RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12012
(79 letters)
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 42.0 bits (99), Expect = 5e-07
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKY--ECGKEPRYQCPQCPHRTKQKSSLKTHMAVKHSD 79
C++C + K+ L H++ E R+ C C R ++ S+ H + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 40.9 bits (97), Expect = 8e-07
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 27 CDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMA 74
C C K+ L H++ C P ++C C TKQ S+L HM
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMK 58
Score = 28.6 bits (65), Expect = 0.058
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 54 YQCPQCPHRTKQKSSLKTHM 73
+C +C + K++L+ H
Sbjct: 10 EKCSECSYSCSSKAALRIHE 29
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 39.8 bits (94), Expect = 3e-06
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPR-YQCPQCPHRTKQKSSLKTHMAVKHS 78
+ C +C R+ + H + + + CP C +KS L H+ +HS
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 37.9 bits (89), Expect = 2e-05
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPR-YQCPQCPHRTKQKSSLKTHMAVKH 77
+ C VC R Y + S +H + + Y CP C +K ++ H+ + H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 34.9 bits (79), Expect = 5e-04
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 18 EPNHAGLFVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAVKH 77
FVC +C + L QH +Y E CP C S H+ KH
Sbjct: 68 ASKAISQFVCPLCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHVCKKH 124
Query: 78 S 78
+
Sbjct: 125 N 125
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 32.4 bits (75), Expect = 0.003
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 27 CDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
C CD S L +H + + P ++C CP+ ++ S L H+
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTVHL 84
Score = 29.7 bits (68), Expect = 0.034
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 27 CDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
C+VC + + K L H + G +P Y+C C + SSL H+
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHL 56
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 31.6 bits (71), Expect = 0.003
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAV 75
++C+ C R K S L +H + P Y C C K K +L HM
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKS 51
Score = 23.5 bits (50), Expect = 5.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 53 RYQCPQCPHRTKQKSSLKTHM 73
+Y C +C R K+ S LK H+
Sbjct: 1 KYICEECGIRXKKPSMLKKHI 21
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 30.9 bits (71), Expect = 0.008
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 27 CDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
CD C ++YK L HK G++P Y+C C + + ++LKTH
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHT 65
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 31.3 bits (72), Expect = 0.008
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
F C +C R + L H + G++P + C C + + K H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHT 82
Score = 29.0 bits (66), Expect = 0.053
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 30 CDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
CDRR+ L +H + G++P +QC C + L TH+
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 30.9 bits (71), Expect = 0.009
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
C++C + ++ L +HK G++P Y CP C R K+K + H+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHV 55
Score = 28.6 bits (65), Expect = 0.082
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPR-YQCPQCPHRTKQKSSLKTHMAVKHS 78
+ C VC R+K K + H + G + Y C C + L H+ HS
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 30.5 bits (70), Expect = 0.016
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
F C +C R + L H + G++P + C C + + K H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHR 51
Score = 27.5 bits (62), Expect = 0.23
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMA 74
F CD+C R++ +H+ + + + L+ +A
Sbjct: 32 FACDICGRKFARSDERKRHRDIQHIL--PILEDKVEELLSKNYHLENEVA 79
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 30.5 bits (68), Expect = 0.019
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 21 HAGLFVCDVCDRRYKYKSGLYQH---KKYECGKEPRYQCPQCPHRTKQKSSLKTHMAVKH 77
G + C C + + H + Y C +C TK+ +L H H
Sbjct: 15 VEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH 74
Query: 78 SD 79
Sbjct: 75 PG 76
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 29.4 bits (67), Expect = 0.025
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
FVC+VC R + + L +H + ++P Y C C ++ L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHA 50
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 30.6 bits (68), Expect = 0.039
Identities = 8/31 (25%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 49 GKEPRYQCPQCPHRTKQKSSLKTHMAVKHSD 79
YQC C L H+A H
Sbjct: 176 SSGHGYQCHVCSAVLFSPLDLDAHVAS-HGL 205
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 29.8 bits (68), Expect = 0.046
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAVKHS 78
F C VC ++ + L H G+ P Y+C C + QK L++HM HS
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 29.0 bits (66), Expect = 0.088
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYEC---GKEPRYQCPQCPHRTKQKSSLKTHM 73
F C C + Y K L +H+ C ++ + C C +++ L+ HM
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCSVCQETFRRRMELRLHM 86
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 28.9 bits (66), Expect = 0.053
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
+ C C +R+ KS + +H G++P ++C C Q S+L TH
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKCQVCGKAFSQSSNLITHS 77
Score = 28.2 bits (64), Expect = 0.12
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
F C +C + +K S L H P Y C C R QKS +K H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHT 49
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 28.7 bits (63), Expect = 0.098
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 23 GLFVCDVCDR-RYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAVKHSD 79
G C C K GL +H + C +E + C C + + + +K H+ H+
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHME-NCKQEM-FTCHHCGKQLRSLAGMKYHVMANHNS 88
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 27.9 bits (63), Expect = 0.14
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKY---ECGKEPRYQCPQCPHRTKQKSSLKTHM 73
+ C CD+ ++ K L H K + C +C +++++ H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 28.6 bits (63), Expect = 0.17
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 53 RYQCPQCPHRTKQKSSLKTHMAVKHSD 79
Y C C R S+L H+ H D
Sbjct: 116 SYVCNVCNARFSTMSALSEHLRSDHRD 142
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 27.6 bits (62), Expect = 0.17
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 30 CDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAVKH 77
CD+R+ S L +H+K G + C K + H+A H
Sbjct: 39 CDKRFSLPSRLKRHEKVHAGYPC-KKDDSCSFVGKTWTLYLKHVAECH 85
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 28.0 bits (61), Expect = 0.17
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 23 GLFVCDVCDR-RYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAVKHS 78
G VC C+ K GL +H + + +C C + K K+ L H +HS
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 26.7 bits (60), Expect = 0.19
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 54 YQCPQCPHRTKQKSSLKTHM 73
Y C C R + +LK+H+
Sbjct: 12 YPCEICGTRFRHLQTLKSHL 31
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 27.9 bits (63), Expect = 0.20
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 30 CDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
C+RR+ L +H++ G +P +QC C + + LKTH
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKP-FQCKTCQRKFSRSDHLKTHT 86
Score = 27.1 bits (61), Expect = 0.43
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQC--PQCPHRTKQKSSLKTHM 73
F C C R++ L H + G++P + C P C + + L H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKP-FSCRWPSCQKKFARSDELVRHH 116
Score = 24.0 bits (53), Expect = 4.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 30 CDRRYKYKSGLYQHKKYECGKEPRYQC--PQCPHRTKQKSSLKTHM 73
C++RY S L H + G++P YQC C R + LK H
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKP-YQCDFKDCERRFSRSDQLKRHQ 58
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 27.6 bits (62), Expect = 0.29
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 8/57 (14%)
Query: 25 FVCDVCDRRYKYKSGLYQH-------KKYECGKEPRYQ-CPQCPHRTKQKSSLKTHM 73
CDR + L H + ++ CP+ K K L H+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Score = 23.8 bits (52), Expect = 7.6
Identities = 6/40 (15%), Positives = 11/40 (27%), Gaps = 1/40 (2%)
Query: 38 SGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAVKH 77
K + + C L TH+ ++H
Sbjct: 11 KQELSCKWIDEAQLS-RPKKSCDRTFSTMHELVTHVTMEH 49
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 27.4 bits (62), Expect = 0.35
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTH 72
+ C C + + + L H++ G++P Y+CP+C ++ +L TH
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTH 152
Score = 26.6 bits (60), Expect = 0.62
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTH 72
+ C C + + K L +H++ G++P Y+CP+C Q+++L+ H
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAH 96
Score = 26.6 bits (60), Expect = 0.71
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTH 72
+ C C + + L +H++ G++P Y+CP+C K L H
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRH 68
Score = 26.3 bits (59), Expect = 0.92
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTH 72
+ C C + + + L+ H++ G++P Y+CP+C ++ +L H
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALNVH 180
Score = 26.3 bits (59), Expect = 0.99
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTH 72
+ C C + + ++ L H++ G++P Y CP+C Q + L+ H
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLRAH 124
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 26.5 bits (59), Expect = 0.36
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 25 FVCDV--CDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
+ C V CDRR+ L +H + G++P +QC C + L TH+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 69
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 26.4 bits (59), Expect = 0.40
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 25 FVCDV--CDRRYKYKSGLYQHKKYECGKEPRYQCPQ--CPHRTKQKSSLKTHM 73
CD C R + + L HKKY+ + + CP+ C K LK HM
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
Score = 24.4 bits (54), Expect = 2.7
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 25 FVCD--VCDRRYKYKSGLYQHKKYECGKEPRYQCPQC 59
F C C + + +K L +H K Y C
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICEFS 74
>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin +
alpha-helix; NMR {Drosophila melanogaster} SCOP:
g.37.1.2 PDB: 1jn7_A
Length = 36
Score = 25.5 bits (55), Expect = 0.48
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 18 EPNHAGLFVCDVCDRRYKYKSGLYQHKKYECGKEP 52
C CD + Y HK++ C +P
Sbjct: 2 SAAEVMKKYCSTCDISFNYVKTYLAHKQFYCKNKP 36
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 26.6 bits (60), Expect = 0.52
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
+ CD+C + ++ + L H+ ++P ++C +C Q +L H
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKP-FKCQECGKGFCQSRTLAVHK 93
Score = 26.2 bits (59), Expect = 0.76
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTH 72
F+C C R + L H++ + P Y C C +++ L+ H
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDH 64
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 26.3 bits (59), Expect = 0.55
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 27 CDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTH 72
CD C + + + S L +H++ G++P Y+C +C Q+S L H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGH 65
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 26.4 bits (59), Expect = 0.56
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 25 FVC--DVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
+ C + CD R+ L +H + G +QC C + L HM
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTG-AKPFQCGVCNRSFSRSDHLALHM 95
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 26.4 bits (57), Expect = 0.61
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 18 EPNHAGLFVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAVKH 77
E VC C R+ +H+ + + C +C K S+ H H
Sbjct: 36 ERLCRNAAVCPYCSLRFFSPELKQEHESKC--EYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Query: 78 S 78
+
Sbjct: 94 N 94
Score = 25.2 bits (54), Expect = 2.2
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 24 LFVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMA 74
++ C +C+ + H++ CP C R + H +
Sbjct: 16 VYQCRLCNAKLSSLLEQGSHERLC---RNAAVCPYCSLRFFSPELKQEHES 63
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 26.4 bits (59), Expect = 0.72
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 9/55 (16%)
Query: 27 CDVCDRRYKYKSGLYQHKKYEC---GKEPRYQCPQCPHRT-----KQKSSLKTHM 73
D C + + + L H E ++ + C K + L HM
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWGGCSRELRPFKAQYMLVVHM 59
Score = 24.9 bits (55), Expect = 2.8
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 16/59 (27%)
Query: 25 FVC--DVCDRRYKYKSGLYQH--------KKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
++C + C + + S +H K Y C + P C R SSL+ H+
Sbjct: 98 YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVC------KLPGCTKRYTDPSSLRKHV 150
Score = 24.5 bits (54), Expect = 4.4
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 54 YQCPQCPHRTKQKSSLKTHMAVKH 77
+ C + L H+ +H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEH 27
Score = 23.3 bits (51), Expect = 10.0
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 30 CDRRYKYKSGLYQHKKYECGKEPRYQCPQ--CPHRTKQKSSLKTHMAVKHSD 79
C + Y L H + G++P Y C C S H HS+
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAFSNASDRAKHQNRTHSN 125
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 24.8 bits (53), Expect = 0.93
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 54 YQCPQCPHRTKQKSSLKTHMAVKHS 78
YQC C R+ S+LKTH+ KHS
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHS 27
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 25.1 bits (54), Expect = 1.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKY 46
+ CD+C +RYK + GL H +
Sbjct: 8 YACDICGKRYKNRPGLSYHYAH 29
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 25.6 bits (57), Expect = 1.1
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 25 FVCDV--CDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
+ CD C ++ L +H + G +QC +C + L HM
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTG-HRPFQCQKCDRAFSRSDHLALHM 85
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 24.9 bits (55), Expect = 1.1
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 54 YQCPQCPHRTKQKSSLKTHM 73
Y C QC Q+ SL H
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQ 31
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 25.5 bits (57), Expect = 1.2
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
+ C VC +++K K L H K G +P Y+C C R + S H+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKRFMWRDSFHRHV 85
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 24.4 bits (54), Expect = 1.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 54 YQCPQCPHRTKQKSSLKTHM 73
Y+C C R Q + L+ H+
Sbjct: 12 YKCETCGARFVQVAHLRAHV 31
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 25.3 bits (55), Expect = 1.6
Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 14/60 (23%)
Query: 25 FVCDVCDRRYKYKSGLYQH-----------KKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
CDR + L H + C E +CP+ K K L H+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE---ECPREGKSFKAKYKLVNHI 82
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 25.2 bits (54), Expect = 2.5
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 1/53 (1%)
Query: 27 CDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAVKHSD 79
+ +R S H+ G E R Q + L+ + +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARG-EKRLQREKSEQVLDNPEDLRGPIHLSVLR 234
Score = 25.2 bits (54), Expect = 3.0
Identities = 1/29 (3%), Positives = 7/29 (24%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPR 53
+ ++ L ++ +
Sbjct: 209 LQREKSEQVLDNPEDLRGPIHLSVLRQGK 237
>3ayx_B Membrane-bound hydrogenase small subunit; oxidoreductase,
membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio
marinus} PDB: 3ayy_B 3ayz_B
Length = 283
Score = 25.0 bits (54), Expect = 2.6
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 22 AGLFVCDVCDRRYKYKSGLYQHKKYECGKEPRY 54
+ D C RR + +G + + + G Y
Sbjct: 191 YSQRIHDKCYRRPHFDAGQFVEEWDDEGARKGY 223
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 23.6 bits (50), Expect = 2.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 54 YQCPQCPHRTKQKSSLKTHMAVKHSD 79
Y C QC + + K+ LK H+ KHS+
Sbjct: 10 YYCSQCHYSSITKNCLKRHVIQKHSN 35
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 24.7 bits (53), Expect = 2.9
Identities = 7/36 (19%), Positives = 10/36 (27%), Gaps = 1/36 (2%)
Query: 38 SGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
S + G ++C C L HM
Sbjct: 5 SSGKLYGSIFTGASK-FRCKDCSAAYDTLVELTVHM 39
Score = 23.2 bits (49), Expect = 9.9
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 54 YQCPQCPHRTKQKSSLKTHMA 74
+C C H + L HM
Sbjct: 81 LKCMYCGHSFESLQDLSVHMI 101
>1rdl_1 SUB-MBP-C, mannose-binding protein-C; C-type lectin,
calcium-binding protein; HET: MMA; 1.70A {Rattus
rattus} SCOP: d.169.1.1 PDB: 1rdj_1* 1rdk_1* 1rdi_1*
1rdm_1* 1rdn_1* 1rdo_1 1bv4_A 1kza_1* 1kzb_1* 1kzc_1*
1kzd_1* 1kze_1*
Length = 113
Score = 24.5 bits (54), Expect = 3.0
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 4/25 (16%)
Query: 3 GQFRFSE----SFTSWEASEPNHAG 23
F +T+W EPN+ G
Sbjct: 58 NVFEDLTGNRVRYTNWNEGEPNNVG 82
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP:
d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A*
1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1*
2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1*
1fif_A 1fih_A*
Length = 149
Score = 24.6 bits (54), Expect = 3.3
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 3 GQFRFSE----SFTSWEASEPNHAG 23
GQF + ++++W+ EPN G
Sbjct: 94 GQFMYVTGGRLTYSNWKKDEPNDHG 118
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.7 bits (50), Expect = 3.4
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 16 ASEPNHAGLFVCDVCDRRYKYKSGLYQHKKYECGKE 51
S + +F C+ C++ +K+K L H + ++
Sbjct: 1 GSSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>3rgw_S Membrane-bound hydrogenase (NIFE) small subunit H; [NIFE]
hydrogenase, high-resolution knallgasbacteria,
proteobacteria; 1.50A {Ralstonia eutropha}
Length = 339
Score = 24.7 bits (53), Expect = 3.5
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 22 AGLFVCDVCDRRYKYKSGLYQHKKYECGKE 51
+ D C RR + +G + + +
Sbjct: 182 YSQRIHDKCYRRPHFDAGQFVEEWDDESAR 211
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.3 bits (49), Expect = 3.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 54 YQCPQCPHRTKQKSSLKTHMA 74
Y+CPQC + + K++L H+
Sbjct: 10 YKCPQCSYASAIKANLNVHLR 30
>2msb_A Mannose-binding protein-A; lectin; HET: BMA MAN; 1.70A {Rattus
rattus} SCOP: d.169.1.1 PDB: 1msb_A 1ytt_A*
Length = 115
Score = 24.1 bits (53), Expect = 4.1
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 3 GQFRFSE----SFTSWEASEPNHAG 23
GQF + ++++W+ EPN G
Sbjct: 60 GQFMYVTGGRLTYSNWKKDEPNDHG 84
>1hup_A Mannose-binding protein; alpha-helical coiled-coil, C-type lectin;
2.50A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Length = 141
Score = 24.2 bits (53), Expect = 4.4
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 3 GQFRFSE----SFTSWEASEPNHAG 23
GQF ++T+W EPN+AG
Sbjct: 86 GQFVDLTGNRLTYTNWNEGEPNNAG 110
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.1 bits (51), Expect = 4.8
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 12/27 (44%)
Query: 64 KQ-----KSSLKTH-------MAVKHS 78
KQ ++SLK + +A+K +
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKAT 45
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 22.9 bits (48), Expect = 5.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 54 YQCPQCPHRTKQKSSLKTHM 73
++C C + T+ KS+LK HM
Sbjct: 10 FKCSLCEYATRSKSNLKAHM 29
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense,
metalloprotein, sugar binding protein; 1.90A {Rattus
norvegicus} SCOP: d.169.1.1 h.1.1.1
Length = 168
Score = 24.3 bits (53), Expect = 5.2
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 3 GQFRFSE----SFTSWEASEPNHAG 23
GQF + ++++W+ EPN G
Sbjct: 113 GQFMYVTGGRLTYSNWKKDEPNDHG 137
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 23.7 bits (52), Expect = 6.6
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 28 DVCDRRYKYKSGLYQHKKYECGKEPR--YQCPQCPHRTKQKSSLKTHMAVKHSD 79
+ CD+R+ S L +H+K G + C K + H+A H D
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFV---GKTWTLYLKHVAECHQD 190
>3uqy_S Hydrogenase-1 small chain; membrane-bound hydrogenase,
oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB:
3usc_S* 3use_S*
Length = 335
Score = 23.9 bits (51), Expect = 6.8
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 22 AGLFVCDVCDRRYKYKSGLYQHKKYECGKEPRYQC 56
G + D C RR + +G + + ++ + C
Sbjct: 182 YGQRIHDKCYRRAHFDAGEFV-QSWDDDAARKGYC 215
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin,
C-type lectin, alpha-helical coiled coil, carbohydrate
recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP:
d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A*
3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A*
2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A*
1b08_A 3g84_A* ...
Length = 177
Score = 23.9 bits (52), Expect = 7.3
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Query: 3 GQFRFSE----SFTSWEASEPNHAG 23
G+F + +++W EPN G
Sbjct: 124 GKFTYPTGESLVYSNWAPGEPNDDG 148
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 23.6 bits (52), Expect = 7.4
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 30 CDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
C + ++ S + +H G + C +C + S LK H
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRV-HVCAECGKAFVESSKLKRHQ 54
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 22.3 bits (48), Expect = 7.5
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 51 EPRYQCPQCPHRTKQKSSLKTHM 73
+QCP C + L H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHR 31
>2ls8_A C-type lectin domain family 4 member D; structural genomics, NEW
YORK structural genomics research consortium, nysgrc,
PSI-biology, immune system; NMR {Homo sapiens}
Length = 156
Score = 23.5 bits (51), Expect = 7.9
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 6 RFSESFTSWEASEPNHAG 23
F+ W +EP+++
Sbjct: 80 PFNPRRVFWHKNEPDNSQ 97
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate
binding, lectin, mannose, sugar BIND protein; 1.80A
{Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A
3pak_A
Length = 148
Score = 23.5 bits (51), Expect = 8.1
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Query: 3 GQFRFSE----SFTSWEASEPNHAG 23
G F + + S+T+W EP G
Sbjct: 96 GDFHYLDGASVSYTNWYPGEPRGQG 120
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 22.5 bits (48), Expect = 8.4
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEP 52
F C CDR + ++ L QH++ K
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSG 40
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 22.5 bits (47), Expect = 8.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 54 YQCPQCPHRTKQKSSLKTHMAVKHSD 79
+ C +C R +++SLK H HSD
Sbjct: 11 FFCNECDCRFSEEASLKRHTLQTHSD 36
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and
CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Length = 182
Score = 23.3 bits (50), Expect = 9.7
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 5 FRFSESFTSWEASEPNHAG 23
F +S W EPN+AG
Sbjct: 126 FNKVQSARFWIPGEPNNAG 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.133 0.442
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,105,453
Number of extensions: 49153
Number of successful extensions: 473
Number of sequences better than 10.0: 1
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 208
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)