RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12010
(99 letters)
>gnl|CDD|222450 pfam13909, zf-H2C2_5, C2H2-type zinc-finger domain.
Length = 24
Score = 30.3 bits (69), Expect = 0.014
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 75 YQCPQCPYRASQKATLKTHMAIKH 98
Y+C CPY S L+ H+ + H
Sbjct: 1 YKCSHCPYS-STPKKLERHLKLHH 23
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 26.3 bits (58), Expect = 0.57
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 75 YQCPQCPYRASQKATLKTHMAI 96
Y+CP+C K+ L+ HM
Sbjct: 1 YRCPECGKVFKSKSALREHMRT 22
Score = 24.3 bits (53), Expect = 2.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 46 FPCDVCGKKYKYKWGLSRHKR 66
+ C CGK +K K L H R
Sbjct: 1 YRCPECGKVFKSKSALREHMR 21
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family
contains a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 26.1 bits (57), Expect = 0.61
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 75 YQCPQCPYRASQKATLKTHMAIKH 98
++CP C S K LK H+ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKHH 24
Score = 25.7 bits (56), Expect = 0.80
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 46 FPCDVCGKKYKYKWGLSRHKR 66
F C +CGK + K L RH R
Sbjct: 1 FKCPLCGKSFSSKDALKRHLR 21
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 25.8 bits (57), Expect = 0.90
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 61 LSRHKRDECGQEPKYQCPQCPYRASQ 86
L RH R G++P Y+CP C S
Sbjct: 2 LRRHMRTHTGEKP-YKCPVCGKSFSS 26
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 27.7 bits (63), Expect = 0.99
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 8/20 (40%)
Query: 47 PCDVC-GKKY-------KYK 58
PCDVC GK+Y KYK
Sbjct: 763 PCDVCKGKRYNRETLEVKYK 782
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 27.8 bits (61), Expect = 1.1
Identities = 28/104 (26%), Positives = 33/104 (31%), Gaps = 27/104 (25%)
Query: 19 SFNWPEVHLNESDFINWPTVRQYNSG--MFPCDV--CGKKYKYKWGLSRHKRDECGQEPK 74
S N H E I+ P+ + C V C KKYK + GL H Q K
Sbjct: 322 SSNGKLAHGGER-NIDTPSRMLKVKDGKPYKCPVEGCNKKYKNQNGLKYHML-HGHQNQK 379
Query: 75 -------------------YQCPQCPYRASQKATLKTHMAIKHS 99
Y+C C R LK H KHS
Sbjct: 380 LHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYH--RKHS 421
>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18. All proteins in this
family for which functions are known are involved in
nucleotide excision repair.This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 397
Score = 26.9 bits (59), Expect = 1.8
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 28 NESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDEC 69
N++D+ + P N G+ C +C ++ K + RH EC
Sbjct: 168 NDADYRSEPP----NEGLVQCPICQQRMPEK-AVERHLDSEC 204
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys.
The C2H2 zinc finger is composed of two short beta
strands followed by an alpha helix. The amino terminal
part of the helix binds the major groove in DNA binding
zinc fingers. The accepted consensus binding sequence
for Sp1 is usually defined by the asymmetric
hexanucleotide core GGGCGG but this sequence does not
include, among others, the GAG (=CTC) repeat that
constitutes a high-affinity site for Sp1 binding to the
wt1 promoter.
Length = 22
Score = 24.6 bits (54), Expect = 2.5
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 48 CDVCGKKYKYKWGLSRHKR 66
C CGK + K L RH R
Sbjct: 2 CPDCGKSFSRKSNLKRHLR 20
Score = 23.8 bits (52), Expect = 4.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 76 QCPQCPYRASQKATLKTHM 94
+CP C S+K+ LK H+
Sbjct: 1 KCPDCGKSFSRKSNLKRHL 19
>gnl|CDD|216996 pfam02364, Glucan_synthase, 1,3-beta-glucan synthase component.
This family consists of various 1,3-beta-glucan synthase
components including Gls1, Gls2 and Gls3 from yeast.
1,3-beta-glucan synthase EC:2.4.1.34 also known as
callose synthase catalyzes the formation of a
beta-1,3-glucan polymer that is a major component of the
fungal cell wall. The reaction catalyzed is:-
UDP-glucose + {(1,3)-beta-D-glucosyl}(N) <=> UDP +
{(1,3)-beta-D-glucosyl}(N+1).
Length = 818
Score = 26.6 bits (59), Expect = 2.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 10 LAPDLFPEYSFNWPEVHLNESDFINW 35
+AP LF + F W + ++ DFI W
Sbjct: 672 IAPFLFNPHQFAWNDFFVDYRDFIRW 697
>gnl|CDD|237881 PRK14985, PRK14985, maltodextrin phosphorylase; Provisional.
Length = 798
Score = 25.8 bits (57), Expect = 4.8
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 13 DLFPEYSFNWPEVHLN 28
DLFPEY WP N
Sbjct: 434 DLFPEYHQLWPNKFHN 449
>gnl|CDD|235871 PRK06835, PRK06835, DNA replication protein DnaC; Validated.
Length = 329
Score = 25.2 bits (56), Expect = 6.7
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 72 EPKYQCPQC 80
E KY CP+C
Sbjct: 96 EMKYTCPKC 104
>gnl|CDD|216429 pfam01314, AFOR_C, Aldehyde ferredoxin oxidoreductase, domains 2
& 3. Aldehyde ferredoxin oxidoreductase (AOR)
catalyzes the reversible oxidation of aldehydes to
their corresponding carboxylic acids with their
accompanying reduction of the redox protein ferredoxin.
This family is composed of two structural domains that
bind the tungsten cofactor via DXXGL(C/D) motifs. In
addition to maintaining specific binding interactions
with the cofactor, another role for domains 2 and 3 may
be to regulate substrate access to AOR.
Length = 382
Score = 25.3 bits (56), Expect = 7.5
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 20 FNWPEVHLNESDFINWPTVRQY----NSGMFPCDV-CGKKYKYK 58
N+ E ++ I+ + + G + C + CG+ K K
Sbjct: 42 RNFQEGTFEGAEKISGEALAEKYLVRRRGCYGCPIACGRLVKVK 85
>gnl|CDD|226684 COG4231, COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha
and beta subunits [Energy production and conversion].
Length = 640
Score = 25.0 bits (55), Expect = 7.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 77 CPQCPYRASQKATLK 91
CP CP+R S A K
Sbjct: 383 CPGCPHRPSFYALKK 397
>gnl|CDD|216792 pfam01927, DUF82, Protein of unknown function DUF82. This
prokaryotic protein family has no known function. The
protein contains four conserved cysteines that may be
involved in metal binding or disulphide bridges.
Length = 146
Score = 24.9 bits (55), Expect = 8.2
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKR 66
P V + + C CG+ Y W S +R
Sbjct: 114 PYVYERYDEFWRCPKCGRVY---WKGSHWRR 141
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.480
Gapped
Lambda K H
0.267 0.0692 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,745,315
Number of extensions: 355120
Number of successful extensions: 370
Number of sequences better than 10.0: 1
Number of HSP's gapped: 369
Number of HSP's successfully gapped: 36
Length of query: 99
Length of database: 10,937,602
Length adjustment: 65
Effective length of query: 34
Effective length of database: 8,054,592
Effective search space: 273856128
Effective search space used: 273856128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)