BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12010
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
+ C CGK + K L+RH+R G++P Y+CP+C SQ+A L+ H
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAHQ 97
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 17 EYSFNWPEVHLNESDFINWPTVRQYNSGMFP--CDVCGKKYKYKWGLSRHKRDECGQEPK 74
E + PE + SD + ++ ++G P C CGK + + L H+R G++P
Sbjct: 47 EKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKP- 105
Query: 75 YQCPQCPYRASQKATLKTHM 94
Y CP+C SQ A L+ H
Sbjct: 106 YACPECGKSFSQLAHLRAHQ 125
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 17 EYSFNWPEVHLNESDFINWPTVRQYNSGMFP--CDVCGKKYKYKWGLSRHKRDECGQEPK 74
E + PE + S N ++ ++G P C CGK + L H+R G++P
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP- 133
Query: 75 YQCPQCPYRASQKATLKTHM 94
Y+CP+C S++ L TH
Sbjct: 134 YKCPECGKSFSREDNLHTHQ 153
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 17 EYSFNWPEVHLNESDFINWPTVRQYNSGMFP--CDVCGKKYKYKWGLSRHKRDECGQEPK 74
E + PE + S + ++ ++G P C CGK + + L H+R G++P
Sbjct: 103 EKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKP- 161
Query: 75 YQCPQCPYRASQKATLKTHM 94
Y+CP+C S++ L H
Sbjct: 162 YKCPECGKSFSRRDALNVHQ 181
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
+ C CGK + L+ H+R G++P Y+CP+C S K L H
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRHQ 69
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKH 98
C CGK ++ + L+ H R G++P Y+C C Y A+QK +L+ H+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 42 NSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
+SG C+VCGK + K L H R G +P Y+C C Y A+ ++L H+ I
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRI 58
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
F C+ CGK Y+ GLSRH+R G P+ CP+C ++ + H+ +
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPR-SCPECGKCFRDQSEVNRHLKV 54
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 42 NSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
S C++CGK ++ + L+RHK G++P Y CP C R +K + H+
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHV 55
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPK-YQCPQCPYRASQKATLKTHMAIKHS 99
+ C VCG ++K K +S H R G K Y C C S+ L H+ HS
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
+ CD CGK + + LS+H+R G++P Y+C +C Q++ L H +
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGHHRV 68
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
+ CD C ++YK L+ HK G++P Y+C C + ++ A LKTH I
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRI 67
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
+ C CGK + L +H+R G++P Y+CP+C SQ + L+ H
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKP-YKCPECGKSFSQSSDLQKHQRT 54
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 17 EYSFNWPEVHLNESDFINWPTVRQYNSGMFP--CDVCGKKYKYKWGLSRHKRDECGQEPK 74
E + PE + S N ++ ++G P C CGK + L +H+R G++P
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP- 60
Query: 75 YQCPQCPYRASQKATLKTHMAI 96
Y+CP+C S+ L H
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRT 82
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 45 MFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS 99
+F C VC + ++ + L H G+ P Y+C C + QK L++HM HS
Sbjct: 66 VFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 42 NSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMA 95
S C C KK+ K+ L H R G++P ++CP+C +K L H A
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHEA 56
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 75 YQCPQCPYRASQKATLKTHMAIKHS 99
YQC C YR++ + LKTH+ KHS
Sbjct: 3 YQCQYCEYRSADSSNLKTHIKTKHS 27
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTH 93
+PC CGK++ K + +H G++P ++C C SQ + L TH
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKCQVCGKAFSQSSNLITH 76
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
F C +CGK +K LS H P Y C C R QK+ +K H I
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFI 51
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 75 YQCPQCPYRASQKATLKTHMAIKHS 99
YQC C +R++ + LKTH+ KHS
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHS 27
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 47 PCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
P + C +++ L+RH R GQ+P +QC C S+ L TH+
Sbjct: 23 PVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 69
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS 99
+ C CGK + L +H+R G++P Y+C +C SQ + L H I S
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINHQRIHTS 67
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 47 PCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
P + C +++ L+RH R GQ+P +QC C S+ L TH+
Sbjct: 8 PVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 47 PCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
P + C +++ L+RH R GQ+P +QC C S+ L TH+
Sbjct: 8 PVESCDRRFSRSADLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYR 83
+ C VCGKK+K K L H + G +P Y+C C R
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKR 74
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 47 PCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
P + C +++ L+RH R GQ+P +QC C S+ L TH+
Sbjct: 8 PVESCDRRFSDSSNLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 47 PCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
P + C +++ L+RH R GQ+P +QC C S+ L TH+
Sbjct: 8 PVESCDRRFSRSAELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 75 YQCPQCPYRASQKATLKTHMAIKHS 99
YQC C R++ + LKTH+ KHS
Sbjct: 3 YQCQYCELRSADSSNLKTHIKTKHS 27
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 75 YQCPQCPYRASQKATLKTHMAIKHS 99
YQC C R++ + LKTH+ KHS
Sbjct: 3 YQCQYCEXRSADSSNLKTHIKTKHS 27
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 46 FPCDVCGKKYKYKWGLSRH 64
+ CD+CGK+YK + GLS H
Sbjct: 8 YACDICGKRYKNRPGLSYH 26
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 47 PCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
P + C +++ L+RH R GQ+P +QC C S+ L TH+
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 47 PCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
P + C +++ L+RH R GQ+P +QC C S+ L TH+
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 47 PCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
P + C +++ L+RH R GQ+P +QC C S+ L TH+
Sbjct: 7 PVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 53
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
+ C VCGK + ++ LS H+R G++P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 51 CGKKYKYKWGLSRHKRDECGQEPKYQCP--QCPYRASQKATLKTHM 94
CGK++ + L H R G P Y CP C + +Q LK+H+
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRP-YVCPFDGCNKKFAQSTNLKSHI 114
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCP--QCPYRASQKATLKTHMAI 96
C CGK + L RH+ G++P +QC C R S L+TH+ I
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFNLRTHVRI 86
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
+ CDVC K ++Y L+ H+R G++P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 75 YQCPQCPYRASQKATLKTHM 94
Y+CPQC Y ++ KA L H+
Sbjct: 10 YKCPQCSYASAIKANLNVHL 29
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 30 SDFINWPTVRQYNSGM--FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQK 87
S N T + ++G F C +C + + GL++H R G++P + C C + +
Sbjct: 17 SQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP-FACDICGRKFATL 75
Query: 88 ATLKTHMAI 96
T H I
Sbjct: 76 HTRDRHTKI 84
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
+ C+ CGK +++ LSRH+R G++P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 75 YQCPQCPYRASQKATLKTHMAIKHS 99
YQC C R + + LKTH+ KHS
Sbjct: 3 YQCQYCEKRFADSSNLKTHIKTKHS 27
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
+ CDVC K + + L++H+R G++P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ 79
C++CGK ++ + L+RHK G++P P
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 49 DVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
D CG K+ L+RH R G P +QC +C S+ L HM
Sbjct: 42 DGCGWKFARSDELTRHYRKHTGHRP-FQCQKCDRAFSRSDHLALHM 86
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
+ CDVCGK++ L H+R G++P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 49 DVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
D CG K+ L+RH R G P +QC +C S+ L HM
Sbjct: 41 DGCGWKFARSDELTRHYRKHTGHRP-FQCQKCDRAFSRSDHLALHM 85
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
+PC++CG ++++ L H R G P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS 99
F C+VC + + + L RH R ++P Y C C +++ L H HS
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQKIHS 55
>pdb|4IJD|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Pr
Domain- Containing Protein 9
pdb|4IJD|B Chain B, Crystal Structure Of Methyltransferase Domain Of Human Pr
Domain- Containing Protein 9
Length = 221
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 49 DVCGKKYKYKWGLSRHKRDECGQEPKYQ---CPQCPYRASQKATLKTHMAIKHS 99
D G++ KWG K G+EPK + CP C S + L H+ HS
Sbjct: 165 DEYGQELGIKWGSKWKKELXAGREPKPEIHPCPSCCLAFSSQKFLSQHVERNHS 218
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
F C CGK Y + L++H+R G++P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
+ CD CGK + L RH+R G++P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
+ C+ CGK + K L+RH+R G++P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
F C CGK + GL++H+R G++P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
+ C+ CGK + K LS H+R G++P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 48 CDVCGKKYKYKWGLSRHK 65
CD+CGKK+K K L HK
Sbjct: 12 CDMCGKKFKSKGTLKSHK 29
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 46 FPCDV--CGKKYKYKWGLSRHKRDECGQEP-KYQCPQCPYRASQKATLKTHMAI 96
FPC CGK + L HKR G++P K + C R + + K HM +
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
F C+ CGK + + LS+H+ G+ P
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 66 RDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS 99
R G++P Y+C C R +Q T+K H+ KH+
Sbjct: 8 RTHSGEKP-YECYICHARFTQSGTMKMHILQKHT 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
+ C+ CGK + L+RH+R G++P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
+ C+ CGK + L+RH+R G++P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|3ZEY|4 Chain 4, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 202
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 41 YNSGMFPCDVCGKKYKYK 58
N ++PCDV G++++Y+
Sbjct: 131 LNDLIYPCDVVGRRWRYR 148
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
F C CGK + K LS H++ G++P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 42 NSGMFPCDV--CGKKYKYKWGLSRHKRDECGQEPKYQCPQ--CPYRASQKATLKTHMAI 96
+SGM PCD CG+ + + L+ HK+ + + + CP+ C + K LK HM +
Sbjct: 5 SSGM-PCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
>pdb|1I6V|D Chain D, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
Length = 1264
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 16 PEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKY 75
PE +W + + + IN+ T++ G+F + G Y+ ++KR E K
Sbjct: 15 PEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQRF--EAKV 72
Query: 76 QCPQCPYRASQKATLKTHMA 95
C +C ++ + MA
Sbjct: 73 -CERCAVEVTRSIVRRYRMA 91
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
+ C CGK + K+ L H+R G++P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of
Myosin Function By Mutants G680a And G680v Of
Dictyostelium Myosin-2
Length = 758
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 3 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 55
Query: 85 SQKATLKT 92
S T KT
Sbjct: 56 SDSFTFKT 63
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 4 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 56
Query: 85 SQKATLKT 92
S T KT
Sbjct: 57 SDSFTFKT 64
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 4 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 56
Query: 85 SQKATLKT 92
S T KT
Sbjct: 57 SDSFTFKT 64
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase
Domain Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 15 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 67
Query: 85 SQKATLKT 92
S T KT
Sbjct: 68 SDSFTFKT 75
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of
Myosin Function By Mutants G680a And G680v Of
Dictyostelium Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of
Myosin Function By Mutants G680a And G680v Of
Dictyostelium Myosin-2
Length = 758
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 3 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 55
Query: 85 SQKATLKT 92
S T KT
Sbjct: 56 SDSFTFKT 63
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex
With Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 3 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 55
Query: 85 SQKATLKT 92
S T KT
Sbjct: 56 SDSFTFKT 63
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 3 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 55
Query: 85 SQKATLKT 92
S T KT
Sbjct: 56 SDSFTFKT 63
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 4 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 56
Query: 85 SQKATLKT 92
S T KT
Sbjct: 57 SDSFTFKT 64
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e
With Bound Mgadp-Befx
Length = 770
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 4 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 56
Query: 85 SQKATLKT 92
S T KT
Sbjct: 57 SDSFTFKT 64
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 4 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 56
Query: 85 SQKATLKT 92
S T KT
Sbjct: 57 SDSFTFKT 64
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain
Complexed With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A
Gtpase Domain, Determined As Myosin Fusion
Length = 776
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 15 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 67
Query: 85 SQKATLKT 92
S T KT
Sbjct: 68 SDSFTFKT 75
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 4 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 56
Query: 85 SQKATLKT 92
S T KT
Sbjct: 57 SDSFTFKT 64
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 4 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 56
Query: 85 SQKATLKT 92
S T KT
Sbjct: 57 SDSFTFKT 64
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
+ C CGK + K L++H+R G++P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 45 MFPCDVCGKKYKYKWGLSRHKRDECGQEP 73
++ C CGK ++ K L+ H+R G P
Sbjct: 10 VYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 4 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 56
Query: 85 SQKATLKT 92
S T KT
Sbjct: 57 SDSFTFKT 64
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 4 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 56
Query: 85 SQKATLKT 92
S T KT
Sbjct: 57 SDSFTFKT 64
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 4 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 56
Query: 85 SQKATLKT 92
S T KT
Sbjct: 57 SDSFTFKT 64
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 3 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 55
Query: 85 SQKATLKT 92
S T KT
Sbjct: 56 SDSFTFKT 63
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 4 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 56
Query: 85 SQKATLKT 92
S T KT
Sbjct: 57 SDSFTFKT 64
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 4 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 56
Query: 85 SQKATLKT 92
S T KT
Sbjct: 57 SDSFTFKT 64
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex
With Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex
With Adp- Metavanadate And Blebbistatin
Length = 788
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 15 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 67
Query: 85 SQKATLKT 92
S T KT
Sbjct: 68 SDSFTFKT 75
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
+ CD+C K ++ + L H+ ++P ++C +C Q TL H +
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKP-FKCQECGKGFCQSRTLAVHKTL 95
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex
With Adp- Metavanadate And Resveratrol
Length = 788
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 15 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 67
Query: 85 SQKATLKT 92
S T KT
Sbjct: 68 SDSFTFKT 75
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 4 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPDERDS------YECGEIVSET 56
Query: 85 SQKATLKT 92
S T KT
Sbjct: 57 SDSFTFKT 64
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor
Domain Complex
Length = 776
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 3 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPKERDS------YECGEIVSET 55
Query: 85 SQKATLKT 92
S T KT
Sbjct: 56 SDSFTFKT 63
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
+ C+ CGK Y K+ L H++ G+ P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIK 97
+ C+ CG + K L +H R P Y C C + K L HM K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKSK 52
>pdb|3FA2|A Chain A, Crystal Structure Of The Brca1 Associated Ring Domain
(Bard1) Tandem Brct Domains
pdb|3FA2|B Chain B, Crystal Structure Of The Brca1 Associated Ring Domain
(Bard1) Tandem Brct Domains
Length = 218
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 56 KYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
K++W + +R C QE KY+ P+ P R+
Sbjct: 73 KFEWVKACLRRKVCEQEEKYEIPEGPRRS 101
>pdb|2R1Z|A Chain A, Crystal Structure Of The Bard1 Brct Repeat
pdb|2R1Z|B Chain B, Crystal Structure Of The Bard1 Brct Repeat
Length = 209
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 56 KYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
K++W + +R C QE KY+ P+ P R+
Sbjct: 64 KFEWVKACLRRKVCEQEEKYEIPEGPRRS 92
>pdb|2NTE|A Chain A, Crystal Structure Of The Bard1 Brct Domains
pdb|2NTE|B Chain B, Crystal Structure Of The Bard1 Brct Domains
Length = 210
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 56 KYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
K++W + +R C QE KY+ P+ P R+
Sbjct: 65 KFEWVKACLRRKVCEQEEKYEIPEGPRRS 93
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA 84
+H SD+ + V+Q +S +F V K+Y + + +RD Y+C +
Sbjct: 4 IHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIW-YNPDPDERDS------YECGEIVSET 56
Query: 85 SQKATLKT 92
S T KT
Sbjct: 57 SDSFTFKT 64
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEP 73
C+ CGK ++ LS+H+R G++P
Sbjct: 13 CNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2ELM|A Chain A, Solution Structure Of The 10th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 37
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 75 YQCPQCPYRASQKATLKTHMAIKHS 99
Y C QC Y + K LK H+ KHS
Sbjct: 10 YYCSQCHYSSITKNCLKRHVIQKHS 34
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
F CD C K ++ + L+ H+ G++P
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
F C CGK + L+ H+R G++P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
F C+ CGK++ L H+R G++P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
F C CGK + +K L H++ G+ P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
F C+ CGK++ L H+R G++P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
+ C CGK +K K L H+R G++P
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.4 bits (54), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
+ C VC K + K L++H++ G++P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
F CD+CGK + + L+RH ++P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
+ C VCGK + + L +H++ G++P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|3G3E|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Hydroxyquinolin-2(1h)
pdb|3G3E|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Hydroxyquinolin-2(1h)
pdb|3G3E|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Hydroxyquinolin-2(1h)
pdb|3G3E|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Hydroxyquinolin-2(1h)
Length = 351
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 2 PRWER----FVSLAP---DLFPEYSFNW--PEVHLNESDFINWPTVRQYNSGM 45
P W+ F L P D+FP+Y + W + L +++ W T R G+
Sbjct: 105 PSWKDTVLGFRKLTPRELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGV 157
>pdb|2DU8|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2DU8|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2DU8|G Chain G, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2DU8|J Chain J, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2E48|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E48|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E48|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E48|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E49|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Imino- Serine
pdb|2E49|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Imino- Serine
pdb|2E49|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Imino- Serine
pdb|2E49|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Imino- Serine
pdb|2E4A|A Chain A, Crystal Structure Of Human D-amino Acid Oxidase In Complex
With O-aminobenzoate
pdb|2E4A|B Chain B, Crystal Structure Of Human D-amino Acid Oxidase In Complex
With O-aminobenzoate
pdb|2E4A|C Chain C, Crystal Structure Of Human D-amino Acid Oxidase In Complex
With O-aminobenzoate
pdb|2E4A|D Chain D, Crystal Structure Of Human D-amino Acid Oxidase In Complex
With O-aminobenzoate
pdb|2E82|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase Complexed
With Imino-Dopa
pdb|2E82|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase Complexed
With Imino-Dopa
pdb|2E82|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase Complexed
With Imino-Dopa
pdb|2E82|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase Complexed
With Imino-Dopa
pdb|3CUK|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase: Bound To
An Inhibitor
pdb|3CUK|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase: Bound To
An Inhibitor
pdb|3CUK|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase: Bound To
An Inhibitor
pdb|3CUK|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase: Bound To
An Inhibitor
Length = 347
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 2 PRWER----FVSLAP---DLFPEYSFNW--PEVHLNESDFINWPTVRQYNSGM 45
P W+ F L P D+FP+Y + W + L +++ W T R G+
Sbjct: 105 PSWKDTVLGFRKLTPRELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGV 157
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
+ C+ CGK + L+RH+R G +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
Length = 66
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPK-YQCPQCPYRASQKATLKTHMAIKH 98
+ C VC + Y + RH + K Y CP C ++K + H+ I H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.480
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,230,914
Number of Sequences: 62578
Number of extensions: 122561
Number of successful extensions: 468
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 177
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)