RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12012
(79 letters)
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 29.6 bits (67), Expect = 0.005
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 54 YQCPQCPHRTKQKSSLKTHMAVKHSD 79
Y+C C R Q ++K H+ KH++
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTE 34
Score = 22.6 bits (49), Expect = 2.3
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 25 FVCDVCDRRYKYKSGLYQHKK 45
+ C +C R+ + H
Sbjct: 9 YECYICHARFTQSGTMKMHIL 29
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 29.7 bits (66), Expect = 0.007
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
+ C C + + +KS +H Y C C + K K L HM
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGHM 50
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 28.4 bits (64), Expect = 0.016
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 54 YQCPQCPHRTKQKSSLKTHMAVKHS 78
Y C C + L H+ H+
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHT 30
Score = 23.0 bits (50), Expect = 1.6
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYECGKEPRYQC 56
++C C + + L H K E ++C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 27.6 bits (62), Expect = 0.030
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 51 EPRYQCPQCPHRTKQKSSLKTHM 73
E Y C +C + S L H
Sbjct: 5 EKPYGCVECGKAFSRSSILVQHQ 27
Score = 23.3 bits (51), Expect = 1.1
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 25 FVCDVCDRRYKYKSGLYQHKK 45
+ C C + + S L QH++
Sbjct: 8 YGCVECGKAFSRSSILVQHQR 28
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.9 bits (60), Expect = 0.048
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 51 EPRYQCPQCPHRTKQKSSLKTHMAVKH 77
E Y C C +QK L H H
Sbjct: 6 EKPYACSHCDKTFRQKQLLDMHFKRYH 32
Score = 21.9 bits (47), Expect = 3.8
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 25 FVCDVCDRRYKYKSGLYQHKK 45
+ C CD+ ++ K L H K
Sbjct: 9 YACSHCDKTFRQKQLLDMHFK 29
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 26.7 bits (58), Expect = 0.058
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 54 YQCPQCPHRTKQKSSLKTHMAVKHS 78
YQC C R+ S+LKTH+ KHS
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHS 27
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 26.7 bits (59), Expect = 0.065
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 42 QHKKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
+ + + + Y+C +C S L H
Sbjct: 2 RSEWQQRERRR-YKCDECGKSFSHSSDLSKHR 32
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 26.5 bits (59), Expect = 0.068
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 54 YQCPQCPHRTKQKSSLKTHM 73
+ CP+CP R + L H+
Sbjct: 3 FACPECPKRFMRSDHLSKHI 22
Score = 21.9 bits (47), Expect = 4.1
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 25 FVCDVCDRRYKYKSGLYQHKK 45
F C C +R+ L +H K
Sbjct: 3 FACPECPKRFMRSDHLSKHIK 23
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 26.0 bits (58), Expect = 0.12
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 54 YQCPQCPHRTKQKSSLKTHM 73
+ C C ++ LK H
Sbjct: 3 FVCEVCTRAFARQEHLKRHY 22
Score = 22.2 bits (48), Expect = 2.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 25 FVCDVCDRRYKYKSGLYQHKK 45
FVC+VC R + + L +H +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR 23
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 25.6 bits (57), Expect = 0.16
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 51 EPRYQCPQCPHRTKQKSSLKTHM 73
+ +QC C + L TH+
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHI 23
Score = 21.8 bits (47), Expect = 4.6
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 25 FVCDVCDRRYKYKSGLYQHKK 45
F C +C R + L H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR 24
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.0 bits (54), Expect = 0.26
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 53 RYQCPQCPHRTKQKSSLKTHMAVKHS 78
++ CP C +KS L H+ +HS
Sbjct: 2 KFHCPHCDTVIARKSDLGVHLRKQHS 27
>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different
fingers {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 36
Score = 24.5 bits (53), Expect = 0.50
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 27 CDVCDRRYKYKSGLYQHKKYECGKEP 52
C CD + Y HK++ C +P
Sbjct: 11 CSTCDISFNYVKTYLAHKQFYCKNKP 36
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 23.9 bits (52), Expect = 0.82
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 54 YQCPQCPHRTKQKSSLKTHM 73
+QCP C + L H
Sbjct: 12 FQCPDCDRSFSRSDHLALHR 31
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.4 bits (50), Expect = 1.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 54 YQCPQCPHRTKQKSSLKTHMAVKHSD 79
++C C TKQ S+L HM H D
Sbjct: 3 FKCNYCSFDTKQPSNLSKHMKKFHGD 28
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 22.0 bits (47), Expect = 3.4
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 51 EPRYQCPQCPHRTKQKSSLKTHM 73
+ + C C K++ H+
Sbjct: 5 KRPFVCRICLSAFTTKANCARHL 27
>d1yq9a1 e.19.1.1 (A:4-264) Nickel-iron hydrogenase, small subunit
{Desulfovibrio gigas [TaxId: 879]}
Length = 261
Score = 23.4 bits (50), Expect = 3.6
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 18 EPNHAGLFVCDVCDRRYKYKSGLYQHKKYECGKEPRY 54
G V D C R +++G + + Y
Sbjct: 173 PVMFFGETVHDNCPRLKHFEAGEFATSFGSPEAKKGY 209
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 23.2 bits (50), Expect = 4.4
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 24 LFVCDVCDRRYKYKSGLYQHKKYECGKEP 52
+++ D + + K +++K + P
Sbjct: 34 IYIDDFTLQYFGSKKQYERYRKKCTLRHP 62
>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
{Desulfovibrio fructosovorans [TaxId: 878]}
Length = 261
Score = 23.0 bits (49), Expect = 4.9
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 22 AGLFVCDVCDRRYKYKSGLYQHK 44
G V D C R +++ +
Sbjct: 176 YGELVHDNCPRLPHFEASEFAPS 198
>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 516
Score = 22.9 bits (48), Expect = 6.2
Identities = 8/53 (15%), Positives = 14/53 (26%)
Query: 9 ESFTSWEASEPNHAGLFVCDVCDRRYKYKSGLYQHKKYECGKEPRYQCPQCPH 61
++F +W+ + + K L YE GK
Sbjct: 85 KAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNWVEASADVAE 137
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 21.5 bits (46), Expect = 6.4
Identities = 5/30 (16%), Positives = 9/30 (30%), Gaps = 6/30 (20%)
Query: 44 KKYECGKEPRYQCPQCPHRTKQKSSLKTHM 73
+ + C C R + L+ H
Sbjct: 1 RPFMCT------WSYCGKRFTRSDELQRHK 24
>d1cc1s_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
{Desulfomicrobium baculatum [TaxId: 899]}
Length = 278
Score = 22.7 bits (48), Expect = 6.9
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 18 EPNHAGLFVCDVCDRRYKYKSGLYQHK 44
G + + C KY + +
Sbjct: 194 PLLFFGDNIHENCPYLDKYDNSEFAET 220
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor,
different fingers {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 36
Score = 21.2 bits (44), Expect = 7.9
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 25 FVCDVCDRRYKYKSGLYQHKKYEC 48
F+C C + S L H+ Y C
Sbjct: 9 FMCLPCGIAFSSPSTLEAHQAYYC 32
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 21.0 bits (44), Expect = 8.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 53 RYQCPQCPHRTKQKSSLKTHM 73
+Y C +C R K+ S LK H+
Sbjct: 1 KYICEECGIRAKKPSMLKKHI 21
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 21.6 bits (46), Expect = 9.5
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 23 GLFVCDVCDRRYKYKSGLYQHKK 45
GL C C R + + L H +
Sbjct: 14 GLHRCLACARYFIDSTNLKTHFR 36
>d2ghfa2 g.37.1.1 (A:9-44) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 21.2 bits (44), Expect = 9.6
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 42 QHKKYECGKEPRYQCPQCPHRTKQKSSLKTHMAVKHSD 79
Q+KK E G Y+C C +T + H+ +H +
Sbjct: 3 QNKKVEGG----YECKYCTFQTPDLNMFTFHVDSEHPN 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.133 0.442
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 289,548
Number of extensions: 11287
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 76
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)