RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1201
         (179 letters)



>d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain 3
           {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 348

 Score = 24.6 bits (52), Expect = 9.2
 Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 54  VIAFLVFSVCDYLGR---FIAGYLQWPRNNGWWVLLFSI 89
           +    +    +   R   +  G L W  N+ W V+ +S 
Sbjct: 290 LQGQGMRHGLEAHRRNRPYCMGTLYWQLNDSWPVVSWSS 328


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.142    0.460 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 681,676
Number of extensions: 28645
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 5
Length of query: 179
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 99
Effective length of database: 1,309,196
Effective search space: 129610404
Effective search space used: 129610404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.4 bits)