BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12012
         (79 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
          Length = 60

 Score = 35.4 bits (80), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAV 75
          F C+ C + Y+  SGL +H++   G  PR  CP+C    + +S +  H+ V
Sbjct: 5  FFCNFCGKTYRDASGLSRHRRAHLGYRPR-SCPECGKCFRDQSEVNRHLKV 54


>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
          Northeast Structural Genomics Consortium
          Length = 74

 Score = 34.7 bits (78), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAV 75
          + CD C   ++YK  L  HK    G++P Y+C  C  +  + ++LKTH  +
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRI 67


>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
          (Tatazf;clone #6)
 pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
          (Tatazf;clone #6)
          Length = 90

 Score = 33.9 bits (76), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 25 FVCDV--CDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
          + C V  CDRR+  K+ L  H +   G++P +QC  C     Q++SL  H+
Sbjct: 5  YACPVESCDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFSQQASLNAHI 54


>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
           Repeats Of Murine Gli-Kruppel Family Member Hkr3
          Length = 124

 Score = 33.5 bits (75), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 24  LFVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAVKHS 78
           +F C VC   ++ +  L  H     G+ P Y+C  C  +  QK  L++HM   HS
Sbjct: 66  VFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLHS 119


>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
          Domain Of Zinc Finger Protein 435
          Length = 77

 Score = 31.2 bits (69), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAV 75
          + CD C + + + S L +H++   G++P Y+C +C     Q+S L  H  V
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGHHRV 68


>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
          Domains Of Human Zinc Finger Protein 297b
          Length = 110

 Score = 30.8 bits (68), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 21 HAGL--FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMA 74
          H GL  + C VC +++K K  L  H K   G +P Y+C  C  R   + S   H+ 
Sbjct: 32 HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKRFMWRDSFHRHVT 86


>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
          (CLONE #2)
 pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
          (CLONE #2)
          Length = 90

 Score = 30.8 bits (68), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 25 FVCDV--CDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
          + C V  CDRR+  K+ L  H +   G++P +QC  C     Q + L  H+
Sbjct: 5  YACPVESCDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFSQHTGLNQHI 54



 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 6  RFSESFTSWEASEPNHAGL--FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQC 59
          RFS+  T+ +     H G   F C +C R +   +GL QH +   G++P + C  C
Sbjct: 15 RFSQK-TNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP-FACDIC 68


>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
          Protein Zfy: 2d Nmr Structure Of An Even Finger And
          Implications For "jumping-Linker" Dna Recognition
          Length = 30

 Score = 30.8 bits (68), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 54 YQCPQCPHRTKQKSSLKTHMAVKHS 78
          YQC  C +R+   S+LKTH+  KHS
Sbjct: 3  YQCQYCEYRSADSSNLKTHIKTKHS 27


>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
          Triplets
 pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
          Triplets
          Length = 190

 Score = 30.4 bits (67), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
          + C  C + +  K  L +H++   G++P Y+CP+C     Q+++L+ H 
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAHQ 97



 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 25  FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
           + C  C + +  +  L+ H++   G++P Y+CP+C     ++ +L  H 
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALNVHQ 181



 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 8  SESFTSWEASEPNHAGLFVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKS 67
          S S  +  A EP     + C  C + +     L +H++   G++P Y+CP+C      K 
Sbjct: 6  SSSSVAQAALEPGEK-PYACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKK 63

Query: 68 SLKTHM 73
           L  H 
Sbjct: 64 DLTRHQ 69



 Score = 26.9 bits (58), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 25  FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
           + C  C + +   + L  H++   G++P Y+CP+C     ++ +L TH 
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTHQ 153


>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
          Zinc-Binding Domain Of The Zinc Finger Protein 64,
          Isoforms 1 And 2
          Length = 96

 Score = 30.4 bits (67), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 22 AGLFVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAVKHSD 79
          +G   C+VC + +  K  L  H +   G +P Y+C  C +     SSL  H+ + HSD
Sbjct: 6  SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRI-HSD 61



 Score = 26.6 bits (57), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 21 HAGL--FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
          H G+  + C  CD      S L +H +    + P ++C  CP+ ++  S L  H+
Sbjct: 31 HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTVHL 84


>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          311- 343) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 30.4 bits (67), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEP 52
          F CD CD+ ++ +S L  H+    G++P
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTGEKP 40


>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
          Site)
 pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
          Site)
          Length = 90

 Score = 30.0 bits (66), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 25 FVCDV--CDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
          + C V  CDRR+   S L +H +   G++P +QC  C     +   L TH+
Sbjct: 5  YACPVESCDRRFSDSSNLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54


>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
          Substituted For The Central Aromatic Residue
          Length = 30

 Score = 29.6 bits (65), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 54 YQCPQCPHRTKQKSSLKTHMAVKHS 78
          YQC  C  R+   S+LKTH+  KHS
Sbjct: 3  YQCQYCEXRSADSSNLKTHIKTKHS 27


>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
          Length = 30

 Score = 29.6 bits (65), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 54 YQCPQCPHRTKQKSSLKTHMAVKHS 78
          YQC  C  R+   S+LKTH+  KHS
Sbjct: 3  YQCQYCEFRSADSSNLKTHIKTKHS 27


>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
          Bound To Dna
 pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
          Bound To Dna
 pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
          Bound To Dna
          Length = 87

 Score = 29.6 bits (65), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAV 75
          + C  C + +   S L +H++   G++P Y+CP+C     Q S L+ H   
Sbjct: 5  YKCPECGKSFSQSSNLQKHQRTHTGEKP-YKCPECGKSFSQSSDLQKHQRT 54



 Score = 26.6 bits (57), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 7  FSESFTSWEASEPNHAG--LFVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQC 59
          FS+S ++ +  +  H G   + C  C + +   S L +H++   G++P Y+CP+C
Sbjct: 14 FSQS-SNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP-YKCPEC 66


>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
          Length = 30

 Score = 29.3 bits (64), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 54 YQCPQCPHRTKQKSSLKTHMAVKHS 78
          YQC  C  R+   S+LKTH+  KHS
Sbjct: 3  YQCQYCELRSADSSNLKTHIKTKHS 27


>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
          In Zinc Finger Protein 278
          Length = 95

 Score = 29.3 bits (64), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
            C++C + ++    L +HK    G++P Y CP C  R K+K  +  H+
Sbjct: 8  VACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHV 55


>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
          Site)
 pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
          Site)
 pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
          Site)
          Length = 90

 Score = 29.3 bits (64), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 25 FVCDV--CDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
          + C V  CDRR+   + L +H +   G++P +QC  C     +   L TH+
Sbjct: 5  YACPVESCDRRFSRSADLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54


>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
          Site)
          Length = 90

 Score = 28.9 bits (63), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 25 FVCDV--CDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
          + C V  CDRR+     L +H +   G++P +QC  C     +   L TH+
Sbjct: 5  YACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54


>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
 pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
          Length = 90

 Score = 28.5 bits (62), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 25 FVCDV--CDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
          + C V  CDRR+   + L +H +   G++P +QC  C     +   L TH+
Sbjct: 5  YACPVESCDRRFSRSAELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54


>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
          Zif268- Dna Complex At 2.1 Angstroms
          Length = 87

 Score = 28.5 bits (62), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 21 HAGLFVCDV--CDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
          H   + C V  CDRR+     L +H +   G++P +QC  C     +   L TH+
Sbjct: 1  HERPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54


>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
          Length = 73

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 25 FVCDV--CDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
          + C V  CDRR+     L +H +   G++P +QC  C     +   L TH+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 69


>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
          Protein Zfy: 2d Nmr Structure Of An Even Finger And
          Implications For "jumping-Linker" Dna Recognition
          Length = 30

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 54 YQCPQCPHRTKQKSSLKTHMAVKHS 78
          YQC  C  R    S+LKTH+  KHS
Sbjct: 3  YQCQYCEKRFADSSNLKTHIKTKHS 27


>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
          Length = 82

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAV 75
          F C +C + +K  S L  H        P Y C  C  R  QKS +K H  +
Sbjct: 2  FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFI 51


>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
          To Dna
 pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
          To Dna
          Length = 87

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 25 FVCDV--CDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
          + C V  CDRR+     L +H +   G++P +QC  C     +   L TH+
Sbjct: 4  YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 53


>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
 pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 25 FVCDV--CDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
          + C V  CDRR+     L +H +   G++P +QC  C     +   L TH+
Sbjct: 5  YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54


>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          528- 560) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEP 52
          + CDVC + ++Y S L  H++   G++P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40


>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
          Of Human Zinc Finger Protein 64, Isoforms 1 And 2
          Length = 70

 Score = 27.7 bits (60), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 37 KSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAVKHSD 79
          K+ L  H++  C   P ++C  C   TKQ S+L  HM   H D
Sbjct: 22 KAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKKFHGD 63


>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          491- 523) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEP 52
          ++C VC + +  +S L +H+K   G++P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40


>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          463- 495) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 27.3 bits (59), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEP 52
          F+C  C + + +K+ L  H+K   G+ P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40


>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          556- 588) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 26.9 bits (58), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEP 52
          + CDVC + + + + L QH++   G++P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP 40


>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
          Finger Domain Bound To Dna
 pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
          Finger Domain Bound To Dna
 pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
          Finger Domain Bound To Dna
          Length = 119

 Score = 26.9 bits (58), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 25 FVCDV--CDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAV 75
          + CD   C+RR+     L +H++   G +P +QC  C  +  +   LKTH   
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKP-FQCKTCQRKFSRSDHLKTHTRT 88


>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
 pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
          Form
 pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
          Length = 57

 Score = 26.9 bits (58), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 27 CDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAVKH 77
          C  C + ++    L  H +   G++P Y+C  C +   QK+SL+ H+   H
Sbjct: 7  CSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFCEYAAAQKTSLRYHLERHH 56


>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
          Human Ubi-D4
          Length = 48

 Score = 26.9 bits (58), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 25 FVCDVCDRRYKYKSGLYQH 43
          + CD+C +RYK + GL  H
Sbjct: 8  YACDICGKRYKNRPGLSYH 26


>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
          Nmr, 25 Structures
          Length = 60

 Score = 26.6 bits (57), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAVKHS 78
          FVC+VC R +  +  L +H +    ++P Y C  C     ++  L  H    HS
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQKIHS 55


>pdb|4EPA|A Chain A, The Crystal Structure Of The Ferric Yersiniabactin Uptake
           Receptor Fyua From Yersinia Pestis
          Length = 655

 Score = 26.2 bits (56), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 3   GQFRFSESFTSWEASEPNHAGLFVCDVCDRRYK 35
           G +   +S   W+A+E  +  ++V ++ DRRY+
Sbjct: 594 GTYATLDSSLGWQATERXNISVYVDNLFDRRYR 626


>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          479- 511) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 25.8 bits (55), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEP 52
          F C+ C +R+   S L+ H++   G++P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40


>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          563- 595) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 25.8 bits (55), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEP 52
          F C+ C +R+   S L+ H++   G++P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40


>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          640- 672) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 25.8 bits (55), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEP 52
          + C VC + +  K+ L QH+K   G++P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40


>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
          Cys2His2 Zinc Finger From The Human Enhancer Binding
          Protein Mbp-1
          Length = 57

 Score = 25.4 bits (54), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAVK 76
          ++C+ C  R K  S L +H +      P Y C  C    K K +L  HM  K
Sbjct: 2  YICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKSK 52


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.133    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,452,175
Number of Sequences: 62578
Number of extensions: 78047
Number of successful extensions: 347
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 106
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)