BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12014
(78 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 12 YKGGGLFSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLC----SYRAKQKIHLTTHMA 67
+ G + C +C + + K LTRHQ G++P Y+CP C S RA + H TH
Sbjct: 44 HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAHQRTHTG 102
Query: 68 IR 69
+
Sbjct: 103 EK 104
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 12 YKGGGLFSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHM 66
+ G + C +C + + ++A+L HQ G++P Y CP C Q HL H
Sbjct: 72 HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLRAHQ 125
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 10 SLYKGGGLFSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHM 66
+L G ++C +C + + + L HQ G++P Y+CP C K LT H
Sbjct: 14 ALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRHQ 69
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 12 YKGGGLFSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHM 66
+ G ++C +C + + + A L HQ G++P Y+CP C ++ +L TH
Sbjct: 100 HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTHQ 153
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 12 YKGGGLFSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLC----SYRAKQKIHLTTHMA 67
+ G + C +C + + ++ +L HQ G++P Y+CP C S R +H TH
Sbjct: 128 HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALNVHQRTHTG 186
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 14 GGGLFSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAIRHHKK 73
G +C C ++++ L RH+ G++P Y CP+C R K+K ++ H+ H
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVR-SHDGS 61
Query: 74 LGKIY 78
+GK Y
Sbjct: 62 VGKPY 66
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 14 GGGLFSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAIRHHKK 73
G + C +C + + + + L +HQ G++P Y+CP C + HL+ H +KK
Sbjct: 29 GEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP-YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHM 66
+ C +C + + + ++L +HQ G++P Y+CP C Q L H
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKP-YKCPECGKSFSQSSDLQKHQ 52
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 14 GGGLFSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAIRHHK 72
G CS C + ++ L H G++P Y+C C Y A QK L H+ RHHK
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFCEYAAAQKTSLRYHLE-RHHK 57
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 9 DSLYKGGGLFSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
+ + + +F+CS C ++++ L H G+ P Y+C CS + QK L +HM
Sbjct: 58 NCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIK 116
Query: 69 RH 70
H
Sbjct: 117 LH 118
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 6 KLIDSLYKGGGLFSCSDCSRVYKKKASLTRHQTYECGQQPK--YRCPLCSYRAKQKIHLT 63
K+ + + G F C C + Y +K +L H+ C + + + C +C ++++ L
Sbjct: 24 KVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELR 83
Query: 64 THMA 67
HM
Sbjct: 84 LHMV 87
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 23 CSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHM 66
C R + + A LTRH GQ+P ++C +C + HLTTH+
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 23 CSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHM 66
C R + + A LTRH GQ+P ++C +C + HLTTH+
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
+ C C ++ K +L H+T G++P YRC +C + + +L TH I
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRI 67
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 23 CSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHM 66
C R + + SLTRH GQ+P ++C +C + HLTTH+
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 23 CSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHM 66
C R + ++LTRH GQ+P ++C +C + HLTTH+
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
Length = 66
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 13 KGGGLFSCSDCSRVYKKKASLTRHQTYECGQQPK-YRCPLCSYRAKQKIHLTTHMAIRH 70
+G + C CSRVY ++ RH + K Y CP C +K ++T H+ I H
Sbjct: 6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 23 CSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHM 66
C R + + LTRH GQ+P ++C +C + HLTTH+
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 23 CSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHM 66
C R + + LTRH GQ+P ++C +C + HLTTH+
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 69
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 23 CSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHM 66
C R + + LTRH GQ+P ++C +C + HLTTH+
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 32.3 bits (72), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 23 CSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHM 66
C R + + LTRH GQ+P ++C +C + HLTTH+
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 53
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 14 GGGLFSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
G L+ C C + + K+ RH + G +P Y C +C + K K HL HM I
Sbjct: 7 GDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKI 59
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
+ C +C + + + + L +HQ G++P Y+C C Q L H I
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINHQRI 64
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 17 LFSCSDCSRVYKKKASLTRHQTYECGQQP 45
LF C++C + + + +SLT HQ G++P
Sbjct: 12 LFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
+ C +C + + + L++H+ G++P Y+C C Q+ HL H +
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGHHRV 68
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain
Bound To The Adeno-Associated Virus P5 Initiator
Element
Length = 124
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 14 GGGLFSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPL--CSYRAKQKIHLTTHMAI 68
G + C++C + + + + L RHQ G++P ++C C R +L TH+ I
Sbjct: 31 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFNLRTHVRI 86
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ C +C + + +KA+LT+HQ G++P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAIRHHK 72
F C+ C + Y+ + L+RH+ G +P+ CP C + + + H+ + +K
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRS-CPECGKCFRDQSEVNRHLKVHQNK 58
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
F C++C + + +K++L+ HQ G++P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 30 KASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHM 66
KA+L H+ C +P ++C CS+ KQ +L+ HM
Sbjct: 22 KAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHM 57
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 22 DCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTH 65
DC R + + L RHQ G +P ++C C + + HL TH
Sbjct: 43 DCERRFSRSDQLKRHQRRHTGVKP-FQCKTCQRKFSRSDHLKTH 85
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ C +C +V+++ + L RHQ G++P
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
F CS+C +V+ K +L HQ G++P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
F C +C + Y ++ LT+HQ G++P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAIRHHKKLGK 76
F C C+R + ++ L RH ++P Y C LC+ ++ L H H LG+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ C++C +V++ + L+RHQ G++P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
F C++C + + A L++HQ G+ P
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2DMI|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Like Domains Of Human Teashirt Homolog 3
Length = 115
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 3 TTPKLIDSLYKGGGLFSCSDCSRVYKKKASLTRH 36
++ KL S++ G F C DCS Y LT H
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVH 38
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ CS+C + + +K++L HQ G++P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
F CS+C + + K++L HQ G++P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAIRHHKK 73
+ C +C KK + L +H +P Y C C++ K K +LT HM + H K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 16 GLFSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
G C C + + +K L H G +P Y+C C Y A L H+ I
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRI 58
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHM 66
+ C C +SL +H ++P ++C +C Y ++ LT H+
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTVHL 84
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ C++C +V+ + + L++HQ G++P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 11 LYKGGGLFSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLC 52
++ G F C C R + ++ASL H G++P + C +C
Sbjct: 28 IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP-FACDIC 68
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 23 CSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHM 66
C R + +K +L H GQ+P ++C +C Q+ L H+
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFSQQASLNAHI 54
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ CSDC + + KK+ L HQ G+ P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ C++C + ++ ++LT HQ G++P
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 23 CSRVYKKKASLTRHQTYECGQQPKYRC--PLCSYRAKQKIHLTTHMAI 68
C R++ + L H+ Y+ Q + C P C K HL HM +
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ C++C +V+ + + L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ C++C +V+ + + L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ C++C + ++ ++SL HQ G++P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ C++C +V+ + + L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ C+ C + + ++SLT HQ G++P
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ C++C + + +SLT HQ G++P
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 17 LFSCSDCSRVYKKKASLTRHQTYECGQQP 45
++ C +C + +++K SLT H+ G P
Sbjct: 10 VYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ CS+C + + +K++L+ HQ G++P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ C++C + + + + L RHQ G++P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ C++C + + + + L RHQ G++P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ C CS+ + +KA L +HQ G++P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
F C C + +K+ ++L+ H +P Y C C R QK + H I
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFI 51
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTH 65
+ C C + + +K+ + +H G++P ++C +C Q +L TH
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKCQVCGKAFSQSSNLITH 76
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 47 YRCPLCSYRAKQKIHLTTHMAIRHHKK 73
Y+C C YR+ +L TH+ +H K+
Sbjct: 3 YQCQYCEYRSADSSNLKTHIKTKHSKE 29
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ C C + + ASLT+HQ G++P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ C++C +V+ + + LT H G++P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAIRH 70
F C C R + + LT H G++P + C +C + + H I+H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHRDIQH 55
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ C++C + + +K+ L+ HQ G++P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 47 YRCPLCSYRAKQKIHLTTHM 66
Y+CP CSY + K +L H+
Sbjct: 10 YKCPQCSYASAIKANLNVHL 29
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 45
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 42 GQQPKYRCPLCSYRAKQKIHLTTHMAIRHHKKLGK 76
G++P Y CP+C R K+K ++ H+ H +GK
Sbjct: 7 GEKP-YSCPVCGLRFKRKDRMSYHVR-SHDGSVGK 39
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ C++C +V+ + + L RH+ G +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQP 45
C++C + +++ + L++HQ G++P
Sbjct: 13 CNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
F C DC + + L +H+ G++P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ C +C + + +S T+HQ GQ+P
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 47 YRCPLCSYRAKQKIHLTTHMAIRHHKK 73
Y+C C +R+ +L TH+ +H K+
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHSKE 29
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,431,390
Number of Sequences: 62578
Number of extensions: 72984
Number of successful extensions: 426
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 173
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)