RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12010
(99 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 37.4 bits (86), Expect = 1e-05
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
+PC CGK + +K RH Y C C + K L HM I
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGHMKI 52
Score = 25.4 bits (55), Expect = 0.43
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 40 QYNSGMFPCDVCGKKYKYKWGLSRHKR 66
+ C VCGKK+K K L H +
Sbjct: 25 HLGLRPYGCGVCGKKFKMKHHLVGHMK 51
Score = 22.3 bits (47), Expect = 6.3
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 72 EPKYQCPQCPYRASQKATLKTHMAIKH 98
+ Y C QC + K+ HM++
Sbjct: 1 DKLYPC-QCGKSFTHKSQRDRHMSMHL 26
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 33.8 bits (78), Expect = 2e-04
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 75 YQCPQCPYRASQKATLKTHMAIKHS 99
Y+C C R +Q T+K H+ KH+
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHT 33
Score = 26.1 bits (58), Expect = 0.18
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 46 FPCDVCGKKYKYKWGLSRHKR 66
+ C +C ++ + H
Sbjct: 9 YECYICHARFTQSGTMKMHIL 29
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 31.3 bits (70), Expect = 0.002
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 75 YQCPQCPYRASQKATLKTHMAIKHS 99
YQC C +R++ + LKTH+ KHS
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHS 27
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 30.9 bits (70), Expect = 0.002
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
R + + + Y+C +C S + L H
Sbjct: 2 RSEWQQRERRR-YKCDECGKSFSHSSDLSKHRRT 34
Score = 23.2 bits (50), Expect = 1.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 46 FPCDVCGKKYKYKWGLSRHKR 66
+ CD CGK + + LS+H+R
Sbjct: 13 YKCDECGKSFSHSSDLSKHRR 33
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 31.1 bits (71), Expect = 0.002
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 75 YQCPQCPYRASQKATLKTHMAIKHS 99
Y C C S+ L H+ H+
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHT 30
Score = 27.7 bits (62), Expect = 0.042
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
+ C CGK + L+ H + E ++C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 30.8 bits (70), Expect = 0.003
Identities = 9/27 (33%), Positives = 9/27 (33%)
Query: 72 EPKYQCPQCPYRASQKATLKTHMAIKH 98
E Y C C QK L H H
Sbjct: 6 EKPYACSHCDKTFRQKQLLDMHFKRYH 32
Score = 26.9 bits (60), Expect = 0.083
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 46 FPCDVCGKKYKYKWGLSRHKR 66
+ C C K ++ K L H +
Sbjct: 9 YACSHCDKTFRQKQLLDMHFK 29
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 30.3 bits (69), Expect = 0.004
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 75 YQCPQCPYRASQKATLKTHMAI 96
Y C +C S+ + L H +
Sbjct: 8 YGCVECGKAFSRSSILVQHQRV 29
Score = 28.7 bits (65), Expect = 0.017
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 46 FPCDVCGKKYKYKWGLSRHKR 66
+ C CGK + L +H+R
Sbjct: 8 YGCVECGKAFSRSSILVQHQR 28
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 29.6 bits (67), Expect = 0.006
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 75 YQCPQCPYRASQKATLKTHMAI 96
+ CP+CP R + L H+
Sbjct: 3 FACPECPKRFMRSDHLSKHIKT 24
Score = 27.3 bits (61), Expect = 0.044
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 46 FPCDVCGKKYKYKWGLSRHKR 66
F C C K++ LS+H +
Sbjct: 3 FACPECPKRFMRSDHLSKHIK 23
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 29.3 bits (66), Expect = 0.011
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 64 HKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
R G +P +QCP C S+ L H
Sbjct: 2 STRGSTGIKP-FQCPDCDRSFSRSDHLALHRKR 33
Score = 24.7 bits (54), Expect = 0.56
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 46 FPCDVCGKKYKYKWGLSRHKR 66
F C C + + L+ H++
Sbjct: 12 FQCPDCDRSFSRSDHLALHRK 32
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 29.1 bits (66), Expect = 0.011
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 75 YQCPQCPYRASQKATLKTHMAI 96
+ C C +++ LK H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS 24
Score = 28.7 bits (65), Expect = 0.016
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 46 FPCDVCGKKYKYKWGLSRHKR 66
F C+VC + + + L RH R
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR 23
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 28.3 bits (64), Expect = 0.018
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 75 YQCPQCPYRASQKATLKTHMAI 96
+QC C S+ L TH+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRT 25
Score = 26.8 bits (60), Expect = 0.076
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 46 FPCDVCGKKYKYKWGLSRHKR 66
F C +C + + L+ H R
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR 24
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 27.3 bits (60), Expect = 0.050
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 74 KYQCPQCPYRASQKATLKTHMAIKHS 99
K+ CP C ++K+ L H+ +HS
Sbjct: 2 KFHCPHCDTVIARKSDLGVHLRKQHS 27
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 27.3 bits (60), Expect = 0.054
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEP 73
C++CGK ++ + L+RHK G++P
Sbjct: 8 CEICGKIFRDVYHLNRHKLSHSGEKP 33
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 27.0 bits (60), Expect = 0.074
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 72 EPKYQCPQCPYRASQKATLKTHMAI 96
+ + C C + KA H+ +
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKV 29
Score = 26.6 bits (59), Expect = 0.11
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 46 FPCDVCGKKYKYKWGLSRHKR 66
F C +C + K +RH +
Sbjct: 8 FVCRICLSAFTTKANCARHLK 28
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.6 bits (59), Expect = 0.12
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 47 PCDVCGKKYKYKWGLSRHKRDECGQEPKYQC 77
P CGK + +K L H + Y C
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSDTRD-YIC 34
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 24.9 bits (55), Expect = 0.40
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 46 FPCDVCGKKYKYKWGLSRHKR 66
+ C CGK + GL H+R
Sbjct: 3 YKCLECGKAFSQNSGLINHQR 23
Score = 21.8 bits (47), Expect = 6.3
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 75 YQCPQCPYRASQKATLKTHMAI 96
Y+C +C SQ + L H I
Sbjct: 3 YKCLECGKAFSQNSGLINHQRI 24
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 23.8 bits (52), Expect = 0.95
Identities = 5/24 (20%), Positives = 9/24 (37%), Gaps = 2/24 (8%)
Query: 75 YQC--PQCPYRASQKATLKTHMAI 96
+ C C R ++ L+ H
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRT 26
Score = 23.8 bits (52), Expect = 1.1
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 46 FPCDV--CGKKYKYKWGLSRHKR 66
F C CGK++ L RHKR
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKR 25
>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.5 bits (50), Expect = 1.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 76 QCPQCPYRASQKATLKTHMAI 96
+C +C Y S KA L+ H I
Sbjct: 4 KCSECSYSCSSKAALRIHERI 24
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 23.4 bits (51), Expect = 1.7
Identities = 7/23 (30%), Positives = 7/23 (30%), Gaps = 2/23 (8%)
Query: 46 FPCDV--CGKKYKYKWGLSRHKR 66
C C K Y L H R
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHLR 25
Score = 22.3 bits (48), Expect = 4.1
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 75 YQCPQ--CPYRASQKATLKTHMAI 96
++C C S+ LKTH+
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHLRS 26
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 23.8 bits (51), Expect = 1.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 43 SGMFPCDVCGKKYKYKWGLSRHK 65
+G+ PC +CGK + L +H+
Sbjct: 4 AGILPCGLCGKVFTDANRLRQHE 26
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 22.9 bits (49), Expect = 2.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 46 FPCDVCGKKYKYKWGLSRHKR 66
F CD+CG+K+ RH +
Sbjct: 4 FACDICGRKFARSDERKRHTK 24
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.4 bits (47), Expect = 4.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 75 YQCPQCPYRASQKATLKTHMAI 96
Y+C C Y A+ ++L H+ I
Sbjct: 4 YKCKTCDYAAADSSSLNKHLRI 25
>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 72
Score = 22.9 bits (49), Expect = 4.8
Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYR 83
C C + + S+ +R + + C C +
Sbjct: 24 RECPKCHSRENVFFQ-SQQRRKDTSMVLFFVCLSCSHI 60
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 23.2 bits (49), Expect = 5.0
Identities = 6/50 (12%), Positives = 15/50 (30%)
Query: 45 MFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
F K + + + + QC +C ++ + T +
Sbjct: 26 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 75
>d1ugpb_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase
{Pseudonocardia thermophila [TaxId: 1848]}
Length = 226
Score = 23.7 bits (51), Expect = 5.1
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 25 VHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKW 59
+ F+ R M P + Y + W
Sbjct: 38 PATFRAGFMGLDEFRFGIEQMNPAEYLESPYYWHW 72
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 21.9 bits (46), Expect = 6.0
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 72 EPKYQCPQCPYRASQKATLKTHM 94
E ++C CPY + + L H+
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHL 23
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 21.6 bits (45), Expect = 6.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 46 FPCDVCGKKYKYKWGLSRHKR 66
+ C +C + + K LSRH+R
Sbjct: 1 YKCGLCERSFVEKSALSRHQR 21
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 21.1 bits (45), Expect = 9.4
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 46 FPCDV--CGKKYKYKWGLSRHKR 66
+ C V C +++ L+RH R
Sbjct: 3 YACPVESCDRRFSRSADLTRHIR 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.480
Gapped
Lambda K H
0.267 0.0586 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 398,882
Number of extensions: 16581
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 72
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)