BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12011
         (94 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
          Northeast Structural Genomics Consortium
          Length = 74

 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAI 82
          + CD C   ++YK NL SHK    G++P ++C  C  +  R  NLK+H  I
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRI 67


>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
          In Zinc Finger Protein 278
          Length = 95

 Score = 34.7 bits (78), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHL 80
           AC++C K ++   +L  HK    G++P + CP C  R KRK  +  H+
Sbjct: 8  VACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHV 55


>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
          Triplets
 pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
          Triplets
          Length = 190

 Score = 33.9 bits (76), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSH 79
          + C  C K +  K++L  H++   G++P ++CP+C     ++ NL++H
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAH 96



 Score = 32.3 bits (72), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 16  ESFLTWSNLKPNLNGM-----FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRT 70
           +SF   +NL+ +         +AC  C K +    +L +H++   G++P ++CP+C    
Sbjct: 85  KSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSF 143

Query: 71  KRKGNLKSH 79
            R+ NL +H
Sbjct: 144 SREDNLHTH 152



 Score = 31.6 bits (70), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 32  FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSH 79
           + C  C K +  + NL++H++   G++P ++CP+C     R+  L  H
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALNVH 180



 Score = 30.0 bits (66), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 32  FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSH 79
           + C  C K +  + NL +H++   G++P + CP+C     +  +L++H
Sbjct: 78  YKCPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLRAH 124



 Score = 29.6 bits (65), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 17 SFLTWSNLKPNLNGMFACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNL 76
          S +  + L+P     +AC  C K +    +L  H++   G++P ++CP+C      K +L
Sbjct: 8  SSVAQAALEPGEK-PYACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDL 65

Query: 77 KSH 79
            H
Sbjct: 66 TRH 68


>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
          (Tatazf;clone #6)
 pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
          (Tatazf;clone #6)
          Length = 90

 Score = 32.0 bits (71), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 32 FACDL--CDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHL 80
          +AC +  CD+ +  K NL +H +   GQ+P FQC  C     ++ +L +H+
Sbjct: 5  YACPVESCDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFSQQASLNAHI 54


>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
           Repeats Of Murine Gli-Kruppel Family Member Hkr3
          Length = 124

 Score = 31.2 bits (69), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 31  MFACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAIRH 84
           +F C +C + ++ +  L  H     G+ P ++C  CS +  +K +L+SH+   H
Sbjct: 66  VFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLH 118



 Score = 29.3 bits (64), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 34 CDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLA 81
          C  C K++  K  L  H +   G++P F+CP+C     RK NL  H A
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHEA 56



 Score = 27.7 bits (60), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 18 FLTWSNLKPNLNGMFACDLCDKEYKYKRNLYSHKKDEC--GQEPRFQCPQCSYRTKRKGN 75
          +L   N K      F C  C K Y  K NL  H+   C    E  F C  C    +R+  
Sbjct: 22 YLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRME 81

Query: 76 LKSHLA 81
          L+ H+ 
Sbjct: 82 LRLHMV 87


>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
          Length = 60

 Score = 30.4 bits (67), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAI 82
          F C+ C K Y+    L  H++   G  PR  CP+C    + +  +  HL +
Sbjct: 5  FFCNFCGKTYRDASGLSRHRRAHLGYRPR-SCPECGKCFRDQSEVNRHLKV 54


>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          311- 343) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 30.0 bits (66), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEP 59
          F CD CDK ++ +  L SH+    G++P
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTGEKP 40


>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
          Site)
 pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
          Site)
          Length = 90

 Score = 29.3 bits (64), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 32 FACDL--CDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHL 80
          +AC +  CD+ +    NL  H +   GQ+P FQC  C     R  +L +H+
Sbjct: 5  YACPVESCDRRFSDSSNLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54


>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
          Domains Of Human Zinc Finger Protein 297b
          Length = 110

 Score = 29.3 bits (64), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYR 69
          + C +C K++K K +L  H K   G +P ++C  C+ R
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKR 74


>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
 pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
          Length = 88

 Score = 29.3 bits (64), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAIRH 84
          F C +C + +    +L +H +   G++P F C  C  +  R    K H  I+H
Sbjct: 4  FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHRDIQH 55


>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
          (CLONE #2)
 pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
          (CLONE #2)
          Length = 90

 Score = 29.3 bits (64), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 32 FACDL--CDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHL 80
          +AC +  CD+ +  K NL +H +   GQ+P FQC  C     +   L  H+
Sbjct: 5  YACPVESCDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFSQHTGLNQHI 54


>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
          Zinc-Binding Domain Of The Zinc Finger Protein 64,
          Isoforms 1 And 2
          Length = 96

 Score = 28.9 bits (63), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 29 NGMFACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAI 82
          +G   C++C K +  K  L +H +   G +P ++C  C Y      +L  HL I
Sbjct: 6  SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRI 58


>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
          Bound To Dna
 pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
          Bound To Dna
 pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
          Bound To Dna
          Length = 87

 Score = 28.9 bits (63), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 28 LNGMFACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSH 79
          +   + C  C K +    NL  H++   G++P ++CP+C     +  +L+ H
Sbjct: 1  MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKP-YKCPECGKSFSQSSDLQKH 51



 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 6/69 (8%)

Query: 16 ESFLTWSNLKPNLNGM-----FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRT 70
          +SF   SNL+ +         + C  C K +    +L  H++   G++P ++CP+C    
Sbjct: 12 KSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP-YKCPECGKSF 70

Query: 71 KRKGNLKSH 79
           R  +L  H
Sbjct: 71 SRSDHLSRH 79


>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
          Protein Zfy: 2d Nmr Structure Of An Even Finger And
          Implications For "jumping-Linker" Dna Recognition
          Length = 30

 Score = 28.5 bits (62), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 61 FQCPQCSYRTKRKGNLKSHLAIRH 84
          +QC  C YR+    NLK+H+  +H
Sbjct: 3  YQCQYCEYRSADSSNLKTHIKTKH 26


>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
          Zinc Finger Protein 406
          Length = 36

 Score = 28.5 bits (62), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 61 FQCPQCSYRTKRKGNLKSHL 80
          ++CPQCSY +  K NL  HL
Sbjct: 10 YKCPQCSYASAIKANLNVHL 29


>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
          Domain Of Zinc Finger Protein 435
          Length = 77

 Score = 28.5 bits (62), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAI 82
          + CD C K + +  +L  H++   G++P ++C +C     ++ +L  H  +
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGHHRV 68


>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
          Site)
 pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
          Site)
 pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
          Site)
          Length = 90

 Score = 28.1 bits (61), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 32 FACDL--CDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHL 80
          +AC +  CD+ +    +L  H +   GQ+P FQC  C     R  +L +H+
Sbjct: 5  YACPVESCDRRFSRSADLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54


>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          463- 495) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEP 59
          F C  C K + +K NL  H+K   G+ P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40


>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          528- 560) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEP 59
          + CD+C K ++Y  +L  H++   G++P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40


>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
          Site)
          Length = 90

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 32 FACDL--CDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHL 80
          +AC +  CD+ +    +L  H +   GQ+P FQC  C     R  +L +H+
Sbjct: 5  YACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54


>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          199- 231) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEP 59
          + CD+C KE+    +L +H++   G++P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40


>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
 pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
          Form
 pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
          Length = 57

 Score = 26.9 bits (58), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 34 CDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAIRHE 85
          C  C K ++    L  H +   G++P ++C  C Y   +K +L+ HL   H+
Sbjct: 7  CSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFCEYAAAQKTSLRYHLERHHK 57


>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          607- 639) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 26.9 bits (58), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEP 59
          F C  C K +  K NL  H++   G++P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP 40


>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
          Length = 30

 Score = 26.9 bits (58), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 61 FQCPQCSYRTKRKGNLKSHLAIRH 84
          +QC  C +R+    NLK+H+  +H
Sbjct: 3  YQCQYCEFRSADSSNLKTHIKTKH 26


>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
          Zinc Finger Protein 406
          Length = 36

 Score = 26.6 bits (57), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 61 FQCPQCSYRTKRKGNLKSHL 80
          F+C  C Y T+ K NLK+H+
Sbjct: 10 FKCSLCEYATRSKSNLKAHM 29


>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          491- 523) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 26.2 bits (56), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEP 59
          + C +C K +  + NL  H+K   G++P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40


>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
          Zinc Finger Protein 406
          Length = 36

 Score = 25.8 bits (55), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 34 CDLCDKEYKYKRNLYSHK 51
          CD+C K++K K  L SHK
Sbjct: 12 CDMCGKKFKSKGTLKSHK 29


>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
          Length = 82

 Score = 25.8 bits (55), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAI 82
          F C +C K +K    L +H        P + C  C  R  +K ++K H  I
Sbjct: 2  FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFI 51


>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide
          Reveals An Extension To The Rules For Zinc-FingerDNA
          RECOGNITION
 pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide
          Reveals An Extension To The Rules For Zinc-FingerDNA
          RECOGNITION
          Length = 66

 Score = 25.8 bits (55), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 9/59 (15%)

Query: 32 FACDLCDKEYKYKRN-----LYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAIRHE 85
          + C +C + Y +  N     + SHK++       + CP C     RK N+ +H+ I H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNV----KVYPCPFCFKEFTRKDNMTAHVKIIHK 65


>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          479- 511) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 25.8 bits (55), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEP 59
          F C+ C K +    +L+SH++   G++P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40


>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
          Of Human Zinc Finger Protein 64, Isoforms 1 And 2
          Length = 70

 Score = 25.8 bits (55), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 44 KRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHL 80
          K  L  H++  C   P F+C  CS+ TK+  NL  H+
Sbjct: 22 KAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHM 57


>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 32
          Length = 45

 Score = 25.4 bits (54), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQE 58
          F C  C K ++ K NL +H++   G++
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEK 39


>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          640- 672) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 25.4 bits (54), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEP 59
          + C +C K +  K +L  H+K   G++P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40


>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
          Length = 30

 Score = 25.4 bits (54), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 61 FQCPQCSYRTKRKGNLKSHLAIRH 84
          +QC  C  R+    NLK+H+  +H
Sbjct: 3  YQCQYCELRSADSSNLKTHIKTKH 26


>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
          Substituted For The Central Aromatic Residue
          Length = 30

 Score = 25.4 bits (54), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 61 FQCPQCSYRTKRKGNLKSHLAIRH 84
          +QC  C  R+    NLK+H+  +H
Sbjct: 3  YQCQYCEXRSADSSNLKTHIKTKH 26


>pdb|2K9H|A Chain A, The Hantavirus Glycoprotein G1 Tail Contains A Dual
          Cchc- Type Classical Zinc Fingers
          Length = 57

 Score = 25.4 bits (54), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 30 GMFACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTK-RKGNLKSHLAI 82
          G   CD+C  E +  + L SH++         QCP C   T+  +  L++H +I
Sbjct: 2  GSMVCDVCHHECETAKELESHRQS----CINGQCPYCMTITEATESALQAHYSI 51


>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          631- 663) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 25.4 bits (54), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEP 59
          + C  C K +  + NL++H+K   G++P
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKP 40


>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          563- 595) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 25.4 bits (54), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEP 59
          F C+ C K +     L+SH++   G++P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40


>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
          Protein Odd-Skipped-Related 2 Splicing Isoform 2
          Length = 106

 Score = 25.0 bits (53), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAI 82
          F C  C + +    NL  H++    + P + C  C    +R+ +L+ H  I
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDHRYI 67


>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
          Zinc Finger Protein 406
          Length = 36

 Score = 25.0 bits (53), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 8/20 (40%), Positives = 15/20 (75%)

Query: 31 MFACDLCDKEYKYKRNLYSH 50
          +F C+ C+K +K+K +L +H
Sbjct: 9  IFTCEYCNKVFKFKHSLQAH 28


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.457 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,934,844
Number of Sequences: 62578
Number of extensions: 106966
Number of successful extensions: 355
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 102
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)