RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12011
(94 letters)
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 43.5 bits (103), Expect = 2e-07
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 32 FACDLCDKEYKYKRNLYSHKK---DECGQEPRFQCPQCSYRTKRKGNLKSHLAIRH 84
C++C + K +L H++ + F C C R ++ ++ +H + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSH 62
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 40.6 bits (96), Expect = 2e-06
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAI 82
C C K L H++ C P F+C CS+ TK+ NL H+
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKK 59
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 37.9 bits (89), Expect = 3e-05
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEPR-FQCPQCSYRTKRKGNLKSHLAIRH 84
+ C +C + + H + + F CP C RK +L HL +H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 36.8 bits (86), Expect = 6e-05
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEPR-FQCPQCSYRTKRKGNLKSHLAIRHE 85
+ C +C + Y + N H + + + CP C RK N+ +H+ I H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 33.2 bits (75), Expect = 0.003
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 30 GMFACDLCDKEYKYKRNLYSHKKDE---CGQEPRFQCPQCSYRTKRKGNLKSHLAIRH 84
G + C C + H E + C +C++ TKR L H H
Sbjct: 17 GGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH 74
Score = 27.0 bits (59), Expect = 0.48
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 45 RNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAIRH 84
+ + H + E ++C C+++T H+ H
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH 42
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 32.0 bits (72), Expect = 0.004
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 34 CDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAI 82
C+ C K L H + P + C C++ K KGNL H+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKS 51
Score = 25.1 bits (54), Expect = 1.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 60 RFQCPQCSYRTKRKGNLKSHL 80
++ C +C R K+ LK H+
Sbjct: 1 KYICEECGIRXKKPSMLKKHI 21
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 29.5 bits (65), Expect = 0.078
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 13 LFPESFLTWSNLKPNLNGMFACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKR 72
L ES + L F C LC + +L H + E CP C
Sbjct: 56 LLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTS 112
Query: 73 KGNLKSHLAIRH 84
+ H+ +H
Sbjct: 113 TDSALDHVCKKH 124
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 29.0 bits (66), Expect = 0.090
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSH 79
F C +C + + +L +H + G++P F C C + R K H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRH 81
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.9 bits (61), Expect = 0.11
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 61 FQCPQCSYRTKRKGNLKSHLA 81
++CPQCSY + K NL HL
Sbjct: 10 YKCPQCSYASAIKANLNVHLR 30
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 28.6 bits (65), Expect = 0.11
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAIRHE 85
F C +C + + +L +H + G++P F C C + R K H I+H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHRDIQHI 56
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 28.7 bits (63), Expect = 0.15
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 29 NGMFACDLCDK-EYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAIRH 84
G +C C K L H + C QE F C C + + +K H+ H
Sbjct: 32 KGSVSCPTCQAVGRKTIEGLKKHME-NCKQEM-FTCHHCGKQLRSLAGMKYHVMANH 86
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 27.8 bits (63), Expect = 0.19
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 34 CDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSH 79
CD C ++YK NL SHK G++P ++C C + R NLK+H
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTH 64
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 27.9 bits (63), Expect = 0.24
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 32 FACDLCDKEYKYKRNLYSHKK---DECGQEPRFQCPQCSYRTKRKGNLKSH 79
+AC CDK ++ K+ L H K D F C +C R+ + H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 27.3 bits (61), Expect = 0.29
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 32 FACDL--CDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHL 80
+AC + CD+ + L H + GQ+P FQC C R +L +H+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 69
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 27.1 bits (61), Expect = 0.43
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSH 79
AC++C K ++ +L HK G++P + CP C R KRK + H
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYH 54
Score = 24.4 bits (54), Expect = 4.1
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEPR-FQCPQCSYRTKRKGNLKSHLAIRH 84
++C +C +K K + H + G + + C C R +L H+ H
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 0.43
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 6/21 (28%)
Query: 72 RKGNLKSHLAIRHECYLDDSA 92
+K L++ L + Y DDSA
Sbjct: 23 KK--LQASLKL----YADDSA 37
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 27.4 bits (60), Expect = 0.46
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 46 NLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAIRHE 85
+ + G +F+C CS L H+
Sbjct: 6 SGKLYGSIFTG-ASKFRCKDCSAAYDTLVELTVHMNETGH 44
Score = 27.0 bits (59), Expect = 0.58
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 34 CDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAIRH 84
+ KR+L + E Q+ +C C + + +L H+
Sbjct: 55 NNPKRWSKPRKRSLLEMEGKEDAQKV-LKCMYCGHSFESLQDLSVHMIKTK 104
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 26.1 bits (57), Expect = 0.61
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCS 67
AC++C K ++ +L HK G++P + S
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPSS 47
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 26.6 bits (60), Expect = 0.73
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 34 CDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSH 79
C CD +L H + + P F+C C Y ++ L H
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTVH 83
Score = 26.2 bits (59), Expect = 0.91
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 34 CDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAI 82
C++C K + K L +H + G +P ++C C Y +L HL I
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRI 58
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 26.4 bits (57), Expect = 1.1
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSH 79
+ C LC+ + SH++ CP CS R + H
Sbjct: 17 YQCRLCNAKLSSLLEQGSHER---LCRNAAVCPYCSLRFFSPELKQEH 61
Score = 23.7 bits (50), Expect = 9.3
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 2/53 (3%)
Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAIRH 84
C C + H+ + + C +C K ++ H H
Sbjct: 43 AVCPYCSLRFFSPELKQEHESKC--EYKKLTCLECMRTFKSSFSIWRHQVEVH 93
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 26.3 bits (59), Expect = 1.1
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSH 79
C C K++ K L H + G++P F+CP+C RK NL H
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEH 54
Score = 25.9 bits (58), Expect = 1.5
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 32 FACDLCDKEYKYKRNLYSHKKDEC---GQEPRFQCPQCSYRTKRKGNLKSH 79
F C C K Y K NL H+ C ++ F C C +R+ L+ H
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCSVCQETFRRRMELRLH 85
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 26.0 bits (58), Expect = 1.3
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 32 FACDL--CDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHL 80
+ C CD + L H + G +P FQC C+ R +L H+
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKP-FQCGVCNRSFSRSDHLALHM 95
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 1.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 61 FQCPQCSYRTKRKGNLKSHL 80
F+C C Y T+ K NLK+H+
Sbjct: 10 FKCSLCEYATRSKSNLKAHM 29
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 25.7 bits (55), Expect = 1.7
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 29 NGMFACDLCDK-EYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAIRHE 85
G C C+ K L H + + +C C + K K L H H
Sbjct: 22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 25.7 bits (57), Expect = 2.2
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEP--------RFQCPQCSYRTKRKGNLKSH 79
CD+ + L +H E P +CP+ K K L +H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Score = 24.2 bits (53), Expect = 7.6
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 34 CDLCDKEYKYKRNLYSHKKDECGQEPRFQC--PQCSYRTKRKGNLKSHL 80
C K +K K L +H + G++P F C P C R NLK H
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKP-FPCPFPGCGKIFARSENLKIHK 112
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 24.0 bits (53), Expect = 3.0
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 61 FQCPQCSYRTKRKGNLKSHLAI 82
+ C C R + LKSHL I
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRI 33
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 25.6 bits (55), Expect = 3.1
Identities = 8/42 (19%), Positives = 12/42 (28%)
Query: 44 KRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAIRHE 85
K +QC CS +L +H+A
Sbjct: 164 KHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGL 205
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 24.1 bits (52), Expect = 3.1
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 56 GQEPRFQC--PQCSYRTKRKGNLKSHL 80
+ F+C P C+ KR+ N++SH+
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHI 40
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 23.9 bits (51), Expect = 3.2
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 61 FQCPQCSYRTKRKGNLKSHL 80
F CP C R R L H+
Sbjct: 3 FACPACPKRFMRSDALSKHI 22
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.6 bits (50), Expect = 3.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 34 CDLCDKEYKYKRNLYSHK 51
CD+C K++K K L SHK
Sbjct: 12 CDMCGKKFKSKGTLKSHK 29
>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog,
putative C-like transposable element, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6
Length = 73
Score = 24.4 bits (52), Expect = 4.0
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 3/31 (9%)
Query: 57 QEPRFQCPQCSYRTKRKG---NLKSHLAIRH 84
Q + C C + G NL HL H
Sbjct: 26 QWKKIYCRICMAQIAYSGNTSNLSYHLEKNH 56
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 24.4 bits (54), Expect = 5.5
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 32 FACDL--CDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSH 79
+ CD C++ + L H++ G +P FQC C + R +LK+H
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKP-FQCKTCQRKFSRSDHLKTH 85
>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin +
alpha-helix; NMR {Drosophila melanogaster} SCOP:
g.37.1.2 PDB: 1jn7_A
Length = 36
Score = 23.2 bits (49), Expect = 5.8
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 34 CDLCDKEYKYKRNLYSHKKDECGQEP 59
C CD + Y + +HK+ C +P
Sbjct: 11 CSTCDISFNYVKTYLAHKQFYCKNKP 36
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 22.9 bits (48), Expect = 6.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 61 FQCPQCSYRTKRKGNLKSHLAIRH 84
+QC C +R+ NLK+H+ +H
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKH 26
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 22.9 bits (48), Expect = 7.0
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 31 MFACDLCDKEYKYKRNLYSHKKDECGQE 58
+F C+ C+K +K+K +L +H + ++
Sbjct: 9 IFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC
AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC
CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1
d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Length = 513
Score = 24.3 bits (53), Expect = 7.1
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 28 LNGMFACDLCDKE 40
+NG FA + +
Sbjct: 117 VNGRFATVVRTGD 129
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 23.7 bits (52), Expect = 7.2
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 37 CDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAIRH 84
CDK + L H+K G + CS+ K H+A H
Sbjct: 39 CDKRFSLPSRLKRHEKVHAGYPC-KKDDSCSFVGKTWTLYLKHVAECH 85
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 23.3 bits (49), Expect = 7.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 63 CPQCSYRTKRKGNLKSHLAIRH 84
CP C ++ NL+ HL +RH
Sbjct: 27 CPICYAVIRQSRNLRRHLELRH 48
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 22.5 bits (48), Expect = 8.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 60 RFQCPQCSYRTKRKGNLKSHL 80
+F CP+C R R +L H+
Sbjct: 2 KFACPECPKRFMRSDHLTLHI 22
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 23.0 bits (48), Expect = 8.7
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 57 QEPRFQCPQCSYRTKRKGNLKSHLAIRH 84
E + CP C R KRK + H+
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 22.8 bits (48), Expect = 9.0
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 32 FACDLCDKEYKYKRNL-----YSHKKDECGQEPRFQCP 64
+ACD+C K YK + L +SH +E G++ P
Sbjct: 8 YACDICGKRYKNRPGLSYHYAHSHLAEEEGEDKEDSQP 45
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 23.9 bits (51), Expect = 9.5
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 29 NGMFACDLCDKEYKYKRNLYSHKK 52
G+ C C + + NL +H +
Sbjct: 48 GGLHRCLACARYFIDSTNLKTHFR 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.457
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,320,989
Number of extensions: 59975
Number of successful extensions: 367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 105
Length of query: 94
Length of database: 6,701,793
Length adjustment: 61
Effective length of query: 33
Effective length of database: 4,998,612
Effective search space: 164954196
Effective search space used: 164954196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.6 bits)