Query psy1201
Match_columns 179
No_of_seqs 111 out of 556
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 16:22:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 95.3 0.12 4.2E-06 42.9 9.9 109 55-172 66-175 (451)
2 2xut_A Proton/peptide symporte 94.8 0.15 5E-06 43.7 9.3 106 55-172 58-168 (524)
3 1pw4_A Glycerol-3-phosphate tr 94.4 0.28 9.7E-06 40.6 9.8 109 55-172 292-403 (451)
4 3o7q_A L-fucose-proton symport 93.9 0.42 1.4E-05 39.5 10.0 111 55-175 65-176 (438)
5 2gfp_A EMRD, multidrug resista 92.7 0.11 3.9E-06 42.3 4.5 106 55-173 39-145 (375)
6 4aps_A DI-OR tripeptide H+ sym 89.4 1.7 5.9E-05 36.5 8.8 105 55-172 58-166 (491)
7 4gc0_A D-xylose-proton symport 81.7 21 0.00072 29.6 12.5 116 56-175 60-185 (491)
8 3o7q_A L-fucose-proton symport 80.9 13 0.00044 30.2 10.0 99 56-170 300-399 (438)
9 4aps_A DI-OR tripeptide H+ sym 79.8 7.3 0.00025 32.5 8.2 58 115-172 385-442 (491)
10 2xut_A Proton/peptide symporte 56.1 4.8 0.00017 34.0 2.0 58 115-172 404-461 (524)
11 2cfq_A Lactose permease; trans 50.8 27 0.00091 28.7 5.7 55 115-169 311-366 (417)
12 2gfp_A EMRD, multidrug resista 42.4 6.9 0.00024 31.4 0.7 54 115-169 290-343 (375)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=95.27 E-value=0.12 Score=42.85 Aligned_cols=109 Identities=17% Similarity=0.045 Sum_probs=73.6
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
.....+.++..+|..+.++. ..- .+++.+....+...+.. +++...+ ..-++-+..++..++.|+..|-.
T Consensus 66 ~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~---~~~~~~~-----~~~~~~~~l~~~~~l~G~~~~~~ 136 (451)
T 1pw4_A 66 FALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVM---LFMGFVP-----WATSSIAVMFVLLFLCGWFQGMG 136 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH---HHHHHCH-----HHHSSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHHH---HHHHhhh-----hccccHHHHHHHHHHHHHHhhhc
Confidence 35778999999988887753 222 22333333333332222 2222100 00124456777888999999999
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
......+.++..++++|..+-.+......+|..+|..++
T Consensus 137 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 137 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred cchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888888888888887776
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=94.78 E-value=0.15 Score=43.71 Aligned_cols=106 Identities=17% Similarity=0.126 Sum_probs=67.3
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cCC-CCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QWP-RNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGY 132 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~~-~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGy 132 (179)
.....+.++..+|....++. +.- ++ ++.+....+...+. .+++...+ .+-+..++..++.|+..|-
T Consensus 58 ~~~~~~~~~~~~~~~~~G~l~dr~~g~-r~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~~~~~~l~g~~~~~ 125 (524)
T 2xut_A 58 DVFHSFVIGVYFFPLLGGWIADRFFGK-YNTILWLSLIYCVG---HAFLAIFE--------HSVQGFYTGLFLIALGSGG 125 (524)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHTTSSCS-HHHHHHHHHHHHHH---HHHHHHTS--------SCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHH---HHHHHHhc--------ccHHHHHHHHHHHHHhccc
Confidence 36778999999998887763 222 23 23333333222222 22222111 1446667778889999999
Q ss_pred hhhhhhhcccCCCChhhHHHHHHH---HHHHHHHHHHHHHHHH
Q psy1201 133 LANITFICAAKQVDPHEQEVASAM---MVLSLGVGLAGGSGLG 172 (179)
Q Consensus 133 l~tl~m~~ap~~v~~~~~e~aG~~---m~~~l~~Gl~~Gs~~s 172 (179)
.......+..+..++++|..+... .....+.|..+|..++
T Consensus 126 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 126 IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM 168 (524)
T ss_dssp THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888888998888888766666 5566667777666543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=94.35 E-value=0.28 Score=40.57 Aligned_cols=109 Identities=13% Similarity=0.135 Sum_probs=68.0
Q ss_pred HHHHHHHHhhhhhhhhhhcc--cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL--QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGY 132 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~--~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGy 132 (179)
.....+.++..+|+.+..+. ++.+.+++.+......-. .+-+.+ ....+. .+.+...+..+++|+..|.
T Consensus 292 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~-------~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 292 WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV-TIATIV-YWMNPA-------GNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH-HHHHHH-TTSCCT-------TCHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH-HHHHHH-HHHhcc-------cCHHHHHHHHHHHHHHHhc
Confidence 36778899999999988764 221122232222211111 011221 211111 2556677788888988888
Q ss_pred hhhhhhhcccCCCChhhHHHHHHHHHHHHHH-HHHHHHHHH
Q psy1201 133 LANITFICAAKQVDPHEQEVASAMMVLSLGV-GLAGGSGLG 172 (179)
Q Consensus 133 l~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~-Gl~~Gs~~s 172 (179)
..+....+..+..++++|..+-.+....... |..+|..+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 403 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 403 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8877778888888888888888888777777 877776553
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=93.91 E-value=0.42 Score=39.47 Aligned_cols=111 Identities=9% Similarity=-0.069 Sum_probs=74.2
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
.....+.++..+|....++. +.-+ +++.+....+.-.+..-+...... -++-+..++..++.|+..|-.
T Consensus 65 ~~~~~~~~~~~i~~~~~G~l~dr~g-~r~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~ 134 (438)
T 3o7q_A 65 LIQSAFYFGYFIIPIPAGILMKKLS-YKAGIITGLFLYALGAALFWPAAE---------IMNYTLFLVGLFIIAAGLGCL 134 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhc-chHHHHHHHHHHHHHHHHHHhccc---------cccHHHHHHHHHHHHhhHHHh
Confidence 36788999999988887753 2222 223332222222211111111021 235567788889999999999
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFK 175 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~ 175 (179)
.+....+..+..++|+|..+-.+......+|..+|..++-.+
T Consensus 135 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 135 ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred hhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888888888888888776443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=92.65 E-value=0.11 Score=42.26 Aligned_cols=106 Identities=8% Similarity=0.006 Sum_probs=69.7
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL 133 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl 133 (179)
.....+.++..++.....+. +.-++| +.+....+...+...+... .++-+...+..++.|+..|..
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~dr~g~r-~~~~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~l~g~~~~~~ 105 (375)
T 2gfp_A 39 SVMGAYLLTYGVSQLFYGPISDRVGRR-PVILVGMSIFMLATLVAVT------------TSSLTVLIAASAMQGMGTGVG 105 (375)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHTTSCCC-CCCHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHHHHHHH------------hccHHHHHHHHHHHHHHHHhh
Confidence 36788999999998887753 222233 2332333333333222211 134566777788889999988
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL 173 (179)
Q Consensus 134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~ 173 (179)
.+....+.++..++|||..+..+.......|..+|..++-
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 145 (375)
T 2gfp_A 106 GVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG 145 (375)
T ss_dssp HHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 8888888888777778887777777777788777776653
No 6
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=89.41 E-value=1.7 Score=36.49 Aligned_cols=105 Identities=12% Similarity=0.161 Sum_probs=67.0
Q ss_pred HHHHHHHHhhhhhhhhhhcc-cC-CCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhh
Q psy1201 55 IAFLVFSVCDYLGRFIAGYL-QW-PRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGY 132 (179)
Q Consensus 55 i~~~~fnlgD~iGR~~~~~~-~~-~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGy 132 (179)
.....+.++-.+|..+.++. .. -+ +++.+... -++.....+++... +|.+..++..++.|+..|-
T Consensus 58 ~~~~~~~~~~~~~~~~~g~l~dr~~g-~r~~~~~~---~~~~~~~~~~~~~~---------~~~~~~~~~~~l~g~~~~~ 124 (491)
T 4aps_A 58 SIMAIYASMVYLSGTIGGFVADRIIG-ARPAVFWG---GVLIMLGHIVLALP---------FGASALFGSIILIIIGTGF 124 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSC-HHHHHHHH---HHHHHHHHHHHHSC---------CSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc-chHHHHHH---HHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHh
Confidence 36788999999999888764 22 22 22322222 23333333334321 3556777888899999998
Q ss_pred hhhhhhhcccCCCChhh--HHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 133 LANITFICAAKQVDPHE--QEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 133 l~tl~m~~ap~~v~~~~--~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
..+....+..+..++++ |..+-.......++|..+|..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 125 LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 88888888888777776 55555555566777777766554
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=81.74 E-value=21 Score=29.56 Aligned_cols=116 Identities=11% Similarity=0.066 Sum_probs=78.0
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCC--------CCCccc-cchhHHHHHHHH
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRT--------HLPVLI-TSDLVYATIVLL 125 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~--------~~p~~~-~~d~~~~~~~~l 125 (179)
....|.+|-.+|-.+.++. ..- .||..+.++ =+++.-.-++|...+.. ..+... +|-+..++.=++
T Consensus 60 ~~s~~~~G~~iG~~~~G~laDr~--GRk~~l~~~--~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l 135 (491)
T 4gc0_A 60 CVASALIGCIIGGALGGYCSNRF--GRRDSLKIA--AVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRII 135 (491)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHT--CHHHHHHHH--HHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHH--HHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHH
Confidence 4567888888888777653 222 223332222 22333333445432211 111222 344566777889
Q ss_pred HHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201 126 MGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFK 175 (179)
Q Consensus 126 fg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~ 175 (179)
.|+..|-..+.+..+.-|..++++|...+.+...+...|...+...+...
T Consensus 136 ~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~ 185 (491)
T 4gc0_A 136 GGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI 185 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence 99999999999999999999999999999999999999998888877654
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=80.94 E-value=13 Score=30.23 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=50.8
Q ss_pred HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201 56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA 134 (179)
Q Consensus 56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~ 134 (179)
....+.++..+|+.+..+. +.- .+++.+.... ++.....++... .++....+..+++++..|-..
T Consensus 300 ~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~---~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~~~~~ 365 (438)
T 3o7q_A 300 YLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYA---LIAMALCLISAF----------AGGHVGLIALTLCSAFMSIQY 365 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHH---HHHHHHHHHHHH----------CCHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHH---HHHHHHHHHHHH----------cCCcHHHHHHHHHHHHHHHHH
Confidence 4556777788888777653 221 2223222222 112222222221 122334455577788887777
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy1201 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSG 170 (179)
Q Consensus 135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~ 170 (179)
.....+..+..+++ +..+..++.. -.+|-.+|..
T Consensus 366 ~~~~~~~~~~~~~~-~~~~~~~~~~-~~~g~~~~~~ 399 (438)
T 3o7q_A 366 PTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTP 399 (438)
T ss_dssp HHHHHHHHSSCGGG-HHHHHHHHHH-TTHHHHHHHH
T ss_pred HHHHHHHHhhcccc-ccchhhHHHH-HHHHHHHHHH
Confidence 77777777877766 5544444443 3344444443
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=79.82 E-value=7.3 Score=32.52 Aligned_cols=58 Identities=21% Similarity=0.087 Sum_probs=48.3
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+.++..+..++.|+..|......+.+..+..++++|..+..+....-..|..+|+.+.
T Consensus 385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~ 442 (491)
T 4aps_A 385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV 442 (491)
T ss_dssp CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888899999998888888888888888888888888888888888887765
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=56.05 E-value=4.8 Score=34.04 Aligned_cols=58 Identities=14% Similarity=-0.046 Sum_probs=45.5
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s 172 (179)
+-++..+..+++|+..|........+..+.+++++|..+..+.......|-.+|..++
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~ 461 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLAN 461 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677788899999998888888888888888888777777777777777776654
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=50.81 E-value=27 Score=28.73 Aligned_cols=55 Identities=13% Similarity=-0.006 Sum_probs=32.2
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHH-HHHHHHHHHHHHH
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAM-MVLSLGVGLAGGS 169 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~-m~~~l~~Gl~~Gs 169 (179)
+.+...+...+.++..+-.......+.++..+++.|..+... +...-..|-.+|.
T Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp 366 (417)
T 2cfq_A 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMS 366 (417)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 445555555666666655555556677887888877765444 3444445544443
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=42.37 E-value=6.9 Score=31.38 Aligned_cols=54 Identities=13% Similarity=-0.011 Sum_probs=37.6
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy1201 115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGS 169 (179)
Q Consensus 115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs 169 (179)
+.+..++..+++++..|........+..+..+ |+|..+-.+....-..|-.+|+
T Consensus 290 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~ 343 (375)
T 2gfp_A 290 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLA 343 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCS
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHH
Confidence 44556677888899888888877777777765 6676666666666666655544
Done!