RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12011
(94 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 28.9 bits (64), Expect = 0.016
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 32 FACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAI 82
+ C C K + +K H + C C + K K +L H+ I
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGHMKI 52
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 27.3 bits (61), Expect = 0.055
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 61 FQCPQCSYRTKRKGNLKSHLAIRH 84
++C C R + G +K H+ +H
Sbjct: 9 YECYICHARFTQSGTMKMHILQKH 32
Score = 22.2 bits (48), Expect = 4.9
Identities = 3/21 (14%), Positives = 7/21 (33%)
Query: 32 FACDLCDKEYKYKRNLYSHKK 52
+ C +C + + H
Sbjct: 9 YECYICHARFTQSGTMKMHIL 29
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.6 bits (59), Expect = 0.096
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 58 EPRFQCPQCSYRTKRKGNLKSHLAIRHE 85
E + C C ++K L H H+
Sbjct: 6 EKPYACSHCDKTFRQKQLLDMHFKRYHD 33
Score = 21.6 bits (46), Expect = 9.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 32 FACDLCDKEYKYKRNLYSHKK 52
+AC CDK ++ K+ L H K
Sbjct: 9 YACSHCDKTFRQKQLLDMHFK 29
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 26.5 bits (59), Expect = 0.096
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 61 FQCPQCSYRTKRKGNLKSHLAIRH 84
+ C C R +L H+ H
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVH 29
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 26.0 bits (58), Expect = 0.15
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 58 EPRFQCPQCSYRTKRKGNLKSHLAI 82
E + C +C R L H +
Sbjct: 5 EKPYGCVECGKAFSRSSILVQHQRV 29
Score = 22.2 bits (48), Expect = 4.3
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 32 FACDLCDKEYKYKRNLYSHKK 52
+ C C K + L H++
Sbjct: 8 YGCVECGKAFSRSSILVQHQR 28
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 25.8 bits (57), Expect = 0.21
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 61 FQCPQCSYRTKRKGNLKSHLAI 82
F CP+C R R +L H+
Sbjct: 3 FACPECPKRFMRSDHLSKHIKT 24
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 25.3 bits (56), Expect = 0.30
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 61 FQCPQCSYRTKRKGNLKSHLAI 82
F C C+ R+ +LK H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS 24
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.0 bits (54), Expect = 0.42
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 60 RFQCPQCSYRTKRKGNLKSHLAIRH 84
+F CP C RK +L HL +H
Sbjct: 2 KFHCPHCDTVIARKSDLGVHLRKQH 26
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 24.7 bits (53), Expect = 0.42
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 61 FQCPQCSYRTKRKGNLKSHLAIRH 84
+QC C +R+ NLK+H+ +H
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKH 26
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 24.4 bits (53), Expect = 0.78
Identities = 4/33 (12%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 50 HKKDECGQEPRFQCPQCSYRTKRKGNLKSHLAI 82
+ + + ++C +C +L H
Sbjct: 3 SEWQQRERRR-YKCDECGKSFSHSSDLSKHRRT 34
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 24.2 bits (52), Expect = 0.82
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 61 FQCPQCSYRTKRKGNLKSHLAIRHE 85
F+C CS+ TK+ NL H+ H
Sbjct: 3 FKCNYCSFDTKQPSNLSKHMKKFHG 27
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 23.7 bits (52), Expect = 0.93
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 58 EPRFQCPQCSYRTKRKGNLKSHLAI 82
+ FQC C R +L +H+
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRT 25
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 23.9 bits (52), Expect = 1.1
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 58 EPRFQCPQCSYRTKRKGNLKSHLAIRHE 85
+ F C C K N HL + +
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKVHTD 32
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 22.7 bits (48), Expect = 2.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 58 EPRFQCPQCSYRTKRKGNLKSHL 80
E + CP C R KRK + H+
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHV 23
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster
[TaxId: 7227]}
Length = 54
Score = 23.2 bits (49), Expect = 3.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 63 CPQCSYRTKRKGNLKSHLAIRH 84
CP C ++ NL+ HL +RH
Sbjct: 27 CPICYAVIRQSRNLRRHLELRH 48
>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different
fingers {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 36
Score = 22.6 bits (48), Expect = 3.3
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 34 CDLCDKEYKYKRNLYSHKKDECGQEP 59
C CD + Y + +HK+ C +P
Sbjct: 11 CSTCDISFNYVKTYLAHKQFYCKNKP 36
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 22.4 bits (48), Expect = 3.6
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 61 FQCPQCSYRTKRKGNLKSHLAI 82
FQCP C R +L H
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKR 33
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 22.3 bits (47), Expect = 3.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 61 FQCPQCSYRTKRKGNLKSHLAIRHE 85
+ CP C RK N+ +H+ I H+
Sbjct: 2 YPCPFCFKEFTRKDNMTAHVKIIHK 26
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 22.7 bits (49), Expect = 4.8
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 30 GMFACDLCDKEYKYKRNLYSHKK 52
G+ C C + + NL +H +
Sbjct: 14 GLHRCLACARYFIDSTNLKTHFR 36
>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 21.9 bits (46), Expect = 5.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 61 FQCPQCSYRTKRKGNLKSHL 80
+ C C++ K KGNL H+
Sbjct: 2 YHCTYCNFSFKTKGNLTKHM 21
>d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 22.5 bits (48), Expect = 8.7
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 61 FQCPQCSYRTKRK 73
QCP+ + RK
Sbjct: 112 MQCPKTHTKEFRK 124
>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 516
Score = 22.9 bits (48), Expect = 9.1
Identities = 8/53 (15%), Positives = 15/53 (28%)
Query: 16 ESFLTWSNLKPNLNGMFACDLCDKEYKYKRNLYSHKKDECGQEPRFQCPQCSY 68
++F TW + + KR L + E G+ +
Sbjct: 85 KAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNWVEASADVAE 137
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.457
Gapped
Lambda K H
0.267 0.0399 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 344,719
Number of extensions: 14235
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 65
Length of query: 94
Length of database: 2,407,596
Length adjustment: 57
Effective length of query: 37
Effective length of database: 1,624,986
Effective search space: 60124482
Effective search space used: 60124482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.8 bits)