG2504|consensus
Probab=91.72 E-value=0.87 Score=41.78 Aligned_cols=99 Identities=20% Similarity=0.309 Sum_probs=62.6
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
+..+-++.|.+||.+..+. ..+..+.+++..+++....+-.++ +. +-++-+..+..-.++|++-|+..
T Consensus 338 l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~--~p---------~~~~~~~l~~~~~~fG~~~g~~~ 406 (509)
T KOG2504|consen 338 LLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLF--LP---------FATTYVGLIVFSILFGFCVGSFS 406 (509)
T ss_pred HHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHH--HH---------HhccHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999975 444334455555555554443322 21 11233677888889999999999
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGL 165 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl 165 (179)
++.-....+.+..++-..|-.+..++...+.
T Consensus 407 ~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~ 437 (509)
T KOG2504|consen 407 SLTPVILVDLVGLEKLSNAYGLLLLFQGIGA 437 (509)
T ss_pred HHHHHHHHHHcChhhcchHHHHHHHHhHHHH
Confidence 9988777777765444433333333333333
No 40
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=91.69 E-value=1.3 Score=36.67 Aligned_cols=109 Identities=14% Similarity=0.120 Sum_probs=55.6
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
.....++++..+|+.+..+. ++...+++........=....-+..+.. .+ ..+.+...+..+++|...+-.
T Consensus 256 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~g~~~~~~ 327 (379)
T TIGR00881 256 WAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL-NP-------AANPLMDLICLFALGFLVYGP 327 (379)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc-Cc-------chhHHHHHHHHHHHHHHHhhh
Confidence 35678899999999988753 2111122222111110111111111111 11 123344445555566543323
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL 171 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~ 171 (179)
......+..+.+++++|..+..+....-..|..+|..+
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 365 (379)
T TIGR00881 328 QMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLP 365 (379)
T ss_pred hHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhh
Confidence 33333455667778888888888877777777776544
No 41
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=91.59 E-value=1.9 Score=37.72 Aligned_cols=104 Identities=20% Similarity=0.291 Sum_probs=68.7
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....|.++..+|..+..+. +.-++ ++.+.... +++.-..++|.. -+|-+..++..++.|+..|...
T Consensus 42 ~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~---~~~~~~~~~~~~---------~~~~~~l~~~~~~~G~~~~~~~ 108 (485)
T TIGR00711 42 VITSYMLANAISIPLTGWLAKRFGT-RRLFLIST---FAFTLGSLLCGV---------APNLELMIIFRVIQGFGGGPLI 108 (485)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCc-HHHHHHHH---HHHHHHHHHHhC---------cCCHHHHHHHHHHHHhhhhhHH
Confidence 4567888888887776653 22222 23332222 233333333432 1344566777888899999999
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
.....+.++..++++|..+-.+.......|..+|..++
T Consensus 109 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 146 (485)
T TIGR00711 109 PLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLG 146 (485)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccH
Confidence 99999999999999998888887777777777776554
No 42
>PRK10091 MFS transport protein AraJ; Provisional
Probab=91.57 E-value=3.2 Score=35.52 Aligned_cols=101 Identities=18% Similarity=0.147 Sum_probs=58.1
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....++++-.+|.....+. +..+ +++.+... -.+.....+++... +|-+...+..++.|+..|-..
T Consensus 43 ~~s~~~~~~~~~~~~~g~l~dr~g-~r~~~~~~---~~~~~~~~~l~~~~---------~~~~~l~~~r~l~G~~~~~~~ 109 (382)
T PRK10091 43 MISYYALGVVVGAPIIALFSSRYS-LKHILLFL---VALCVIGNAMFTLS---------SSYLMLAIGRLVSGFPHGAFF 109 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCc-cHHHHHHH---HHHHHHHHHHHHHh---------CcHHHHHHHHHHHHhhhHHHH
Confidence 5678899999998887763 2222 22333222 22233333334321 345666777888899888766
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGS 169 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs 169 (179)
........+..++++|..+-.+.......|..+|.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 144 (382)
T PRK10091 110 GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGI 144 (382)
T ss_pred HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhc
Confidence 66666666666666666554444444444444443
No 43
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=91.52 E-value=1.4 Score=36.51 Aligned_cols=105 Identities=13% Similarity=0.013 Sum_probs=57.4
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+++++.+|+....+. +.-+++ +.+....+. .....++....+ + .+.+..+....+.++..|-..
T Consensus 245 ~~~~~~~~~~~~~~~~g~l~dr~g~~-~~~~~~~~~---~~~~~~~~~~~~-~------~~~~~~~~~~~~~g~~~g~~~ 313 (377)
T TIGR00890 245 AVSISSIFNGGGRPFLGALSDKIGRQ-KTMSIVFGI---SAVGMAAMLFIP-M------LNDVLFLATVALVFFTWGGTI 313 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHH---HHHHHHHHHHcc-c------chhHHHHHHHHHHHHHhccch
Confidence 5678889999999887763 221122 222111111 111111111111 0 123334455566777777666
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL 171 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~ 171 (179)
+....+.++..++++|..+-.+.......|..+|..+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~ 350 (377)
T TIGR00890 314 SLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLI 350 (377)
T ss_pred hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 6655566677777777776666666667777666654
No 44
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=91.51 E-value=4.6 Score=34.51 Aligned_cols=104 Identities=19% Similarity=0.113 Sum_probs=68.1
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++..+|.....+. +.-+++ +.+ ... -++.....+++.. .++.+...+..++.|+..|...
T Consensus 55 ~~~~~~~~~~~~~~~~g~l~dr~g~r-~~~-~~~--~~~~~~~~~~~~~---------~~~~~~~~~~~~l~G~~~~~~~ 121 (406)
T PRK11551 55 AFSAGILGLLPGALLGGRLADRIGRK-RIL-IVS--VALFGLFSLATAQ---------AWDFPSLLVARLLTGVGLGGAL 121 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCc-hhH-HHH--HHHHHHHHHHHHH---------hccHHHHHHHHHHHHhhHHHHH
Confidence 5678888888888877653 222222 322 222 2233333333332 2355666777888899988888
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
.....+..+..++|+|..+-.+.......|..+|..++
T Consensus 122 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 159 (406)
T PRK11551 122 PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIG 159 (406)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888889998888877777777777776655
No 45
>PRK10489 enterobactin exporter EntS; Provisional
Probab=91.46 E-value=1.6 Score=37.83 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 117 LVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 117 ~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+...+..++.|+..|...+......|+.++++++..+..+.......|..+|..++
T Consensus 111 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~ 166 (417)
T PRK10489 111 LAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALG 166 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHH
Confidence 44556667778888887777777888999998888888887777777777777665
No 46
>KOG0569|consensus
Probab=91.15 E-value=2.6 Score=38.68 Aligned_cols=104 Identities=17% Similarity=0.218 Sum_probs=77.4
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHH----HHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFM----PLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSN 130 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fi----Plf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tn 130 (179)
...+|-+|-.+|-+...+. ...+++ ..+ .+ |.++. .++.+|. ..++-...++-=++.|+..
T Consensus 65 ~vs~f~iG~~~Gs~~~~~la~~~GRK-~~l-~~---~~~l~~~~~~~~~~s~---------~~~~~e~li~GR~i~Gl~~ 130 (485)
T KOG0569|consen 65 IVSIFFIGGMIGSFSSGLLADRFGRK-NAL-LL---SNLLAVLAALLMGLSK---------SAPSFEMLILGRLIVGLAC 130 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcch-HHH-HH---HHHHHHHHHHHHHHHH---------HhhhHHHHHHHHHHHHHHh
Confidence 5788999999999988764 333232 222 22 33332 2223232 2456567788888999999
Q ss_pred hhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 131 GYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL 173 (179)
Q Consensus 131 Gyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~ 173 (179)
|-..+...||--|..|++.|...|.+..++.+.|..+|..++.
T Consensus 131 gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l 173 (485)
T KOG0569|consen 131 GLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL 173 (485)
T ss_pred HHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999987764
No 47
>KOG3880|consensus
Probab=91.08 E-value=1 Score=39.63 Aligned_cols=107 Identities=21% Similarity=0.325 Sum_probs=72.7
Q ss_pred HHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhh--hhhh
Q psy1201 58 LVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNG--YLAN 135 (179)
Q Consensus 58 ~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnG--yl~t 135 (179)
..|++|=++.|..-+..+.| . ++.++++.++=.-.|++-..- -+-++.|..+++++.=|+-.| |++|
T Consensus 295 vlYQlGVFiSRSS~~~~~~p--~---l~~LailQ~vNl~ff~~~a~~------~ftpsi~ivf~lI~~EGLlGGasYVNT 363 (409)
T KOG3880|consen 295 VLYQLGVFISRSSINLFTMP--Y---LWLLAILQFVNLLFFLLQAWY------WFTPSIWIVFALILFEGLLGGASYVNT 363 (409)
T ss_pred eeeeeeEEEEeccceEEech--H---HHHHHHHHHHHHHHHHHHHHH------HhccHHHHHHHHHHHHhhcCchHHHHH
Confidence 48999999999999988886 2 335566666544444433221 112344555555555466655 4444
Q ss_pred hhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1201 136 ITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFKDY 177 (179)
Q Consensus 136 l~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~~~ 177 (179)
.-.--+++++++||.|=...+.+=+.|+...+++|+.+..
T Consensus 364 --f~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh~ 403 (409)
T KOG3880|consen 364 --FHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLHN 403 (409)
T ss_pred --HHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccchh
Confidence 2333566899999999999999999999999999987754
No 48
>PRK12307 putative sialic acid transporter; Provisional
Probab=91.01 E-value=4.8 Score=34.60 Aligned_cols=103 Identities=14% Similarity=0.085 Sum_probs=62.4
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++-.+|....++. +.-+++ +.+ ... -++......++.. .++-+..++.-++.|+..|-..
T Consensus 58 ~~~~~~~~~~l~~~~~g~l~dr~g~r-~~l-~~~--~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~g~g~~~ 124 (426)
T PRK12307 58 LATAAFIGRPFGGALFGLLADKFGRK-PLM-MWS--IVAYSVGTGLSGL---------ASGVIMLTLSRFIVGMGMAGEY 124 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCh-HHH-HHH--HHHHHHHHHHHHH---------HhHHHHHHHHHHHHHHHHhhHH
Confidence 5667778877777766653 221222 322 221 2222222222221 1244556666778888888777
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL 171 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~ 171 (179)
+....+..+..++|+|..+..+......+|..+|..+
T Consensus 125 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l 161 (426)
T PRK12307 125 ACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYF 161 (426)
T ss_pred HHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHH
Confidence 7777777888888888888777777777777776654
No 49
>TIGR00898 2A0119 cation transport protein.
Probab=90.96 E-value=8.3 Score=34.11 Aligned_cols=107 Identities=10% Similarity=0.050 Sum_probs=55.5
Q ss_pred HHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLAN 135 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~t 135 (179)
......+.+..|+.+..+..-...+++.+.+..+.-.+..-+.... +. .+.+......++.++..+-..+
T Consensus 360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~ 429 (505)
T TIGR00898 360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV---PV-------DLYFLRTALAVLGKFGITSAFQ 429 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc---CC-------CchHHHHHHHHHHHHHHHHHHH
Confidence 4456788888998887653211112222222221111111111111 10 1123444445555555555556
Q ss_pred hhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 136 ITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 136 l~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
....+.++..+++.|..+-.+.+.....|-.+|..+.
T Consensus 430 ~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~ 466 (505)
T TIGR00898 430 MVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLV 466 (505)
T ss_pred HHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHH
Confidence 6777888888888888776666666666666655443
No 50
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=90.81 E-value=4 Score=35.08 Aligned_cols=103 Identities=11% Similarity=0.096 Sum_probs=52.1
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++-.++....+.. +.-++| +++.... .+.....+++.. .++.+..++..++.|+..|...
T Consensus 53 ~~~~~~~~~~~~~~~~G~l~dr~g~r-~~l~~~~---~~~~~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~~ 119 (406)
T PRK15402 53 SMTAYLAGGMFLQWLLGPLSDRIGRR-PVMLAGV---AFFILTCLAILL---------AQSIEQFTLLRFLQGIGLCFIG 119 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCh-HHHHHHH---HHHHHHHHHHHH---------HccHHHHHHHHHHHHhHhhhHH
Confidence 4567888887777766542 221222 3332221 222222222221 1233455666677788887776
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL 171 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~ 171 (179)
........+..+++++..+-.++......|..+|..+
T Consensus 120 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 156 (406)
T PRK15402 120 AVGYAAIQESFEEADAIKITALMANVALLAPLLGPLV 156 (406)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666554334333333444444443
No 51
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=90.79 E-value=4.7 Score=34.55 Aligned_cols=100 Identities=12% Similarity=-0.004 Sum_probs=60.0
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHH---HHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVL---LFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNG 131 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~---~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnG 131 (179)
.+....++..++..+..+. +..+++ +.+. ....+|....+. .++.+..++.+++-|++-|
T Consensus 245 l~~~~~~~~i~~~~~~~~l~~r~g~~-~~l~~~~~~~~~~~~~~~~---------------~~~~~~~~~~q~l~g~~~~ 308 (382)
T TIGR00902 245 LWGIGVLAEIIIFAFSNKLFQNCSAR-DLLLISAIACVGRWAIIGA---------------IEAFPLIFLLQILHCGTFA 308 (382)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhCCHH-HHHHHHHHHHHHHHHHHHh---------------HhhHHHHHHHHHHHHHHHH
Confidence 4566778888887776542 222222 2221 223334332211 2355777888999999999
Q ss_pred hhhhhhhhcccCCCChhhHHH-HHHHHHHHHHHHHHHHHHHH
Q psy1201 132 YLANITFICAAKQVDPHEQEV-ASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 132 yl~tl~m~~ap~~v~~~~~e~-aG~~m~~~l~~Gl~~Gs~~s 172 (179)
-+...+|.+..+. +++++.. -|...+.....|..+|+.++
T Consensus 309 ~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~ 349 (382)
T TIGR00902 309 VCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFA 349 (382)
T ss_pred HHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988876 6555533 22223445566777666554
No 52
>TIGR00893 2A0114 d-galactonate transporter.
Probab=90.74 E-value=2.5 Score=34.95 Aligned_cols=56 Identities=11% Similarity=0.023 Sum_probs=39.4
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL 171 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~ 171 (179)
+.+.......+.+...| .......+..+..++++|..+..+....-..|-.+|..+
T Consensus 311 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i 366 (399)
T TIGR00893 311 IPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIV 366 (399)
T ss_pred hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHH
Confidence 33444445555566666 667777788888888998888887777778777777654
No 53
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=90.72 E-value=3.2 Score=35.99 Aligned_cols=104 Identities=14% Similarity=0.204 Sum_probs=57.6
Q ss_pred HHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLAN 135 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~t 135 (179)
....+.++..+|+.+..+...+..+ +.+....+.-.+. -+.+... -++.+...+..+++|+..|....
T Consensus 257 ~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~-~~~l~~~----------~~~~~~~~~~~~l~G~~~~~~~~ 324 (394)
T PRK10213 257 VLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAVS-ALVLTLW----------GSDKIVATGVAIIWGLTFALVPV 324 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHH-HHHHHHH----------hhhHHHHHHHHHHHHHHHHhhhH
Confidence 5677889999999887764222222 2221111111111 0111111 12345556677888888887777
Q ss_pred hhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 136 ITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 136 l~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
......-+.++ ++++.++........+|..+|+.++
T Consensus 325 ~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~ 360 (394)
T PRK10213 325 GWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIG 360 (394)
T ss_pred HHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544445554 4455666655566677887777654
No 54
>PRK03699 putative transporter; Provisional
Probab=90.54 E-value=2.9 Score=35.96 Aligned_cols=96 Identities=9% Similarity=0.114 Sum_probs=53.0
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++-.+|.....+. +.- .+++.+ .. ...+.....+++.. -++.+...+..++.|+..|...
T Consensus 47 ~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~-~~--~~~~~~i~~~l~~~---------~~~~~~~~~~~~l~G~~~g~~~ 113 (394)
T PRK03699 47 TFTFLNAGILISIFLNAWLMEII-PLKRQL-IF--GFALMILAVAGLMF---------SHSLALFSIAMFVLGVVSGITM 113 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hHHHHH-HH--HHHHHHHHHHHHHH---------cchHHHHHHHHHHHHHhhHhhc
Confidence 4567778888887776653 221 122322 22 23333333333332 1344556677788899888777
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVG 164 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~G 164 (179)
+.+..+.++..++++|..+-.........|
T Consensus 114 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 143 (394)
T PRK03699 114 SIGTFLITHVYEGKQRGSRLLFTDSFFSMA 143 (394)
T ss_pred cchhHHhhhhcccchHHHHHHHHHHHHHHH
Confidence 666666677666666665544443333333
No 55
>PRK03545 putative arabinose transporter; Provisional
Probab=90.36 E-value=4.3 Score=34.73 Aligned_cols=104 Identities=18% Similarity=0.278 Sum_probs=54.5
Q ss_pred HHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLAN 135 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~t 135 (179)
....+.++..+|+....+..-+..+ +.+...... .....+.+-.. -++.+..++..+++|++++..+.
T Consensus 246 ~~~~~~~~~~~g~~~~g~l~dr~~~-~~~~~~~~~--~~~~~~~l~~~---------~~~~~~~~~~~~l~g~~~~~~~~ 313 (390)
T PRK03545 246 LLLLFGGAGIIGSVLFSRLGNRHPS-GFLLIAIAL--LLVCLLLLLPA---------ANSEWHLSVLSIFWGIAIMCIGL 313 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHH--HHHHHHHHHHH---------hchHHHHHHHHHHHHHHHhcchH
Confidence 5677889999999988764222122 222111111 11122211111 12345556677788888776655
Q ss_pred hhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 136 ITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 136 l~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
......-+.. ++++..+-.+.+.....|..+|..++
T Consensus 314 ~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~G~~~~ 349 (390)
T PRK03545 314 AMQVKVLKLA-PDATDVAMALFSGIFNIGIGAGALLG 349 (390)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4434433333 34555554555555677777777663
No 56
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=90.31 E-value=11 Score=33.15 Aligned_cols=107 Identities=13% Similarity=0.076 Sum_probs=68.6
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
.....|.++-.+|....++. +.-.++ +.+....+.-. ..++....... .+-+..++.-++.|+..|-.
T Consensus 80 ~~~s~~~~~~~~~~~~~g~l~dr~g~r-~~l~~~~~~~~-~~~~~~~~~~~---------~~~~~l~~~r~~~G~~~~~~ 148 (465)
T TIGR00894 80 LILSSHFYGQIIIQIPVGYLAGKYVFK-WSIGIGMFLSS-VISIVIPWAAG---------GGIALVVFCRVIQGLAQGSV 148 (465)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHhCcc-hhhHHHHHHHH-HHHHHHHHHHH---------cCchHHHHHHHHHHHhcccc
Confidence 36778888888888777653 222222 33322222111 12221111111 12245566778899999999
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
......+.++..+++||..+..+......+|..+|..++
T Consensus 149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~ 187 (465)
T TIGR00894 149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPIS 187 (465)
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999889999999999999998888888888887777664
No 57
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=90.16 E-value=2.8 Score=41.06 Aligned_cols=107 Identities=18% Similarity=0.046 Sum_probs=61.0
Q ss_pred HHHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
.+...+.++-.+|..+..+..-...+++.+.+..+ ...+-++++.. ..+.+..++..+++|+..|-..
T Consensus 273 ~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~ 340 (1146)
T PRK08633 273 YLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGAL--GLALSLFLLPT----------APSLASVLVLFFLFGFSAGLFI 340 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHH--HHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHhh
Confidence 35677888888898887764221111122211111 11111222111 1244666777888898888777
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL 173 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~ 173 (179)
.....+..+.+++++|..+-.+.++...+|..+|..++.
T Consensus 341 ~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~ 379 (1146)
T PRK08633 341 VPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTT 379 (1146)
T ss_pred HHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 766666667777777777666666666666655544443
No 58
>PRK03699 putative transporter; Provisional
Probab=90.13 E-value=3 Score=35.88 Aligned_cols=100 Identities=10% Similarity=0.088 Sum_probs=49.5
Q ss_pred HHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhh
Q psy1201 57 FLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLAN 135 (179)
Q Consensus 57 ~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~t 135 (179)
...+.++..+||.+..+. ++-+++ +.+......-.+...++..+ ++.++..+..+++|+.+|-..+
T Consensus 247 ~~~~~~~~~ig~~~~g~l~dr~~~~-~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~G~~~~~~~~ 313 (394)
T PRK03699 247 VSNFWMAYMVGMWIFSFIVRFFDLQ-RILTVLAGLALVLMYLFVNT------------DDPSHLLYAILGLGFFSSAIYT 313 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchh-hHHHHHHHHHHHHHHHHHHc------------CCchHHHHHHHHHHHHHHHHHH
Confidence 455666777788776653 221122 33333333333322222111 1333445566778887766656
Q ss_pred hhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy1201 136 ITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSG 170 (179)
Q Consensus 136 l~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~ 170 (179)
.....+++..+++..+..|.+.. +-.+|..+|..
T Consensus 314 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~g~~i~p~ 347 (394)
T PRK03699 314 TIITLGSQQTKVASPKLVNFILT-CGTIGTMLTFV 347 (394)
T ss_pred HHHHHHHHHccCCCHHHHHHHHH-hhhHHHHHHHH
Confidence 66666666655443444454443 33455555543
No 59
>TIGR00901 2A0125 AmpG-related permease.
Probab=90.02 E-value=4.7 Score=33.79 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201 117 LVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFK 175 (179)
Q Consensus 117 ~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~ 175 (179)
+......++.++..+........+.++..++|||..+..+.......|..+|..++..+
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 142 (356)
T TIGR00901 84 PLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVL 142 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555566778889999999999999889999999888877543
No 60
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=89.91 E-value=4.3 Score=34.61 Aligned_cols=108 Identities=16% Similarity=0.254 Sum_probs=72.3
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
.....+.++-.+|....++. +.-++ ++.+ .+. -+++.-..+++...+. ..+-+..++..++.|+..|-.
T Consensus 75 ~~~~~~~~~~~i~~~~~g~l~d~~gr-r~~~-~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~r~l~G~~~~~~ 144 (481)
T TIGR00879 75 LVVSIFLVGGFIGALFAGWLSDRFGR-KKSL-LII--ALLFVIGAILMGLAAF------ALSVEMLIVGRVLLGIGVGIA 144 (481)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhh-HHHH-HHH--HHHHHHHHHHHHHhcc------ccchHHHHHHHHHHHhhhhHH
Confidence 46778888888888887753 22222 2333 222 2233322233322111 112256677888899999888
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
......+..+..++++|..+..+.......|..+|..++
T Consensus 145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 145 SALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 888888888888999999998888888889998888877
No 61
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=89.59 E-value=4.5 Score=34.93 Aligned_cols=108 Identities=11% Similarity=0.095 Sum_probs=57.5
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....|.++..+|..+..+. +.-++| +.+....+.-.+..-++.+-... -.+-+...+.-++.|+..|-..
T Consensus 53 ~~~~~~~~~~i~~~~~g~l~dr~g~k-~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~i~G~g~~~~~ 123 (402)
T TIGR00897 53 AFTLYGIAAAISAWISGVVAEIIGPL-KTMMIGLLLWCVGHAAFIVFGLG--------HANYPLILLFYGIRGLGYPLFA 123 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHHHHHHHHHHhcc--------CccHHHHHHHHHHHHcchHHHH
Confidence 5678888888888877653 222233 33322222222211111111110 0122333445555666655544
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHH-HHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGL-AGGSGLG 172 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl-~~Gs~~s 172 (179)
.......++..+++||..+..+.....+.|. ..|..++
T Consensus 124 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~ 162 (402)
T TIGR00897 124 YSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYS 162 (402)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556677788899888888777777776 3565543
No 62
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=89.32 E-value=4.5 Score=35.50 Aligned_cols=109 Identities=12% Similarity=0.071 Sum_probs=61.5
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
....+..+++.+|+....+. +..+ +++.+....++-.+...++ ....+ . ..+.+..++..++.|++.|-.
T Consensus 255 ~~~~~~~i~~i~~~~~~g~l~dr~g-~r~~l~~~~~~~~v~~~l~--~~~~~-~-----~~~~~~l~l~~~l~g~~~~~~ 325 (418)
T TIGR00889 255 IWMSLSQFSEIFFILTIPFFLKRFG-IKKVMLLSLVAWALRFGFF--AYGDP-E-----YFGYALLFLSMIVYGCAFDFF 325 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHH--HHcCc-c-----hhhHHHHHHHHHHHHHHHHHH
Confidence 35667778888888776643 2222 2233322222222211111 11111 0 012234556778889888887
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHH-HHHHHHHHHHHHHH
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMV-LSLGVGLAGGSGLG 172 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~-~~l~~Gl~~Gs~~s 172 (179)
......+..+..++++|..+-.+.. ....+|..+|..++
T Consensus 326 ~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~ 365 (418)
T TIGR00889 326 NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILS 365 (418)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777788888888888877766664 45566777776554
No 63
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=89.20 E-value=7 Score=32.69 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=55.6
Q ss_pred HHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLAN 135 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~t 135 (179)
....++++..+|+.+..+..-+..+++.+....+.-.+...++..... +. ..+.+......++.|+.+|-...
T Consensus 247 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~ 319 (385)
T TIGR00710 247 LFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAI-LG------LGSWAMIIGPMMFVGIGNSMISS 319 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-hc------cchHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999998876422112223222222222222222222111 00 01223345556778888888888
Q ss_pred hhhhcccCCCChhhHHH-HHHHHHHHHHHHHHHHHHHH
Q psy1201 136 ITFICAAKQVDPHEQEV-ASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 136 l~m~~ap~~v~~~~~e~-aG~~m~~~l~~Gl~~Gs~~s 172 (179)
..+.+..+..+ +++.. .|.........|...|..++
T Consensus 320 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 320 IAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887776654 34433 33334444445555555554
No 64
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=88.91 E-value=4.2 Score=40.17 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=52.5
Q ss_pred cchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1201 114 TSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF 174 (179)
Q Consensus 114 ~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~ 174 (179)
++-+..++..++.|+.++......+...|+.++++++..|-.++....++|..+|..++=.
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~ 166 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGL 166 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4557778889999999999999999999999999999999888888888888888776644
No 65
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=88.57 E-value=10 Score=32.29 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=56.5
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++..+|....++. +.-+++ +.+.. ..++.....+++... ++-+...+..++.|+..|...
T Consensus 48 ~~~~~~~~~~~~~~~~G~l~Dr~grr-~~~~~---~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~~~~ 114 (394)
T PRK11652 48 VMAAYLLTYGLSQLFYGPLSDRVGRR-PVILV---GMSIFILGTLVALFA---------HSLTVLIAASAIQGLGTGVGG 114 (394)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcCCh-HHHHH---HHHHHHHHHHHHHHH---------ccHHHHHHHHHHHHhhhhHHH
Confidence 4567778887777766543 222232 33322 233333333333221 234555666777888888776
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL 171 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~ 171 (179)
..+....++..+++++..+..........|..+|..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 151 (394)
T PRK11652 115 VMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLI 151 (394)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666677777666555555555555544443
No 66
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=88.52 E-value=5.8 Score=34.17 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 119 YATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL 173 (179)
Q Consensus 119 ~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~ 173 (179)
..+..++.++.+.......-.+.++..+++||..++.+.......|..+|+.++.
T Consensus 97 l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~ 151 (402)
T PRK11902 97 LAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLAL 151 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444455565555555566667888889999999999988887888877776553
No 67
>PRK03545 putative arabinose transporter; Provisional
Probab=88.51 E-value=9.5 Score=32.58 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=45.1
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL 173 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~ 173 (179)
|-+...+.-++.|+.+|-..+....+.++..++|||..+-.+.......|..+|..++-
T Consensus 96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~ 154 (390)
T PRK03545 96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGR 154 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 44566666778899998887777777888888888888877777777777777766553
No 68
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=88.03 E-value=6.9 Score=37.72 Aligned_cols=105 Identities=14% Similarity=0.083 Sum_probs=66.9
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
+...+.+|-.+|..+.++. ..-+ +++.+.... +++....+++.. -++-+..++.-++.|+..|-..
T Consensus 207 l~s~~~lG~iiG~li~G~LsDR~G-RR~~lii~l---il~~i~~ll~af---------a~s~~~llv~R~l~G~g~g~~~ 273 (742)
T TIGR01299 207 LGLIVYLGMMVGAFFWGGLADKLG-RKQCLLICL---SVNGFFAFFSSF---------VQGYGFFLFCRLLSGFGIGGAI 273 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-cHHHHHHHH---HHHHHHHHHHHH---------HhhHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888887764 2212 223332222 222222222221 1344666777888899888888
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL 173 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~ 173 (179)
..+..+..+..++++|..+-.++..+..+|..+|..++.
T Consensus 274 p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~ 312 (742)
T TIGR01299 274 PIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAW 312 (742)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888777777777777777776553
No 69
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=87.46 E-value=1.9 Score=35.89 Aligned_cols=104 Identities=11% Similarity=0.072 Sum_probs=54.2
Q ss_pred HHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHH-HHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVF-MPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~f-iPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++..+|+.+..+..-+..+++.+......-.+. .+++.... .+ .+-+...+..++.++..|-..
T Consensus 260 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~g~~~~~~~ 330 (394)
T TIGR00883 260 VLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL-DS--------GSFTLFFFLVLGLALIGGMYT 330 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-cC--------CchHHHHHHHHHHHHHHHHHh
Confidence 466788889988887765311111223232222222211 12221111 00 122445566777888888888
Q ss_pred hhhhhcccCCCChhhHHHHHHH-HHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAM-MVLSLGVGLAGG 168 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~-m~~~l~~Gl~~G 168 (179)
+......++..++++|..+-.+ ..+.-..|-.+|
T Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~ 365 (394)
T TIGR00883 331 GPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFA 365 (394)
T ss_pred hhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHH
Confidence 8888888888887777654333 333333444333
No 70
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=87.40 E-value=11 Score=32.97 Aligned_cols=104 Identities=12% Similarity=0.095 Sum_probs=61.1
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....|.++-.+|....++. +.-+++ +.+ .. .-+++....++|... ++-+...+.-++.|+..|...
T Consensus 56 ~~s~~~~~~~~~~~~~G~l~dr~Grr-~~l-~~--~~~~~~~~~~~~~~a---------~~~~~l~~~r~l~Gi~~~~~~ 122 (413)
T PRK15403 56 SVSLYLAGGMALQWLLGPLSDRIGRR-PVL-IT--GALIFTLACAATLFT---------TSMTQFLIARFIQGTSICFIA 122 (413)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHcCch-HHH-HH--HHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888876642 222233 333 22 234444444444421 344566777788899888877
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+......++..+++|+.++-.+.......|-.+|..++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg 160 (413)
T PRK15403 123 TVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSG 160 (413)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666667777776665554455555555555544
No 71
>PRK10504 putative transporter; Provisional
Probab=87.40 E-value=5.6 Score=34.89 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=41.7
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+.+..++..++.|+..|-..........+..+++++..+-.+....-+.|-.+|..++
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 154 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALG 154 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4456677788899999888777777777777888877766666666666666665543
No 72
>PRK03893 putative sialic acid transporter; Provisional
Probab=87.17 E-value=14 Score=32.55 Aligned_cols=104 Identities=12% Similarity=0.142 Sum_probs=60.6
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++-.+|....++. ..-+ +++.+.. .-++.....+++.. -+|-+...+..++.|+..|-..
T Consensus 60 ~~~~~~~~~~~~~~~~g~l~dr~g-~r~~~~~---~~~~~~~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~~ 126 (496)
T PRK03893 60 LISAAFISRWFGGLLLGAMGDRYG-RRLAMVI---SIVLFSVGTLACGF---------APGYWTLFIARLVIGMGMAGEY 126 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-cHHHHHH---HHHHHHHHHHHHHH---------HhHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777666543 2212 2233322 22333222222221 1234556677778888887766
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
.....+..+..++++|..+-.+......+|-.+|..++
T Consensus 127 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 164 (496)
T PRK03893 127 GSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY 164 (496)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777888888888776676666667766666544
No 73
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=87.07 E-value=9.2 Score=35.23 Aligned_cols=106 Identities=20% Similarity=0.122 Sum_probs=67.1
Q ss_pred HHHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
.+...+.+|-.+|-.+..+.+....+.+.+.... +++-...+.-. +.++-|..++.+++.|.+.....
T Consensus 258 ll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~---~~~a~~~~~la---------l~~~~~~~~~~l~l~G~~~~~~~ 325 (524)
T PF05977_consen 258 LLLAAFGVGAILGALLLPRLRRRLSSRRLVLLAS---LLFALALLLLA---------LSPSFWLALIALFLAGAAWIIAN 325 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHH---HHHHHHHHHHh---------cchHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999998775433222223222111 12211111111 12455677788888888888777
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+......=+.++++.|.++-.+.......|..+|+++.
T Consensus 326 ~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~ 363 (524)
T PF05977_consen 326 SSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLW 363 (524)
T ss_pred HHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666667888888887777777777777777654
No 74
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=86.52 E-value=9.8 Score=31.72 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=33.9
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+.+...+...+.|+..|......+.+..+..++ ++..+-.+.......|..+|..++
T Consensus 287 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~ 343 (375)
T TIGR00899 287 SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVG 343 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566677888887776666666555443 344444444555556776666543
No 75
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=85.99 E-value=11 Score=32.15 Aligned_cols=58 Identities=14% Similarity=-0.030 Sum_probs=36.4
Q ss_pred cchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 114 TSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL 171 (179)
Q Consensus 114 ~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~ 171 (179)
++.+..++..++.|++.|......+.+..+..++|+....|....+....|..+|..+
T Consensus 291 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i 348 (382)
T PRK11128 291 TALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVL 348 (382)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667788999999998888888777666433433333433334444565555543
No 76
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=85.79 E-value=8.9 Score=32.17 Aligned_cols=103 Identities=9% Similarity=0.082 Sum_probs=49.5
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHH-HHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISR-FVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R-~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
....+.++..+|+.+..+. +.. .+++.+....+.= ...++++.. . ++.+...+..++.++..+-.
T Consensus 279 ~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~~~~~~~~~~~~ 345 (405)
T TIGR00891 279 IVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPVFAI---G---------ANVAVLGLGLFFQQMLVQGI 345 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHHHh---C---------CchHHHHHHHHHHHHHHccc
Confidence 4567888999999887763 221 1223222221111 111222111 1 12233333334444433333
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL 171 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~ 171 (179)
.+....+-++..++++|..+-.+.......|..+|..+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~ 383 (405)
T TIGR00891 346 WGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPII 383 (405)
T ss_pred hhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHH
Confidence 34444455666677777766555555556666666544
No 77
>PRK03633 putative MFS family transporter protein; Provisional
Probab=84.50 E-value=8.6 Score=32.79 Aligned_cols=105 Identities=10% Similarity=0.075 Sum_probs=58.8
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
.....+.++..+|.....+. +..++ ++.+... =++.....+++.. .+|-+...+..++.|++.|-.
T Consensus 45 ~~~s~~~l~~~~~~~~~g~l~dr~g~-k~~~~~~---~~~~~~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~ 111 (381)
T PRK03633 45 VVSSSYFTGNLVGTLLAGYVIKRIGF-NRSYYLA---SLIFAAGCAGLGL---------MVGFWSWLAWRFVAGIGCAMI 111 (381)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHH---------hccHHHHHHHHHHHHHHHHHH
Confidence 46788899999988877653 22112 2222111 1222333333332 234455666777888888765
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
........-+..++++|..+-.......+.|..+|..++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 150 (381)
T PRK03633 112 WVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLV 150 (381)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333333445666776665565566677777776655
No 78
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=84.26 E-value=18 Score=31.74 Aligned_cols=101 Identities=15% Similarity=0.082 Sum_probs=51.0
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++..+|....++. +.-+++ +++.... ++.....+++...+.. -.+-+..++..++.|+..|...
T Consensus 68 ~~~~~~i~~~~~~~~~G~l~Dr~g~k-~~l~~~~---~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~l~gi~~g~~~ 138 (452)
T PRK11273 68 ALSGISIAYGFSKFIMGSVSDRSNPR-VFLPAGL---ILAAAVMLFMGFVPWA-----TSSIAVMFVLLFLCGWFQGMGW 138 (452)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCCc-hhHHHHH---HHHHHHHHHHHhhhcc-----cccHHHHHHHHHHHHHHHhccc
Confidence 5677888888888777653 222233 3332222 2222222222221100 0133444555667787777554
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGL 165 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl 165 (179)
........+..++++|..+-.+.....+.|.
T Consensus 139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 169 (452)
T PRK11273 139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGG 169 (452)
T ss_pred hHHHHHHHHhCChHHHHHHHHHHHHHHHhhh
Confidence 4333444555677777776666555555543
No 79
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=84.08 E-value=6.2 Score=36.36 Aligned_cols=82 Identities=13% Similarity=0.186 Sum_probs=58.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHH
Q psy1201 80 NGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVL 159 (179)
Q Consensus 80 ~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~ 159 (179)
+++.+...-+.|.+..-...+..... ..+-|..+++.++.|..+......-...-|+.|+++|-+.|-.+++.
T Consensus 74 rrrili~~~~~~~~~~~~L~~l~~~~-------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~ 146 (524)
T PF05977_consen 74 RRRILILSQLLRALVALLLAVLAFFG-------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSI 146 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHH
Confidence 34555556666765543333333221 13557778889999999999999999999999999998888888888
Q ss_pred HHHHHHHHH
Q psy1201 160 SLGVGLAGG 168 (179)
Q Consensus 160 ~l~~Gl~~G 168 (179)
..+..-.+|
T Consensus 147 ~~niar~iG 155 (524)
T PF05977_consen 147 SFNIARIIG 155 (524)
T ss_pred HHHHHHhcc
Confidence 777655544
No 80
>PRK11663 regulatory protein UhpC; Provisional
Probab=83.87 E-value=19 Score=31.44 Aligned_cols=103 Identities=13% Similarity=0.062 Sum_probs=57.6
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++-.+|+...++. ..-+++ +.+ ... =++.....+++.. .++-+...+.-++.|+..|-..
T Consensus 63 ~~~~~~~~~~~~~~~~G~l~dr~g~r-~~~-~~~--~~~~~~~~~~~~~---------~~~~~~l~~~~~l~g~~~g~~~ 129 (434)
T PRK11663 63 LATLFYITYGVSKFVSGIVSDRSNAR-YFM-GIG--LIATGIINILFGF---------SSSLWAFALLWVLNAFFQGWGW 129 (434)
T ss_pred HHHHHHHHHHHHHhhhhHHHhhcCCc-hhH-HHH--HHHHHHHHHHHHH---------HhHHHHHHHHHHHHHHHHHccc
Confidence 4567788887777776653 121222 222 221 2222222222221 1233444455566777777655
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL 171 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~ 171 (179)
.....+..+..+++||..+-.+.......|..+|..+
T Consensus 130 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~ 166 (434)
T PRK11663 130 PVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLV 166 (434)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666777788888888777777777777776553
No 81
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=83.40 E-value=17 Score=31.11 Aligned_cols=57 Identities=14% Similarity=-0.004 Sum_probs=37.2
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+.++..+.+.++|+..|...+..+... ...+++++..+..++++.-..|..+|+.++
T Consensus 308 ~~~~~~~~~~~~g~g~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 364 (406)
T PRK15402 308 AYLWLTAGLSLYAFGIGLANAGLYRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELS 364 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHH-hhhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888887765554433 233456777777777777777777776554
No 82
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=83.36 E-value=12 Score=36.90 Aligned_cols=60 Identities=8% Similarity=-0.017 Sum_probs=46.0
Q ss_pred cchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 114 TSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL 173 (179)
Q Consensus 114 ~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~ 173 (179)
.+.|..++..+++|+..|..........-+.++++++..+..+.++....|..+|+.+.-
T Consensus 332 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g 391 (1140)
T PRK06814 332 RHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILA 391 (1140)
T ss_pred cccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHH
Confidence 566777788888999888887776666667778888888877777777777777776543
No 83
>PRK10504 putative transporter; Provisional
Probab=83.29 E-value=15 Score=32.24 Aligned_cols=54 Identities=9% Similarity=0.175 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 119 YATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 119 ~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
..+..++.|+..|-..+......++.++++++..+..+.++.-.+|..+|..++
T Consensus 356 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~ 409 (471)
T PRK10504 356 LPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIA 409 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777677777888888888888888888888887776554
No 84
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=82.90 E-value=29 Score=29.76 Aligned_cols=110 Identities=17% Similarity=0.149 Sum_probs=57.9
Q ss_pred HHHHHHHHhhhhhhhhhhcc--cCC---CCChhHHHHHH-HHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL--QWP---RNNGWWVLLFS-ISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGL 128 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~--~~~---~~~~~~l~~~~-~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~ 128 (179)
.......+.|.++.-+.++. +.+ .+++.++.... ..-+.++. +...|.. +. ...-++..+..++++.
T Consensus 39 ~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~----~~~~~~~--~~-~~~~~~~~~~~~~~~~ 111 (437)
T TIGR00792 39 TLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVL----LFTTPDF--SA-TGKLVYAYITYILLGL 111 (437)
T ss_pred HHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHH----HHhCCCC--Cc-chHHHHHHHHHHHHHH
Confidence 36778888898888776653 111 12233443222 22222222 2222211 00 0122455555566676
Q ss_pred hhhhhhhhhhhcccCCC-ChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 129 SNGYLANITFICAAKQV-DPHEQEVASAMMVLSLGVGLAGGSGL 171 (179)
Q Consensus 129 tnGyl~tl~m~~ap~~v-~~~~~e~aG~~m~~~l~~Gl~~Gs~~ 171 (179)
..+....-.....++.. +++||..+........+.|..+++.+
T Consensus 112 ~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~ 155 (437)
T TIGR00792 112 FYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVI 155 (437)
T ss_pred HHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555555667765 57888887777666666665554443
No 85
>PRK03633 putative MFS family transporter protein; Provisional
Probab=82.87 E-value=22 Score=30.20 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=32.8
Q ss_pred HHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 121 TIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 121 ~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
....+++...+=.....+...-+..+++++..+......+.++|-.+|..++
T Consensus 290 ~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~ 341 (381)
T PRK03633 290 PALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFT 341 (381)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666665544556666666777776666665555566677777776544
No 86
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=82.65 E-value=16 Score=35.25 Aligned_cols=103 Identities=9% Similarity=-0.030 Sum_probs=60.1
Q ss_pred HHHHHHHhhhhhhhhhhcc--cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL--QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~--~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
...+.+++.++|..++.+. ++. +++.+....++=. +-.+++. . .++.+..++..+++++..+-.
T Consensus 600 ~~~l~~l~~i~G~il~g~L~Dr~G--Rr~~l~~~~~lsa--i~~ll~~-~---------~~s~~~ll~~~~l~g~~~~~~ 665 (742)
T TIGR01299 600 VNFLGTLAVLPGNIVSALLMDKIG--RLRMLAGSMVLSC--ISCFFLS-F---------GNSESAMIALLCLFGGLSIAA 665 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHH--HHHHHHH-H---------HccHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999874 332 2233322221111 1111111 1 123344444455556544434
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
.+....+.++..+.++|..+-.+....-.+|..+|..++
T Consensus 666 ~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~ 704 (742)
T TIGR01299 666 WNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIF 704 (742)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888999998887777777777777777664
No 87
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=81.75 E-value=18 Score=30.16 Aligned_cols=18 Identities=0% Similarity=-0.147 Sum_probs=11.7
Q ss_pred HHHHHHHhhhhhhhhhhc
Q psy1201 56 AFLVFSVCDYLGRFIAGY 73 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~ 73 (179)
....+.+++.++......
T Consensus 38 ~~~~~~~~~~~~~~~~g~ 55 (375)
T TIGR00899 38 FYTGSAIVGIAVSQLLAT 55 (375)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456777777777665543
No 88
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=81.67 E-value=25 Score=30.67 Aligned_cols=114 Identities=9% Similarity=0.023 Sum_probs=68.8
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccch----hHHHHHHHHHHhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSD----LVYATIVLLMGLS 129 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d----~~~~~~~~lfg~t 129 (179)
.....+++|=.+|-.+.++. ..-+ +++.+.... +++.-..+.+....-.. +....++ +..++.=++.|+.
T Consensus 59 ~~~s~~~ig~~~~~~~~G~l~dr~G-rr~~~~~~~---~l~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~R~l~G~~ 133 (479)
T PRK10077 59 FCVASALIGCIIGGALGGYCSNRFG-RRDSLKIAA---VLFFISALGSAWPEFGF-TSIGPDNTGYVPEFVIYRIIGGIG 133 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHH---HHHHHHHHHHHhhcccc-ccccccchhHHHHHHHHHHHHhhh
Confidence 36788888888888877653 2211 223332222 12222222333211000 0001112 2334556788999
Q ss_pred hhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 130 NGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL 173 (179)
Q Consensus 130 nGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~ 173 (179)
.|-....++.+..+..+++||..+..+.......|..++..++.
T Consensus 134 ~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~ 177 (479)
T PRK10077 134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNY 177 (479)
T ss_pred HhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888888888777766544
No 89
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=81.36 E-value=30 Score=29.75 Aligned_cols=106 Identities=14% Similarity=0.086 Sum_probs=54.6
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHH-HHHHHHHH-HHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLL-FSISRFVF-MPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGY 132 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~-~~~~R~~f-iPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGy 132 (179)
....+.++..+|+....+. +..+++ +.+.. ..++-.+. +.+...-. . .-++.+...+..+++|+..|-
T Consensus 262 ~~~~~~~~~~ig~~~~g~l~dr~~~~-~~~~~~~~l~~~~~~~~l~~~~~-~-------~~~~~~~~~~~~~~~G~~~~~ 332 (402)
T TIGR00897 262 IWGTFFFTNIVFNVIFGIVGDKLGWM-NTVRWFGGVGCGIFTLALYYIPQ-H-------FGHSFAVALIIAIALGIFLAG 332 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHH-c-------cCCcHHHHHHHHHHHHHHHHH
Confidence 4456788999999987764 221122 22211 11112111 11111110 0 013455666677778877775
Q ss_pred hhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 133 LANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 133 l~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
...... ..+ ..++++|..+-.+.......|..+|..++
T Consensus 333 ~~~~~~-~~~-~~~~~~~g~~~g~~~~~~~lg~~~gp~i~ 370 (402)
T TIGR00897 333 YVPLAA-VFP-TLAPKHKGAAMSVLNLSAGLSAFLAPAIA 370 (402)
T ss_pred HHHHHH-HHH-hhCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 544322 222 34556777777777777777776666543
No 90
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=81.32 E-value=25 Score=30.75 Aligned_cols=60 Identities=7% Similarity=-0.064 Sum_probs=46.0
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF 174 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~ 174 (179)
+-+...+..++.|+.+|.+.+....+..+..++++++.+-.+.....++|..+|..++-.
T Consensus 93 ~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~ 152 (410)
T TIGR00885 93 NYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQ 152 (410)
T ss_pred cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777888999999988877777777777778877777777778888888766543
No 91
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=81.19 E-value=22 Score=30.70 Aligned_cols=53 Identities=15% Similarity=0.058 Sum_probs=44.1
Q ss_pred HHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 120 ATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 120 ~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
.+.-++.|+..|......+.+.|+.+++|||..+-.++......|..+|..++
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lg 144 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLG 144 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456789999999999999999999999999888888888887777776654
No 92
>PRK09669 putative symporter YagG; Provisional
Probab=80.33 E-value=33 Score=29.98 Aligned_cols=58 Identities=14% Similarity=0.239 Sum_probs=38.4
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHH----HHH---HHHHHHHHHHHHHHHHHH
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQE----VAS---AMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e----~aG---~~m~~~l~~Gl~~Gs~~s 172 (179)
+.+...+..++.|+..|-...+.....++.+|.+|.+ ..| .+.+++..+|..+|..++
T Consensus 318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~ 382 (444)
T PRK09669 318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVV 382 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777889998888777777777777644432 223 355566678888876554
No 93
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=80.19 E-value=19 Score=32.04 Aligned_cols=18 Identities=6% Similarity=0.117 Sum_probs=13.7
Q ss_pred HHHHHHHhhhhhhhhhhc
Q psy1201 56 AFLVFSVCDYLGRFIAGY 73 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~ 73 (179)
.....+++..+|+.+..+
T Consensus 291 ~~~~~~~~~~~~~~~~g~ 308 (490)
T PRK10642 291 IIIAIMIGMLFVQPVMGL 308 (490)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456778899988887765
No 94
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=79.92 E-value=17 Score=30.05 Aligned_cols=57 Identities=18% Similarity=0.072 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201 119 YATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFK 175 (179)
Q Consensus 119 ~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~ 175 (179)
.++.-++.|+..|-..+....+..+..++++|..+..........|..+|..++..+
T Consensus 99 ~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~ 155 (394)
T TIGR00883 99 LLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLL 155 (394)
T ss_pred HHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777766666667777888888998888888888888888887765443
No 95
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=78.17 E-value=37 Score=28.36 Aligned_cols=19 Identities=5% Similarity=0.125 Sum_probs=16.0
Q ss_pred HHHHHHHhhhhhhhhhhcc
Q psy1201 56 AFLVFSVCDYLGRFIAGYL 74 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~ 74 (179)
....+.++..+||....+.
T Consensus 237 ~~~~~~~~~i~~~~~~g~l 255 (355)
T TIGR00896 237 LLALMQLAQAASALLIPAL 255 (355)
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 5678899999999998764
No 96
>KOG0255|consensus
Probab=76.85 E-value=49 Score=29.61 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=73.6
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
....+|.+|..+|-.+-+.. ..- .||.++..+. ++.+..=+.+. +-+|-+.++++-++-|++.+=.
T Consensus 122 ~~~s~~~~G~~vG~~i~g~lsD~~--GRk~~~~~~~--~~~~i~~~~~a---------~a~~~~~~~~~Rfl~G~~~~~~ 188 (521)
T KOG0255|consen 122 LGQSLFFLGVLVGSLIFGPLSDRF--GRKPVLLVSL--LLFIIFGILTA---------FAPNYWMFLIFRFLSGFFGSGP 188 (521)
T ss_pred HHHHHHHHHHHHHHhhheehHhhc--ccHHHHHHHH--HHHHHHHHHHH---------HhCcHHHHHHHHHHHHhhccch
Confidence 36789999999999988653 222 2233323331 11111112232 2346678899999999999999
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFK 175 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~ 175 (179)
.+.+..+.-+.+++++|..++.+..+....|...-...+++.
T Consensus 189 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~ 230 (521)
T KOG0255|consen 189 LTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYIT 230 (521)
T ss_pred hHHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999996666666666655555543
No 97
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=76.48 E-value=17 Score=30.75 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=31.5
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+.+...+..++.|+.+|-..........+..+++++...-.+....-..|..+|..++
T Consensus 310 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~ 367 (408)
T PRK09874 310 TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMG 367 (408)
T ss_pred cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHH
Confidence 4455566677788888766555444444444545444433344444455555555543
No 98
>PRK11663 regulatory protein UhpC; Provisional
Probab=76.14 E-value=34 Score=29.82 Aligned_cols=19 Identities=26% Similarity=0.646 Sum_probs=15.9
Q ss_pred HHHHHHHhhhhhhhhhhcc
Q psy1201 56 AFLVFSVCDYLGRFIAGYL 74 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~ 74 (179)
....++++-.+||.+..+.
T Consensus 284 ~~~~~~~~~~~g~~~~g~l 302 (434)
T PRK11663 284 AVSMFELGGFIGALVAGWG 302 (434)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 5678889999999998864
No 99
>PRK11043 putative transporter; Provisional
Probab=75.74 E-value=45 Score=28.36 Aligned_cols=101 Identities=13% Similarity=-0.032 Sum_probs=47.7
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++-.+|....++. +.-+++ +.+.... .+.....+++... ++-+...+..++.|+..|-..
T Consensus 46 ~~s~~~~~~~~~~~~~g~l~dr~g~r-~~~~~~~---~~~~~~~~~~~~~---------~~~~~l~~~~~l~G~~~~~~~ 112 (401)
T PRK11043 46 SLSLFLAGFALGQLLWGPLSDRYGRK-PVLLAGL---SLFALGSLGMLWV---------ESAAQLLVLRFVQAVGVCSAA 112 (401)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhcCCc-HHHHHHH---HHHHHHHHHHHHh---------cCHHHHHHHHHHHHhhhHHHH
Confidence 5667788888888777653 222222 3322211 1222222222221 233455556677777766555
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGS 169 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs 169 (179)
........+..+++++..+-.........|..+|.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 147 (401)
T PRK11043 113 VIWQALVIDRYPAQKANRVFATIMPLVALSPALAP 147 (401)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444555666655554432232223333444443
No 100
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=75.34 E-value=52 Score=28.20 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=33.9
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhh-------HHHHHHHHHHHHHHHHHHHHHH
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHE-------QEVASAMMVLSLGVGLAGGSGL 171 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~-------~e~aG~~m~~~l~~Gl~~Gs~~ 171 (179)
+.+...+.+++.++..|-.........++.++.+| +..+..+.+++...|..+|..+
T Consensus 310 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i 373 (437)
T TIGR00792 310 NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFL 373 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666777888887777666666666554322 2333445556666776666554
No 101
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=75.20 E-value=22 Score=29.24 Aligned_cols=99 Identities=18% Similarity=0.106 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
..+..+.++..+|+...++. +.-++| +.+....+ +.....+++.. .+|-+...+...+.|+.+|-.
T Consensus 42 ~~~s~~~~~~~~~~~~~G~l~d~~G~r-~~~~~~~~---~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~ 108 (377)
T TIGR00890 42 IWFTLLLIGLAMSMPVGGLLADKFGPR-AVAMLGGI---LYGLGFTFYAI---------ADSLAALYLTYGLASAGVGIA 108 (377)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHcCcc-chhHHhHH---HHHHHHHHHHH---------HHHHHHHHHHHHHHhHHHHHH
Confidence 36788999999988877653 222233 22222222 22222222321 234455556666778887755
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHH
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAG 167 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~ 167 (179)
...++....+.. +|||..+..+.......|..+
T Consensus 109 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 141 (377)
T TIGR00890 109 YGIALNTAVKWF-PDKRGLASGIIIGGYGLGSFI 141 (377)
T ss_pred HHhHHHHHHHHc-CcccHHHHHHHHHhcchhHhH
Confidence 444444443333 345666666666655555443
No 102
>PRK15011 sugar efflux transporter B; Provisional
Probab=75.03 E-value=27 Score=29.96 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 117 LVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 117 ~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+...+..++.++..|...+....+..+..+ ++++.+..+.......|..+|+.++
T Consensus 306 ~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~ 360 (393)
T PRK15011 306 AILLGLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLA 360 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHH
Confidence 444455555566666655544443333333 4455555555555677777777655
No 103
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=74.47 E-value=53 Score=30.48 Aligned_cols=59 Identities=15% Similarity=0.033 Sum_probs=50.1
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF 174 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~ 174 (179)
+-+...+.-+++|+..|-.- ....+..+.++++||.++.....-+..+|-++|+.++-.
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999888 777778888999999999999988888888888877644
No 104
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=73.24 E-value=59 Score=28.35 Aligned_cols=105 Identities=13% Similarity=0.074 Sum_probs=53.6
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++-.+|.....+. +.-+++ +.+... =++.....+.+...+ ..-.+-+..++..++.|+..|-..
T Consensus 66 ~~~~~~~~~~~~~~~~G~l~dr~g~~-~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~l~g~~~g~~~ 136 (438)
T TIGR00712 66 ALSAISIAYGFSKFIMGSVSDRSNPR-VFLPAG---LILSAAVMLLMGFVP-----WATSSIAIMFVLLFLNGWFQGMGW 136 (438)
T ss_pred HHHHHHHHHHHhhhccchhhhccCCc-eehHHH---HHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHHHhhcch
Confidence 5667788888887777653 221222 222111 112211111222111 111222344555667788777665
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGS 169 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs 169 (179)
........+..+++||..+-.+.......|-.+|.
T Consensus 137 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~ 171 (438)
T TIGR00712 137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPP 171 (438)
T ss_pred HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHH
Confidence 55555556667778887776666666555555443
No 105
>KOG2325|consensus
Probab=73.23 E-value=62 Score=29.88 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccceeeeeeecCCCCCCCCcccchHHHHHHHHHHhhhhhhhhhhcccCCCCChhHHHHH
Q psy1201 8 YGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLF 87 (179)
Q Consensus 8 ~k~~~~~~~~ifl~f~vTl~vFPgi~~~i~s~~~~~~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~ 87 (179)
.|-+|...++-++..+..-.++|+.-...+.-|++ .+ ++.| - +.....++|-.++-..-+++.-...+.++. +
T Consensus 33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~-A~--~~ff-G-~viaa~slg~~i~~liF~~Ws~k~~~~k~P--l 105 (488)
T KOG2325|consen 33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPT-AT--ATFF-G-LVIAASSLGHAIFSLIFGIWSNKTGSVKKP--L 105 (488)
T ss_pred hHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCC-CC--cchh-h-HHHHHHHHHHHhcchhhcccccccCCcccC--H
Confidence 46677778887777776666777665554443322 11 2223 3 367889999999988777532221222333 3
Q ss_pred HHHHHHHHHHHHHh-hcCCCCCCCccccch--hHHHHHHHHHHhhhhhhhhhhhhcc-cCCCChhhHHHHHHHH--HHHH
Q psy1201 88 SISRFVFMPLVLLC-NIQPRTHLPVLITSD--LVYATIVLLMGLSNGYLANITFICA-AKQVDPHEQEVASAMM--VLSL 161 (179)
Q Consensus 88 ~~~R~~fiPlf~lc-~~~~~~~~p~~~~~d--~~~~~~~~lfg~tnGyl~tl~m~~a-p~~v~~~~~e~aG~~m--~~~l 161 (179)
.+.|++.+--=++. ..+- ..++ |+..+-=++.|+.+|-.+.+=-..+ -+.++++-|-.|+... ++..
T Consensus 106 i~s~ii~~~g~llY~~l~~-------~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ 178 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLALAY-------VPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGI 178 (488)
T ss_pred HHHHHHHHHHHHHHHHHHh-------cccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHH
Confidence 34476655432222 1111 2233 4444444677888776665432222 2234445555555544 5666
Q ss_pred HHHHHHHHHHHHh
Q psy1201 162 GVGLAGGSGLGLF 174 (179)
Q Consensus 162 ~~Gl~~Gs~~s~~ 174 (179)
.+|-.+|.+++-+
T Consensus 179 ilGp~~q~~f~~L 191 (488)
T KOG2325|consen 179 ILGPTIQLAFTPL 191 (488)
T ss_pred HHhHHHHHHHhhh
Confidence 6666666666544
No 106
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=73.14 E-value=33 Score=30.15 Aligned_cols=19 Identities=16% Similarity=0.672 Sum_probs=13.8
Q ss_pred HHHHHHHhhhhhhhhhhcc
Q psy1201 56 AFLVFSVCDYLGRFIAGYL 74 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~ 74 (179)
....+.++-.+|+.+..+.
T Consensus 294 ~~~~~~~~~~~g~~~~G~l 312 (452)
T PRK11273 294 AYFLYEYAGIPGTLLCGWM 312 (452)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4557778888888887763
No 107
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=72.87 E-value=35 Score=29.07 Aligned_cols=58 Identities=9% Similarity=0.002 Sum_probs=29.2
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCCh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDP-HEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~-~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+++..+....+.++.+|......+...-+..++ +++..+-.+.+....+|..+|..++
T Consensus 302 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~ 360 (390)
T TIGR02718 302 GIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIA 360 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455556666555444443343333 4555554444444566776666553
No 108
>PRK15011 sugar efflux transporter B; Provisional
Probab=72.83 E-value=59 Score=27.83 Aligned_cols=27 Identities=7% Similarity=0.027 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhhcccceeeeee
Q psy1201 11 IWMHGLAVCLCFLVSLSLYPSITSLVK 37 (179)
Q Consensus 11 ~~~~~~~ifl~f~vTl~vFPgi~~~i~ 37 (179)
.|...+..++.-+-.-...|.+....+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~~~~~l~ 43 (393)
T PRK15011 17 STAFLIVAFLTGIAGALQTPTLSIFLT 43 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455544444446777766554
No 109
>PRK11043 putative transporter; Provisional
Probab=72.40 E-value=59 Score=27.65 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHH-HHHHHHHHHHHHHHHHHH
Q psy1201 117 LVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVA-SAMMVLSLGVGLAGGSGL 171 (179)
Q Consensus 117 ~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~a-G~~m~~~l~~Gl~~Gs~~ 171 (179)
+...+...++++.+|-.....+..+.+..+ +++..+ |....+....|...+...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~ 351 (401)
T PRK11043 297 VPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLV 351 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667788888777777666655544 344443 333333333333333333
No 110
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=71.41 E-value=60 Score=28.26 Aligned_cols=50 Identities=10% Similarity=-0.075 Sum_probs=32.2
Q ss_pred HHHHHHhhhhh-hhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 122 IVLLMGLSNGY-LANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL 171 (179)
Q Consensus 122 ~~~lfg~tnGy-l~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~ 171 (179)
.+++++...+. ..+....+.++..++++|..+-.++...-..|-.+|+.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~ 419 (479)
T PRK10077 369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWT 419 (479)
T ss_pred HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444432 234556677777788888888888877777777766544
No 111
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=71.09 E-value=18 Score=32.43 Aligned_cols=105 Identities=12% Similarity=0.060 Sum_probs=56.1
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cC-CCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QW-PRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGY 132 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~-~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGy 132 (179)
..+..|.++-.+++...++. .. -+++ +.+....+.-.+- .+++. .. ++.+..++...+.|+.+|-
T Consensus 52 ~~~~~~~~~~~~~~~~~G~laDr~~G~~-~~l~~~~~~~~~g--~~~~~-~~---------~~~~~~~~~~~l~g~g~g~ 118 (475)
T TIGR00924 52 IIFGAYSALVYLLTSVGWWFGDRVWGTK-KTMVLGGIVLMLG--HFMLA-MS---------IYPDLIFYGLGTIAVGSGL 118 (475)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhhcchH-HHHHHHHHHHHHH--HHHHH-hc---------ccHhHHHHHHHHHHhcccc
Confidence 35678888888888877764 22 2222 3333333222221 11111 11 2344555666778888887
Q ss_pred hhhhhhhcccCCCCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 133 LANITFICAAKQVDP---HEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 133 l~tl~m~~ap~~v~~---~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
..........+..++ ++|+.+-.+.....+.|..+|..++
T Consensus 119 ~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~ 161 (475)
T TIGR00924 119 FKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLA 161 (475)
T ss_pred ccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHH
Confidence 654443333333333 2366666677777778877776554
No 112
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=70.00 E-value=20 Score=31.63 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=40.3
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+-+..++.-++.|+.+|-.......+..+..+++||..+..+......+|..+|..++
T Consensus 121 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~ 178 (467)
T PRK09556 121 SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVA 178 (467)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHH
Confidence 3345566667788888877666777777778888888776666666666666665554
No 113
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=69.36 E-value=87 Score=29.63 Aligned_cols=103 Identities=16% Similarity=0.149 Sum_probs=63.7
Q ss_pred HHHHhhhhhhhhhhc-ccCCCCChhHHH-HHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhh
Q psy1201 59 VFSVCDYLGRFIAGY-LQWPRNNGWWVL-LFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANI 136 (179)
Q Consensus 59 ~fnlgD~iGR~~~~~-~~~~~~~~~~l~-~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl 136 (179)
.++.|=..|-.+... .++. ++.||.+ ..++.-.+|.-+... .+++ |.-..+.+.++-|+.-|+....
T Consensus 357 ~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~~~~~~ta~~Gama~--~~~~--------n~~~~i~~~~l~g~giG~~~~~ 425 (599)
T PF06609_consen 357 PVGFGSCAGAVILGLLFSKI-RHIKWQLIFGSVLMTAFCGAMAA--VRPD--------NKNAAIAFLVLAGFGIGGILVP 425 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHc-cchhHHHHHHHHHHHHHHHHHHH--ccCC--------CcchHHHHHHHHHHhHHHHHHH
Confidence 455565566554432 2222 2334443 334445555555332 2332 2223356778889999999999
Q ss_pred hhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 137 TFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 137 ~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
++..+.-.+++++-..+..++...=.+|-++|....
T Consensus 426 ~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy 461 (599)
T PF06609_consen 426 AIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIY 461 (599)
T ss_pred HHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 988887777888877787777777778877777654
No 114
>PRK03893 putative sialic acid transporter; Provisional
Probab=68.35 E-value=29 Score=30.46 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=15.8
Q ss_pred HHHHHHHhhhhhhhhhhcc
Q psy1201 56 AFLVFSVCDYLGRFIAGYL 74 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~ 74 (179)
....+.++..+|+.+..+.
T Consensus 316 ~~~~~~~~~~~g~~~~g~l 334 (496)
T PRK03893 316 VLFFSGFGAAVGCCVGGFL 334 (496)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678889999999998874
No 115
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=68.28 E-value=73 Score=26.95 Aligned_cols=37 Identities=5% Similarity=-0.104 Sum_probs=24.1
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL 171 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~ 171 (179)
.....+..+..++++|..+..+....-++|-.+|..+
T Consensus 402 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~ 438 (481)
T TIGR00879 402 PVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFL 438 (481)
T ss_pred CeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666778888877777777777776666544
No 116
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=67.58 E-value=96 Score=28.02 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=51.5
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+-|+.+...++.|+..+..+...+..+-+.++++++..+..+..+....|-.+|+.++
T Consensus 378 s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~ 435 (489)
T PRK10207 378 SPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVA 435 (489)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888889999999999999999999999999998888888888889999988776
No 117
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=67.54 E-value=81 Score=27.16 Aligned_cols=105 Identities=14% Similarity=-0.002 Sum_probs=56.5
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.+|-.+|.....+. +..+++ +.+.... +.-........ -++.+...+..+++|+.+|...
T Consensus 246 ~~~~~~~g~i~g~~~~~~l~~~~~~~-~~~~~g~----~~~~~~~~~~~---------~~~~~~~~~~~~~~G~~~g~~~ 311 (393)
T PRK11195 246 LQAVVAIGIAVGAGAAARLVTLETVL-RVLPAGI----LMGLVVLLMAL---------QHSLLPAYPLLILIGALGGFFV 311 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccc-chHHHHH----HHHHHHHHHHH---------HhHHHHHHHHHHHHHHhhhhhh
Confidence 4567788888888877653 222222 2221111 11111111110 1233445566778899888877
Q ss_pred hhhhhcccCCCChhh--HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201 135 NITFICAAKQVDPHE--QEVASAMMVLSLGVGLAGGSGLGLFK 175 (179)
Q Consensus 135 tl~m~~ap~~v~~~~--~e~aG~~m~~~l~~Gl~~Gs~~s~~~ 175 (179)
...... .+..+++| +..+..+....-+.|..+|..+.-.+
T Consensus 312 ~~~~~~-~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 312 VPMNAL-LQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred hhHHHH-HHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 544433 34444444 35566677788888877777665443
No 118
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=67.24 E-value=51 Score=29.53 Aligned_cols=108 Identities=23% Similarity=0.249 Sum_probs=68.6
Q ss_pred HHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLAN 135 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~t 135 (179)
++..|.++=.+|--+-....-+.+|++.++.. .-+|+.+|.-. .+=+|-+...+-=++.|+++|-+-+
T Consensus 53 lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~-------l~lFi~~n~l~-----alAp~f~~Ll~aR~~~g~a~G~f~~ 120 (394)
T COG2814 53 LITAYALGVALGAPLLALLTGRLERRRLLLGL-------LALFIVSNLLS-----ALAPSFAVLLLARALAGLAHGVFWS 120 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchHHHHHHH-------HHHHHHHHHHH-----HHhccHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999887665432222343333222 12344444321 1112445667777889999999999
Q ss_pred hhhhcccCCCChhhHHHHHHHHH----HHHHHHHHHHHHHHHhh
Q psy1201 136 ITFICAAKQVDPHEQEVASAMMV----LSLGVGLAGGSGLGLFK 175 (179)
Q Consensus 136 l~m~~ap~~v~~~~~e~aG~~m~----~~l~~Gl~~Gs~~s~~~ 175 (179)
++...+.+.++|++|..|=.++. +++.+|.-+|++++=.+
T Consensus 121 i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~ 164 (394)
T COG2814 121 IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF 164 (394)
T ss_pred HHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 99999999999888777655554 44555665666655433
No 119
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=67.21 E-value=93 Score=27.75 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCC-ChhhHHHHHHHHHHHHHHHHHHHH
Q psy1201 91 RFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQV-DPHEQEVASAMMVLSLGVGLAGGS 169 (179)
Q Consensus 91 R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v-~~~~~e~aG~~m~~~l~~Gl~~Gs 169 (179)
-.++....++|... +|-+..++.-++.|+.+|-.....+...++.. +++||..+-.++......|..+|.
T Consensus 78 ~~~~~~~~~~~~~a---------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp 148 (495)
T PRK14995 78 GTLFGLASLAAAFS---------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGP 148 (495)
T ss_pred HHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556532 35556666667889988877666665555553 678888888888888888887777
Q ss_pred HHHH
Q psy1201 170 GLGL 173 (179)
Q Consensus 170 ~~s~ 173 (179)
.++-
T Consensus 149 ~lgg 152 (495)
T PRK14995 149 LVGG 152 (495)
T ss_pred HHHH
Confidence 7653
No 120
>PRK10091 MFS transport protein AraJ; Provisional
Probab=66.32 E-value=82 Score=26.77 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=16.5
Q ss_pred HHHHHHHHhhhhhhhhhhcc
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL 74 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~ 74 (179)
.....+.+++.+||.+..+.
T Consensus 239 ~~~~~~~~~~~ig~~~~g~l 258 (382)
T PRK10091 239 FIMMLVGLGMVLGNLLSGRL 258 (382)
T ss_pred HHHHHHHHHHHHHhHHHhee
Confidence 35678899999999998874
No 121
>PRK12307 putative sialic acid transporter; Provisional
Probab=65.05 E-value=79 Score=26.99 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=15.0
Q ss_pred HHHHHHHhhhhhhhhhhcc
Q psy1201 56 AFLVFSVCDYLGRFIAGYL 74 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~ 74 (179)
....+.++..+|+.+..+.
T Consensus 271 ~~~~~~~~~~~g~~~~g~l 289 (426)
T PRK12307 271 LMTAAAFGTVLGNIVWGLC 289 (426)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567889999999987753
No 122
>PRK11462 putative transporter; Provisional
Probab=64.52 E-value=82 Score=28.01 Aligned_cols=32 Identities=13% Similarity=0.004 Sum_probs=21.7
Q ss_pred ccCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 141 AAKQV-DPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 141 ap~~v-~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+|+.. ++|||......-...-+.|..+++.+.
T Consensus 134 ~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~ 166 (460)
T PRK11462 134 GGVITNDPTQRISLQSWRFVLATAGGMLSTVLM 166 (460)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45544 588998777777777777766665554
No 123
>PRK09528 lacY galactoside permease; Reviewed
Probab=63.51 E-value=35 Score=29.43 Aligned_cols=56 Identities=14% Similarity=0.059 Sum_probs=31.1
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHH-HHHHHHHHHHHHHH
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAM-MVLSLGVGLAGGSG 170 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~-m~~~l~~Gl~~Gs~ 170 (179)
+.+...+...+.++..+-.....+.+.++..+++.+..+..+ .+..-.+|..+|..
T Consensus 314 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~ 370 (420)
T PRK09528 314 GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLST 370 (420)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHH
Confidence 445556666777777766666666777777666555433212 23333444444443
No 124
>PRK11010 ampG muropeptide transporter; Validated
Probab=63.33 E-value=1.1e+02 Score=27.37 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1201 117 LVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF 174 (179)
Q Consensus 117 ~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~ 174 (179)
++..+..++.++..+-.....-.+.++..++|||..+..+......+|..+|+.++..
T Consensus 108 ~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~ 165 (491)
T PRK11010 108 RWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALW 165 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445455666666665555666777888889999998888888888888888765543
No 125
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=63.08 E-value=89 Score=26.06 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=14.2
Q ss_pred HHHHHHHhhhhhhhhhhcc
Q psy1201 56 AFLVFSVCDYLGRFIAGYL 74 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~ 74 (179)
......++..+|+....+.
T Consensus 235 ~~~~~~~~~~~~~~~~g~l 253 (377)
T PRK11102 235 YFALNIVFLFVMTIINSRF 253 (377)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5667778888888887754
No 126
>PRK10133 L-fucose transporter; Provisional
Probab=62.63 E-value=1.1e+02 Score=26.97 Aligned_cols=56 Identities=7% Similarity=-0.010 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 117 LVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 117 ~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+...+..++.|+..|-..+....+..+..++++++..-.........|..+|..++
T Consensus 118 ~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g 173 (438)
T PRK10133 118 TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778899999999888888776655556665444444444456666665543
No 127
>PRK09669 putative symporter YagG; Provisional
Probab=62.33 E-value=76 Score=27.70 Aligned_cols=32 Identities=16% Similarity=0.002 Sum_probs=18.3
Q ss_pred cccCCC-ChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 140 CAAKQV-DPHEQEVASAMMVLSLGVGLAGGSGL 171 (179)
Q Consensus 140 ~ap~~v-~~~~~e~aG~~m~~~l~~Gl~~Gs~~ 171 (179)
..|+.. +++||......-....+.|..+|+.+
T Consensus 133 l~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~ 165 (444)
T PRK09669 133 MPGAITNDPRERHSLQSWRFALSFIGGLIVSVI 165 (444)
T ss_pred hHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345544 56788866555555555655555543
No 128
>KOG0254|consensus
Probab=61.92 E-value=88 Score=28.14 Aligned_cols=108 Identities=14% Similarity=0.172 Sum_probs=77.3
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
.....+++|-.+|..+.+.. ..-+++ +.+ .++ =+.++---+++... +|.+...+-=++.|+.-|..
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~d~~GRk-~~l-~~~--~~~~~iG~ii~~~a---------~~~~~l~~GR~l~G~g~G~~ 159 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLGDRIGRK-KTL-LLA--VVLFLIGAIIIALA---------PSWYQLIVGRILTGLGVGGA 159 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH-HHH-HHH--HHHHHHHHHHHHHh---------hhHHHHHHHHHHhccchhhh
Confidence 35678999999999888753 332222 222 222 23333333334321 36677788888999999999
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFK 175 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~ 175 (179)
+.+.-+|..+..+++.|...+....++.+.|+.+|-..+...
T Consensus 160 ~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~ 201 (513)
T KOG0254|consen 160 SVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT 201 (513)
T ss_pred hhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999996655544
No 129
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=61.28 E-value=78 Score=28.17 Aligned_cols=53 Identities=8% Similarity=-0.009 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy1201 117 LVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSG 170 (179)
Q Consensus 117 ~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~ 170 (179)
+..++.-++.|+..|-... +..+..+..++++|..+-.+....-+.|..+|..
T Consensus 125 ~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~ 177 (476)
T PLN00028 125 TGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQL 177 (476)
T ss_pred HHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHH
Confidence 3444445666766653222 2223445566777776655554444455554443
No 130
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=60.12 E-value=95 Score=27.61 Aligned_cols=57 Identities=14% Similarity=0.091 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201 119 YATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFK 175 (179)
Q Consensus 119 ~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~ 175 (179)
.++.=++.|+..|-..+.+..+..+..++++|..++.+.......|..+|+.++..+
T Consensus 121 l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~ 177 (490)
T PRK10642 121 LLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI 177 (490)
T ss_pred HHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888887778888888888888888888888777788888887665443
No 131
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=60.10 E-value=21 Score=31.53 Aligned_cols=49 Identities=29% Similarity=0.375 Sum_probs=37.5
Q ss_pred HHHHhhhhhhhhhhhhcccCCCChhhHHH-HHHHHHHHHHHHHHHHHHHH
Q psy1201 124 LLMGLSNGYLANITFICAAKQVDPHEQEV-ASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 124 ~lfg~tnGyl~tl~m~~ap~~v~~~~~e~-aG~~m~~~l~~Gl~~Gs~~s 172 (179)
.+-|+|-|-.-..++.|..+.+|+|.|.. =|...++...+|..+|+.++
T Consensus 309 ~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~ig 358 (400)
T PF03825_consen 309 LLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIG 358 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35899999999999999999988777654 45556667778888887654
No 132
>PRK09848 glucuronide transporter; Provisional
Probab=59.25 E-value=1.2e+02 Score=26.38 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhH-------HHHHHHHHHHHHHHHHHHHHHH
Q psy1201 117 LVYATIVLLMGLSNGYLANITFICAAKQVDPHEQ-------EVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 117 ~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~-------e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+..++.+++.++..|-..+......++.+|.+|. .....+.++.-.+|-.+|..+.
T Consensus 320 ~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~ 382 (448)
T PRK09848 320 PVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIP 382 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556777887777777766666666665543 3344566677777777776654
No 133
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=58.17 E-value=22 Score=31.02 Aligned_cols=59 Identities=12% Similarity=-0.033 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201 117 LVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFK 175 (179)
Q Consensus 117 ~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~ 175 (179)
....+.=++.|+..|-....+..+..+..++++|..+..+.....+.|..+|..+...+
T Consensus 125 ~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 183 (432)
T PRK10406 125 ALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVL 183 (432)
T ss_pred HHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667889998877777777888888888888877777777777877777654443
No 134
>PRK09952 shikimate transporter; Provisional
Probab=58.07 E-value=52 Score=28.83 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 119 YATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 119 ~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
..+.-++.|+..|-....+..+..|..++++|............+|..+|+.+.
T Consensus 128 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~ 181 (438)
T PRK09952 128 LVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLV 181 (438)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 445566789988877666677888888888887777766777777777775543
No 135
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=57.56 E-value=1.5e+02 Score=27.01 Aligned_cols=58 Identities=16% Similarity=0.259 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHh
Q psy1201 117 LVYATIVLLMGLSNGYLANITFICAAKQVDPHEQ--EVASAMMVLSLGVGLAGGSGLGLF 174 (179)
Q Consensus 117 ~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~--e~aG~~m~~~l~~Gl~~Gs~~s~~ 174 (179)
+...+...++.++++-...-.-.+.++.+++++| +.+-.+.+++.++|-.+|..++-.
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~ 174 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAY 174 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556667776666566677787776654 467778888888888888876644
No 136
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=57.31 E-value=1.2e+02 Score=27.21 Aligned_cols=58 Identities=10% Similarity=0.032 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1201 117 LVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF 174 (179)
Q Consensus 117 ~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~ 174 (179)
++.....++-++..|....-.+.+.-+.++++++...-.+.+...++|-.+|+.++-.
T Consensus 352 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~ 409 (468)
T TIGR00788 352 VFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVL 409 (468)
T ss_pred eeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667778888888777777777777776655544444444447777777765543
No 137
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=56.75 E-value=89 Score=24.06 Aligned_cols=107 Identities=10% Similarity=0.091 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhh
Q psy1201 52 TPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNG 131 (179)
Q Consensus 52 ~pvi~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnG 131 (179)
...+++..|.++-+++-.+.++ -++ ||-+++ =.+..+++..++..| +.+..+.--.+.|+.-+
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~---lg~--K~sm~l---g~~~y~~y~~~~~~~---------~~~~l~~~s~l~G~~~a 104 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNK---LGP--KWSMIL---GSLGYAIYIASFFYP---------NSYTLYPASALLGFGAA 104 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH---Hhh--HHHHHH---HHHHHHHHHHHHHhh---------hHHHHHHHHHHHhhhhH
Confidence 3456788888888876554433 222 333222 234556677777543 45666666677777777
Q ss_pred hhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201 132 YLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFK 175 (179)
Q Consensus 132 yl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~ 175 (179)
-+-+---.|--+..++++||+--.+---....++..|....+.+
T Consensus 105 ~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 105 LLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554444444444566666544444444456788888877665
No 138
>PRK10429 melibiose:sodium symporter; Provisional
Probab=55.11 E-value=1.3e+02 Score=26.63 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=14.1
Q ss_pred ccCCC-ChhhHHHHHHHHHHHHHHH
Q psy1201 141 AAKQV-DPHEQEVASAMMVLSLGVG 164 (179)
Q Consensus 141 ap~~v-~~~~~e~aG~~m~~~l~~G 164 (179)
.|+.. +++||......-.+.-+.|
T Consensus 131 ~~~lt~~~~eR~~l~~~~~~~~~ig 155 (473)
T PRK10429 131 VPTLTLDKREREQLVPYPRFFASLA 155 (473)
T ss_pred hHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 36655 6888888655533444444
No 139
>TIGR00901 2A0125 AmpG-related permease.
Probab=55.07 E-value=94 Score=25.85 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHH
Q psy1201 116 DLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVA 153 (179)
Q Consensus 116 d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~a 153 (179)
.+.....+++.++.+|......+.+..+..++|+|...
T Consensus 309 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~ 346 (356)
T TIGR00901 309 LLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQ 346 (356)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHH
Confidence 35556667777999998888888888888877776553
No 140
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=54.57 E-value=48 Score=30.22 Aligned_cols=137 Identities=20% Similarity=0.253 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHhhc---ccceeeeeeecCCCCCCCCcccchHHHHHHHHHHhhhhhhhhhhcc--cCCCCChhH
Q psy1201 9 GSIWMHGLAVCLCFLVSLSL---YPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYL--QWPRNNGWW 83 (179)
Q Consensus 9 k~~~~~~~~ifl~f~vTl~v---FPgi~~~i~s~~~~~~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~--~~~~~~~~~ 83 (179)
|-+|..+++-+++|++=..+ =|-..+|.+.-+..+ .-..+.+|=++-+.|-.+++|. ++.+-|| .
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~---------a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR-~ 321 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVK---------ANWAISLFEVAGLPGTLLAGWLSDKLFKGRR-G 321 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHH---------HHHHHHHHHHHhhHHHHHHHHHHHHhccccc-c
Confidence 45788888888888877643 233444433322211 1236789999999999999985 3443332 2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCC------CChhhHHHHHHHH
Q psy1201 84 VLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQ------VDPHEQEVASAMM 157 (179)
Q Consensus 84 l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~------v~~~~~e~aG~~m 157 (179)
...+...=.+++- ++.+.. .|. .|.+...+..++.|+ .+|+|+. .+-..||.||...
T Consensus 322 p~~~i~~~~i~~~---~~~~w~---~~~--~~~~l~~~~l~~iGf---------~IyGPqmLiGl~a~e~~pK~AaGtA~ 384 (448)
T COG2271 322 PMALIFMLLITAS---LVLYWL---APN--GSYLLDAILLFIIGF---------LIYGPQMLIGLAAAEFVPKKAAGTAT 384 (448)
T ss_pred hHHHHHHHHHHHH---HHHHHc---CCC--ccHHHHHHHHHHHHH---------HHhhHHHHHHHHHhccccHhhccchh
Confidence 3222211111111 122211 111 133444555555554 3567764 3556688888888
Q ss_pred HHHHHHHHHHHHHHH
Q psy1201 158 VLSLGVGLAGGSGLG 172 (179)
Q Consensus 158 ~~~l~~Gl~~Gs~~s 172 (179)
.+.-.+|-..|+.++
T Consensus 385 Gf~Glf~Yl~Ga~~a 399 (448)
T COG2271 385 GFVGLFAYLIGAALA 399 (448)
T ss_pred chhhhHHHHhhHHhc
Confidence 888888887777665
No 141
>PRK15075 citrate-proton symporter; Provisional
Probab=54.28 E-value=1.5e+02 Score=25.79 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=38.6
Q ss_pred HHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1201 120 ATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF 174 (179)
Q Consensus 120 ~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~ 174 (179)
++.-++.|+..|-.......+..+..++++|..+..+.....+.|..+|..++..
T Consensus 121 ~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~ 175 (434)
T PRK15075 121 LLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYL 175 (434)
T ss_pred HHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677888776666666778888888888888777766666666655555443
No 142
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=52.82 E-value=1.4e+02 Score=25.20 Aligned_cols=57 Identities=14% Similarity=0.007 Sum_probs=38.8
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+.+.......++++..|-.....+.+..+..+ +++..++.+.+.....|-.+|+.++
T Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~ 354 (394)
T PRK11652 298 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLS 354 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667788888888777777766665554 4556666666666677777777654
No 143
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=52.22 E-value=1.4e+02 Score=24.86 Aligned_cols=101 Identities=11% Similarity=0.051 Sum_probs=50.7
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++=.+|.....+. +.-+++ +.+.... ++.....+.+ . .++.+..++..++.|+..|...
T Consensus 40 ~~s~~~~~~~~~~~~~g~l~dr~g~r-~~~~~~~---~~~~~~~~~~-~---------~~~~~~l~~~~~~~g~g~~~~~ 105 (355)
T TIGR00896 40 LTALPVLCFAVLAPLAPWLARRFGEE-RSVAAGL---LLIAAGILIR-S---------APGTALLFAGTALIGVGIAIIN 105 (355)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCch-HHHHHHH---HHHHHHHHHH-H---------hccHHHHHHHHHHHHHHHHHHh
Confidence 4566777777776666543 121222 3332222 2222222223 1 1244555666777888887765
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL 171 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~ 171 (179)
+..-....+.. +++|..+-.+.....+.|..+|..+
T Consensus 106 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~i~~~~ 141 (355)
T TIGR00896 106 VLLPSLIKRDF-PQRVGLMTGLYSMALMGGAALAAAA 141 (355)
T ss_pred ccchHHHHHhC-cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 54433333333 3455555555555666666666544
No 144
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=51.40 E-value=1.9e+02 Score=26.13 Aligned_cols=87 Identities=10% Similarity=-0.022 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHH
Q psy1201 81 GWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLS 160 (179)
Q Consensus 81 ~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~ 160 (179)
++......+.=+.|..+-.-+.+..++ . .-|.++.....+++++..+.++-..+...-+..|++.|.+.-.+..++
T Consensus 351 ~~~~~G~~l~~l~f~~l~~~~~~~~~~---~-~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~ 426 (500)
T PRK09584 351 HKFAIGMVLCSGAFLVLPLGAKFANDA---G-IVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLT 426 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC---C-ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 344444455555555554444332211 1 236678999999999999999999998888888877776655555444
Q ss_pred HHHHHHHHHHH
Q psy1201 161 LGVGLAGGSGL 171 (179)
Q Consensus 161 l~~Gl~~Gs~~ 171 (179)
...|-..|+.+
T Consensus 427 ~a~g~~~~g~~ 437 (500)
T PRK09584 427 TAGAALIAGYV 437 (500)
T ss_pred HHHHHHHHHHH
Confidence 44454444444
No 145
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=51.36 E-value=1.8e+02 Score=25.98 Aligned_cols=60 Identities=18% Similarity=0.098 Sum_probs=51.7
Q ss_pred cchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 114 TSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL 173 (179)
Q Consensus 114 ~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~ 173 (179)
.|-|+.++.++++++..+..+...+....+..|++.|.+.-.+..+....|-.+|+.++-
T Consensus 379 ~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~ 438 (475)
T TIGR00924 379 TSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLAT 438 (475)
T ss_pred cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999999999999999999998888888888888888888776654
No 146
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=50.62 E-value=1.1e+02 Score=26.70 Aligned_cols=31 Identities=10% Similarity=-0.026 Sum_probs=15.8
Q ss_pred HHHHHHHhhhhhhhhhhhhcccCCCChhhHH
Q psy1201 121 TIVLLMGLSNGYLANITFICAAKQVDPHEQE 151 (179)
Q Consensus 121 ~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e 151 (179)
....+.++.++=.-...+..+.+..+++.++
T Consensus 326 ~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~ 356 (410)
T TIGR00885 326 YCLTLCSAFMSLMFPTIYGIALKGLGQDTKY 356 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 3333344433322256666677777655554
No 147
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=50.56 E-value=1.9e+02 Score=26.05 Aligned_cols=106 Identities=21% Similarity=0.255 Sum_probs=62.6
Q ss_pred HHHHHHHhhhhhhhhhhcccCCC--CChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYLQWPR--NNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~~~~~--~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
+...+..|-++|-.+..+...++ +++...+.+...=..|. +.+++. ...+++..-.-++++|+.||.+
T Consensus 249 Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~-lii~a~---------~~~~~~~~~~~~~l~G~g~G~f 318 (403)
T PF03209_consen 249 LTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFA-LIILAG---------PLGSPWLFRPGVFLLGLGNGLF 318 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH-HHHHHH---------hcccchHHHHHHHHHHHhhhHH
Confidence 46678888888888887643332 22222223322222222 222222 2467888899999999999998
Q ss_pred hhhhhhcccCCCCh----hhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 134 ANITFICAAKQVDP----HEQEVASAMMVLSLGVGLAGGSGL 171 (179)
Q Consensus 134 ~tl~m~~ap~~v~~----~~~e~aG~~m~~~l~~Gl~~Gs~~ 171 (179)
+.-+....=+..++ -....-|..-+.+-.+|...|+.+
T Consensus 319 ~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~ 360 (403)
T PF03209_consen 319 TVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGAL 360 (403)
T ss_pred HHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76443333333322 234456666677777777777764
No 148
>PRK15075 citrate-proton symporter; Provisional
Probab=49.54 E-value=98 Score=26.88 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=13.9
Q ss_pred HHHHHHHhhhhhhhhhhcc
Q psy1201 56 AFLVFSVCDYLGRFIAGYL 74 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~ 74 (179)
....+.++..+|+.+..+.
T Consensus 279 ~~~~~~~~~~~~~~~~g~l 297 (434)
T PRK15075 279 VTLCVGVSNFIWLPIGGAL 297 (434)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4557788888888876653
No 149
>PF05968 Bacillus_PapR: Bacillus PapR protein; InterPro: IPR009239 This family consists of the Bacillus species-specific PapR protein. The papR gene belongs to the PlcR regulon and is located 70 bp downstream from plcR. It encodes a 48-amino-acid peptide. Disruption of the papR gene abolishes expression of the PlcR regulon, resulting in a large decrease in haemolysis and virulence in insect larvae. A processed form of PapR activates the PlcR regulon by allowing PlcR to bind to its DNA target. This activating mechanism is strain specific [].
Probab=48.13 E-value=18 Score=22.42 Aligned_cols=19 Identities=16% Similarity=0.445 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1201 150 QEVASAMMVLSLGVGLAGG 168 (179)
Q Consensus 150 ~e~aG~~m~~~l~~Gl~~G 168 (179)
|-++|.++++++..|++.|
T Consensus 3 kll~~slltlam~~gislg 21 (48)
T PF05968_consen 3 KLLIGSLLTLAMAWGISLG 21 (48)
T ss_pred hHHHhHHHHHHHHhhhhhh
Confidence 5689999999999999998
No 150
>PRK10133 L-fucose transporter; Provisional
Probab=47.96 E-value=1.4e+02 Score=26.24 Aligned_cols=42 Identities=12% Similarity=0.119 Sum_probs=26.2
Q ss_pred HHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHH
Q psy1201 120 ATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLG 162 (179)
Q Consensus 120 ~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~ 162 (179)
.....+.|+.+|-.-...+..+-+..++ +.+.+..++.....
T Consensus 351 ~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~~~~~ 392 (438)
T PRK10133 351 LIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVMTII 392 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHhHHhc
Confidence 4456667888887777777777776544 34455555554443
No 151
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=47.85 E-value=58 Score=28.10 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFK 175 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~ 175 (179)
|-+...+.-++.|+..|.. ..+.....+..+++||.++-.++.....+|..+|..++..+
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l 137 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKI 137 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788889998853 33334445667888999988888888888888887666544
No 152
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=47.17 E-value=2.2e+02 Score=25.86 Aligned_cols=108 Identities=15% Similarity=0.073 Sum_probs=58.1
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
+..++.++=-++|...++. +.-.+| ++.....+ +..+|.+.+.-..++ ..+|-+..++.-++.|++.+..
T Consensus 75 l~ai~~l~~al~rip~G~l~Dr~G~R-~v~~~~~l--l~~i~~~~~~~a~~~-----~~~s~~~lli~r~l~Gigg~~f- 145 (462)
T PRK15034 75 LTALPSVSGALLRVPYSFMVPIFGGR-RWTVFSTA--ILIIPCVWLGIAVQN-----PNTPFGIFIVIALLCGFAGANF- 145 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCh-HHHHHHHH--HHHHHHHHHHHHHcc-----cCCCHHHHHHHHHHHHHHHHhH-
Confidence 4556676666777766543 222333 33322221 234565543321110 1235566677778888874433
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
..++....+.-+++||..|-.+..-.-+.|..++..+.
T Consensus 146 ~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~ 183 (462)
T PRK15034 146 ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA 183 (462)
T ss_pred HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 34555556666778887776666545556665555444
No 153
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=46.58 E-value=2e+02 Score=25.21 Aligned_cols=19 Identities=26% Similarity=0.705 Sum_probs=14.5
Q ss_pred HHHHHHHhhhhhhhhhhcc
Q psy1201 56 AFLVFSVCDYLGRFIAGYL 74 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~ 74 (179)
....++++..+|+.+..+.
T Consensus 299 ~~~~~~~~~~ig~~~~G~l 317 (467)
T PRK09556 299 TFTLFEIGALVGSLLWGWL 317 (467)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566788888999888764
No 154
>KOG2816|consensus
Probab=46.57 E-value=1.1e+02 Score=27.90 Aligned_cols=54 Identities=26% Similarity=0.373 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhc--ccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 117 LVYATIVLLMGLSNGYLANITFIC--AAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL 173 (179)
Q Consensus 117 ~~~~~~~~lfg~tnGyl~tl~m~~--ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~ 173 (179)
||.++ +.+++.||..+.+-.. .++..+.++|-.+=.+++-++..|+.+|..++-
T Consensus 114 ~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~ 169 (463)
T KOG2816|consen 114 YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGG 169 (463)
T ss_pred HHHhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55555 8899999988866554 466667777777666667766666666666553
No 155
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=46.38 E-value=1.8e+02 Score=24.40 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhcccCCCChhhHHH
Q psy1201 120 ATIVLLMGLSNGYLANITFICAAKQVDPHEQEV 152 (179)
Q Consensus 120 ~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~ 152 (179)
...+.++|+.+|-.-...+..+.+..+++.+..
T Consensus 234 ~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~a 266 (310)
T TIGR01272 234 MWFVLALGLFNSIMFPTIFSLALNALGRHTSQG 266 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 345557788888777777777777766554433
No 156
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=46.07 E-value=78 Score=26.94 Aligned_cols=55 Identities=13% Similarity=0.072 Sum_probs=31.2
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHH-HHHHHHHHHHHHH
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAM-MVLSLGVGLAGGS 169 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~-m~~~l~~Gl~~Gs 169 (179)
+.+...+..++.|.+.+......+.+.++..+++.+.++..+ ..+...+|-.+|.
T Consensus 306 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~ 361 (396)
T TIGR00882 306 TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLS 361 (396)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHH
Confidence 455566677777887777766677677766554443332212 2344445544443
No 157
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=45.60 E-value=1.6e+02 Score=25.23 Aligned_cols=103 Identities=13% Similarity=0.070 Sum_probs=54.4
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++=.++-....+. +.-++| +.+ ... =.++..-.+.|... +|-+...+.-++.|+..|-..
T Consensus 49 ~~s~~~~~~~l~~~~~g~l~dr~G~r-~~l-~~~--~~l~~~~~~~~~~a---------~~~~~ll~~r~l~Gig~~~~~ 115 (393)
T PRK09705 49 LTALPVVTMGGLALAGSWLHQHVSER-RSV-AIS--LLLIAVGALMRELY---------PQSALLLSSALLGGVGIGIIQ 115 (393)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCch-HHH-HHH--HHHHHHHHHHHHHC---------cchHHHHHHHHHHHhHHHHHh
Confidence 4566666666665555442 111232 222 222 23333333445432 244455666777788888665
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
.......++.-+ ++|..+-.......+.|..+|..++
T Consensus 116 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~ 152 (393)
T PRK09705 116 AVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAIT 152 (393)
T ss_pred hhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 555555455443 5565555555556666777766654
No 158
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=44.46 E-value=1.2e+02 Score=26.75 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=25.5
Q ss_pred HHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy1201 124 LLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSG 170 (179)
Q Consensus 124 ~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~ 170 (179)
++.|+..|.....++....+.. +++|..+-.+.......|..+|..
T Consensus 116 ~l~G~~~~~~~~~~~~~~~~~~-~~~r~~a~g~~~~~~~~g~~~~~~ 161 (455)
T TIGR00892 116 FITGLGLAFNFQPSLTMLGKYF-YRRRPLANGLAMAGSPVFLSTLAP 161 (455)
T ss_pred HHHHhcchhhhhHHHHHHHHHH-HhhHHHHHHHHHhcccHHHHHHHH
Confidence 5668888765444444433434 466666666655555555554433
No 159
>PF13347 MFS_2: MFS/sugar transport protein
Probab=42.16 E-value=65 Score=27.98 Aligned_cols=55 Identities=13% Similarity=0.057 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhcccCCCC-hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 117 LVYATIVLLMGLSNGYLANITFICAAKQVD-PHEQEVASAMMVLSLGVGLAGGSGL 171 (179)
Q Consensus 117 ~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~-~~~~e~aG~~m~~~l~~Gl~~Gs~~ 171 (179)
++..+..+++.++--....--....|+..+ +|||........++-..|..+.+.+
T Consensus 104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~ 159 (428)
T PF13347_consen 104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFL 159 (428)
T ss_pred HHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444444445677664 6788888888777777777544333
No 160
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=42.16 E-value=1.2e+02 Score=26.43 Aligned_cols=19 Identities=16% Similarity=0.672 Sum_probs=14.7
Q ss_pred HHHHHHHhhhhhhhhhhcc
Q psy1201 56 AFLVFSVCDYLGRFIAGYL 74 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~ 74 (179)
....+.++..+|+.+..+.
T Consensus 292 ~~~~~~~~~~ig~~~~g~l 310 (438)
T TIGR00712 292 AYFLYEYAGIPGTLLCGWM 310 (438)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567888889999888763
No 161
>PF13347 MFS_2: MFS/sugar transport protein
Probab=40.79 E-value=2.4e+02 Score=24.38 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=40.8
Q ss_pred cchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhH----HHHHHHH---HHHHHHHHHHHHHHHH
Q psy1201 114 TSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQ----EVASAMM---VLSLGVGLAGGSGLGL 173 (179)
Q Consensus 114 ~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~----e~aG~~m---~~~l~~Gl~~Gs~~s~ 173 (179)
.|.+..++...+.|+..|-........-++.+|.+|. +..|.++ ++....|..+|..+.-
T Consensus 313 ~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 313 GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3678888888999999988888877777888775543 3455544 4455556655555433
No 162
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=40.18 E-value=2.3e+02 Score=23.91 Aligned_cols=19 Identities=5% Similarity=0.013 Sum_probs=14.2
Q ss_pred HHHHHHHhhhhhhhhhhcc
Q psy1201 56 AFLVFSVCDYLGRFIAGYL 74 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~ 74 (179)
......++..+|+.+..+.
T Consensus 244 ~~~~~~~~~i~~~~~~~~l 262 (392)
T PRK10473 244 IMALTAGVSMTVSFSTPFA 262 (392)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567788888988877653
No 163
>KOG3098|consensus
Probab=39.92 E-value=2.3e+02 Score=25.97 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=76.5
Q ss_pred cchHHHHHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhh
Q psy1201 50 YFTPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLS 129 (179)
Q Consensus 50 ~f~pvi~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~t 129 (179)
|...-+++..|.++-+.+=.+.... .+ ||.+++ +....+.|...- ++.|.++.++--.++|+.
T Consensus 53 y~~~aiiY~~ftv~~l~~psiv~~i---~~--K~~lv~---ga~~y~~f~~gf---------l~~N~y~~yfssallG~G 115 (461)
T KOG3098|consen 53 YYGQAIIYAFFTVSCLFAPSIVNFL---GP--KWALVI---GATCYAAFPLGF---------LFPNSYYLYFSSALLGFG 115 (461)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHh---hH--HHHHHH---HhHHHHHHHHHH---------HhcchHHHHHHHHHhhhh
Confidence 4445567888888877766655542 12 454333 566666665443 355789999999999999
Q ss_pred hhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1201 130 NGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFKD 176 (179)
Q Consensus 130 nGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~~ 176 (179)
-+.+-+---.|-.+..++|.+|..-.++=-....++..|+..-+.+.
T Consensus 116 aallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~ 162 (461)
T KOG3098|consen 116 AALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYF 162 (461)
T ss_pred HHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeee
Confidence 88655555555566667888998888888888999999988765543
No 164
>PRK11010 ampG muropeptide transporter; Validated
Probab=39.75 E-value=1.9e+02 Score=25.95 Aligned_cols=25 Identities=8% Similarity=0.151 Sum_probs=15.7
Q ss_pred HHhhhhhhhhhhhhcccCCCChhhH
Q psy1201 126 MGLSNGYLANITFICAAKQVDPHEQ 150 (179)
Q Consensus 126 fg~tnGyl~tl~m~~ap~~v~~~~~ 150 (179)
.|++.+-..+..|...|+..+..+.
T Consensus 330 ~g~~~~~~~a~~~~l~~~~~~~t~~ 354 (491)
T PRK11010 330 GGMGTAAFVALLMTLCNKSFSATQF 354 (491)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHH
Confidence 4555665666667777777665443
No 165
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=39.18 E-value=2.4e+02 Score=23.86 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=24.8
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 140 CAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 140 ~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
.+++..+++++...+.........|..+|+..+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~ 153 (390)
T TIGR02718 121 MAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGT 153 (390)
T ss_pred HHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788878778777777788888887543
No 166
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=37.75 E-value=2.6e+02 Score=23.85 Aligned_cols=28 Identities=4% Similarity=0.141 Sum_probs=20.3
Q ss_pred HHHhhhhhhhhhhhhcccCCCChhhHHH
Q psy1201 125 LMGLSNGYLANITFICAAKQVDPHEQEV 152 (179)
Q Consensus 125 lfg~tnGyl~tl~m~~ap~~v~~~~~e~ 152 (179)
..|++.|-..+..+.+..+..+++++..
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (402)
T PRK11902 316 CGGMGTAAFVALLMALCNRSFSATQYAL 343 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 4566677778888888888887766543
No 167
>KOG2615|consensus
Probab=36.85 E-value=45 Score=30.31 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=37.0
Q ss_pred HHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHH----HHHHHHHH
Q psy1201 123 VLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGL----AGGSGLGL 173 (179)
Q Consensus 123 ~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl----~~Gs~~s~ 173 (179)
=++.|++||-++ +++.+..+.+++|+|.++=..++.+-.+|. .+|+.++.
T Consensus 128 R~l~Gi~kgnl~-v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 128 RFLGGIFKGNLS-VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHhhhhccCchH-HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 578999999875 667888888888888887666666666555 55555554
No 168
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=35.96 E-value=2.8e+02 Score=23.80 Aligned_cols=54 Identities=17% Similarity=0.025 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 118 VYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL 171 (179)
Q Consensus 118 ~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~ 171 (179)
...+...+++...|-.........-+.+++++|..+-.+..+....|-.+|..+
T Consensus 299 ~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l 352 (400)
T PRK11646 299 QLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIG 352 (400)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccc
Confidence 334455666666664444444455566777787777777777777777776543
No 169
>KOG3810|consensus
Probab=34.60 E-value=1.1e+02 Score=27.51 Aligned_cols=81 Identities=22% Similarity=0.216 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhcCCCCCCCccccchhHH--HHHHHHHHhhhh----------hhhhhhh---hcccCCCChhhHHHHHHH
Q psy1201 92 FVFMPLVLLCNIQPRTHLPVLITSDLVY--ATIVLLMGLSNG----------YLANITF---ICAAKQVDPHEQEVASAM 156 (179)
Q Consensus 92 ~~fiPlf~lc~~~~~~~~p~~~~~d~~~--~~~~~lfg~tnG----------yl~tl~m---~~ap~~v~~~~~e~aG~~ 156 (179)
+.++|.|++.++-.. .|+++-+-... +-.|+++|=|=. ..+.--. .|--++|++++.+++-.-
T Consensus 57 v~LvpvFlLTD~lrY--KPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt~y 134 (433)
T KOG3810|consen 57 VGLVPVFLLTDYLRY--KPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVTGY 134 (433)
T ss_pred HHHHHHHHHhhhhhc--ceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHHHH
Confidence 456788888876432 36666554433 333444433221 1111111 122335777665555555
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy1201 157 MVLSLGVGLAGGSGLGLF 174 (179)
Q Consensus 157 m~~~l~~Gl~~Gs~~s~~ 174 (179)
.--+...|-+.|+.++=+
T Consensus 135 ~RaA~L~g~~~g~vlaQl 152 (433)
T KOG3810|consen 135 CRAAFLVGKFVGSVLAQL 152 (433)
T ss_pred hHHHHHHHhHHHhHHHHH
Confidence 555667888888887644
No 170
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=34.34 E-value=3.3e+02 Score=24.15 Aligned_cols=35 Identities=20% Similarity=0.133 Sum_probs=24.0
Q ss_pred hhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy1201 136 ITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSG 170 (179)
Q Consensus 136 l~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~ 170 (179)
+...+.++..+++.|.++-.+....-..|-.+|..
T Consensus 412 ~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~ 446 (502)
T TIGR00887 412 TTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQF 446 (502)
T ss_pred hhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHH
Confidence 44555677778888888777777666666655554
No 171
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=33.99 E-value=1e+02 Score=27.79 Aligned_cols=52 Identities=17% Similarity=0.064 Sum_probs=41.7
Q ss_pred HHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 121 TIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 121 ~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+.-.+.|+-=+-.+|.......+.+++|+|.++-.++=.++..|+.+|+...
T Consensus 94 l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~ 145 (403)
T PF03209_consen 94 LAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVF 145 (403)
T ss_pred HHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3334456666666777778888899999999999999999999999988654
No 172
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=33.93 E-value=2.3e+02 Score=22.23 Aligned_cols=86 Identities=15% Similarity=0.266 Sum_probs=41.8
Q ss_pred CCCCcccchHHHHHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHH
Q psy1201 44 TEWTDKYFTPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIV 123 (179)
Q Consensus 44 ~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~ 123 (179)
++|.+.. ..+..+..|-+|-.+|+.+..+.+.++++ ++.....+.-.++.-...+.....+. +. .......++-
T Consensus 44 ~~~~~~~-~~~~~i~~F~~G~~~~~~i~~~~~~~~~~-~~~~~~l~~~~~ll~~~~~~~~~~~~--~~--~~~~~~~~la 117 (209)
T PF06912_consen 44 GDWSGAL-RYLLAILSFILGAFLAGLIVRRSRRRRRR-RWYRILLLLEAILLLIAALLPPAFPP--HG--HRILAIFLLA 117 (209)
T ss_pred CcHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchh-HHHHHHHHHHHHHHHHHHHHHHhccc--ch--HHHHHHHHHH
Confidence 4553322 34678899999999999995443222122 23323333344443333322211100 00 1234445555
Q ss_pred HHHHhhhhhhhh
Q psy1201 124 LLMGLSNGYLAN 135 (179)
Q Consensus 124 ~lfg~tnGyl~t 135 (179)
+..|.=|+....
T Consensus 118 famg~Qn~~~~~ 129 (209)
T PF06912_consen 118 FAMGMQNAAFRR 129 (209)
T ss_pred HHHHHHHHHHHH
Confidence 566666655554
No 173
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=33.30 E-value=3.1e+02 Score=23.42 Aligned_cols=19 Identities=5% Similarity=0.193 Sum_probs=15.1
Q ss_pred HHHHHHHhhhhhhhhhhcc
Q psy1201 56 AFLVFSVCDYLGRFIAGYL 74 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~ 74 (179)
....+.++..+||.+..+.
T Consensus 245 ~~~~~~i~~i~g~~~~g~l 263 (393)
T PRK09705 245 LLALMTLGQAAGALLMPAM 263 (393)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567888999999988764
No 174
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=33.20 E-value=2e+02 Score=25.48 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=14.9
Q ss_pred HHHHHHHhhhhhhhhhhcc
Q psy1201 56 AFLVFSVCDYLGRFIAGYL 74 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~ 74 (179)
....++++..+||.+..+.
T Consensus 293 ~~~~~~~~~~ig~~~~G~l 311 (476)
T PLN00028 293 IAASFGLMNLFARPAGGYL 311 (476)
T ss_pred HHHHHHHHHHHHHhhhHHH
Confidence 5667889999999877653
No 175
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.15 E-value=94 Score=23.01 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1201 150 QEVASAMMVLSLGVGLAGGSGLGLFKDYV 178 (179)
Q Consensus 150 ~e~aG~~m~~~l~~Gl~~Gs~~s~~~~~~ 178 (179)
.+..+.=.+.=+..|+.+|..++++++++
T Consensus 41 ~~~~a~klssefIsGilVGa~iG~llD~~ 69 (116)
T COG5336 41 GYAQAFKLSSEFISGILVGAGIGWLLDKF 69 (116)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555678888888888888764
No 176
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=32.06 E-value=2.8 Score=36.44 Aligned_cols=110 Identities=16% Similarity=0.199 Sum_probs=74.4
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.+|-.+|-.+..+. +.-++| +.+ ..+. ++.+.--+++...+. ..|.+...+.-++.|+.+|-..
T Consensus 51 ~~~~~~~g~~~G~~~~g~~~d~~GRk-~~~-~~~~--~~~~i~~~~~~~~~~------~~~~~~~~~~R~~~G~~~g~~~ 120 (451)
T PF00083_consen 51 LTSSFFIGAIVGALIFGFLADRYGRK-PAL-IISA--LLMIIGSILIAFAPS------YNNFWMLLIGRFLIGFGIGGAY 120 (451)
T ss_pred HHHHHHhhhccccccccccccccccc-ccc-cccc--ccccccccccccccc------cccccccccccccccccccccc
Confidence 5788999999999988854 332232 222 1110 111111111211110 0255667777789999999999
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFK 175 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~ 175 (179)
+....|.-|..+++.|...+.+...+...|..+|..++..+
T Consensus 121 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 121 VVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999888888888889998888877655
No 177
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=31.51 E-value=3.4e+02 Score=23.40 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=15.6
Q ss_pred HHHHHHHhhhhhhhhhhcc
Q psy1201 56 AFLVFSVCDYLGRFIAGYL 74 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~ 74 (179)
.....+++..+|+....+.
T Consensus 284 ~~~~~~l~~~~g~l~~g~l 302 (412)
T TIGR02332 284 LAAIPQFCTIFGMIWWSRH 302 (412)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 5678889999999988764
No 178
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=31.50 E-value=2e+02 Score=20.79 Aligned_cols=76 Identities=21% Similarity=0.368 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhh
Q psy1201 52 TPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNG 131 (179)
Q Consensus 52 ~pvi~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnG 131 (179)
.|......+-++-++|-..+.++.. ++.|+......=+-+.-+++..-...++ |....++....+...+-|.-.|
T Consensus 39 ~~~~~~~i~~ls~~~GG~~a~~~~~---~kG~l~G~~~Gl~y~~il~lis~~~~~~--~~~~~~~~~~~~~~~~~G~lGG 113 (116)
T PF12670_consen 39 LPWLVVIIYILSVFIGGFYAGRKAG---SKGWLHGLLVGLLYFLILLLISFLFGPG--PFSGSSQLLKLLLCLLAGALGG 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHHHHHHHHHccC--cchHHHHHHHHHHHHHHHHHHh
Confidence 3556788999999999999986533 3357766655444334444433332221 1112344555555555555544
Q ss_pred h
Q psy1201 132 Y 132 (179)
Q Consensus 132 y 132 (179)
-
T Consensus 114 ~ 114 (116)
T PF12670_consen 114 M 114 (116)
T ss_pred h
Confidence 3
No 179
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=30.05 E-value=77 Score=29.78 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 118 VYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 118 ~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
..++..++.|+..|-..+++..+..+.+++++|..+-.++.....+|-.+|-.++
T Consensus 174 ~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llg 228 (633)
T TIGR00805 174 LFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLG 228 (633)
T ss_pred hhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 3456778889998888888888988889999888888888777777777775554
No 180
>cd01059 CCC1_like CCC1-related family of proteins. CCC1_like: This protein family includes the proteins related to CCC1, a yeast vacuole transmembrane protein responsible for the iron and manganese transport from the cytosol into vacuole. It also includes the proteins similar to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation.
Probab=26.42 E-value=84 Score=23.65 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=34.7
Q ss_pred HHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHH
Q psy1201 122 IVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLA 166 (179)
Q Consensus 122 ~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~ 166 (179)
.+.+-|++++--.++.|..+.-..++.|||.++..+.++-..|-.
T Consensus 31 ~il~~Gl~~~ia~a~Sma~g~yls~~~e~~~~al~~~~s~~~g~l 75 (143)
T cd01059 31 AILLAGLAGLVAGAISMAAGEYVSVKSQRDKAALASGLSFILGGL 75 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Confidence 567788999999999999887776777777777777777666643
No 181
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=26.20 E-value=3e+02 Score=24.80 Aligned_cols=56 Identities=11% Similarity=0.007 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhcccCCCChhh--HHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 117 LVYATIVLLMGLSNGYLANITFICAAKQVDPHE--QEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 117 ~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~--~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+...+...+.|+.+|-..........+..++++ ++.+-.+...+.+.|..+|..++
T Consensus 113 ~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~ 170 (500)
T PRK09584 113 GIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLAT 170 (500)
T ss_pred HHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 334455667888888665555444555444333 33344445566677776665443
No 182
>KOG3762|consensus
Probab=25.93 E-value=53 Score=31.04 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=50.2
Q ss_pred ccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhh-HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201 113 ITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHE-QEVASAMMVLSLGVGLAGGSGLGLFK 175 (179)
Q Consensus 113 ~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~-~e~aG~~m~~~l~~Gl~~Gs~~s~~~ 175 (179)
.+|.|....+.++-|.|||-+=+.+..|+...++|+- +..-|.+-.....+|...||+++-.+
T Consensus 456 L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~ 519 (618)
T KOG3762|consen 456 LQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFV 519 (618)
T ss_pred hcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhh
Confidence 4677888888999999999999999999988887764 44556666778888888998876443
No 183
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=24.68 E-value=3.6e+02 Score=23.42 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=11.8
Q ss_pred HHHHHHHhhhhhhhhhhc
Q psy1201 56 AFLVFSVCDYLGRFIAGY 73 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~ 73 (179)
......++..+|+.+.++
T Consensus 302 ~~~~~~~~~~i~~~~~g~ 319 (465)
T TIGR00894 302 LSSLPYLFAWLCSIFAGY 319 (465)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666777777777654
No 184
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=24.37 E-value=2.5e+02 Score=23.75 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhhhhhhhhcc
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL 74 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~ 74 (179)
.....++++..+++...++.
T Consensus 42 ~~~~~~~l~~~i~~~~~G~l 61 (396)
T TIGR00882 42 IVFSCISLFSILFQPLFGLI 61 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36788999999998877763
No 185
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=23.99 E-value=2e+02 Score=26.17 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=28.4
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHH
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGL 165 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl 165 (179)
++.+.....++.|+.|+=.=--....|-+..+ ++-|.+|.+.+.+..-|-
T Consensus 323 ~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~maivGGA 372 (422)
T COG0738 323 GGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVMAIVGGA 372 (422)
T ss_pred cChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceeeeeheecch
Confidence 33555555556666665554444455555555 666677766665555444
No 186
>PRK09528 lacY galactoside permease; Reviewed
Probab=22.89 E-value=2.7e+02 Score=23.87 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccceeeeeeecCCCCCCCCcccchHHHHHHHHHHhhhhhhhhhhcc
Q psy1201 10 SIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYL 74 (179)
Q Consensus 10 ~~~~~~~~ifl~f~vTl~vFPgi~~~i~s~~~~~~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~ 74 (179)
..|...+..++.++.+-..+|-+....+++. +|+... .. ..+..+.+++.+++...++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----g~s~~~-~g-~~~s~~~l~~~i~~~~~G~l 69 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDIN----GLSGTD-TG-IIFSANSLFALLFQPLYGLI 69 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCHHH-HH-HHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544445555554444322 132111 23 36889999999988887763
No 187
>PRK10054 putative transporter; Provisional
Probab=22.88 E-value=4.7e+02 Score=22.34 Aligned_cols=53 Identities=8% Similarity=-0.044 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 119 YATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 119 ~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
..+...++++..+..........-+.++++.+..+-...+ ....|..+|..++
T Consensus 301 ~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~ 353 (395)
T PRK10054 301 WGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVS 353 (395)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHH
Confidence 3445566666655544333333333334333322211111 2224666665444
No 188
>PLN02558 CDP-diacylglycerol-glycerol-3-phosphate/ 3-phosphatidyltransferase
Probab=21.49 E-value=1.8e+02 Score=23.52 Aligned_cols=39 Identities=10% Similarity=0.208 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhh
Q psy1201 86 LFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSN 130 (179)
Q Consensus 86 ~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tn 130 (179)
.+++.|++.+|.|+..-..++. .+.+....+.++-++|.
T Consensus 14 ~LT~~RI~liP~~~~l~~~~~~------~~~~~A~~lf~~a~lTD 52 (203)
T PLN02558 14 VLTLGRVAAVPLLVATFYVDSW------WGRTATTSIFIAAAITD 52 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHhch------hHHHHHHHHHHHHHHHH
Confidence 4677899999999876543211 12344555555666665
No 189
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=21.33 E-value=3.7e+02 Score=24.24 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhcccCCCChhh--HHHHHHHHHHHHHHHHHHHHH
Q psy1201 120 ATIVLLMGLSNGYLANITFICAAKQVDPHE--QEVASAMMVLSLGVGLAGGSG 170 (179)
Q Consensus 120 ~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~--~e~aG~~m~~~l~~Gl~~Gs~ 170 (179)
++...+.|+.+|-..........+..+++| |+.+-.+.....+.|-.+|..
T Consensus 109 ~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~ 161 (489)
T PRK10207 109 FIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLS 161 (489)
T ss_pred HHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHH
Confidence 345667788888775544444445554443 344555666777777776644
No 190
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=20.39 E-value=2.2e+02 Score=23.74 Aligned_cols=58 Identities=5% Similarity=-0.092 Sum_probs=40.0
Q ss_pred cchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 114 TSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL 171 (179)
Q Consensus 114 ~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~ 171 (179)
++-..+.+-.++.|..++.+-+.+.-|....-++|+++..=+++-.+-..|..+|-.+
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i 65 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLF 65 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHH
Confidence 4556677788889999999999999888777666666655455555555555554433
Done!