RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12014
         (78 letters)



>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 53

 Score = 28.5 bits (63), Expect = 0.016
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 22 DCSRVYKKKASLTRHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
           C + +  K+   RH +        Y C +C  + K K HL  HM I
Sbjct: 7  QCGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGHMKI 52


>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 26.9 bits (60), Expect = 0.056
 Identities = 7/28 (25%), Positives = 13/28 (46%)

Query: 47 YRCPLCSYRAKQKIHLTTHMAIRHHKKL 74
          Y C +C  R  Q   +  H+  +H + +
Sbjct: 9  YECYICHARFTQSGTMKMHILQKHTENV 36



 Score = 21.1 bits (45), Expect = 9.7
 Identities = 3/20 (15%), Positives = 8/20 (40%)

Query: 18 FSCSDCSRVYKKKASLTRHQ 37
          + C  C   + +  ++  H 
Sbjct: 9  YECYICHARFTQSGTMKMHI 28


>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 39

 Score = 25.3 bits (56), Expect = 0.18
 Identities = 7/24 (29%), Positives = 9/24 (37%)

Query: 47 YRCPLCSYRAKQKIHLTTHMAIRH 70
          Y C  C     +  HL  H+   H
Sbjct: 6  YICQSCGKGFSRPDHLNGHIKQVH 29


>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 25.4 bits (56), Expect = 0.22
 Identities = 8/27 (29%), Positives = 9/27 (33%)

Query: 47 YRCPLCSYRAKQKIHLTTHMAIRHHKK 73
          Y C  C    +QK  L  H    H   
Sbjct: 9  YACSHCDKTFRQKQLLDMHFKRYHDPN 35



 Score = 21.6 bits (46), Expect = 5.5
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 18 FSCSDCSRVYKKKASLTRHQ 37
          ++CS C + +++K  L  H 
Sbjct: 9  YACSHCDKTFRQKQLLDMHF 28


>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 33

 Score = 24.5 bits (54), Expect = 0.34
 Identities = 5/22 (22%), Positives = 7/22 (31%)

Query: 47 YRCPLCSYRAKQKIHLTTHMAI 68
          Y C  C     +   L  H  +
Sbjct: 8  YGCVECGKAFSRSSILVQHQRV 29



 Score = 22.2 bits (48), Expect = 2.7
 Identities = 5/20 (25%), Positives = 12/20 (60%)

Query: 18 FSCSDCSRVYKKKASLTRHQ 37
          + C +C + + + + L +HQ
Sbjct: 8  YGCVECGKAFSRSSILVQHQ 27


>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 29

 Score = 24.6 bits (54), Expect = 0.35
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 47 YRCPLCSYRAKQKIHLTTHMAI 68
          + CP C  R  +  HL+ H+  
Sbjct: 3  FACPECPKRFMRSDHLSKHIKT 24



 Score = 21.5 bits (46), Expect = 6.0
 Identities = 5/20 (25%), Positives = 12/20 (60%)

Query: 18 FSCSDCSRVYKKKASLTRHQ 37
          F+C +C + + +   L++H 
Sbjct: 3  FACPECPKRFMRSDHLSKHI 22


>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
          Saccharomyces cerevisiae sequence}
          Length = 29

 Score = 24.5 bits (54), Expect = 0.40
 Identities = 5/22 (22%), Positives = 10/22 (45%)

Query: 47 YRCPLCSYRAKQKIHLTTHMAI 68
          + C +C+    ++ HL  H   
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRS 24



 Score = 21.8 bits (47), Expect = 3.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 18 FSCSDCSRVYKKKASLTRHQ 37
          F C  C+R + ++  L RH 
Sbjct: 3  FVCEVCTRAFARQEHLKRHY 22


>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
          protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 38

 Score = 24.4 bits (53), Expect = 0.52
 Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 1/34 (2%)

Query: 35 RHQTYECGQQPKYRCPLCSYRAKQKIHLTTHMAI 68
          R +  +  ++  Y+C  C         L+ H   
Sbjct: 2  RSEWQQRERRR-YKCDECGKSFSHSSDLSKHRRT 34


>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 28

 Score = 23.7 bits (52), Expect = 0.78
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 47 YRCPLCSYRAKQKIHLTTHMAI 68
          ++C +C     +  HLTTH+  
Sbjct: 4  FQCRICMRNFSRSDHLTTHIRT 25



 Score = 22.2 bits (48), Expect = 2.6
 Identities = 7/20 (35%), Positives = 9/20 (45%)

Query: 18 FSCSDCSRVYKKKASLTRHQ 37
          F C  C R + +   LT H 
Sbjct: 4  FQCRICMRNFSRSDHLTTHI 23


>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster
          [TaxId: 7227]}
          Length = 54

 Score = 24.3 bits (52), Expect = 0.82
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 49 CPLCSYRAKQKIHLTTHMAIRHHKKLG 75
          CP+C    +Q  +L  H+ +RH  K G
Sbjct: 27 CPICYAVIRQSRNLRRHLELRHFAKPG 53


>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 53

 Score = 23.8 bits (51), Expect = 1.2
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 13 KGGGLFSCSDCSRVYKKKASLTRHQ 37
          +  G+  C  C +V+     L +H+
Sbjct: 2  REAGILPCGLCGKVFTDANRLRQHE 26


>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 67

 Score = 23.9 bits (52), Expect = 1.3
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 8  IDSLYKGGGLFSCSDCSRVYKKKASLTRHQ 37
           D    GGGL  C  C+R +    +L  H 
Sbjct: 6  FDPDLPGGGLHRCLACARYFIDSTNLKTHF 35


>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 29

 Score = 23.1 bits (49), Expect = 1.4
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 47 YRCPLCSYRAKQKIHLTTHM 66
          ++C +C Y ++    LT H+
Sbjct: 4  FKCQICPYASRNSSQLTVHL 23


>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 37

 Score = 23.1 bits (49), Expect = 1.5
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query: 18 FSCSDCSRVYKKKASLTRH 36
          F CS C + + ++ ++ RH
Sbjct: 5  FVCSKCGKTFTRRNTMARH 23


>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 35

 Score = 22.8 bits (49), Expect = 2.0
 Identities = 4/22 (18%), Positives = 9/22 (40%)

Query: 47 YRCPLCSYRAKQKIHLTTHMAI 68
          + C +C      K +   H+ +
Sbjct: 8  FVCRICLSAFTTKANCARHLKV 29


>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
          Length = 30

 Score = 22.4 bits (47), Expect = 2.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 47 YRCPLCSYRAKQKIHLTTHMAIRHHKK 73
          Y+C  C +R+    +L TH+  +H K+
Sbjct: 3  YQCQYCEFRSADSSNLKTHIKTKHSKE 29


>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 29

 Score = 22.3 bits (47), Expect = 3.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 47 YRCPLCSYRAKQKIHLTTHMAIRH 70
          ++C  CS+  KQ  +L+ HM   H
Sbjct: 3  FKCNYCSFDTKQPSNLSKHMKKFH 26


>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 41

 Score = 22.4 bits (47), Expect = 3.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 18 FSCSDCSRVYKKKASLTRHQ 37
           +C +C R +K   S+ RHQ
Sbjct: 4  LTCLECMRTFKSSFSIWRHQ 23


>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 28

 Score = 21.9 bits (46), Expect = 4.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 18 FSCSDCSRVYKKKASLTRHQTYEC 41
          F C  C + Y +K +L  H+   C
Sbjct: 2  FECPKCGKCYFRKENLLEHEARNC 25


>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
          Saccharomyces cerevisiae sequence}
          Length = 31

 Score = 21.7 bits (46), Expect = 4.7
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 18 FSCSDCSRVYKKKASLTRHQ 37
          + C  C+R + ++  L RH 
Sbjct: 2  YPCGLCNRAFTRRDLLIRHA 21


>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor,
          different fingers {Fruit fly (Drosophila melanogaster)
          [TaxId: 7227]}
          Length = 36

 Score = 22.0 bits (46), Expect = 4.8
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 18 FSCSDCSRVYKKKASLTRHQTYECGQQ 44
          F C  C   +   ++L  HQ Y C  +
Sbjct: 9  FMCLPCGIAFSSPSTLEAHQAYYCSHR 35


>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase
          {Enterobacter cloacae [TaxId: 550]}
          Length = 363

 Score = 23.0 bits (48), Expect = 5.2
 Identities = 4/27 (14%), Positives = 12/27 (44%)

Query: 50 PLCSYRAKQKIHLTTHMAIRHHKKLGK 76
          PL   R+ +   + T +   ++++   
Sbjct: 23 PLTRLRSIEPGDIPTPLMGEYYRQRAS 49


>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 26

 Score = 21.0 bits (45), Expect = 6.5
 Identities = 5/20 (25%), Positives = 11/20 (55%)

Query: 18 FSCSDCSRVYKKKASLTRHQ 37
          + C +C + + + + L  HQ
Sbjct: 3  YKCLECGKAFSQNSGLINHQ 22


>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
          domain) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 28

 Score = 21.1 bits (44), Expect = 6.9
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 20 CSDCSRVYKKKASLTRHQTYECGQ 43
          C++C + + + + L RHQ    G+
Sbjct: 5  CAECGKAFVESSKLKRHQLVHTGE 28


>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
          8355]}
          Length = 26

 Score = 21.2 bits (44), Expect = 7.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 18 FSCSDCSRVYKKKASLTRHQ 37
          + C  C R + +K++L+RHQ
Sbjct: 1  YKCGLCERSFVEKSALSRHQ 20


>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus
          [TaxId: 2261]}
          Length = 53

 Score = 21.6 bits (46), Expect = 8.8
 Identities = 4/9 (44%), Positives = 6/9 (66%)

Query: 46 KYRCPLCSY 54
          K+ C +C Y
Sbjct: 2  KWVCKICGY 10


>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId:
          55529]}
          Length = 70

 Score = 21.6 bits (46), Expect = 9.3
 Identities = 5/12 (41%), Positives = 6/12 (50%)

Query: 43 QQPKYRCPLCSY 54
           + KY C  C Y
Sbjct: 4  DEGKYECEACGY 15


>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 37

 Score = 20.8 bits (44), Expect = 9.6
 Identities = 6/22 (27%), Positives = 9/22 (40%)

Query: 47 YRCPLCSYRAKQKIHLTTHMAI 68
          ++CP C     +  HL  H   
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKR 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.136    0.439 

Gapped
Lambda     K      H
   0.267   0.0611    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 291,880
Number of extensions: 11022
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 75
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)