RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1201
         (179 letters)



>gnl|CDD|233199 TIGR00939, 2a57, Equilibrative Nucleoside Transporter (ENT).
           [Transport and binding proteins, Nucleosides, purines
           and pyrimidines].
          Length = 437

 Score =  143 bits (363), Expect = 2e-41
 Identities = 67/165 (40%), Positives = 100/165 (60%), Gaps = 4/165 (2%)

Query: 10  SIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRF 69
            +W+   +V   F V+LS++P+IT+ V S+    + W    F P+I FL+F++ D+LGR 
Sbjct: 270 KVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNW----FYPIICFLLFNLFDWLGRS 325

Query: 70  IAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLS 129
           +     WP  +  W+ + S  R +F+PL LLCN   R+ LPV    D  +  ++LL G S
Sbjct: 326 LTSKFMWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFS 385

Query: 130 NGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF 174
           NGYL +++   A +QVDPHE+EVA A+MV+ L VGLA G+ L   
Sbjct: 386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430


>gnl|CDD|216670 pfam01733, Nucleoside_tran, Nucleoside transporter.  This is a
           family of nucleoside transporters. In mammalian cells
           nucleoside transporters transport nucleoside across the
           plasma membrane and are essential for nucleotide
           synthesis via the salvage pathways for cells that lack
           their own de novo synthesis pathways. Also in this
           family is mouse and human nucleolar protein HNP36, a
           protein of unknown function; although it has been
           hypothesised to be a plasma membrane nucleoside
           transporter.
          Length = 305

 Score =  136 bits (343), Expect = 1e-39
 Identities = 66/161 (40%), Positives = 99/161 (61%), Gaps = 4/161 (2%)

Query: 10  SIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRF 69
              +  L+V L F V+LS++P+ T+ V S+ P    W  +YF PV+ FL+F++ D LGR 
Sbjct: 140 KFPVLALSVVLIFTVTLSVFPAPTAEVVSSLP---TWEKQYFMPVLCFLLFNLFDLLGRS 196

Query: 70  IAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTH-LPVLITSDLVYATIVLLMGL 128
           +A +  WP  +  W+ + SI R +F+PL LLCN +P++  LPV   SD ++  ++ L   
Sbjct: 197 LAAWFMWPGQDPRWLPVLSILRLLFIPLFLLCNYKPQSRALPVFFESDWLFIILMALFAF 256

Query: 129 SNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGS 169
           SNGYL+++  + A KQV PHE E A  + V  L +GLA GS
Sbjct: 257 SNGYLSSLAMMYAPKQVPPHEAETAGMITVFFLILGLALGS 297


>gnl|CDD|215358 PLN02666, PLN02666, 5-oxoprolinase.
          Length = 1275

 Score = 30.8 bits (70), Expect = 0.43
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 9/50 (18%)

Query: 24  VSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGY 73
           VSLS   ++  +V++    HT   D Y TPVI        +YL  F++G+
Sbjct: 222 VSLS--SALVPMVRAVPRGHTASVDAYLTPVIK-------EYLSGFLSGF 262


>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
           cotransporter.  [Transport and binding proteins,
           Anions].
          Length = 465

 Score = 28.2 bits (63), Expect = 3.0
 Identities = 5/30 (16%), Positives = 13/30 (43%)

Query: 7   AYGSIWMHGLAVCLCFLVSLSLYPSITSLV 36
            Y   W  G+ + L  ++S+ +  +    +
Sbjct: 102 KYVFKWSIGIGMFLSSVISIVIPWAAGGGI 131


>gnl|CDD|226453 COG3944, COG3944, Capsular polysaccharide biosynthesis protein
           [Cell envelope biogenesis, outer membrane].
          Length = 226

 Score = 27.7 bits (62), Expect = 3.0
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 157 MVLSLGVGLAGGSGLGLFKDY 177
           +V++   GLAG  G+    +Y
Sbjct: 176 IVIAFLAGLAGAIGIAFLLEY 196


>gnl|CDD|238217 cd00367, PTS-HPr_like, Histidine-containing phosphocarrier protein
           (HPr)-like proteins. HPr is a central component of the
           bacterial phosphoenolpyruvate sugar phosphotransferase
           system (PTS). The PTS catalyses the phosphorylation of
           sugar substrates during their translocation across the
           cell membrane. The phosphoryl group from
           phosphoenolpyruvate is transferred to HPr by enzyme I
           (EI). Phospho-HPr then transfers the phosphoryl group to
           one of several sugar-specific phosphoprotein
           intermediates. The conserved histidine in the N-terminus
           of HPr serves as an acceptor for the phosphoryl group of
           EI. In addition to the phosphotransferase proteins HPr
           and E1, this family also includes the closely related
           Carbon Catabolite Repressor (CCR) proteins which use the
           same phosphorylation mechanism and interact with
           transcriptional regulators to control expression of
           genes coding for utilization of less favored carbon
           sources.
          Length = 77

 Score = 25.5 bits (57), Expect = 5.8
 Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 5/41 (12%)

Query: 124 LLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVG 164
           LL+ L++ + ++IT     ++ +       S + ++SLG  
Sbjct: 17  LLVQLASKFKSDITLRKGGRKANA-----KSILGLMSLGAK 52


>gnl|CDD|222441 pfam13898, DUF4205, Domain of unknown function (DUF4205).  The
           proteins in this family are uncharacterized but often
           named FAM188B.
          Length = 341

 Score = 26.9 bits (60), Expect = 6.7
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 37  KSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSIS 90
              SP      D   T  +    F+  + L  F+  +L      G   +LF  S
Sbjct: 108 SQFSPAGRYKQDN-LTEKLMLFTFTKLEELQAFLYEHLSQFETGGHGCILFLYS 160


>gnl|CDD|217064 pfam02487, CLN3, CLN3 protein.  This is a family of proteins from
           the CLN3 gene. A missense mutation of glutamic acid (E)
           to lysine (K) at position 295 in the human protein has
           been implicated in Juvenile neuronal ceroid
           lipofuscinosis (Batten disease).
          Length = 409

 Score = 26.7 bits (59), Expect = 8.3
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 122 IVLLMGLSNGYLANITFICAAKQVDPHEQE--VASAMMVLSLGVGLAGGSGLGL 173
           ++L  GL  G     TF    K+VDP  +E  + +A +  SLGV LA    L L
Sbjct: 348 LILFEGLLGGASYVNTFHNIHKEVDPDVREFAMGAASISDSLGVNLAALLALPL 401


>gnl|CDD|147863 pfam05941, Chordopox_A20R, Chordopoxvirus A20R protein.  This
           family consists of several Chordopoxvirus A20R proteins.
           The A20R protein is required for DNA replication, is
           associated with the processive form of the viral DNA
           polymerase, and directly interacts with the viral
           proteins encoded by the D4R, D5R, and H5R open reading
           frames. A20R may contribute to the assembly or stability
           of the multiprotein DNA replication complex.
          Length = 334

 Score = 26.5 bits (59), Expect = 9.4
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 11/69 (15%)

Query: 48  DKYFTPVI-AFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPR 106
           ++YF  ++  F + S+C  +     G  +  R     V+ F    +V +  + L  I   
Sbjct: 184 ERYFLAIMDGFYINSLC-CIRE---GTSE--R----NVIDFFKRGYVCVKSIELEKIGDN 233

Query: 107 THLPVLITS 115
             LP LIT 
Sbjct: 234 LFLPKLITF 242


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.329    0.142    0.460 

Gapped
Lambda     K      H
   0.267   0.0757    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,259,341
Number of extensions: 853639
Number of successful extensions: 1288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1275
Number of HSP's successfully gapped: 66
Length of query: 179
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 88
Effective length of database: 6,901,388
Effective search space: 607322144
Effective search space used: 607322144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.3 bits)