RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1201
(179 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.15
Identities = 36/200 (18%), Positives = 68/200 (34%), Gaps = 56/200 (28%)
Query: 5 VIAYGSIWMHGLAVCLCFLVSLSLYPSITSL---VKSTSPVHTE--WTDKYFTPVIAFLV 59
+++GS+ H LV + + + L P TE D T LV
Sbjct: 10 TLSHGSL-EHV------LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE-LV 61
Query: 60 FSVCDYLGRFIAGYLQWPRNNGWW--VLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDL 117
+LG +++ ++ P G + VL ++ F +L +D
Sbjct: 62 GK---FLG-YVSSLVE-PSKVGQFDQVLNLCLTEFE------------NCYLE---GND- 100
Query: 118 VYATIVLLMGLSNGYLANITFIC----AAKQV--DPHEQEVASAMM--VLSLGVGLA--- 166
++A L+ ++ L + A+ + P +++ SA+ V L
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 167 GGSGLG---------LFKDY 177
GG G L++ Y
Sbjct: 161 GGQGNTDDYFEELRDLYQTY 180
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 29.2 bits (64), Expect = 0.91
Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 9/84 (10%)
Query: 36 VKSTSPVHTEWTDKYFT------PVIAFLVFSVCDYLGRFIAGYLQWPRN--NGW-WVLL 86
+ + + + +K F P +A + V + G+FI + G+ V L
Sbjct: 691 IIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEENGKFIGHRVMPLDGIKPGYRHVPL 750
Query: 87 FSISRFVFMPLVLLCNIQPRTHLP 110
+ S + +I + ++
Sbjct: 751 RNESNRPLGLASVFAHIVAKDYVS 774
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 28.4 bits (62), Expect = 1.4
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 36 VKSTSPVHTEWTDKYFT------PVIAFLVFSVCDYLGRFIAGYLQWPRN--NGW-WVLL 86
+ + W ++ F P +A L + + G+F+ + +G+ +V L
Sbjct: 765 TSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEGGKFVGHRILPVSAIRSGYHYVCL 824
Query: 87 FSISRFVFMPLVLLCNIQPRTHLP 110
+ + LL + ++P
Sbjct: 825 RNEANQPLCLPALLIYTEASDYIP 848
>1pch_A Phosphocarrier protein; phosphotransferase; 1.80A {Mycoplasma
capricolum} SCOP: d.94.1.1
Length = 88
Score = 26.4 bits (59), Expect = 2.3
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 124 LLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVG 164
+L ++ + +NIT I KQ + + S M V+++ +
Sbjct: 20 VLAKEASKFSSNITIIANEKQGN-----LKSIMNVMAMAIK 55
>1ka5_A Phosphocarrier protein HPR; open faced beta-sandwich, structural
proteomics in europe, spine, structural genomics, ligand
transport; NMR {Staphylococcus aureus} SCOP: d.94.1.1
PDB: 1qr5_A 1txe_A
Length = 88
Score = 26.0 bits (58), Expect = 2.8
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 124 LLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVG 164
+L+ ++ + ++I K+V+ + S M V+SLGVG
Sbjct: 21 MLVQTASKFDSDIQLEYNGKKVN-----LKSIMGVMSLGVG 56
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 27.5 bits (61), Expect = 2.8
Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 58 LVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVF---MPLVLLC 101
+ I ++ P +W +F+I F+F +P++++
Sbjct: 260 AIMGSAQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVIS 306
>3ccd_A Phosphocarrier protein HPR; succinimide, isoaspartate, protein
damage, autophosphatase, transferase; 1.00A {Escherichia
coli} PDB: 1cm3_A 1cm2_A 1ggr_B 1hdn_A 1j6t_B 1pfh_A*
1poh_A 1vrc_C 2jel_P 2xdf_C 3eza_B 3ezb_B 3eze_B 1opd_A
Length = 85
Score = 26.0 bits (58), Expect = 3.1
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 5/41 (12%)
Query: 124 LLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVG 164
+ + G+ + IT K S + +LG+
Sbjct: 21 QFVKEAKGFTSEITVTSNGKSASA-----KSLFKLQTLGLT 56
>3ihs_A Phosphocarrier protein HPR; dimerization domain SWAP beta strand,
IDP01131, structural genomics; HET: MSE; 1.15A {Bacillus
anthracis} PDB: 1zvv_W* 1mo1_A 1mu4_A 2rlz_A 2ak7_A*
1k1c_A
Length = 106
Score = 25.8 bits (57), Expect = 4.3
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 124 LLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVG 164
L + +N + A+I K V+ S M ++SL +G
Sbjct: 45 LFVQEANRFHADIFIEKDGKTVN-----AKSIMGIMSLAIG 80
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane
protein; NMR {Aeropyrum pernix}
Length = 147
Score = 25.3 bits (55), Expect = 8.6
Identities = 8/50 (16%), Positives = 19/50 (38%)
Query: 22 FLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIA 71
+ +L I +V+ T + E+ + + + ++ DY R
Sbjct: 26 GVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYK 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.142 0.460
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,792,812
Number of extensions: 155129
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 18
Length of query: 179
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 92
Effective length of database: 4,272,666
Effective search space: 393085272
Effective search space used: 393085272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.8 bits)