BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12015
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAI 93
KCD C+ +RYK L HK G++P Y+C C + A+L TH I
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRI 67
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 38 TVHIDLKCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHC----PHRSKHKAHLTTHMAI 93
T KC C K + K L RH++ G++P Y+CP C R+ +AH TH
Sbjct: 45 TGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAHQRTHTGE 103
Query: 94 KHY 96
K Y
Sbjct: 104 KPY 106
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 29 DKSLNTNVLTVHIDLKCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLT 88
D + + T KC C K + + L H++ G++P Y CP C AHL
Sbjct: 64 DLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLR 122
Query: 89 THM 91
H
Sbjct: 123 AHQ 125
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 38 TVHIDLKCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHC 77
T KC C K + + L H++ G++P Y+CP C
Sbjct: 129 TGEKPYKCPECGKSFSREDNLHTHQRTHTGEKP-YKCPEC 167
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 45 CDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAI 93
C+ C K YR +GL RH++ G P+ CP C + ++ + H+ +
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPR-SCPECGKCFRDQSEVNRHLKV 54
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEP 70
KCDVC K +RY + L H++ G++P
Sbjct: 14 KCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|3D0Z|A Chain A, Structural Charcaterization Of An Engineered Allosteric
Protein
Length = 214
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 59 WRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAIKHY 96
WR+KKFE G E P+ P+ LT MAI Y
Sbjct: 41 WRNKKFELGHE----FPNLPYYIDGDVKLTQSMAIIRY 74
>pdb|1BG5|A Chain A, Crystal Structure Of The Ankyrin Binding Domain Of
Alpha-Na, K-Atpase As A Fusion Protein With Glutathione
S-Transferase
Length = 254
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 59 WRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAIKHY 96
WR+KKFE G E P+ P+ LT MAI Y
Sbjct: 41 WRNKKFELGLE----FPNLPYYIDGDVKLTQSMAIIRY 74
>pdb|1GNE|A Chain A, The Three-dimensional Structure Of Glutathione
S-transferase Of Schistosoma Japonicum Fused With A
Conserved Neutralizing Epitope On Gp41 Of Human
Immunodeficiency Virus Type 1
Length = 232
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 59 WRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAIKHY 96
WR+KKFE G E P+ P+ LT MAI Y
Sbjct: 40 WRNKKFELGLE----FPNLPYYIDGDVKLTQSMAIIRY 73
>pdb|1Y6E|A Chain A, Orthorhombic Glutathione S-Transferase Of Schistosoma
Japonicum
pdb|1Y6E|B Chain B, Orthorhombic Glutathione S-Transferase Of Schistosoma
Japonicum
Length = 223
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 59 WRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAIKHY 96
WR+KKFE G E P+ P+ LT MAI Y
Sbjct: 40 WRNKKFELGLE----FPNLPYYIDGDVKLTQSMAIIRY 73
>pdb|1U87|A Chain A, Crystal Structure Of The 26 Kda Glutathione
S-Transferase Y7f Mutant From Schistosoma Japonicum
Complexed With Glutathione
pdb|1U88|A Chain A, Crystal Structure Of The 26 Kda Glutathione
S-Transferase Y7f Mutant From Schistosoma Japonicum
Complexed With S- Octyl Glutathione
pdb|1U88|B Chain B, Crystal Structure Of The 26 Kda Glutathione
S-Transferase Y7f Mutant From Schistosoma Japonicum
Complexed With S- Octyl Glutathione
Length = 218
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 59 WRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAIKHY 96
WR+KKFE G E P+ P+ LT MAI Y
Sbjct: 41 WRNKKFELGLE----FPNLPYYIDGDVKLTQSMAIIRY 74
>pdb|1M99|A Chain A, Crystal Structure Of The 26 Kda Glutathione
S-Transferase From Schistosoma Japonicum Complexed With
Glutathione Sulfonic Acid
pdb|1M9A|A Chain A, Crystal Structure Of The 26 Kda Glutathione
S-transferase From Schistosoma Japonicum Complexed With
S-hexylglutathione
pdb|1M9B|A Chain A, Crystal Structure Of The 26 Kda Glutathione
S-Transferase From Schistosoma Japonicum Complexed With
Gamma-Glutamyl[s-(2-Iodobenzyl) Cysteinyl]glycine
pdb|1UA5|A Chain A, Non-Fusion Gst From S. Japonicum In Complex With
Glutathione
pdb|1GTA|A Chain A, Crystal Structures Of A Schistosomal Drug And Vaccine
Target: Glutathione S-Transferase From Schistosoma
Japonica And Its Complex With The Leading
Antischistosomal Drug Praziquantel
pdb|1GTB|A Chain A, Crystal Structures Of A Schistosomal Drug And Vaccine
Target: Glutathione S-Transferase From Schistosoma
Japonica And Its Complex With The Leading
Antischistosomal Drug Praziquantel
Length = 218
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 59 WRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAIKHY 96
WR+KKFE G E P+ P+ LT MAI Y
Sbjct: 41 WRNKKFELGLE----FPNLPYYIDGDVKLTQSMAIIRY 74
>pdb|3QMZ|T Chain T, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|S Chain S, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 219
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 59 WRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAIKHY 96
WR+KKFE G E P+ P+ LT MAI Y
Sbjct: 40 WRNKKFELGLE----FPNLPYYIDGDVKLTQSMAIIRY 73
>pdb|1B8X|A Chain A, Glutathione S-transferase Fused With The Nuclear Matrix
Targeting Signal Of The Transcription Factor Aml-1
Length = 280
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 59 WRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAIKHY 96
WR+KKFE G E P+ P+ LT MAI Y
Sbjct: 40 WRNKKFELGLE----FPNLPYYIDGDVKLTQSMAIIRY 73
>pdb|1DUG|A Chain A, Structure Of The Fibrinogen G Chain Integrin Binding And
Factor Xiiia Crosslinking Sites Obtained Through
Carrier Protein Driven Crystallization
pdb|1DUG|B Chain B, Structure Of The Fibrinogen G Chain Integrin Binding And
Factor Xiiia Crosslinking Sites Obtained Through
Carrier Protein Driven Crystallization
Length = 234
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 59 WRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAIKHY 96
WR+KKFE G E P+ P+ LT MAI Y
Sbjct: 40 WRNKKFELGLE----FPNLPYYIDGDVKLTQSMAIIRY 73
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 43 LKCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHM 91
+ C++C K +R L RHK G++P Y CP C R K K ++ H+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHV 55
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAI 93
KCD C K + + + L +H++ G++P Y+C C ++HL H +
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGHHRV 68
>pdb|3CRT|A Chain A, Structural Characterization Of An Engineered Allosteric
Protein
pdb|3CRU|A Chain A, Structural Characterization Of An Engineered Allosteric
Protein
Length = 214
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 59 WRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAIKHY 96
WR+KKFE G E P+ P+ LT MAI Y
Sbjct: 41 WRNKKFELGCE----FPNLPYYIDGDVKLTQSMAIIRY 74
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 38 TVHIDLKCDVCEKGYRYKTGLWRHKKFECGQEP 70
T +CD C+K +R ++ L H+ G++P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 38 TVHIDLKCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHM 91
T KC C K + + L +H++ G++P Y+CP C HL+ H
Sbjct: 28 TGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP-YKCPECGKSFSRSDHLSRHQ 80
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHC----PHRSKHKAHLTTHMAIKHY 96
KC C K + + L +H++ G++P Y+CP C S + H TH K Y
Sbjct: 6 KCPECGKSFSQSSNLQKHQRTHTGEKP-YKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 46 DVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHM 91
+ C++ + + L RH + GQ+P +QC C HLTTH+
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 29.3 bits (64), Expect = 0.62, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 59 WRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAIKHY 96
WR+KKFE G E P+ P+ LT MAI Y
Sbjct: 40 WRNKKFELGLE----FPNLPYYIDGDVKLTQSMAIIRY 73
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 46 DVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHM 91
+ C++ + L RH + GQ+P +QC C HLTTH+
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 46 DVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHM 91
+ C++ + L RH + GQ+P +QC C HLTTH+
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 69
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 46 DVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHM 91
+ C++ + L RH + GQ+P +QC C HLTTH+
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 46 DVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHM 91
+ C++ + L RH + GQ+P +QC C HLTTH+
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 72 YQCPHCPHRSKHKAHLTTHMAIKH 95
YQC +C +RS ++L TH+ KH
Sbjct: 3 YQCQYCEYRSADSSNLKTHIKTKH 26
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 46 DVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHM 91
+ C++ + L RH + GQ+P +QC C HLTTH+
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 46 DVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHM 91
+ C++ + L RH + GQ+P +QC C HLTTH+
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 53
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain
Bound To The Adeno-Associated Virus P5 Initiator
Element
Length = 124
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 25 NSSVDKSLNTNVLTVHIDLKCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPH--CPHRSK 82
NS++ K L+T+ VH+ C C K + + L RH+ G++P +QC C R
Sbjct: 20 NSAMRKHLHTHGPRVHV---CAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFS 75
Query: 83 HKAHLTTHMAI 93
+L TH+ I
Sbjct: 76 LDFNLRTHVRI 86
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 46 DVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHM 91
+ C++ + L RH + GQ+P +QC C HLTTH+
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|1X6F|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 462
Length = 88
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 68 QEPKYQCPHCPHRSKHKAHLTTHMAI 93
Q YQC HC + + A LT+H+ I
Sbjct: 22 QNSTYQCKHCDSKLQSTAELTSHLNI 47
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHM 91
KC C+ + L +H + + P ++C CP+ S++ + LT H+
Sbjct: 38 KCKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTVHL 84
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAI 93
KC+VC K + K L H + G +P Y+C C + + + L H+ I
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRI 58
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 72 YQCPHCPHRSKHKAHLTTHMAIKH 95
YQC +C RS ++L TH+ KH
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKH 26
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 72 YQCPHCPHRSKHKAHLTTHMAIKH 95
YQC +C RS ++L TH+ KH
Sbjct: 3 YQCQYCEXRSADSSNLKTHIKTKH 26
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEP 70
+CDVC K + + L +H++ G++P
Sbjct: 14 ECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 45 CDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAIKH 95
C VC++ +R + L H G+ P Y+C C + K L +HM H
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLH 118
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 46 DVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHM 91
+ C++ + KT L H + GQ+P +QC C +A L H+
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFSQQASLNAHI 54
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 72 YQCPHCPHRSKHKAHLTTHMAIKH 95
YQC +C RS ++L TH+ KH
Sbjct: 3 YQCQYCELRSADSSNLKTHIKTKH 26
>pdb|1RIK|A Chain A, E6-Binding Zinc Finger (E6apc1)
Length = 29
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 71 KYQCPHCPHRSKHKAHLTTHMAI 93
K+ CP CP R HLT H+ +
Sbjct: 2 KFACPECPKRFMRSDHLTLHILL 24
>pdb|1RIM|A Chain A, E6-Binding Zinc Finger (E6apc2)
Length = 33
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 71 KYQCPHCPHRSKHKAHLTTHMAI 93
K+ CP CP R HL+ H+ +
Sbjct: 2 KFACPECPKRFMRSDHLSKHITL 24
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEP 70
KC+ C K +R+ + L RH++ G++P
Sbjct: 14 KCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEP 70
KC+ C KGY K L H+K G+ P
Sbjct: 14 KCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|4A17|Y Chain Y, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 2.
pdb|4A1A|Y Chain Y, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 3.
pdb|4A1C|Y Chain Y, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 4.
pdb|4A1E|Y Chain Y, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 1
Length = 103
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 51 GYRYKTGLWRH-KKFECGQEPKYQCPHC 77
G RY L + KKFE Q KY CP C
Sbjct: 15 GTRYGASLRKVVKKFEITQHAKYGCPFC 42
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 30 KSLNTNVLTVHIDLK---CDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHR 80
KS +++H+ L+ C VC K ++ K L H K G +P Y+C C R
Sbjct: 22 KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKR 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.464
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,930,221
Number of Sequences: 62578
Number of extensions: 104384
Number of successful extensions: 465
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 107
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)