RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12014
(78 letters)
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 41.7 bits (99), Expect = 4e-07
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
CS+CS KA+L H+ C +P ++C CS+ KQ +L+ HM
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKK 59
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 41.6 bits (98), Expect = 6e-07
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 18 FSCSDCSRVYKKKASLTRHQ---TYECGQQPKYRCPLCSYRAKQKIHLTTHMAIRH 70
C C ++KASL HQ + C C R ++ + H + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSH 62
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 38.7 bits (91), Expect = 7e-06
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPK-YRCPLCSYRAKQKIHLTTHMAIRHHK 72
+ C CSRVY ++ RH + K Y CP C +K ++T H+ I HK
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI-IHK 65
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 35.2 bits (82), Expect = 2e-04
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPK-YRCPLCSYRAKQKIHLTTHMAIRH 70
+ C C + + ++ H + + + CP C +K L H+ +H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 33.2 bits (75), Expect = 9e-04
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAIRHHKK 73
C +C KK + L +H +P Y C C++ K K +LT HM + H K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 23.5 bits (50), Expect = 4.4
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 46 KYRCPLCSYRAKQKIHLTTHMAIRHHKK 73
KY C C R K+ L H+ +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVR 28
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 32.1 bits (74), Expect = 0.003
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
F C C R + + LT H G++P + C +C + + H I
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHTKI 84
Score = 29.7 bits (68), Expect = 0.027
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 21 SDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
C R + + SLTRH GQ+P ++C +C + HLTTH+
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRT 56
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 31.7 bits (73), Expect = 0.006
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAIRHHKK 73
F C C R + + LT H G++P + C +C + + H I H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHRDI-QHIL 57
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 31.8 bits (71), Expect = 0.008
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 13 KGGGLFSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAIRH 70
K F C C + SL +H Y + CP+C H+ +H
Sbjct: 70 KAISQFVCPLCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHVCKKH 124
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 30.7 bits (70), Expect = 0.010
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 18 FSCS--DCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHM 66
++C C R + + LTRH GQ+P ++C +C + HLTTH+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 69
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 30.9 bits (71), Expect = 0.011
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
C C +SL +H ++P ++C +C Y ++ LT H+
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTVHLRS 86
Score = 30.5 bits (70), Expect = 0.015
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
C C + + +K L H G +P Y+C C Y A L H+ I
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRI 58
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 30.1 bits (69), Expect = 0.014
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
C C ++ K +L H+T G++P YRC +C + + +L TH I
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRI 67
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 30.9 bits (69), Expect = 0.015
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 13 KGGGLFSCSDCSRVYKKKASLTRHQTYE---CGQQPKYRCPLCSYRAKQKIHLTTHMAIR 69
K G + C C+ T H E Y C C++ K+ L+ H
Sbjct: 14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKY 73
Query: 70 H 70
H
Sbjct: 74 H 74
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 30.5 bits (70), Expect = 0.015
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
+C C ++++ L RH+ G++P Y CP+C R K+K ++ H+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRS 57
Score = 29.0 bits (66), Expect = 0.050
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPK-YRCPLCSYRAKQKIHLTTHMAIRH 70
+SC C +K+K ++ H G K Y C C + HL H+ H
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 30.5 bits (68), Expect = 0.025
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAIRHHKK 73
+ + +K SL + E Q+ +C C + + L+ HM H +
Sbjct: 53 DNNNPKRWSKPRKRSLLEMEGKEDAQKV-LKCMYCGHSFESLQDLSVHMIKTKHYQ 107
Score = 27.4 bits (60), Expect = 0.28
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 32 SLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAIRHHKK 73
S + + G +RC CS + LT HM H +
Sbjct: 6 SGKLYGSIFTGASK-FRCKDCSAAYDTLVELTVHMNETGHYR 46
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 28.6 bits (65), Expect = 0.043
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHM 66
F C C+R + ++ L RH ++P Y C LC+ ++ L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHA 50
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 29.4 bits (67), Expect = 0.053
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAIRH 70
F+CS C ++++ L H G+ P Y+C CS + QK L +HM H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 29.0 bits (66), Expect = 0.063
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYEC---GQQPKYRCPLCSYRAKQKIHLTTHMAI 68
F C C + Y +K +L H+ C +Q + C +C ++++ L HM
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCSVCQETFRRRMELRLHMVS 88
Score = 27.9 bits (63), Expect = 0.19
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHM 66
C C + + K L H G++P + CP C +K +L H
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHE 55
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 29.6 bits (67), Expect = 0.060
Identities = 13/57 (22%), Positives = 16/57 (28%), Gaps = 8/57 (14%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPK--------YRCPLCSYRAKQKIHLTTHM 66
C R + L H T E P+ CP K K L H+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Score = 24.6 bits (54), Expect = 3.2
Identities = 6/52 (11%), Positives = 11/52 (21%), Gaps = 1/52 (1%)
Query: 22 DCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAIRHHKK 73
+ + + Q C L TH+ + H
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLS-RPKKSCDRTFSTMHELVTHVTMEHVGG 52
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 28.5 bits (65), Expect = 0.081
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
F C C + +K+ ++L+ H +P Y C C R QK + H I
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFI 51
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 28.7 bits (63), Expect = 0.090
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 13 KGGGLFSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAIRHHK 72
+ ++ C C+ H+ + CP CS R H + +K
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERL---CRNAAVCPYCSLRFFSPELKQEHESKCEYK 68
Query: 73 KLG 75
KL
Sbjct: 69 KLT 71
Score = 23.3 bits (49), Expect = 9.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 18 FSCSDCSRVYKKKASLTRHQ 37
+C +C R +K S+ RHQ
Sbjct: 70 LTCLECMRTFKSSFSIWRHQ 89
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 28.3 bits (64), Expect = 0.093
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 18 FSCSDCSRVYKKKASLTRHQ---TYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
++CS C + +++K L H + C C ++ + H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 28.4 bits (62), Expect = 0.11
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 16 GLFSCSDCSRVYKKK-ASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAIRHHKK 73
G C C+ V +K L +H Q +C C + K K L H H K
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 29.1 bits (64), Expect = 0.12
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 13 KGGGLFSCSDCSRVYKKKASLTRHQTYECGQQPK------YRCPLCSYRAKQKIHLTTHM 66
GG +R+ + +++ G P Y+C +CS + L H+
Sbjct: 141 NEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHV 200
Query: 67 AIRH 70
A
Sbjct: 201 ASHG 204
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 27.8 bits (63), Expect = 0.13
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTH 65
+ C +C + + + + L +HQ G++P Y+C C Q L H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINH 61
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 27.6 bits (62), Expect = 0.19
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 18 FSCS--DCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHM 66
+ C+ C + + LTRH G +P ++C +C+ + HL HM
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKP-FQCGVCNRSFSRSDHLALHM 95
Score = 24.1 bits (53), Expect = 3.7
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 23 CSRVYKKKASLTRHQTYECGQQPKYRC--PLCSYRAKQKIHLTTHM 66
C++VY K + L H G++P Y+C C +R + LT H
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKP-YKCTWEGCDWRFARSDELTRHY 67
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 27.5 bits (62), Expect = 0.24
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPL--CSYRAKQKIHLTTHMAI 68
C++C + + + + L RHQ G++P ++C C R +L TH+ I
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFNLRTHVRI 86
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 27.0 bits (61), Expect = 0.28
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTH 65
+ C +C + + + L++H+ G++P Y+C C Q+ HL H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGH 65
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 26.4 bits (58), Expect = 0.29
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
F CS C RV+ ++ L +H+ +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 23.7 bits (51), Expect = 3.2
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 35 RHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
+ G+ P ++C C Q+ +L H
Sbjct: 2 SSGSSGAGENP-FKCSKCDRVFTQRNYLVQHERT 34
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 27.0 bits (61), Expect = 0.38
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
F C C R + K +L H+ ++P Y C +C +++ HL H I
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDHRYI 67
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 26.8 bits (60), Expect = 0.39
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 18 FSCS--DCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAIRH 70
+ C C + + + L RH+ G + CS+ K H+A H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPC-KKDDSCSFVGKTWTLYLKHVAECH 85
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 26.8 bits (58), Expect = 0.49
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 16 GLFSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAIRHHKK 73
G SC C V +K + C Q+ + C C + + + H+ H+
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHMENCKQEM-FTCHHCGKQLRSLAGMKYHVMANHNSL 89
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 27.1 bits (59), Expect = 0.52
Identities = 6/44 (13%), Positives = 12/44 (27%)
Query: 3 TTPKLIDSLYKGGGLFSCSDCSRVYKKKASLTRHQTYECGQQPK 46
+ + +L +G +V L +Q K
Sbjct: 194 SQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQGK 237
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 26.8 bits (60), Expect = 0.64
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 9/57 (15%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYEC---GQQPKYRCPLCSYRA-----KQKIHLTTHM 66
CS+ + + L H E ++ + C K + L HM
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWGGCSRELRPFKAQYMLVVHM 59
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 25.4 bits (55), Expect = 1.1
Identities = 10/51 (19%), Positives = 23/51 (45%)
Query: 11 LYKGGGLFSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIH 61
++ G CS C ++ ++++L+R +T C + K C + +
Sbjct: 12 IHLGDRSQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNE 62
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 25.6 bits (57), Expect = 1.2
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPL--CSYRAKQKIHLTTHM 66
F C C R + + L H G++P + C C + + L H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKP-FSCRWPSCQKKFARSDELVRHH 116
Score = 24.4 bits (54), Expect = 3.3
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 21 SDCSRVYKKKASLTRHQTYECGQQPKYRCPL--CSYRAKQKIHLTTHM 66
C++ Y K + L H G++P Y+C C R + L H
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKP-YQCDFKDCERRFSRSDQLKRHQ 58
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 24.9 bits (53), Expect = 1.2
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQ 43
C +C ++++ + L HQ G+
Sbjct: 13 SECQECGKIFRHSSLLIEHQALHAGE 38
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 25.9 bits (58), Expect = 1.2
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTH 65
+ C +C + + K LTRHQ G++P Y+CP C Q+ +L H
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAH 96
Score = 25.1 bits (56), Expect = 2.2
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
C +C + + ++A+L HQ G++P Y CP C Q HL H
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLRAHQRT 127
Score = 24.3 bits (54), Expect = 5.0
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTH 65
++C +C + + + L HQ G++P Y+CP C K LT H
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRH 68
Score = 23.6 bits (52), Expect = 6.9
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTH 65
C +C + + ++ +L HQ G++P Y+CP C ++ L H
Sbjct: 136 CPECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALNVH 180
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 24.4 bits (54), Expect = 1.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 47 YRCPLCSYRAKQKIHLTTHMAI 68
Y+C C R Q HL H+ I
Sbjct: 12 YKCETCGARFVQVAHLRAHVLI 33
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 25.9 bits (56), Expect = 1.5
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 46 KYRCPLCSYRAKQKIHLTTHMAIRH 70
Y C +C+ R L+ H+ H
Sbjct: 116 SYVCNVCNARFSTMSALSEHLRSDH 140
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 24.5 bits (53), Expect = 1.5
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCS 53
+C C ++++ L RH+ G++P Y S
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPSS 47
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 24.4 bits (54), Expect = 1.6
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
F CS C + + K+ L HQ ++P
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKP-SGP 41
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 25.3 bits (55), Expect = 1.7
Identities = 13/61 (21%), Positives = 17/61 (27%), Gaps = 8/61 (13%)
Query: 14 GGGLFSCSDCSRVYKKKASLTRHQTYE---CGQQPKYRC--PLCSYRAK---QKIHLTTH 65
C R + L H T E +Q + C C K K L H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Query: 66 M 66
+
Sbjct: 82 I 82
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 24.5 bits (52), Expect = 1.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 49 CPLCSYRAKQKIHLTTHMAIRHHKKLG 75
CP+C +Q +L H+ +RH K G
Sbjct: 27 CPICYAVIRQSRNLRRHLELRHFAKPG 53
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 24.0 bits (53), Expect = 1.8
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
F C+ C + ++ K +L HQ G++
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKS-GPS 43
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics,
ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 56
Score = 24.6 bits (53), Expect = 1.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 41 CGQQPKYRCPLCSYR 55
C ++PKYRCP C
Sbjct: 18 CLEKPKYRCPACRVP 32
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 25.1 bits (56), Expect = 1.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 22 DCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
C + + K+ RH + G +P Y C +C + K K HL HM I
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKI 59
Score = 23.2 bits (51), Expect = 9.2
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHM 66
+ C C + +K K L H G +P Y C +C+ R + H+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKRFMWRDSFHRHV 85
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei
structure initiative; 2.00A {Nitrosomonas europaea atcc
19718}
Length = 189
Score = 25.5 bits (56), Expect = 2.0
Identities = 11/55 (20%), Positives = 15/55 (27%), Gaps = 7/55 (12%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAIRHHKKL 74
CS C + E P+Y CP C Q + K+
Sbjct: 6 CSQC-------GGEVILRIPEGDTLPRYICPKCHTIHYQNPKVIVGCIPEWENKV 53
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 2.3
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
F CS+C +V+ K +L HQ G++P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP-SGP 43
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 23.7 bits (52), Expect = 2.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ C +C + +++K SLT H+ G P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGP 38
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 2.3
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
CSDC + + K+ L HQ G++
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERH-SGP 43
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 24.0 bits (51), Expect = 2.3
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQ 44
C +C ++ + SL HQ GQ+
Sbjct: 13 HQCRECGEIFFQYVSLIEHQVLHMGQK 39
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 2.6
Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
F C++C + + +K++L+ HQ G++P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP-SGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 2.6
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
F C +C + Y ++ LT+HQ G++P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP-SGP 43
Score = 22.5 bits (49), Expect = 7.7
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 35 RHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
+ G++P ++C C Q++HLT H +
Sbjct: 2 SSGSSGTGEKP-FKCGECGKSYNQRVHLTQHQRV 34
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 23.6 bits (52), Expect = 2.9
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 7/30 (23%)
Query: 20 CSDCSRVYKKKASLTRHQ-------TYECG 42
CS+C + + +K L HQ G
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSSG 42
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.7 bits (52), Expect = 2.9
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
C +C + + +S T+HQ GQ+P
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRP-SGP 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 3.1
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
F C C + + ++ L RH ++P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP-SGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 3.2
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
+ C +C + + +KA+LT+HQ G++P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP-SGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 3.3
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
F C DC + + L +H+ G++P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP-SGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 3.3
Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
+ C++C +V++ + L+RHQ G++P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP-SGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 23.3 bits (51), Expect = 3.5
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 18 FSCSDCSRVYKKKASLTRHQ 37
C +C R + K+ L +HQ
Sbjct: 13 HQCHECGRGFTLKSHLNQHQ 32
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 23.3 bits (51), Expect = 3.7
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
C +C + +K K+SL H+ G++P
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKP-SGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 3.7
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
C++C + + K+ L HQ +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKH-SGP 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 23.2 bits (51), Expect = 3.8
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 47 YRCPLCSYRAKQKIHLTTHMAI 68
Y C +C R + L +H+ I
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRI 33
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 4.0
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
C C + Y K +L HQ G++P
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERP-SGP 43
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 23.4 bits (51), Expect = 4.0
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 18 FSCSDCSRVYKKKASLTRHQ 37
+SC++C + L +HQ
Sbjct: 11 YSCAECKETFSDNNRLVQHQ 30
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 4.1
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
+ CSDC + + +K+ L HQ G++
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERH-SGP 43
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 23.4 bits (51), Expect = 4.2
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
+ C C + + ++ SL HQ P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 4.2
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
+ CS+C + + LT+H ++P
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKP-SGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 4.2
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
C+ C + + +++L +HQ G++P
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKP-SGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 4.3
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
CS+C + + +K++L+ HQ G++P
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKP-SGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 4.3
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
F C++C + + + +SLT HQ G++P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP-SGP 43
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 24.0 bits (53), Expect = 4.4
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC--PLCSYRAKQKIHLTTHM 66
+ C + Y K + L H G++P Y C C ++ + LT H
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHY 57
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 4.6
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
+ C C + + A L RHQ G++P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP-SGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 4.6
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
+ C +C + + +K L HQ G++P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP-SGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 4.8
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
+ C DC + Y ++ +L HQ G++
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKT-SGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 5.1
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
CSDC + + KK+ L HQ G+ P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENP-SGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 22.8 bits (50), Expect = 5.2
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
Query: 20 CSDCSRVYKKKASLTRHQT-------YECG 42
C++C + + K++L HQ G
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSSG 44
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.8 bits (50), Expect = 5.3
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
+ CS+C + + +K++L HQ G++P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP-SGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.8 bits (50), Expect = 5.3
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
+ C++C +V+ + + LT H G++P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP-SGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 5.4
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
C C + ++ +SLT HQ G++P
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKP-SGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 5.7
Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
+ C++C + + +++L +HQ Q+P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKP-SGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 5.7
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
+ C++C + + +K+ L+ HQ G++P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP-SGP 43
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 23.9 bits (51), Expect = 6.2
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 8 IDSLYKGGGLFSCSDCSRVYKKKASLTRHQ 37
D GGGL C C+R + +L H
Sbjct: 41 FDPDLPGGGLHRCLACARYFIDSTNLKTHF 70
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 6.2
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
F C +C + + + + L HQ G++P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP-SGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 6.3
Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
+ C C + ++ + L +H + G++P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERP-SGP 43
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 22.9 bits (48), Expect = 6.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 47 YRCPLCSYRAKQKIHLTTHMA 67
Y+CP CSY + K +L H+
Sbjct: 10 YKCPQCSYASAIKANLNVHLR 30
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 24.1 bits (51), Expect = 6.3
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 41 CGQQPKYRCPLCSYRAK 57
Q P ++CP+C
Sbjct: 283 QLQIPTWQCPVCQIDIA 299
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 6.5
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
+ C CS+ + +KA L +HQ G++P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP-SGP 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 22.9 bits (50), Expect = 6.5
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
C +C + + +SL HQ G++P
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKP-SGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 6.6
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
+ C++C + + +K+ L RH+ G++P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP-SGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.8 bits (50), Expect = 6.6
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
+ C +C +V+++ + L RHQ G++P
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP-SGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 22.9 bits (50), Expect = 6.7
Identities = 8/32 (25%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
+ C++C +V+ + + L++HQ G++P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP-SGP 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 6.7
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
C++C + + +SLT HQ G++P
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKP-SGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 22.8 bits (50), Expect = 6.8
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
C++C + + + A L +HQ G++P
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKP-SGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.5 bits (49), Expect = 7.0
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
F C +C + + + + L HQ G++P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP-SGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.5 bits (49), Expect = 7.1
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
C++C + + + + L RHQ G++P
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKP-SGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.5 bits (49), Expect = 7.2
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
+ C +C + YK++ L HQ G++
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKL-SGP 43
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 23.7 bits (52), Expect = 7.2
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 19 SCSDCSRVYKKKASLTRHQTYECGQQPKYRC--PLCSYRAKQKIHLTTHMAI 68
S +DC Y K L H G++P + C C HLT H
Sbjct: 16 SFADCGAAYNKNWKLQAHLCKHTGEKP-FPCKEEGCEKGFTSLHHLTRHSLT 66
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.5 bits (49), Expect = 7.3
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
CS C + + + SL+ HQ G++P
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKP-SGP 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 22.5 bits (49), Expect = 7.3
Identities = 4/32 (12%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
+ C++C + + + + L H ++
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKS-SGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.5 bits (49), Expect = 7.3
Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
C++C + ++ ++LT HQ G++P
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKP-SGP 43
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring
domain, structural GE consortium, SGC; 2.39A {Homo
sapiens} PDB: 2asq_B
Length = 360
Score = 23.8 bits (50), Expect = 7.4
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 41 CGQQPKYRCPLCSYRAK 57
++P + CP+C +A
Sbjct: 249 NEKKPTWICPVCDKKAA 265
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 22.5 bits (49), Expect = 7.4
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 7/30 (23%)
Query: 20 CSDCSRVYKKKASLTRHQT-------YECG 42
C +C +V+ +K L HQ G
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSSG 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.4 bits (49), Expect = 7.5
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
F CS+C + + K++L HQ G++P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP-SGP 43
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 22.5 bits (49), Expect = 7.6
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 18 FSCSDCSRVYKKKASLTRHQ 37
++C++C + + + LTRHQ
Sbjct: 13 YNCNECGKAFTRIFHLTRHQ 32
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.5 bits (49), Expect = 7.8
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
C++C + + + + L RHQ G++P
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKP-SGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 22.5 bits (49), Expect = 7.8
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
F C++C + + + L HQ G++P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP-SGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.5 bits (49), Expect = 7.9
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
C++C + + +++L HQ G++P
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKP-SGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.5 bits (49), Expect = 8.0
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
C+ C + + ++SLT HQ G++P
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKP-SGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.5 bits (49), Expect = 8.0
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
C C + + ASLT+HQ G++P
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKP-SGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.5 bits (49), Expect = 8.1
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
CS C + + KK+ L HQ G++P
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKP-SGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 22.5 bits (49), Expect = 8.1
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQP 45
CSDC + + + ++ +H+ G++P
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.5 bits (49), Expect = 8.4
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
+ C++C +V+ + + L HQ G +P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP-SGP 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 22.5 bits (49), Expect = 8.4
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
F C +C + + + HQ G++P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKP-SGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.4 bits (49), Expect = 8.4
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
+ C++C +V+ + + L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP-SGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 22.5 bits (49), Expect = 8.5
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
C +C + + + L H G++P
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKP-SGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.5 bits (49), Expect = 8.7
Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
C++C + ++ ++SL HQ G++P
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKP-SGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 22.1 bits (48), Expect = 9.5
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 20 CSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
C +C + ++ + L +HQ G++P
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKP-SGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 22.5 bits (49), Expect = 9.6
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
F C +C + + ++++L H G++P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKP-SGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.5 bits (49), Expect = 9.8
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
+ C++C +V+ + + L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP-SGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 22.1 bits (48), Expect = 9.9
Identities = 5/32 (15%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQPKYRC 49
F C++C + + +++ L H ++
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKS-SGP 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.136 0.439
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,152,338
Number of extensions: 49382
Number of successful extensions: 500
Number of sequences better than 10.0: 1
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 231
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.2 bits)