RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12010
(99 letters)
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 53.3 bits (129), Expect = 3e-11
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
C C K L H+R C P ++C C + Q + L HM
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKK 59
Score = 34.0 bits (79), Expect = 7e-04
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 75 YQCPQCPYRASQKATLKTHMAI 96
+C +C Y S KA L+ H I
Sbjct: 10 EKCSECSYSCSSKAALRIHERI 31
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 51.3 bits (123), Expect = 2e-10
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 46 FPCDVCGKKYKYKWGLSRHKR---DECGQEPKYQCPQCPYRASQKATLKTHMAIKHS 99
C++CG + K L+ H+R + + C C R + ++ H + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSHP 63
Score = 32.8 bits (75), Expect = 0.003
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 72 EPKYQCPQCPYRASQKATLKTHM 94
QC C + QKA+L H
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQ 27
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 46.0 bits (110), Expect = 2e-08
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPK-YQCPQCPYRASQKATLKTHMAIKH 98
+ C VC + Y + RH + K Y CP C ++K + H+ I H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 46.4 bits (111), Expect = 2e-08
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPK-YQCPQCPYRASQKATLKTHMAIKHS 99
+ C +C ++ + H + + + CP C ++K+ L H+ +HS
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 42.4 bits (99), Expect = 5e-07
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
C+ CG + K L +H R P Y C C + K L HM
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKS 51
Score = 27.4 bits (60), Expect = 0.22
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 74 KYQCPQCPYRASQKATLKTHM 94
KY C +C R + + LK H+
Sbjct: 1 KYICEECGIRXKKPSMLKKHI 21
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 39.7 bits (94), Expect = 9e-06
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
C+VCGK + K L H R G +P Y+C C Y A+ ++L H+ I
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRI 58
Score = 38.6 bits (91), Expect = 2e-05
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
C C L++H R + P ++C CPY + + L H+
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTVHLRS 86
Score = 24.3 bits (54), Expect = 5.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 75 YQCPQCPYRASQKATLKTHMAI 96
++C C S+K LKTHM
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRC 30
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 37.8 bits (89), Expect = 3e-05
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
CD C ++YK L+ HK G++P Y+C C + ++ A LKTH I
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRI 67
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 38.2 bits (90), Expect = 3e-05
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
C++CGK ++ + L+RHK G++P Y CP C R +K + H+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRS 57
Score = 37.5 bits (88), Expect = 7e-05
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPK-YQCPQCPYRASQKATLKTHMAIKHS 99
+ C VCG ++K K +S H R G K Y C C S+ L H+ HS
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 38.8 bits (89), Expect = 4e-05
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 19 SFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCP 78
+ L+ES ++ + F C +C + L +H R E CP
Sbjct: 49 TLIHNPQLLDESSYLYRLLASKA-ISQFVCPLCLMPFSSSVSLKQHIRYT---EHTKVCP 104
Query: 79 QCPYRASQKATLKTHMAIKHS 99
C + + H+ KH+
Sbjct: 105 VCKKEFTSTDSALDHVCKKHN 125
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 37.1 bits (87), Expect = 8e-05
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
F C +C + + L+ H R G++P + C C + ++ K H I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHRDI 53
Score = 31.3 bits (72), Expect = 0.013
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMA 95
F CD+CG+K+ RH+ + + S+ L+ +A
Sbjct: 32 FACDICGRKFARSDERKRHRDIQ--HILPILEDKVEELLSKNYHLENEVA 79
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 36.7 bits (86), Expect = 1e-04
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
F C +C + + L+ H R G++P + C C + ++ K H I
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHTKI 84
Score = 34.7 bits (81), Expect = 6e-04
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 46 FPCDV--CGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
+ C V C +++ L+RH R GQ+P +QC C S+ L TH+
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRT 56
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 35.7 bits (83), Expect = 2e-04
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 46 FPCDV--CGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
+ C V C +++ L+RH R GQ+P +QC C S+ L TH+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 69
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 36.0 bits (84), Expect = 2e-04
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 46 FPCDVCGKKYKYKWGLSRHKR---DECGQEPKYQCPQCPYRASQKATLKTHMAI 96
+ C C K ++ K L H + D + C +C +++ T+ H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
Score = 31.0 bits (71), Expect = 0.017
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC 80
F C CGK + + ++RH + G + +
Sbjct: 48 FVCSKCGKTFTRRNTMARHADNCAGPDG-VEGENS 81
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 35.9 bits (84), Expect = 2e-04
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
C +CGK +K LS H P Y C C R QK+ +K H I
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFI 51
Score = 35.5 bits (83), Expect = 3e-04
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
+PC CGK++ K + +H G++P ++C C SQ + L TH
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKCQVCGKAFSQSSNLITHSRK 79
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 36.3 bits (85), Expect = 2e-04
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDEC---GQEPKYQCPQCPYRASQKATLKTHMAI 96
F C CGK Y K L H+ C ++ + C C ++ L+ HM
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCSVCQETFRRRMELRLHMVS 88
Score = 36.3 bits (85), Expect = 3e-04
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
C C KK+ K+ L H R G++P ++CP+C +K L H
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHE 55
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 33.6 bits (78), Expect = 8e-04
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
F C+VC + + + L RH R ++P Y C C +++ L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHA 50
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 33.2 bits (77), Expect = 0.002
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTH 93
CD CGK + + LS+H+R G++P Y+C +C Q++ L H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGH 65
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 34.0 bits (77), Expect = 0.002
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS 99
H + E Y+C C ++ H+ +H
Sbjct: 7 HHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHP 43
Score = 28.2 bits (62), Expect = 0.21
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 3/61 (4%)
Query: 42 NSGMFPCDVCGKKYKYKWGLSRH---KRDECGQEPKYQCPQCPYRASQKATLKTHMAIKH 98
G + C C + + H + Y C +C + + L H H
Sbjct: 15 VEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH 74
Query: 99 S 99
Sbjct: 75 P 75
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 33.8 bits (78), Expect = 0.002
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 46 FPC--DVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
+ C + C ++ L+RH R G +P +QC C S+ L HM
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKP-FQCGVCNRSFSRSDHLALHM 95
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 33.3 bits (77), Expect = 0.002
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 46 FPCDV--CGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
+ CD CG K+ L+RH R G P +QC +C S+ L HM
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRP-FQCQKCDRAFSRSDHLALHM 85
Score = 27.1 bits (61), Expect = 0.41
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC--PQCPYRASQKATLKTHM 94
CGK Y L H R G++P Y C C ++ ++ L H
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHY 57
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 32.9 bits (76), Expect = 0.002
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 46 FPCDV--CGKKYKYKWGLSRHKRDE-CGQEPKYQCPQ--CPYRASQKATLKTHMAI 96
PCD CG+ + + L+ HK+ + Q+ + CP+ C + K LK HM +
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS-FSCPEPACGKSFNFKKHLKEHMKL 62
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 33.6 bits (78), Expect = 0.002
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 51 CGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
C +++ L RH+R G +P +QC C + S+ LKTH
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKP-FQCKTCQRKFSRSDHLKTHT 86
Score = 32.9 bits (76), Expect = 0.005
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC--PQCPYRASQKATLKTHM 94
F C C +K+ L H R G++P + C P C + ++ L H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKP-FSCRWPSCQKKFARSDELVRHH 116
Score = 29.8 bits (68), Expect = 0.060
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 51 CGKKYKYKWGLSRHKRDECGQEPKYQC--PQCPYRASQKATLKTHM 94
C K+Y L H R G++P YQC C R S+ LK H
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKP-YQCDFKDCERRFSRSDQLKRHQ 58
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 33.6 bits (78), Expect = 0.002
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
F C CG+ + + L H+R + P Y C C ++ L+ H I
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDHRYI 67
Score = 23.9 bits (53), Expect = 6.8
Identities = 7/30 (23%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK + L+ HK
Sbjct: 76 CQECGKGFCQSRTLAVHKTLHMQTSS-PTA 104
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 32.2 bits (73), Expect = 0.003
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC 80
C++CGK ++ + L+RHK G++P Y
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPS 46
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 33.8 bits (78), Expect = 0.003
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 8/57 (14%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPK--------YQCPQCPYRASQKATLKTHM 94
P C + + L H E P+ +CP+ K L H+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Score = 31.9 bits (73), Expect = 0.016
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC--PQCPYRASQKATLKTH 93
P + C GK +K K+ L H R G++P + C P C ++ LK H
Sbjct: 53 PEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP-FPCPFPGCGKIFARSENLKIH 111
Query: 94 M 94
Sbjct: 112 K 112
Score = 29.2 bits (66), Expect = 0.15
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 46 FPCDV--CGKKYKYKWGLSRHKRDECGQEPKYQC--PQCPYRASQKATLKTHM 94
FPC CGK + L HKR G++P ++C C R + + K HM
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKP-FKCEFEGCDRRFANSSDRKKHM 142
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 32.4 bits (75), Expect = 0.003
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTH 93
C CGK + L +H+R G++P Y+C +C SQ + L H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINH 61
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 33.0 bits (74), Expect = 0.005
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 42 NSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMA 95
N ++ C +C K H+R CP C R + H +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHER---LCRNAAVCPYCSLRFFSPELKQEHES 63
Score = 26.0 bits (56), Expect = 1.4
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 2/54 (3%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS 99
C C ++ H+ + K C +C ++ H H+
Sbjct: 43 AVCPYCSLRFFSPELKQEHESKC--EYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 33.2 bits (77), Expect = 0.005
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTH 93
C CGK + L H+R G++P Y+CP+C S++ L TH
Sbjct: 108 CPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTH 152
Score = 33.2 bits (77), Expect = 0.006
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
C CGK + + L H+R G++P Y CP+C SQ A L+ H
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLRAHQRT 127
Score = 32.8 bits (76), Expect = 0.008
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTH 93
C CGK + K L+RH+R G++P Y+CP+C SQ+A L+ H
Sbjct: 52 CPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAH 96
Score = 32.0 bits (74), Expect = 0.013
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTH 93
C CGK + L+ H+R G++P Y+CP+C S K L H
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRH 68
Score = 30.9 bits (71), Expect = 0.038
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTH 93
C CGK + + L H+R G++P Y+CP+C S++ L H
Sbjct: 136 CPECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALNVH 180
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 32.9 bits (76), Expect = 0.005
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCP--QCPYRASQKATLKTHMAI 96
C CGK + L RH+ G++P +QC C R S L+TH+ I
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFNLRTHVRI 86
Score = 29.4 bits (67), Expect = 0.083
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 46 FPCDV--CGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
C C K ++ + +H G + C +C + + LK H +
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRV-HVCAECGKAFVESSKLKRHQLV 56
Score = 29.0 bits (66), Expect = 0.12
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 51 CGKKYKYKWGLSRHKRDECGQEPKYQCP--QCPYRASQKATLKTHMAI 96
CGK++ + L H R G P Y CP C + +Q LK+H+
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRP-YVCPFDGCNKKFAQSTNLKSHILT 116
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 32.0 bits (74), Expect = 0.008
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
+PC CGK + +K RH G P Y C C + K L HM I
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKI 59
Score = 31.6 bits (73), Expect = 0.012
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
C VCGKK+K K L H + G +P Y+C C R + + H+
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKRFMWRDSFHRHV 85
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 31.4 bits (72), Expect = 0.009
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 51 CGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKH 98
C K++ L RH++ G + C + H+A H
Sbjct: 39 CDKRFSLPSRLKRHEKVHAGYPC-KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 28.4 bits (64), Expect = 0.17
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 45 MFPCDV--CGKKYKYKWGLSRHKRDECGQEPKYQCPQ--CPYRASQKATLKTHMAI 96
M+ C CGK +K L H+ Q P Y+CP C R S + LK H +
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRHEKV 55
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 29.4 bits (65), Expect = 0.023
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 75 YQCPQCPYRASQKATLKTHMAIKHS 99
YQC C +R++ + LKTH+ KHS
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHS 27
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 31.0 bits (69), Expect = 0.023
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 44 GMFPCDVCGK-KYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS 99
G C C K GL +H C QE + C C + A +K H+ H+
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHME-NCKQEM-FTCHHCGKQLRSLAGMKYHVMANHN 87
Score = 25.2 bits (54), Expect = 2.4
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 38 VRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEP 73
+ MF C CGK+ + G+ H P
Sbjct: 55 MENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.4 bits (65), Expect = 0.024
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 75 YQCPQCPYRASQKATLKTHMAIKHS 99
Y+CPQC Y ++ KA L H+ KH+
Sbjct: 10 YKCPQCSYASAIKANLNVHLR-KHT 33
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 31.0 bits (71), Expect = 0.025
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 9/57 (15%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDEC---GQEPKYQCPQCPYRA-----SQKATLKTHM 94
D C +++ + L H E ++ + C + L HM
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWGGCSRELRPFKAQYMLVVHM 59
Score = 29.1 bits (66), Expect = 0.15
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCP--QCPYRASQKATLKTHM 94
C + +K ++ L H R G++P ++C C S+ LKTH+
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKP-HKCTFEGCRKSYSRLENLKTHL 89
Score = 28.7 bits (65), Expect = 0.20
Identities = 16/58 (27%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 46 FPCDV--CGKKYKYKWGLSRHKRDECGQEPKYQCPQ--CPYRASQKATLKTHMAIKHS 99
C C K Y L H R G++P Y C C S + H HS
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAFSNASDRAKHQNRTHS 124
Score = 24.5 bits (54), Expect = 5.5
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 75 YQCPQCPYRASQKATLKTHMAIKH 98
+ C + L H+ +H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEH 27
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 29.0 bits (66), Expect = 0.044
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 75 YQCPQCPYRASQKATLKTHMAI 96
Y C C R TLK+H+ I
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRI 33
Score = 27.5 bits (62), Expect = 0.16
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 46 FPCDVCGKKYKYKWGLSRHKR 66
+PC++CG ++++ L H R
Sbjct: 12 YPCEICGTRFRHLQTLKSHLR 32
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 29.5 bits (65), Expect = 0.070
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 44 GMFPCDVCGK-KYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS 99
G C C K GL +H + +C C + KA L H +HS
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Score = 28.4 bits (62), Expect = 0.21
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 40 QYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPK 74
Q C C K++K K GL+ H E +P
Sbjct: 49 QKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS 83
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.2 bits (62), Expect = 0.074
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 48 CDVCGKKYKYKWGLSRHK 65
CD+CGKK+K K L HK
Sbjct: 12 CDMCGKKFKSKGTLKSHK 29
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.090
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
F CD+CGK + + L+RH ++P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP-SGP 43
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 29.5 bits (67), Expect = 0.13
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 51 CGKKYKYKWGLSRHKRDECGQEPKYQCPQ--CPYRASQKATLKTHMAI 96
CG Y W L H G++P + C + C + L H
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKP-FPCKEEGCEKGFTSLHHLTRHSLT 66
Score = 27.6 bits (62), Expect = 0.49
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 49 DVCGKKYKYKWGLSRHKRDECGQEPK--YQCPQCPYRASQKATLKTHMAIKH 98
+ C K++ L RH++ G K C H+A H
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFV---GKTWTLYLKHVAECH 188
Score = 25.2 bits (56), Expect = 3.1
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 51 CGKKYKYKWGLSRHKRDECGQEPK-YQC--PQCPYRASQKATLKTHMAI 96
C ++ K + +H + Y C C + LK H
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS 128
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 28.1 bits (62), Expect = 0.15
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 8/52 (15%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIK 97
C CG + + LSR K C +C + Q+A L +
Sbjct: 19 QKCSKCGIIFIRRSTLSRRK--------TPMCEKCRKDSCQEAALNKDEGNE 62
Score = 23.5 bits (50), Expect = 8.6
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEP 73
C+ C K + L++ + +E G++
Sbjct: 42 CEKCRKDSCQEAALNKDEGNESGKKT 67
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 29.0 bits (64), Expect = 0.15
Identities = 7/55 (12%), Positives = 13/55 (23%), Gaps = 5/55 (9%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPK-----YQCPQCPYRASQKATLKTHMA 95
+W R + + + +C C + L HM
Sbjct: 47 DDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 27.8 bits (61), Expect = 0.37
Identities = 7/38 (18%), Positives = 10/38 (26%), Gaps = 1/38 (2%)
Query: 61 LSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKH 98
+ G K++C C L HM
Sbjct: 7 GKLYGSIFTG-ASKFRCKDCSAAYDTLVELTVHMNETG 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.16
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
CDVC K ++Y L+ H+R G++P
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKP-SGP 43
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 27.4 bits (60), Expect = 0.17
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 46 FPCDVCGKKYKYKWGLSRHKR 66
+ CD+CGK+YK + GLS H
Sbjct: 8 YACDICGKRYKNRPGLSYHYA 28
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 27.1 bits (59), Expect = 0.21
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 75 YQCPQCPYRASQKATLKTHMAIKHS 99
Y C QC Y + K LK H+ KHS
Sbjct: 10 YYCSQCHYSSITKNCLKRHVIQKHS 34
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.23
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
CDVCGK++ L H+R G++P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP-SGP 43
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 26.7 bits (60), Expect = 0.25
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 64 HKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
G++P Y+C C R Q A L+ H+ I
Sbjct: 2 SSGSSGGEKP-YKCETCGARFVQVAHLRAHVLI 33
Score = 22.5 bits (49), Expect = 9.7
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 48 CDVCGKKYKYKWGLSRHKR 66
C+ CG ++ L H
Sbjct: 14 CETCGARFVQVAHLRAHVL 32
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 26.8 bits (60), Expect = 0.31
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ 79
C CGK +++ L +H+R G++P
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKP-SGPSS 45
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.34
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
CDVC K + + L++H+R G++P
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKP-SGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.38
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C VCGK ++ L +H G+ P
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERP-SGP 43
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 26.8 bits (60), Expect = 0.39
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 46 FPCDVCGKKYKYKWGLSRH-KRDECGQEPKYQCPQC 80
+ C CGK + L+ H K+ + P ++C
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQVW 47
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 28.2 bits (63), Expect = 0.39
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC 80
C CGK Y + S+ K C C
Sbjct: 139 CIGCGKVYPPQVFKSKLAEHPIKDFVK--CDVC 169
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.40
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
+ C+ CGK + L H + ++
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKS-SGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.40
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+VCGK + L++H R +
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETL-SGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.45
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ 79
CD CGK + L RH+R G++P
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKP-SGPSS 45
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.47
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK Y K+ L H++ G+ P
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERP-SGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.51
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK Y + L H+R G++
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKT-SGP 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.54
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK + L+ H+ G++P
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKP-SGP 43
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 27.7 bits (61), Expect = 0.60
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC 80
C CGK Y + S+ K C C
Sbjct: 147 CIGCGKVYPPQVFKSKLAEHPIKDFVK--CDVC 177
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.0 bits (58), Expect = 0.63
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK +K K L H+R G++P
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKP-SGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.64
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C VCGK + ++ LS H+R G++P
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKP-SGP 43
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 26.6 bits (59), Expect = 0.67
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 45 MFPCDV--CGKKYKYKWGLSRHKRDECGQEPKYQC--PQCPYRASQKATLKTHM 94
C CGK Y L H R G++P + C C R ++ L H
Sbjct: 17 SHICSHPGCGKTYFKSSHLKAHTRTHTGEKP-FSCSWKGCERRFARSDELSRHR 69
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.70
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK ++ L+ H+ G++P
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKP-SGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.71
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK +++ LSRH+R G++P
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKP-SGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.75
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK + +K L H+R +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKH-SGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.76
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK + K LS H+R G++P
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKP-SGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 25.6 bits (57), Expect = 0.78
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
F C CGK ++ K L H+R G++
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKS-GPS 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.79
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK + + L H+R G++P
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKP-SGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 0.80
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK + L+ H R G++P
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKP-SGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.87
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK + ++H+R GQ P
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRP-SGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.88
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
F C+ CGK + + L+ H R ++
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKS-SGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 25.6 bits (57), Expect = 0.90
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK + + L H G++P
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKP-SGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.91
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK + L+RH+R G++P
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKP-SGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 0.92
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C VCGK + + L +H++ G++P
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKP-SGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.92
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK + L+RH+R G +P
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKP-SGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.93
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK + + L++H ++P
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKP-SGP 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 25.6 bits (57), Expect = 0.94
Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ 79
C C + L H+ G++P
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKP-SGPSS 45
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.96
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C VC K + K L++H++ G++P
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKP-SGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.00
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK + +K L H++ G+
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERH-SGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 1.00
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ C K + L+ H+R G++P
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKP-SGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.0
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
F C CGK + GL++H+R G++P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP-SGP 43
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 27.1 bits (61), Expect = 1.0
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 8/20 (40%)
Query: 47 PCDVC-GKKY-------KYK 58
PC+VC GK+Y YK
Sbjct: 476 PCEVCHGKRYNRETLEVTYK 495
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.1
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
F C CGK Y + L++H+R G++P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP-SGP 43
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.1
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ 79
F C CG + + L +H R +P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDP-SGPSS 45
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.1
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK + L+RH+R G++P
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKP-SGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.2
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK ++ + L+ H+ G++P
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKP-SGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.2
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK + K L++H+R G++P
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKP-SGP 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.2
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK + L+ H+R G +P
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKP-SGP 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.2 bits (56), Expect = 1.2
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
F C C K + K L H++ ++P
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKP-SGP 41
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.3
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK + K L+RH+R G++P
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKP-SGP 43
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics,
ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 56
Score = 25.4 bits (55), Expect = 1.3
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 69 CGQEPKYQCPQC 80
C ++PKY+CP C
Sbjct: 18 CLEKPKYRCPAC 29
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.1 bits (56), Expect = 1.3
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ 79
C CGK + L+ H+R G P
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRP-SGPSS 45
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 25.2 bits (56), Expect = 1.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 48 CDVCGKKYKYKWGLSRHKR 66
CD CGK + Y L H+R
Sbjct: 15 CDECGKNFCYISALRIHQR 33
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.4
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ 79
F C+ CGK++ L H+R G++P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP-SGPSS 45
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 26.7 bits (60), Expect = 1.4
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 8/20 (40%)
Query: 47 PCDVC-GKKY-------KYK 58
PC+VC GK+Y YK
Sbjct: 778 PCEVCHGKRYNRETLEVTYK 797
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 25.2 bits (56), Expect = 1.4
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK + LS+H++ G++P
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKP-SGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.4
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK + L+RH+ G++P
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP-SGP 43
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 24.6 bits (54), Expect = 1.4
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 64 HKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
R G +P +QCP C S+ L H
Sbjct: 2 STRGSTGIKP-FQCPDCDRSFSRSDHLALHR 31
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.4
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK + L+RH+ G++P
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP-SGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.5
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
F C CGK ++ L+ H R G++P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP-SGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.5
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK + + L+ H+ G++P
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKP-SGP 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.8 bits (55), Expect = 1.5
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
F C+ CGK + H+R G++P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKP-SGP 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.6
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ 79
C C K + L++HKR G+
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERS-SGPSS 45
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.6
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
F C CGK + +K L H++ G+ P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP-SGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.6
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK + K+ L H+R G++P
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKP-SGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.7 bits (55), Expect = 1.6
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK + L RH+ G++P
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKP-SGP 43
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 1.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 75 YQCPQCPYRASQKATLKTHM 94
++C C Y K+ LK HM
Sbjct: 10 FKCSLCEYATRSKSNLKAHM 29
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 26.3 bits (59), Expect = 1.7
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 8/20 (40%)
Query: 47 PCDVC-GKKY-------KYK 58
PC+VC G +Y YK
Sbjct: 796 PCEVCQGARYNRETLEVHYK 815
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.7 bits (55), Expect = 1.8
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK ++ L+RH+ G++P
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKP-SGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 24.8 bits (55), Expect = 1.8
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 48 CDVCGKKYKYKWGLSRHKR 66
C CG+ + K L++H+R
Sbjct: 15 CHECGRGFTLKSHLNQHQR 33
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.7 bits (55), Expect = 1.8
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ C K + K L H+R G+
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESG-PSS 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.9
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK + L +H+R G++P
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKP-SGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.0
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
F C C K + K L H+R G++P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP-SGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 24.4 bits (54), Expect = 2.1
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ 79
C C K + K L H+R ++P
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKP-SGPSS 45
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 26.3 bits (59), Expect = 2.1
Identities = 9/20 (45%), Positives = 10/20 (50%), Gaps = 8/20 (40%)
Query: 47 PCDVC-GKKY-------KYK 58
CDVC GK+Y YK
Sbjct: 738 ECDVCKGKRYNRETLEITYK 757
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.2
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
F C+ CGK++ L H+R G++P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP-SGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.2
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK + L +H+R G++P
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKP-SGP 43
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.4 bits (52), Expect = 2.2
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 45 MFPCDVCGKKYKYKWGLSRHKRDECGQE 72
+F C+ C K +K+K L H R ++
Sbjct: 9 IFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.3
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ 79
F C CGK + K LS H++ G++P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP-SGPSS 45
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.4
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK + K LS H+R G++P
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKP-SGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.4
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK + K L H R G++P
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKP-SGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.4 bits (54), Expect = 2.4
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK ++ K L H R G+
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESG-PSS 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.4
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK YK + L H+R G++
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKL-SGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.5
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK + + L +H++ Q+P
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTKQKP-SGP 43
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 24.4 bits (52), Expect = 2.6
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 67 DECGQEPKYQCPQCPYRASQKATLKTHMAIKHS 99
+ C +C R S++A+LK H HS
Sbjct: 3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHS 35
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 25.9 bits (56), Expect = 2.6
Identities = 6/55 (10%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 45 MFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS 99
++ + K+ + H+ G E + Q + L+ + +
Sbjct: 180 VWYSEDYMKRLHSMSQETIHRNLARG-EKRLQREKSEQVLDNPEDLRGPIHLSVL 233
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 24.5 bits (52), Expect = 2.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECG 70
+ C VCG ++K K +S H R G
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSHDG 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 2.8
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK + K GL H++ G+
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERH-SGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 3.0
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C +CGK + K L H++ G++P
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKP-SGP 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 24.0 bits (53), Expect = 3.0
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK + L +H+R G++P
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKP-SGP 43
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 24.0 bits (52), Expect = 3.1
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
F C C + + + L +H+R +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 23.3 bits (50), Expect = 5.9
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
G+ P ++C +C +Q+ L H
Sbjct: 2 SSGSSGAGENP-FKCSKCDRVFTQRNYLVQHERT 34
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 25.6 bits (55), Expect = 3.1
Identities = 5/30 (16%), Positives = 7/30 (23%)
Query: 37 TVRQYNSGMFPCDVCGKKYKYKWGLSRHKR 66
+ + C VC L H
Sbjct: 172 PPTASSGHGYQCHVCSAVLFSPLDLDAHVA 201
Score = 24.8 bits (53), Expect = 6.2
Identities = 7/29 (24%), Positives = 8/29 (27%)
Query: 70 GQEPKYQCPQCPYRASQKATLKTHMAIKH 98
YQC C L H+A
Sbjct: 176 SSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 3.2
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK + + L H+R G+ P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENP-SGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 24.1 bits (53), Expect = 3.4
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEP 73
CD CGK + K L H R G P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGP 39
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 24.0 bits (53), Expect = 3.6
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
F C CGK + + L+ H + G++P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKP-SGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 23.6 bits (52), Expect = 3.8
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C+ CGK + +K L H+R G
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGVSG-PSS 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 23.6 bits (52), Expect = 4.0
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
+ C C K + K L H+R G +P
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKP-SGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 4.1
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK + + L H++ G++P
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKP-SGP 43
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 25.2 bits (56), Expect = 4.2
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 8/20 (40%)
Query: 47 PCDVC-GKKY-------KYK 58
PC VC G +Y +Y+
Sbjct: 663 PCPVCHGTRYNAETLEVEYR 682
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 23.6 bits (52), Expect = 4.5
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK + K L H+R G+
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESG-PSS 41
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.7 bits (52), Expect = 4.6
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK + K L H+R G+ P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENP-SGP 43
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 23.2 bits (49), Expect = 4.8
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECG 70
+ C VCGK++ K + H R G
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 25.2 bits (54), Expect = 5.0
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 74 KYQCPQCPYRASQKATLKTHMAIKHS 99
Y C C R S + L H+ H
Sbjct: 116 SYVCNVCNARFSTMSALSEHLRSDHR 141
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO
zinc finger, beta-BETA- alpha fold, coiled coil,
cytoplasm, disease mutation; NMR {Synthetic} PDB:
2jvy_A
Length = 28
Score = 23.2 bits (49), Expect = 5.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 75 YQCPQCPYRASQKATLKTHM 94
+ CP+C Y+A TL+ H+
Sbjct: 4 FCCPKCQYQAPDMDTLQIHV 23
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 23.3 bits (51), Expect = 5.3
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK + +H+R G++P
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKP-SGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 23.2 bits (51), Expect = 6.0
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
F C CGK + L+ H+R G++P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP-SGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.8 bits (50), Expect = 7.6
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK + K L H+R G++P
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKP-SGP 43
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 23.8 bits (51), Expect = 7.9
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 8/57 (14%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDE---CGQEPKYQC--PQCPYRA---SQKATLKTHM 94
P C + + L H E ++ + C +CP K L H+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 22.8 bits (50), Expect = 8.0
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
C CGK + K L H++ GQ
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSG-PSS 43
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 22.9 bits (50), Expect = 8.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEP 73
C CGK ++ K L+ H+R G P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGP 38
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 22.6 bits (49), Expect = 9.3
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEP 73
+ C CGK + + L+ H+R P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.480
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,500,364
Number of extensions: 71202
Number of successful extensions: 523
Number of sequences better than 10.0: 1
Number of HSP's gapped: 477
Number of HSP's successfully gapped: 233
Length of query: 99
Length of database: 6,701,793
Length adjustment: 65
Effective length of query: 34
Effective length of database: 4,886,928
Effective search space: 166155552
Effective search space used: 166155552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)